Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: scaffold944
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3963
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Found at i:379 original size:132 final size:131
Alignment explanation
Indices: 1--742 Score: 895
Period size: 132 Copynumber: 5.6 Consensus size: 131
* * * * *
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCTAATATAGCGGAGAAGCAGATTTAAGTCATTA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATTAAGCCATTA
* * * * *
66 GTCCTTTCACCCTAAGTAGTAGTGGAGTAGGTTGAAAATTACAGATTCTGTCACCCTAAGCAGTA
66 GTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-GAGATTCTGTCACCCTAAGCAGTA
131 GT
130 GT
* * * * * * *
133 GCAGCGGATCGAAGATTGTGAATCATATCTT-CCAAGATAGTGGAGAAGTA-AATGTAAGCCATT
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAAT-TAAGCCATT
* * *
196 AGTCCAATCTCCCTAAGCAGTACTAGAGTAGGTT-AAGGATTGCAGATTCTGTCACCCTAAGCAG
65 AGTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAA-GATTG-AGATTCTGTCACCCTAAGCAG
260 TAGT
128 TAGT
* * * *
264 GGAGTAGATCGAAGATGGTGAATCTTATCTACCCATTACAGTAGAGAAGCAGAATTAAGCCATTA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATTAAGCCATTA
** * * *
329 AACCTATCTCCCAAAGCAGTAGTGGAGTAGGTTGAAGATTAGAGATTCTGTCACCTTAAACAGTA
66 GTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-GAGATTCTGTCACCCTAAGCAGTA
394 GT
130 GT
* * * * * *
396 TGAGCATATCGAATATGATGAATCTTATCTTCCCAATACAATGGAGAAGCA-AATTAAAGTCATT
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATT-AAGCCATT
* *
460 AATCCTATCAT-CCTAAGCAGTACTGGAGTAGGTTGAAGATTGGAGATTCTGTCACCCTAAGCAG
65 AGTCCTATC-TCCCTAAGCAGTAGTGGAGTAGGTTGAAGATT-GAGATTCTGTCACCCTAAGCAG
524 TAGT
128 TAGT
* * *
528 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATAGTGGAGAAGCAGATTTAAGCCAATA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATTAAGCCATTA
* * * *
593 GTCCTATCTCCCTAAGCCA-TAGTTGAGTTGGTTGAAGATTGCAGATTCTCTCACCCTAAACAGT
66 GTCCTATCTCCCTAAG-CAGTAGTGGAGTAGGTTGAAGATTG-AGATTCTGTCACCCTAAGCAGT
657 A-T
129 AGT
* * * * *
659 GAAGCAGATCGAATATGATGAATCTTATTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTA
1 GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATTAAGCCATTA
*
724 GTCCTATCACCCTAAGCAG
66 GTCCTATCTCCCTAAGCAG
743 ATTTAAGTCA
Statistics
Matches: 521, Mismatches: 75, Indels: 29
0.83 0.12 0.05
Matches are distributed among these distances:
130 6 0.01
131 185 0.36
132 318 0.61
133 12 0.02
ACGTcount: A:0.33, C:0.18, G:0.22, T:0.27
Consensus pattern (131 bp):
GGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAATTAAGCCATTA
GTCCTATCTCCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGAGATTCTGTCACCCTAAGCAGTAG
T
Found at i:746 original size:32 final size:32
Alignment explanation
Indices: 705--774 Score: 122
Period size: 32 Copynumber: 2.2 Consensus size: 32
695 TACAGTGGAG
705 AAGCAGATTTAAGCCATTAGTCCTATCACCCT
1 AAGCAGATTTAAGCCATTAGTCCTATCACCCT
* *
737 AAGCAGATTTAAGTCATTAGTCCTATCATCCT
1 AAGCAGATTTAAGCCATTAGTCCTATCACCCT
769 AAGCAG
1 AAGCAG
775 TAGTGGATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.29
Consensus pattern (32 bp):
AAGCAGATTTAAGCCATTAGTCCTATCACCCT
Found at i:877 original size:164 final size:163
Alignment explanation
Indices: 574--906 Score: 467
Period size: 164 Copynumber: 2.0 Consensus size: 163
564 TATAGTGGAG
*
574 AAGCAGATTTAAGCCAATAGTCCTATCTCCCTAAGCCATAGTTGAGTTGGTTGAAGATTGCAGAT
1 AAGCAGATTTAAGCCAATAGTCCTATCTCCCTAAGCCATAGTGGAGTTGGTTGAAGATTGCAGAT
* * *
639 TCTCTCACCCTAAACAGTATGAAGCAGATCGAATATGATGAATCTTATTTTCCCAATACAGTGGA
66 TCTCTCACCCTAAACAGTATGAAGCAGATCGAAGATGATGAATCTTATCTTCCCAACACAGTGGA
704 GAAGCAGATTTAAGCCATTAGTCCTATCACCCT
131 GAAGCAGATTTAAGCCATTAGTCCTATCACCCT
* * *
737 AAGCAGATTTAAGTCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGA-TTAGGTTGAAGATTGCT
1 AAGCAGATTTAAGCCAATAGTCCTATC-TCCCTAAGCCA-TAGTGGAGTT-GGTTGAAGATTGCA
* * * * *
799 GATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAACACT
63 GATTCTCTCACCCTAAACAGTA-TGAAGCAGATCGAAGA-TGATGAATCTTATCTTCCCAACACA
* *
863 GTGGAGAAGCAGATTTAAGTCATTAGTCCTATCATCCT
126 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCT
901 AAGCAG
1 AAGCAG
907 TAGTGGATTA
Statistics
Matches: 151, Mismatches: 14, Indels: 9
0.87 0.08 0.05
Matches are distributed among these distances:
162 4 0.03
163 69 0.46
