genome.fa.s3866.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold486
Parameters: 2 7 7 80 10 50 1000
Length:  154153

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1692--2012	41	7.8	41	74	6	231	38	22	22	16	1.93
1727--2012	82	3.5	81	82	3	313	39	22	22	16	1.92
4386--4423	19	2.0	19	89	0	58	36	5	18	39	1.73
4532--4695	54	3.0	54	99	0	319	19	7	26	46	1.76
27529--27558	1	30.0	1	100	0	60	0	0	0	100	0.00
35168--35343	39	4.5	39	86	1	237	28	6	22	42	1.77
35308--35341	17	2.1	16	88	5	50	26	0	26	47	1.53
43751--43790	15	2.7	15	88	11	64	60	0	0	40	0.97
44601--44655	24	2.3	24	96	0	101	38	20	10	30	1.87
44675--44705	13	2.4	13	100	0	62	45	16	6	32	1.72
55008--55128	62	1.9	63	88	5	183	23	19	30	26	1.98
61133--61302	90	1.9	90	96	0	313	28	16	7	47	1.73
73657--73722	13	5.5	13	71	20	63	34	0	13	51	1.41
73650--73722	23	3.2	23	90	1	112	35	0	12	52	1.39
76830--77038	92	2.3	91	86	5	278	45	3	3	46	1.39
76966--77013	26	1.9	25	84	16	64	45	0	2	52	1.12
77188--77229	15	2.7	16	82	14	52	45	0	2	52	1.13
77179--77220	15	2.9	15	82	10	52	47	0	0	52	1.00
77445--77496	16	3.2	16	94	0	86	34	36	0	28	1.58
84928--85142	33	5.6	40	68	20	154	21	17	27	33	1.96
84973--85180	33	5.7	33	66	21	112	21	19	26	32	1.97
84932--85179	75	3.3	74	86	3	354	21	18	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87528--87602	19	4.0	19	70	20	68	36	26	1	36	1.65
88402--88441	13	3.2	13	82	7	55	0	30	0	70	0.88
88407--88440	17	2.0	17	94	0	59	0	32	0	67	0.91
88496--88546	5	10.2	5	85	14	70	58	0	0	41	0.98
88498--88546	24	2.0	24	92	7	82	59	0	0	40	0.98
88496--88545	19	2.5	19	87	12	66	58	0	0	42	0.98
88641--88854	108	2.0	108	91	2	351	31	16	6	45	1.73
97362--97591	105	2.2	105	80	7	251	32	15	25	26	1.95
97460--97588	33	3.9	33	70	7	100	32	15	24	27	1.95
102547--102592	24	1.9	24	82	8	58	32	8	13	45	1.73
103408--103451	19	2.3	19	92	0	79	40	9	13	36	1.76
103409--103469	19	3.1	19	80	13	70	44	8	9	37	1.68
104255--104282	13	2.2	13	100	0	56	7	7	0	85	0.73
107764--107837	36	2.1	36	100	0	148	27	20	16	36	1.93
108130--108185	15	3.5	15	79	18	60	73	1	23	1	1.03
109449--109657	44	4.8	44	66	13	135	31	17	22	27	1.97
109443--110373	257	3.6	257	92	1	1477	30	20	23	25	1.98
109399--110353	389	2.5	382	90	3	1455	30	20	24	24	1.99
109967--110279	44	7.1	44	65	9	136	30	20	24	24	1.98
110358--110648	44	6.7	43	72	13	168	28	20	22	27	1.99
109399--110396	132	7.7	132	90	3	1484	30	20	24	24	1.98
110347--110781	217	2.0	217	92	1	721	29	19	23	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110703--110818	44	2.7	44	77	11	139	31	18	22	27	1.97
118821--118868	24	2.0	24	95	0	87	27	16	27	29	1.97
118822--118878	24	2.4	24	88	5	80	26	15	28	29	1.96
120779--120820	17	2.5	17	88	0	66	54	7	7	30	1.54
120826--120850	13	1.9	13	100	0	50	64	0	4	32	1.12
130036--130176	72	2.0	72	86	0	201	38	19	15	26	1.91
132648--132705	3	18.3	3	89	7	80	31	6	0	62	1.22
145352--145452	34	3.0	34	85	2	132	29	11	12	45	1.78
145362--145467	34	3.1	33	81	5	122	30	10	12	47	1.74
145557--145711	45	3.5	45	75	2	152	26	17	18	38	1.92
147757--147814	20	3.0	19	80	10	55	63	1	5	29	1.25
147788--147879	20	4.7	20	71	11	73	61	1	6	30	1.28
147807--147903	29	3.3	29	75	12	90	58	2	7	31	1.37
147799--147924	59	2.1	60	81	10	143	58	3	7	30	1.43
148148--148190	19	2.4	17	78	17	50	39	2	0	58	1.11
148161--148196	18	1.9	19	88	5	56	41	5	0	52	1.24
149306--149352	21	2.2	21	78	17	53	44	2	2	51	1.25
150310--150397	38	2.3	39	88	4	124	37	2	7	52	1.43

Tables:   1

The End!