Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold796

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6388
ACGTcount: A:0.32, C:0.16, G:0.18, T:0.28

Warning! 358 characters in sequence are not A, C, G, or T


Found at i:508 original size:15 final size:16

Alignment explanation


    Indices: 488--519  Score: 57
    Period size: 15  Copynumber: 2.1  Consensus size: 16

        478 AGAAAATGAA

                            
        488 AAAGAAAAAGAA-ATG
          1 AAAGAAAAAGAAGATG

                            
        503 AAAGAAAAAGAAGATG
          1 AAAGAAAAAGAAGATG

             
        519 A
          1 A

        520 GTGTGAGATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15   12  0.75
  16    4  0.25

ACGTcount: A:0.72, C:0.00, G:0.22, T:0.06


Consensus pattern (16 bp):   
AAAGAAAAAGAAGATG
Done.