Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold2491
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 556
Length: 928
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Found at i:111 original size:45 final size:45
Alignment explanation
Indices: 60--282 Score: 122
Period size: 44 Copynumber: 5.0 Consensus size: 45
50 GATTAAGCGT
60 GTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAG
1 GTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAG
* * ** * ** *
105 GTTGAAGAC-ACAAACCTAT-CC-TCTCT-CAGTTG-TGATGGTGCTG
1 GTTGAAGACAACAGATCT-TGCCTTC-CTGCA-TTGACAACGAAGCAG
* * * *
148 GTTGAAGACAAAAGATCTTGCGTTCCTGCATTGACAGCGAAGTAG
1 GTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAG
* * * * ** * * *
193 GTCGAAGAC-ACA-ATATTTGCCTCCCT-CGGTTG-TGATGGAGCTG
1 GTTGAAGACAACAGAT-CTTGCCTTCCTGC-ATTGACAACGAAGCAG
* * *
236 GTTGAAGACAAAAGATCTTGCGTTCCTGCATTGACAGCGAAGCAG
1 GTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAG
281 GT
1 GT
283 CAAAGACACA
Statistics
Matches: 119, Mismatches: 45, Indels: 28
0.62 0.23 0.15
Matches are distributed among these distances:
43 34 0.29
44 50 0.42
45 35 0.29
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.26
Consensus pattern (45 bp):
GTTGAAGACAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAG
Found at i:158 original size:88 final size:89
Alignment explanation
Indices: 4--385 Score: 533
Period size: 88 Copynumber: 4.3 Consensus size: 89
1 ATG
* * **
4 GACAGCGAAGCAGGTCAAAGACACAAACCT-TGCCTCTCGCGGTTGTGATTAAGC-GTGTTGAAG
1 GACAGCGAAGCAGGTCAAAGACACAAACCTATGCCTCCCTCGGTTGTGATGGAGCTG-GTTGAAG
*
67 ACAACAGATCTTGCCTTCCTGCATT
65 ACAAAAGATCTTGCCTTCCTGCATT
* ** * * *
92 GACAACGAAGCAGGTTGAAGACACAAACCTAT-CCTCTCTCAGTTGTGATGGTGCTGGTTGAAGA
1 GACAGCGAAGCAGGTCAAAGACACAAACCTATGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGA
*
156 CAAAAGATCTTGCGTTCCTGCATT
66 CAAAAGATCTTGCCTTCCTGCATT
* * *
180 GACAGCGAAGTAGGTCGAAGACACAATA--TTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAG
1 GACAGCGAAGCAGGTCAAAGACACAA-ACCTATGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAG
*
243 ACAAAAGATCTTGCGTTCCTGCATT
65 ACAAAAGATCTTGCCTTCCTGCATT
268 GACAGCGAAGCAGGTCAAAGACACAAACC-ATGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGA
1 GACAGCGAAGCAGGTCAAAGACACAAACCTATGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGA
* * *
332 CAAAAGATCCTGGCTTCCTGTATT
66 CAAAAGATCTTGCCTTCCTGCATT
356 GACAGCGAAGCAGGTCAAAGACACAAACCT
1 GACAGCGAAGCAGGTCAAAGACACAAACCT
386 GTGATGGAGC
Statistics
Matches: 263, Mismatches: 24, Indels: 13
0.88 0.08 0.04
Matches are distributed among these distances:
87 3 0.01
88 257 0.98
89 3 0.01
ACGTcount: A:0.29, C:0.23, G:0.25, T:0.23
Consensus pattern (89 bp):
GACAGCGAAGCAGGTCAAAGACACAAACCTATGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGA
CAAAAGATCTTGCCTTCCTGCATT
Found at i:245 original size:43 final size:42
Alignment explanation
Indices: 196--333 Score: 100
Period size: 43 Copynumber: 3.2 Consensus size: 42
186 GAAGTAGGTC
196 GAAGACACAATATTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
1 GAAGACACAA-ATTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
* * * ** * * *
239 GAAGACAAAAGATCTTGCGTTCCT-GCAT-TGACAGCGAAGCAGGTC
1 GAAGACACAA-AT-TTGCCTCCCTCGGTTGTGA-TG-G-AGCTGGTT
* **
284 AAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGTT
1 GAAGACACAAA-TTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
327 GAAGACA
1 GAAGACA
334 AAAGATCCTG
Statistics
Matches: 67, Mismatches: 21, Indels: 14
0.66 0.21 0.14
Matches are distributed among these distances:
42 3 0.04
43 26 0.39
44 18 0.27
45 17 0.25
46 3 0.04
ACGTcount: A:0.28, C:0.22, G:0.27, T:0.23
Consensus pattern (42 bp):
GAAGACACAAATTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
Found at i:315 original size:176 final size:175
Alignment explanation
Indices: 4--928 Score: 1180
Period size: 176 Copynumber: 5.3 Consensus size: 175
1 ATG
* * * **
4 GACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCTCGCGGTTGTGATTAAGC-GTGTTGAAGA
