Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold545
Parameters: 2 7 7 80 10 50 1000
Length:  96208

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
427--459
16
2.1
16
88
5
50
54
0
0
45
0.99
18311--18408
49
2.0
49
97
0
187
34
14
23
27
1.93
21687--21742
28
2.0
28
96
0
103
35
8
35
19
1.83
22374--22430
3
19.0
3
100
0
114
33
0
0
66
0.92
23387--23414
3
9.3
3
100
0
56
32
0
0
67
0.91
32544--32593
21
2.4
21
77
9
57
26
10
34
30
1.89
36249--36289
20
2.0
20
85
0
55
36
19
9
34
1.85
37205--37246
21
2.0
20
86
13
59
21
9
2
66
1.32
44534--44560
9
3.0
9
100
0
54
44
0
0
55
0.99
47315--47382
31
2.2
32
78
7
77
41
0
5
52
1.25
50531--50591
26
2.4
26
83
8
72
40
6
0
52
1.27
51594--51636
11
3.7
11
82
11
50
74
2
4
18
1.10
58607--58680
3
24.7
3
77
15
73
68
2
2
25
1.16
58607--58681
19
4.6
14
75
23
60
69
2
2
25
1.15
58610--58680
22
3.5
21
83
10
87
69
2
2
25
1.16
58818--58891
3
24.7
3
77
15
73
68
2
2
25
1.16
58818--58892
19
4.6
14
75
23
60
69
2
2
25
1.15
58821--58891
22
3.5
21
83
10
87
69
2
2
25
1.16
58559--58983
211
2.0
212
98
0
825
55
10
8
25
1.63
60373--60558
60
3.1
58
66
23
157
24
6
9
60
1.51
60350--60548
66
3.1
66
65
19
195
26
6
7
60
1.47
69292--69531
44
5.6
43
73
8
175
26
19
22
31
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69278--69526
128
1.9
128
90
0
390
26
20
22
31
1.98
69538--69796
50
5.2
50
71
4
220
26
20
20
32
1.97
80980--81020
3
13.7
3
100
0
82
68
0
0
31
0.90
82114--82317
101
2.0
102
99
0
401
19
7
28
44
1.79
89494--89550
3
18.7
3
82
10
71
63
3
3
29
1.28
90833--90949
41
2.8
40
83
5
126
32
19
19
28
1.96
90873--91160
128
2.2
128
90
0
441
28
19
20
31
1.97
90833--91113
84
3.3
85
73
11
236
28
19
20
30
1.97
90936--91163
44
5.3
44
76
7
209
26
19
21
32
1.97
90914--91178
44
6.1
44
75
10
172
26
20
20
32
1.97
91169--91604
50
8.8
50
71
3
322
28
20
19
30
1.97
91169--91604
100
4.4
100
84
2
502
28
20
19
30
1.97
91229--91962
200
3.8
190
85
6
847
29
21
19
30
1.97
91611--91962
100
3.5
100
96
0
623
28
23
19
28
1.98
91325--91888
284
2.0
284
90
0
885
29
21
19
29
1.98
91611--91967
50
7.1
50
73
3
324
28
23
19
28
1.98
95112--95238
24
5.4
24
78
10
120
13
4
9
72
1.25
95133--95237
23
4.5
23
81
10
133
14
4
8
72
1.25
95108--95163
30
1.9
30
88
3
87
10
3
10
75
1.17
95133--95238
46
2.3
47
91
1
178
14
4
8
72
1.24

Tables:   1

The End!