164 76 0.50
165 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (163 bp):
AAGCAGATTTAAGCCAATAGTCCTATCTCCCTAAGCCATAGTGGAGTTGGTTGAAGATTGCAGAT
TCTCTCACCCTAAACAGTATGAAGCAGATCGAAGATGATGAATCTTATCTTCCCAACACAGTGGA
GAAGCAGATTTAAGCCATTAGTCCTATCACCCT
Found at i:974 original size:132 final size:132
Alignment explanation
Indices: 737--3045 Score: 2773
Period size: 132 Copynumber: 17.3 Consensus size: 132
727 CTATCACCCT
* * *
737 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
802 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
867 AG
131 AG
* * *
869 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
934 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
999 AG
131 AG
* * *
1001 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
1066 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
1131 AG
131 AG
* * *
1133 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
1198 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
1263 AG
131 AG
* * *
1265 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
*
1330 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
1395 AG
131 AG
* * *
1397 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* * ** * ****
1462 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAATATGGTGGAGCAGATCGAATATGGTGAATCT
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGAT--T-GTG-A-ATCTTATCTTCCCAA---
**
1527 TATCT-TCCCA-
123 TA-CTGT-GGAG
* ** * * * * * * *
1537 ACA-CTG-TGGAGAAGCAGATTTAAGT-C-ATTAGTCCT-ATCATCCTA-AGCAGTA-GTGGATT
1 A-AGCAGAT--TTAAGC-CA-TT-AGTCCTATCA-TCCTAAGCA--GTAGTGGAGTAGGTTGA--
* *
1595 AGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTT
55 AGATTGCAG-------ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTT
*
1660 ATCTTCCCAACACTGTGGAG
113 ATCTTCCCAATACTGTGGAG
* * * *
1680 AAGCAGATTTAAGCCACTAGTCCTATCATCCTAAGCAGTAGTAGAGTCGGTTGCAGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* *
1745 TCTGTCACCTTTA-CTAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA-TAG
66 TCTGTCACCTTAAGC-AGTAGTGGA-GCAGATCGAAGATTGTGAATCTTATCTTCCCAATACT-G
1807 TGGAG
128 TGGAG
* *
1812 AAACAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* * * * * * * *
1877 TCTGTCACCCTAAGCAGTTGTGGAGTAGATCGAAGATGGTGAATCTTATCTACCCATTACAGTAG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
1942 AG
131 AG
** * * * *
1944 AAGCAGATTTAAGCCATTAAACCTATC-TCCCAAATCAGTAGTGGAGTAGGTTAAAGATTACAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * **
2008 TTCTGTCACCTTAAACAGTAGTTGAGTAGATCGAATA-CGATGAATCTTATCTTCCCAATACAAT
65 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAATACTGT
2072 GGAG
129 GGAG
* * *
2076 AAGCAGATTTAAGCCACTAGTCCTATCACCCTAAGCAGTAGAT-GAGTAGGTTGAAGATTACAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAG-TGGAGTAGGTTGAAGATTGCAGA
* * * * * * *
2140 TTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAAT-GTAGT
65 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACT-GT
2204 GGAG
129 GGAG
* * *
2208 AAGCAGATTTAAGCCAATAGTCCTATC-TCCCTAAGCCA-TAGTGGAGTTGGTTGAATATTGCAG
1 AAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGAGTAGGTTGAAGATTGCAG
* * * * *
2271 ATTCTGTCACCCTAAACAGTAG-GGAAGCAGATCGAATA-TGATGAATCTTATTTTCCCAATACA
64 ATTCTGTCACCTTAAGCAGTAGTGG-AGCAGATCGAAGATTG-TGAATCTTATCTTCCCAATACT
2334 GTGGAG
127 GTGGAG
* *
2340 AAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* * * *
2405 TCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
2470 AG
131 AG
* * * * * *
2472 AGGTA-ATCTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCAGA
1 AAGCAGAT-TTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGA
* * * * * * *
2536 TTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCT-AATCTCATCTTCCTAATACAGA
65 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAATACTGT
2600 GGAG
129 GGAG
* * * *
2604 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTTGGTTGAAGATTACAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* * *
2669 TCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
66 TCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTG
*
2733 AAG
130 GAG
* * *
2736 AAACAGATTTAAGCCATTAGTCC-ATTCA-CCTTAAGCAGTACTGGAGTAGGTTGAAGATTGCAT
1 AAGCAGATTTAAGCCATTAGTCCTA-TCATCC-TAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * **
2799 ATTCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAAAG
64 ATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTG
2863 TGGAG
128 TGGAG
* * *
2868 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAATGGAGTCGGTTGAAGATTGTAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
* * * * * *
2933 TCAGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAGTCTTATCTTCCCAATACAGTG
66 TCTGTCACCTTAAGCAGTAGTGGA-GCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTG
2997 GAG
130 GAG
*
3000 AAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAG
3046 CAGATCGAAG
Statistics
Matches: 1929, Mismatches: 178, Indels: 140
0.86 0.08 0.06
Matches are distributed among these distances:
131 20 0.01
132 1738 0.90
133 18 0.01
134 1 0.00
135 2 0.00
136 1 0.00
137 8 0.00
139 13 0.01
140 14 0.01
141 17 0.01
142 19 0.01
143 16 0.01
144 12 0.01
146 8 0.00
147 1 0.00
148 2 0.00
149 1 0.00
151 38 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (132 bp):
AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGAT
TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACTGTGG
AG
Found at i:1207 original size:264 final size:264
Alignment explanation
Indices: 737--3045 Score: 3090
Period size: 264 Copynumber: 8.7 Consensus size: 264
727 CTATCACCCT
*
737 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* *
802 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
* * *
867 AGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* *
932 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGT
196 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACAGT
997 GGAG
261 GGAG
*
1001 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* *
1066 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
* * *
1131 AGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* *
1196 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGT
196 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACAGT
1261 GGAG
261 GGAG
*
1265 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* *
1330 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
* * *
1395 AGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
1460 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAATATGGTGGAGCAGATCGAATATGGTGAAT
196 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATC------------G-A-A--G-AT-T-GTGAAT
* *
1525 CTTATCTTCCCAACACTGTGGAG
242 CTTATCTTCCCAATACAGTGGAG
*
1548 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* *
1613 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
* * * *
1678 AGAAGCAGATTTAAGCCACTAGTCCTATCATCCTAAGCAGTAGTAGAGTCGGTTGCAGATTGCAG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * *
1743 ATTCTGTCACCTTTA-CTAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATA
196 ATTCTGTCACCTTAAGC-AGTAGTGGA-GCAGATCGAAGATTGTGAATCTTATCTTCCCAATACA
1806 GTGGAG
259 GTGGAG
* * * *
1812 AAACAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAGGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* * * ** * *
1877 TCTGTCACCCTAAGCAGTTGTGGAGTAGATCGAAGATGGTGAATCTTATCTACCCATTACAGTAG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
** * * * *
1942 AGAAGCAGATTTAAGCCATTAAACCTATC-TCCCAAATCAGTAGTGGAGTAGGTTAAAGATTACA
131 AGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * *
2006 GATTCTGTCACCTTAAACAGTAGTTGAGTAGATCGAATA-CGATGAATCTTATCTTCCCAATACA
195 GATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAATACA
*
2070 ATGGAG
259 GTGGAG
* * * * *
2076 AAGCAGATTTAAGCCACTAGTCCTATCACCCTAAGCAGTAGAT-GAGTAGGTTGAAGATTACAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAG-TGGATTAGGTTGAAGATTGCTGA
* * * * **
2140 TTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAA-TGTAGT
65 TTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACT-GT
* * *
2204 GGAGAAGCAGATTTAAGCCAATAGTCCTATC-TCCCTAAGCCA-TAGTGGAGTTGGTTGAATATT
129 GGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGAGTAGGTTGAAGATT
* * * *
2267 GCAGATTCTGTCACCCTAAACAGTAG-GGAAGCAGATCGAATA-TGATGAATCTTATTTTCCCAA
192 GCAGATTCTGTCACCTTAAGCAGTAGTGG-AGCAGATCGAAGATTG-TGAATCTTATCTTCCCAA
2330 TACAGTGGAG
255 TACAGTGGAG
* * * *
2340 AAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
* * * *
2405 TCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGG
66 TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
