Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3370

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 455

Length: 759
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.29


Found at i:268 original size:48 final size:48

Alignment explanation


    Indices: 213--452  Score: 480
    Period size: 48  Copynumber: 5.0  Consensus size: 48

        203 GCAACACTAT

                                                            
        213 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG
          1 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

                                                            
        261 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG
          1 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

                                                            
        309 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG
          1 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

                                                            
        357 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG
          1 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

                                                            
        405 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG
          1 CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

        453 TATTTAAAAG


Statistics
Matches: 192,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  48  192  1.00

ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25


Consensus pattern (48 bp):   
CTTTGGCCCAAGGAATTCGTCATACACACCGATCATGAGTCCTTGAAG

Done.