Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold950

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3916
ACGTcount: A:0.31, C:0.20, G:0.18, T:0.30


Found at i:155 original size:25 final size:25

Alignment explanation


    Indices: 127--177  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

        117 CCCGTTTTCT

                *                    
        127 AAACGGGCCTCATTTTTTTACCCAA
          1 AAACAGGCCTCATTTTTTTACCCAA

                                     
        152 AAACAGGCCTCATTTTTTTACCCAA
          1 AAACAGGCCTCATTTTTTTACCCAA

             
        177 A
          1 A

        178 CCCATATTTC


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.31, C:0.27, G:0.10, T:0.31


Consensus pattern (25 bp):   
AAACAGGCCTCATTTTTTTACCCAA
Done.