* * * * * *
2470 AGAGGTA-ATCTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCA
131 AGAAGCAGAT-TTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * * * *
2534 GATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCT-AATCTCATCTTCCTAATACA
195 GATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAATACA
*
2598 GAGGAG
259 GTGGAG
* * * *
2604 AAGCAGATTTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTT-GGTTGAAGATTACAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGA-TTAGGTTGAAGATTGCTGA
* *
2668 TTCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
65 TTCTGTCACCCTAAGC-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGT
* * *
2732 GAAGAAACAGATTTAAGCCATTAGTCC-ATTCA-CCTTAAGCAGTACTGGAGTAGGTTGAAGATT
129 GGAGAAGCAGATTTAAGCCATTAGTCCTA-TCATCC-TAAGCAGTAGTGGAGTAGGTTGAAGATT
* * *
2795 GCATATTCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
192 GCAGATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAAT
*
2859 AAAGTGGAG
256 ACAGTGGAG
* * *
2868 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAATGGAGTCGGTTGAAGATTG-TAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCT-GA
* * * * *
2932 TTCAGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAGTCTTATCTTCCCAATACAGT
65 TTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGT
*
2996 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
129 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAG
3046 CAGATCGAAG
Statistics
Matches: 1859, Mismatches: 137, Indels: 98
0.89 0.07 0.05
Matches are distributed among these distances:
263 15 0.01
264 1568 0.84
265 16 0.01
266 2 0.00
267 1 0.00
269 1 0.00
270 1 0.00
271 1 0.00
276 1 0.00
277 1 0.00
278 1 0.00
280 1 0.00
281 2 0.00
282 4 0.00
283 244 0.13
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (264 bp):
AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
TCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGG
AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAATACAGT
GGAG
Found at i:1505 original size:19 final size:19
Alignment explanation
Indices: 1481--1521 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
1471 TTAAGCAGTA
1481 GTGGAGCAGATCGAATATG
1 GTGGAGCAGATCGAATATG
1500 GTGGAGCAGATCGAATATG
1 GTGGAGCAGATCGAATATG
1519 GTG
1 GTG
1522 AATCTTATCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.29, C:0.10, G:0.39, T:0.22
Consensus pattern (19 bp):
GTGGAGCAGATCGAATATG
Found at i:1623 original size:151 final size:151
Alignment explanation
Indices: 1349--1646 Score: 578
Period size: 151 Copynumber: 2.0 Consensus size: 151
1339 TTAAGCAGTA
*
1349 GTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGGAGAAGCAGATTTAAGTCAT
1 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGGAGAAGCAGATTTAAGTCAT
1414 TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAG
66 TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAG
1479 TAGTGGAGCAGATCGAATATG
131 TAGTGGAGCAGATCGAATATG
*
1500 GTGGAGCAGATCGAATATGGTGAATCTTATCTTCCCAACACTGTGGAGAAGCAGATTTAAGTCAT
1 GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGGAGAAGCAGATTTAAGTCAT
1565 TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAG
66 TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAG
1630 TAGTGGAGCAGATCGAA
131 TAGTGGAGCAGATCGAA
1647 GATTGTGAAT
Statistics
Matches: 145, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 145 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (151 bp):
GTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAACACTGTGGAGAAGCAGATTTAAGTCAT
TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGATTCTGTCACCTTAAGCAG
TAGTGGAGCAGATCGAATATG
Found at i:3045 original size:396 final size:396
Alignment explanation
Indices: 737--3045 Score: 3128
Period size: 396 Copynumber: 5.8 Consensus size: 396
727 CTATCACCCT
* *
737 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
*
802 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACAGTGG
* * *
867 AGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * * *
932 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGT
196 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
*
997 GGAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGA-TTAGGTTGAAGATTG
261 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTT-GGTTGAAGATTG