1 GACAGCGAAGCAGGTCGAAGACACAAA-CTTGCCTCCCTCGGTTGTGATGGAGCTG-GTTGAAGA
* *
68 CAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTTGAAGACACAAACCTAT-CCTCTCTC
64 CAACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCT-TGCCTCTCTC
* * *
132 AGTTGTGATGGTGCTGGTTGAAGACAAAAGATCTTGCGTTCCTGCATT
128 GGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
* *
180 GACAGCGAAGTAGGTCGAAGACACAATATTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGAC
1 GACAGCGAAGCAGGTCGAAGACACAA-ACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGAC
* * * * *
245 AAAAGATCTTGCGTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCATGCCTCCCTCGG
65 AACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGG
* * *
310 TTGTGATGGAGCTGGTTGAAGACAAAAGATCCTGGCTTCCTGTATT
130 TTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
*
356 GACAGCGAAGCAGGTCAAAGACACAAA---------C-C---TGTGATGGAGCTGGTTGAAGACA
1 GACAGCGAAGCAGGTCGAAGACACAAACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACA
* *
408 GCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGT
66 ACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGT
***
473 TGTGATGGAGCTGGTTGAAGACAGCTGATCTTGCCTTCCTGCATT
131 TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
*
518 GACAGCGAAGCAGGTCGAAGACACAAAACTTGCCTCCCTTGGTTGTGATGGAGCTGGTTGAAGAC
1 GACAGCGAAGCAGGTCGAAGACAC-AAACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGAC
* * * * *
583 AGCAGATCTTGCCTTCTTGTATTGACAGCGAAGCTGGTCGAAGACACAAACCTTGCCTC-CGTTG
65 AACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTC-TCG
* *
647 GTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCTGCATT
129 GTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
* * * * *
694 GACAGCGAATCAGATCGAAGACACAAGCCCTGCCTCCCTCGGTTGTGATGGAGTTGGTTGAAGAC
1 GACAGCGAAGCAGGTCGAAGACACAA-ACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGAC
* * * * *
759 AACAGATCTTGCCTTCTTGCATTGACAGCGATGCAGTTCAAAGACACAAACCTTGGCTCTCTCGG
65 AACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGG
* * * *
824 TTGTGATTGAGCTTGTTGAAGACAATAGATCTTGCCTTCCTCCATT
130 TTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
* * * * * *
870 AACAGCGAAGGAGGTTGGAGACACAAACCTTGCCTCTCTCAGTTGTGATGGAGCTGGTT
1 GACAGCGAAGCAGGTCGAAGACACAAA-CTTGCCTCCCTCGGTTGTGATGGAGCTGGTT
Statistics
Matches: 650, Mismatches: 78, Indels: 42
0.84 0.10 0.05
Matches are distributed among these distances:
162 143 0.22
163 3 0.00
165 1 0.00
166 1 0.00
172 1 0.00
175 5 0.01
176 493 0.76
177 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (175 bp):
GACAGCGAAGCAGGTCGAAGACACAAACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACA
ACAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGT
TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATT
Found at i:432 original size:74 final size:74
Alignment explanation
Indices: 311--459 Score: 235
Period size: 74 Copynumber: 2.0 Consensus size: 74
301 CTCCCTCGGT
* *
311 TGTGATGGAGCTGGTTGAAGACAAAAGATCCTGGCTTCCTGTATTGACAGCGAAGCAGGTCAAAG
1 TGTGATGGAGCTGGTTGAAGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAG
376 ACACAAACC
66 ACACAAACC
** * * *
385 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAG
450 ACACAAACC
66 ACACAAACC
459 T
1 T
460 TGCCTCTCTC
Statistics
Matches: 68, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
74 68 1.00
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (74 bp):
TGTGATGGAGCTGGTTGAAGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAG
ACACAAACC
Found at i:506 original size:44 final size:42
Alignment explanation
Indices: 385--686 Score: 164
Period size: 44 Copynumber: 6.9 Consensus size: 42
375 GACACAAACC
* *
385 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTC-CTGCAT
1 TGTGATGGAGCTGGTTGAAGACA-CAAATCTTGCCTTCTC-G-GT
** * * * *
429 TGACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGT
1 TGTGA-TGGAGCTGGTTGAAGACACAAATCTTGCCT-TCTCGGT
** **
473 TGTGATGGAGCTGGTTGAAGACAGCTGATCTTGCCTTC-CTGCA
1 TGTGATGGAGCTGGTTGAAGACA-CAAATCTTGCCTTCTC-GGT
* * * * * *
