Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1771

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 788

Length: 1314
ACGTcount: A:0.38, C:0.15, G:0.14, T:0.34


Found at i:1074 original size:26 final size:26

Alignment explanation


    Indices: 1045--1096  Score: 95
    Period size: 26  Copynumber: 2.0  Consensus size: 26

       1035 AATAAAAGAA

                               *      
       1045 AACATTCAATATTTCAGTTTAATTAG
          1 AACATTCAATATTTCAGTTGAATTAG

                                      
       1071 AACATTCAATATTTCAGTTGAATTAG
          1 AACATTCAATATTTCAGTTGAATTAG

       1097 CATTGATTTC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  26   25  1.00

ACGTcount: A:0.38, C:0.12, G:0.10, T:0.40


Consensus pattern (26 bp):   
AACATTCAATATTTCAGTTGAATTAG
Done.