* * * *
1061 CTGATTCTGTCACCTTAA-GCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACA
325 CAGATTCTGTCACCCTAACG-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
*
1125 CTGTGGAG
389 CAGTGGAG
* *
1133 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
*
1198 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACAGTGG
* * *
1263 AGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * * *
1328 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGT
196 ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
*
1393 GGAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGA-TTAGGTTGAAGATTG
261 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTT-GGTTGAAGATTG
* *
1457 CTGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAATATGGTGGAGCAGATCGAATATGGTG
325 CAGATTCTGTCACC-----C--TA----A-C-GA--G--TA--GTGGAGCAGATCGAAGATGGTG
* *
1522 AATCTTATCTTCCCAACACTGTGGAG
371 AATCTTATCTTCCCAATACAGTGGAG
* *
1548 AAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
*
1613 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACAGTGG
* * * *
1678 AGAAGCAGATTTAAGCCACTAGTCCTATCATCCTAAGCAGTAGTAGAGTCGGTTGCAGATTGCAG
131 AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
* * *
1743 ATTCTGTCACCTTTA-CTAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATA
196 ATTCTGTCACCCTAAGC-AGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
* * *
1806 GTGGAGAAACAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAGGATT
259 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTTGGTTGAAGATT
* * * *
1871 GCAGATTCTGTCACCCTAA-GCAGTTGTGGAGTAGATCGAAGATGGTGAATCTTATCTACCCATT
324 GCAGATTCTGTCACCCTAACG-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
*
1935 ACAGTAGAG
388 ACAGTGGAG
** * * * * *
1944 AAGCAGATTTAAGCCATTAAACCTATC-TCCCAAATCAGTAGTGGAGTAGGTTAAAGATTACAGA
1 AAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGA
* * * * * * *
2008 TTCTGTCACCTTAAACAGTAGTTGAGTAGATCGAATA-CGATGAATCTTATCTTCCCAATACAAT
65 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTG-TGAATCTTATCTTCCCAACACAGT
* * *
2072 GGAGAAGCAGATTTAAGCCACTAGTCCTATCACCCTAAGCAGTAGAT-GAGTAGGTTGAAGATTA
129 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAG-TGGAGTAGGTTGAAGATTG
* * * * **
2136 CAGATTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAATGT
193 CAGATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* *
2201 AGTGGAGAAGCAGATTTAAGCCAATAGTCCTATC-TCCCTAAGCCA-TAGTGGAGTTGGTTGAAT
258 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGAGTTGGTTGAAG
* * *
2264 ATTGCAGATTCTGTCACCCTAAAC-AGTAG-GGAAGCAGATCGAATATGATGAATCTTATTTTCC
321 ATTGCAGATTCTGTCACCCT-AACGAGTAGTGG-AGCAGATCGAAGATGGTGAATCTTATCTTCC
2327 CAATACAGTGGAG
384 CAATACAGTGGAG
* * *
2340 AAGCAGATTTAAGCAATTAGTCCTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGAT
1 AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
* * * *
2405 TCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTGG
66 TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACAGTGG
* * * * * *
2470 AGAGGTA-ATCTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGCA
131 AGAAGCAGAT-TTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
* * *
2534 GATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCT-AATCTCATCTTCCTAATACA
195 GATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGG-TGAATCTTATCTTCCCAATACA
* * *
2598 GAGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTTGGTTGAAGATT
259 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTTGGTTGAAGATT
*
2663 ACAGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
324 GCAGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATA
*
2728 CAGTGAAG
389 CAGTGGAG
* *
2736 AAACAGATTTAAGCCATTAGTCC-ATTCA-CCTTAAGCAGTACTGGAGTAGGTTGAAGATTGCAT
1 AAGCAGATTTAAGCCATTAGTCCTA-TCATCC-TAAGCAGTAGTGGAGTAGGTTGAAGATTGC-T
* * * *
2799 -ATTCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAAA
63 GATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACA
* *
2862 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAATGGAGTCGGTTGAAGATT
127 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATT
* * * *
2927 GTAGATTCAGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAGTCTTATCTTCCCAAT
192 GCAGATTCTGTCACCCTAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAAT
*
2991 ACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
256 ACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAG
3046 CAGATCGAAG
Statistics
Matches: 1731, Mismatches: 132, Indels: 100
0.88 0.07 0.05
Matches are distributed among these distances:
395 20 0.01
396 1317 0.76
397 14 0.01
398 1 0.00
400 1 0.00
401 1 0.00
402 1 0.00
403 2 0.00
404 1 0.00
407 1 0.00
408 2 0.00
409 1 0.00
410 2 0.00
411 1 0.00
413 2 0.00
414 3 0.00
415 360 0.21
416 1 0.00
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (396 bp):
AAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCTGAT
TCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACAGTGG
AGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAG
ATTCTGTCACCCTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTTGGTTGAAGATTGC
AGATTCTGTCACCCTAACGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
GTGGAG
Found at i:3096 original size:88 final size:88
Alignment explanation
Indices: 2947--3397 Score: 766
Period size: 88 Copynumber: 5.1 Consensus size: 88
2937 TCACCCTAAC
*
2947 CAGTAGT-GATGCAGATCGAAGATGGTGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
1 CAGTAGTGGA-GCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
3011 AGCCATTAGTCCTATCATCTTAAG
65 AGCCATTAGTCCTATCATCTTAAG
3035 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
1 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
3100 GCCATTAGTCCTATCATCTTAAG
66 GCCATTAGTCCTATCATCTTAAG
3123 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
1 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
3188 GCCATTAGTCCTATCATCTTAAG
66 GCCATTAGTCCTATCATCTTAAG
3211 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
1 CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
3276 GCCATTAGTCCTATCATCTTAAG
66 GCCATTAGTCCTATCATCTTAAG
* * * * *
3299 CAGTAGTGGAGCAGATCGAATAT-GATGAATCTTATCTTCCCAATGCAGTGGAGAAACAGGTTTA
1 CAGTAGTGGAGCAGATCGAAGATGGA-GAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTA
*
3363 AGCCATTAATCC-ATTCA-CTTTAAG
65 AGCCATTAGTCCTA-TCATC-TTAAG
*
3387 CAGTACTGGAG
1 CAGTAGTGGAG
3398 TAGGTTGAAA
Statistics
Matches: 351, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
87 4 0.01
88 345 0.98
89 2 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (88 bp):
CAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAA
GCCATTAGTCCTATCATCTTAAG
Found at i:3218 original size:396 final size:394
Alignment explanation
Indices: 737--3309 Score: 2753
Period size: 396 Copynumber: 6.4 Consensus size: 394
727 CTATCACCCT
* * * * * * *
737 AAGCAGATTTAAGTCAT-TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGA
1 AAGCAGATTTAAG-CATATAGTCCTATCTTCCCAAACAGTGGAGGAGTAGGTTGAAGATT-CAGA
* * *
801 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTG
64 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
* * * *
866 GAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCT
129 GAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCA
* * * *
931 GATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACT
194 GATTCTGTCACCCTAA-CTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
* *
995 GTGGAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATT
258 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATT
* * * * * * *
1060 GCTGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACA
323 GCAGATTCTGTCACCCTAAACAGTGGTGAAGCAGATCGAAGA-TGTGAATCTTATCATCCCAATA
* *
1125 CTGTGGAG
387 CAGTAGAG
* * * * * * *
1133 AAGCAGATTTAAGTCAT-TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGA
1 AAGCAGATTTAAG-CATATAGTCCTATCTTCCCAAACAGTGGAGGAGTAGGTTGAAGATT-CAGA
* * *
1197 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTG
64 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
* * * *
1262 GAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCT
129 GAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCA
* * * *
1327 GATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACT
194 GATTCTGTCACCCTAA-CTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
* *
1391 GTGGAGAAGCAGATTTAAGTCATTAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATT
258 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATT
* * * *
1456 GCTGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAATATGGTGGAGCAGATCGAATATGGT
