Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold948

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3931
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.37


Found at i:3887 original size:15 final size:15

Alignment explanation


    Indices: 3867--3897  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

       3857 CCAACCTTCA

                   *       
       3867 AATTTTAGGTCAATT
          1 AATTTTACGTCAATT

                           
       3882 AATTTTACGTCAATT
          1 AATTTTACGTCAATT

             
       3897 A
          1 A

       3898 TACATAATAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.35, C:0.10, G:0.10, T:0.45


Consensus pattern (15 bp):   
AATTTTACGTCAATT
Done.