516 T-TGACAGCGAAGCAGGTCGAAGACACAAAACTTGCCTCCCTTGGT
1 TGTGA-TG-G-AGCTGGTTGAAGACACAAATCTTGCCT-TCTCGGT
* *
561 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCT-TGT
1 TGTGATGGAGCTGGTTGAAGACA-CAAATCTTGCCTTCTCGGT
* * * * *
603 AT-TGACAGCGAAGCTGGTCGAAGACACAAACCTTGCCTCCGTTGGT
1 -TGTGA-TG-G-AGCTGGTTGAAGACACAAATCTTGCCTTC-TCGGT
* *
649 TGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTC
1 TGTGATGGAGCTGGTTGAAGAC-ACAAATCTTGCCTTC
687 CTGCATTGAC
Statistics
Matches: 191, Mismatches: 47, Indels: 40
0.69 0.17 0.14
Matches are distributed among these distances:
42 9 0.05
43 50 0.26
44 71 0.37
45 52 0.27
46 9 0.05
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (42 bp):
TGTGATGGAGCTGGTTGAAGACACAAATCTTGCCTTCTCGGT
Found at i:534 original size:88 final size:88
Alignment explanation
Indices: 385--928 Score: 757
Period size: 88 Copynumber: 6.2 Consensus size: 88
375 GACACAAACC
*
385 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
450 ACACAAACCTTGCCTCTCTCGGT
66 ACACAAACCTTGCCTCTCTCGGT
*
473 TGTGATGGAGCTGGTTGAAGACAGCTGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
* * *
538 ACACAAAACTTGCCTCCCTTGGT
66 ACACAAACCTTGCCTCTCTCGGT
* * *
561 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCTTGTATTGACAGCGAAGCTGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
*
626 ACACAAACCTTGCCTC-CGTTGGT
66 ACACAAACCTTGCCTCTC-TCGGT
** * * * *
649 TGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCTGCATTGACAGCGAATCAGATCGAAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
* * *
714 ACACAAGCCCTGCCTCCCTCGGT
66 ACACAAACCTTGCCTCTCTCGGT
* * * * * *
737 TGTGATGGAGTTGGTTGAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGATGCAGTTCAAAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
*
802 ACACAAACCTTGGCTCTCTCGGT
66 ACACAAACCTTGCCTCTCTCGGT
* * ** * * * * *
825 TGTGATTGAGCTTGTTGAAGACAATAGATCTTGCCTTCCTCCATTAACAGCGAAGGAGGTTGGAG
1 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
*
890 ACACAAACCTTGCCTCTCTCAGT
66 ACACAAACCTTGCCTCTCTCGGT
913 TGTGATGGAGCTGGTT
1 TGTGATGGAGCTGGTT
Statistics
Matches: 402, Mismatches: 52, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
87 1 0.00
88 400 1.00
89 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (88 bp):
TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
ACACAAACCTTGCCTCTCTCGGT
Found at i:576 original size:250 final size:250
Alignment explanation
Indices: 135--899 Score: 992
Period size: 250 Copynumber: 3.0 Consensus size: 250
125 CTCTCTCAGT
* * *
135 TGTGATGGTGCTGGTTGAAGACAAAAGATCTTGCGTTCCTGCATTGACAGCGAAGTAGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
* * *
200 ACACAATA-TTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCGTTCCTG
66 ACACAA-ACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTG
*
264 CATTGACAGCGAAGCAGGTCAAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGTTGA
130 CATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGA
* * *
329 AGACAAAAGATCCTGGCTTCCTGTATTGACAGCGAAGCAGGTCAAAGACACAAACC
195 AGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACC
** *
385 TGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATTGACAGTGAAGCAGGTCGAAG
1 TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
* * *
450 ACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGACAGCTGATCTTGCCTTCCTGC
66 ACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGC
* * *
515 ATTGACAGCGAAGCAGGTCGAAGACACAAAACTTGCCTCCCTTGGTTGTGATGGAGCTGGTTGAA
131 ATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAA
** * *
580 GACAGCAGATCTTGCCTTCTTGTATTGACAGCGAAGCTGGTCGAAGACACAAACCTTGCCTCC
196 GACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAA--------CC
* * * *
643 GTTGGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCTGCATTGACAGCGAATCAGA
1 ------TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGG
* * *
708 TCGAAGACACAAGCCCTGCCTCCCTCGGTTGTGATGGAGTTGGTTGAAGACAACAGATCTTGCCT
60 TCGAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCT
* * * * * * *
773 TCTTGCATTGACAGCGATGCAGTTCAAAGACACAAACCTTGGCTCTCTCGGTTGTGATTGAGCTT