323 GCAGATTCTGTCACC-----C-----T--A--A-A-C--A-GTGGTGAAGCAGATCGAAGAT-GT
* * * *
1521 GAATCTTATCTTCCCAACACTGTGGAG
368 GAATCTTATCATCCCAATACAGTAGAG
* * * * * * *
1548 AAGCAGATTTAAGTCAT-TAGTCCTATCATCCTAAGCAGTAGTGGATTAGGTTGAAGATTGCTGA
1 AAGCAGATTTAAG-CATATAGTCCTATCTTCCCAAACAGTGGAGGAGTAGGTTGAAGATT-CAGA
* * *
1612 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATTGTGAATCTTATCTTCCCAACACTGTG
64 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
* * *
1677 GAGAAGCAGATTTAAGCCACTAGTCCTATCATCCTAAGCAGTAGTAGAGTCGGTTGCAGATTGCA
129 GAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCA
* * *
1742 GATTCTGTCACCTTTACTAGTAGT-GATGCAGATCGAAGATGGTGAATCTTATCTTCCCAATATA
194 GATTCTGTCACCCTAACTAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
* *
1806 GTGGAGAAACAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAGGATT
258 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATT
* * * * *
1871 GCAGATTCTGTCACCCTAAGCAGTTGTGGAGTAGATCGAAGATGGTGAATCTTATC-TACCCATT
323 GCAGATTCTGTCACCCTAAACAGTGGTGAAGCAGATCGAAGAT-GTGAATCTTATCAT-CCCAAT
1935 ACAGTAGAG
386 ACAGTAGAG
** * * *
1944 AAGCAGATTTAAGCCAT-TAAACCTATC-TCCCAAATCAGTAGTGGAGTAGGTTAAAGATTACAG
1 AAGCAGATTTAAG-CATATAGTCCTATCTTCCCAAA-CAGTGGAGGAGTAGGTTGAAGATT-CAG
* * * * * * *
2007 ATTCTGTCACCTTAAACAGTAGTTGAGTAGATCGAATACGATGAATCTTATCTTCCCAATACAAT
63 ATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGT
* * * *
2072 GGAGAAGCAGATTTAAGCCACTAGTCCTATCACCCTAAGCAGTAGAT-GAGTAGGTTGAAGATTA
128 GGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAG-TGGAGTCGGTTGAAGATTG
* * * * **
2136 CAGATTCTGTCACCCTAAGTAATAGTGGAGGAGATCGAAGATGGTGAATCTTATCATCCCAATGT
192 CAGATTCTGTCACCCTAACTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
* * *
2201 AGTGGAGAAGCAGATTTAAGCCAATAGTCCTATC-TCCCTAAGCCA-TAGTGGAGTTGGTTGAAT
257 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCAT-CCTAAG-CAGTAGTGGAGTAGGTTGAAG
* **
2264 ATTGCAGATTCTGTCACCCTAAACAGTAGG-GAAGCAGATCGAATATGATGAATCTTATTTTCCC
320 ATTGCAGATTCTGTCACCCTAAACAGT-GGTGAAGCAGATCGAAGATG-TGAATCTTATCATCCC
*
2328 AATACAGTGGAG
383 AATACAGTAGAG
* * * *
2340 AAGCAGATTTAAGCA-ATTAGTCCTATCATCCTAAGCAGTGGTGGAGTAGGTTGAAGATTGCAGA
1 AAGCAGATTTAAGCATA-TAGTCCTATCTTCCCAAACAGTGGAGGAGTAGGTTGAAGATT-CAGA
* * *
2404 TTCTGTCACCCTAAGCAGTAGTGGAGTAGATCGAAGATAGTGAATCTTATCTTCCCAATACAGTG
64 TTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
* * * * *
2469 GAGAGGTA-ATCTTAAGCCATTAGTCCTATCACCCTAAGAAGTAGTGGAGTCGGTTAAAGATTGC
129 GAGAAGCAGAT-TTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGC
* * *
2533 AGATTCTGTCACCCTAAGTAGTAGTGGAGCAGATCGAAGATGGCT-AATCTCATCTTCCTAATAC
193 AGATTCTGTCACCCTAACTAGTAGTGGAGCAGATCGAAGATGG-TGAATCTTATCTTCCCAATAC
* * * *
2597 AGAGGAGAAGCAGATTTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTTGGTTGAAGAT
257 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGAT
* * * *
2662 TACAGATTCTGTCACCCT-AACGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAA
322 TGCAGATTCTGTCACCCTAAAC-AGTGGTGAAGCAGATCGAAGAT-GTGAATCTTATCATCCCAA
2726 TACAGT-GAAG
385 TACAGTAG-AG
* * ***
2736 AAACAGATTTAAGCCAT-TAGTCC-A--TTCACCTTAAGCAGTACTGGAGTAGGTTGAAGATTGC
1 AAGCAGATTTAAG-CATATAGTCCTATCTTC-CC--AAACAGTGGAGGAGTAGGTTGAAGATT-C
* * *
2797 ATATTCTGTCACCCTAA-CGAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAA
61 AGATTCTGTCACCTTAAGC-AGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATAC
*
2861 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAATGGAGTCGGTTGAAGAT
125 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGAT
* * * *
2926 TGTAGATTCAGTCACCCTAACCAGTAGT-GATGCAGATCGAAGATGGTGAGTCTTATCTTCCCAA
190 TGCAGATTCTGTCACCCTAACTAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAA
* * * *
2990 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAA
254 TACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAA
* * * * * ** * *
3055 GA-TGGAGAGTCTTATCTTCCC-AATACAGTGGAGAAGCAGATTTAAGCCAT-T-AGTCCTATCA
319 GATTGCAGATTC-TGTC-ACCCTAA-ACAGTGGTGAAGCAGATCGAAG--ATGTGAATCTTATCA
** * *
3116 TCTTAA-GCAGTAGTG
379 TCCCAATACAGTAGAG
* ** * * * * * *
3131 GAGCAGATCGAAG-ATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATT-
1 AAGCAGATTTAAGCAT--ATAGTCCTATCTTCCCAA-ACAGTGGAGGAGTAGGTTGAAG--ATTC
* * * * *
3194 AG-TCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACA
