Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3194

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 471

Length: 786
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.32


Found at i:327 original size:19 final size:19

Alignment explanation


    Indices: 303--343  Score: 82
    Period size: 19  Copynumber: 2.2  Consensus size: 19

        293 TGTTGCCACG

                               
        303 TTTTGGCCATTTTTTTAAT
          1 TTTTGGCCATTTTTTTAAT

                               
        322 TTTTGGCCATTTTTTTAAT
          1 TTTTGGCCATTTTTTTAAT

               
        341 TTT
          1 TTT

        344 CATAATGATT


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   22  1.00

ACGTcount: A:0.15, C:0.10, G:0.10, T:0.66


Consensus pattern (19 bp):   
TTTTGGCCATTTTTTTAAT
Done.