125 TCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTG
* ** * * * *
838 GTTGAAGACAATAGATCTTGCCTTCCTCCATTAACAGCGAAGGAGGTTGGAGACACAAACC
190 GTTGAAGACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACC
899 T
1 T
900 TGCCTCTCTC
Statistics
Matches: 444, Mismatches: 56, Indels: 30
0.84 0.11 0.06
Matches are distributed among these distances:
249 1 0.00
250 224 0.50
256 2 0.00
258 2 0.00
264 215 0.48
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.25
Consensus pattern (250 bp):
TGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAG
ACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTGC
ATTGACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAA
GACAAAAGATCTTGCCTTCCTGTATTGACAGCGAAGCAGGTCGAAGACACAAACC
Found at i:803 original size:426 final size:429
Alignment explanation
Indices: 4--928 Score: 1234
Period size: 426 Copynumber: 2.1 Consensus size: 429
1 ATG
* * **
4 GACAGCGAAGCAGGTCAAAGACACAAACCTTGCCTCTCGCGGTTGTGATTAAGC-GTGTTGAAGA
1 GACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTG-GTTGAAGA
* * *
68 CAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTTGAAGACACAAACCTATCCTCTCTCA
65 CAACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTCGAAGACACAAAACTATCCTCCCTCA
* *
133 GTTGTGATGGTGCTGGTTGAAGACAAAAGATCTTGCGTTCCTGCATTGACAGCGAAGTAGGTCGA
130 GTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGGTCGA
* * * *
198 AGACACAATATTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCGTTCCT
195 AGACACAATACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCT
*
263 GCATTGACAGCGAAGCAGGTCAAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGTTG
260 GCATTGACAGCGAAGCAGATCAAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGTTG
* *
328 AAGACAAAAGATCCTGGCTTCCTGTATTGACAGCGAAGCAGGTCAAAGACACAAA-C-C-TGTGA
325 AAGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTCGTGTGA
* *
390 TGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCCTGCATT
390 TGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTCCATT
*
430 GACAGTGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC
1 GACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC
* * * **
495 AGCTGATCTTGCCTTCCTGCATTGACAGCGAAGCAGGTCGAAGACACAAAACT-TGCCTCCCTTG
66 AACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTCGAAGACACAAAACTAT-CCTCCCTCA
** * *
559 GTTGTGATGGAGCTGGTTGAAGACAGCAGATCTTGCCTTCTTGTATTGACAGCGAAGCT-GGTCG
130 GTTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAG-TAGGTCG
* *
623 AAGACACAA-ACCTTGCCTCCGTTGGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTC
194 AAGACACAATA-CTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTC
* * * * *
687 CTGCATTGACAGCGAATCAGATCGAAGACACAAGCCCTGCCTCCCTCGGTTGTGATGGAGTTGGT
258 CTGCATTGACAGCGAAGCAGATCAAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGT
* * * * *
752 TGAAGACAACAGATCTTGCCTTCTTGCATTGACAGCGATGCAGTTCAAAGACACAAACCTTGGCT
323 TGAAGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAA--------
* * *
817 CTCTCGGTTGTGATTGAGCTTGTTGAAGACAATAGATCTTGCCTTCCTCCATT
380 C-CTC-G-TGTGATGGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTCCATT
* * * * *
870 AACAGCGAAGGAGGTTGGAGACACAAACCTTGCCTCTCTCAGTTGTGATGGAGCTGGTT
1 GACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTT
Statistics
Matches: 432, Mismatches: 49, Indels: 22
0.86 0.10 0.04
Matches are distributed among these distances:
425 2 0.00
426 333 0.77
427 2 0.00
436 1 0.00
437 1 0.00
440 93 0.22
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (429 bp):
GACAGCGAAGCAGGTCGAAGACACAAACCTTGCCTCTCTCGGTTGTGATGGAGCTGGTTGAAGAC
AACAGATCTTGCCTTCCTGCATTGACAACGAAGCAGGTCGAAGACACAAAACTATCCTCCCTCAG
TTGTGATGGAGCTGGTTGAAGACAAAAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGGTCGAA
GACACAATACTTGCCTCCCTCGGTTGTGATGGAGCTGGTTGAAGACAAAAAATCTTACCTTCCTG
CATTGACAGCGAAGCAGATCAAAGACACAAACCATGCCTCCCTCGGTTGTGATGGAGCTGGTTGA
AGACAAAAGATCCTGCCTTCCTGCATTGACAGCGAAGCAGGTCAAAGACACAAACCTCGTGTGAT
GGAGCTGGTTGAAGACAACAGATCTTGCCTTCCTCCATT
Done.