Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2048

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 679

Length: 1132
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.26


Found at i:668 original size:12 final size:11

Alignment explanation


    Indices: 645--671  Score: 54
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        635 TCCTTTCTTT

                       
        645 AAAACTAAAAA
          1 AAAACTAAAAA

                       
        656 AAAACTAAAAA
          1 AAAACTAAAAA

                 
        667 AAAAC
          1 AAAAC

        672 CTCCCAAACC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   16  1.00

ACGTcount: A:0.81, C:0.11, G:0.00, T:0.07


Consensus pattern (11 bp):   
AAAACTAAAAA
Done.