Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3031

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 483

Length: 806
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.30

Warning! 59 characters in sequence are not A, C, G, or T


Found at i:605 original size:132 final size:132

Alignment explanation


    Indices: 278--803  Score: 750
    Period size: 132  Copynumber: 4.0  Consensus size: 132

        268 NNNNNNNNNN

                            *     *                                          
        278 CTGCTCAGAGAGACAATGCTTTATGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
          1 CTGCTCAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT

            *                                                    *           
        343 ACCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTT-GACCTTCTCCGC
         66 GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGC

              
        407 TA
        131 TA

              *          *             *     * *                   *         
        409 CTACTCAGAGAGAGAAGGCTTTGTGGCCTAAATTTCCTTCCCACTATCTTGGAAATATAAGATTT
          1 CTGCTCAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT

                               *            *      *                         
        474 GCCATCTTTGATCTGCTCCGCTACTGCTTAGGCAGATAAAATCTACAATCTTCAACCTTCTCCGC
         66 GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGC

              
        539 TA
        131 TA

                               *   *                *         *              
        541 CTGCTCAG-GAAGACAAGGGTTTTTGGCTTAAATCTGCTTTCCACTATCTCGGAAAGATAAGATT
          1 CTGCTCAGAG-AGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATT

               *                                                       *   * 
        605 TGCTATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTACTCTG
         65 TGCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCG

            *  
        670 TTA
        130 CTA

                    *            *                      *     *              
        673 CTGCTCAGGGAGACAAGGCTTGGTGGCTTAAATCTGCTTCCCACGATCTTAGAAAGATAAGATTT
          1 CTGCTCAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT

             * *          *         *  *   *                                 
        738 GTCGTCTTTGATCTACTCCACTACGGCATAGTGAGATAAGATCTACAATCTTCAACCTTCTCCGC
         66 GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGC

             
        803 T
        131 T

        804 GCT


Statistics
Matches: 345,  Mismatches: 47, Indels: 5
        0.87            0.12        0.01

Matches are distributed among these distances:
 131  106  0.31
 132  238  0.69
 133    1  0.00

ACGTcount: A:0.26, C:0.24, G:0.18, T:0.32


Consensus pattern (132 bp):   
CTGCTCAGAGAGACAAGGCTTTGTGGCTTAAATCTGCTTCCCACTATCTTGGAAAGATAAGATTT
GCCATCTTTGATCTGCTCCACTACTGCTTAGGGAGATAAGATCTACAATCTTCAACCTTCTCCGC
TA
Done.