Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1121

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2728
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.32

Warning! 105 characters in sequence are not A, C, G, or T


Found at i:1320 original size:11 final size:11

Alignment explanation


    Indices: 1295--1327  Score: 50
    Period size: 12  Copynumber: 3.0  Consensus size: 11

       1285 GGCCTCTCCA

                        
       1295 TTTTCTTTCTTC
          1 TTTTCTTT-TTC

                       
       1307 TTTTCTTTTTC
          1 TTTTCTTTTTC

                       
       1318 TTTT-TTTTTC
          1 TTTTCTTTTTC

       1328 GAAATAATTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  10    6  0.29
  11    7  0.33
  12    8  0.38

ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82


Consensus pattern (11 bp):   
TTTTCTTTTTC
Done.