Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2241

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 612

Length: 1021
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26


Found at i:799 original size:14 final size:13

Alignment explanation


    Indices: 782--833  Score: 50
    Period size: 14  Copynumber: 3.6  Consensus size: 13

        772 CAAAAAGTCG

                          
        782 TGGACAAAATAAAT
          1 TGGACAAAA-AAAT

                         * 
        796 TGGACGAAAAAATTT
          1 TGGAC-AAAAAA-AT

                           
        811 GTGGACAAAAAGAAT
          1 -TGGACAAAAA-AAT

                    
        826 TGGACAAA
          1 TGGACAAA

        834 TGACTCCGTG


Statistics
Matches: 32,  Mismatches: 2, Indels: 8
        0.76            0.05        0.19

Matches are distributed among these distances:
  14   15  0.47
  15   11  0.34
  16    6  0.19

ACGTcount: A:0.52, C:0.08, G:0.21, T:0.19


Consensus pattern (13 bp):   
TGGACAAAAAAAT
Done.