61 AGATTCTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACA
*
3258 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
126 GTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAG
3310 CAGATCGAAT
Statistics
Matches: 1924, Mismatches: 184, Indels: 138
0.86 0.08 0.06
Matches are distributed among these distances:
393 4 0.00
394 1 0.00
395 45 0.02
396 1430 0.74
397 56 0.03
398 4 0.00
399 9 0.00
401 1 0.00
403 1 0.00
405 1 0.00
406 1 0.00
408 1 0.00
410 2 0.00
412 1 0.00
414 5 0.00
415 362 0.19
ACGTcount: A:0.31, C:0.18, G:0.23, T:0.28
Consensus pattern (394 bp):
AAGCAGATTTAAGCATATAGTCCTATCTTCCCAAACAGTGGAGGAGTAGGTTGAAGATTCAGATT
CTGTCACCTTAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGA
GAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGA
TTCTGTCACCCTAACTAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTG
GAGAAGCAGATTTAAGCCATTAGTCCTATCATCCTAAGCAGTAGTGGAGTAGGTTGAAGATTGCA
GATTCTGTCACCCTAAACAGTGGTGAAGCAGATCGAAGATGTGAATCTTATCATCCCAATACAGT
AGAG
Found at i:3463 original size:132 final size:132
Alignment explanation
Indices: 3295--3963 Score: 912
Period size: 132 Copynumber: 5.1 Consensus size: 132
3285 CCTATCATCT
* * * * *
3295 TAAGCAGTAGTGGAGCAGATCGAATATGATGAATCTTATCTTCCCAATGCAGTGGAGAAACAGGT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * * *
3360 TTAAGCCATTAATCC-ATTCACTTTAAGCAGTACTGGAGTAGGTTGAAAATTACAGATTCTGTCA
66 TTAAGCCATTAGTCCTA-TCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
*
3424 CCG
130 CCC
* * *
3427 TAAGGAGTGGTGGAGCAGATCGAAGATGGTGAATCTTATTTTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* *
3492 TTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAGTCGGTTGAAGATTGCAGATTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
*
3557 CT
131 CC
* * * *
3559 TAACCAATAGT-GATGCAGATTGAAGATGGTGATTCTTATCTTCCCAATACAGTGGAGAAGCAGA
1 TAAGCAGTAGTGGA-GCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGA
* * * *
3623 TTTAAGCCATTAGTCCTATCACCGTAAGAAGTAGTGGAGTCGGTTCAAGATTGCAGATTCTGTCA
65 TTTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
3688 CCC
130 CCC
* * * *
3691 TAAGTAGTAGTGGAGCAGATCGAAGATGGTTAATCTTATCTTCCTAATACAGAGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
* * * *
3756 TTAAGCCATTAGTCCTATCACCCTAAACAGTAGTGGAGTAGGTTGAAGATTACAGACTCTGTCAC
66 TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
3821 CC
131 CC
* * * *
3823 TAAACAGTAGTTGAGCAGATCGAATATGATGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
1 TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
*** *
3888 TTAAGCCATTAGTCC-ATTCACCTTAAGCAGTACAAGAGTATGTTGAAGATTGCAGATTCTGTCA
66 TTAAGCCATTAGTCCTA-TCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCA
3952 CCC
130 CCC
*
3955 TAAACAGTA
1 TAAGCAGTA
Statistics
Matches: 474, Mismatches: 59, Indels: 8
0.88 0.11 0.01
Matches are distributed among these distances:
131 3 0.01
132 468 0.99
133 3 0.01
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (132 bp):
TAAGCAGTAGTGGAGCAGATCGAAGATGGTGAATCTTATCTTCCCAATACAGTGGAGAAGCAGAT
TTAAGCCATTAGTCCTATCACCTTAAGCAGTAGTGGAGTAGGTTGAAGATTGCAGATTCTGTCAC
CC
Found at i:3647 original size:220 final size:217
Alignment explanation
Indices: 3127--3661 Score: 531
Period size: 220 Copynumber: 2.4 Consensus size: 217
3117 CTTAAGCAGT
* * *
3127 AGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
1 AGTGGAGCAGATTGAAGATGGTGATTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
* * * *
3192 TTAGTCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAAGATGGAGAGTCTTATCTTCCCAATAC
66 TTAGTCCTATCACCGTAAGAAGTAGTGGAGCAGATCGAAGATGGAGAATCTTATCTTCCCAATAC
*
3257 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAATAT
131 AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAAGAT
* *
3322 GATGAATCTTATCTTCCCAATGC
196 GATGAATCTTACCTTACCAAT-C
* * * * ** * *
3345 AGTGGAGAAACAGGTTTAAGCCAT--TAATCCATTCA-CTTTAAGCAGTAC--TGGAGTAG--G-
1 AGTGGAG---CAGATTGAAG--ATGGTGATTC-TT-ATC-TT-CCCAATACAGTGGAGAAGCAGA
* * * * * * *
3402 TTGAA--AATTACAGATTCTGTCACCGTAAGGAGTGGTGGAGCAGATCGAAGATGGTGAATCTTA
57 TTTAAGCCATT--AG-TCCTATCACCGTAAGAAGTAGTGGAGCAGATCGAAGATGGAGAATCTTA
*
3465 TTTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
119 TCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAG
* * *
3530 TC-GGTTGAAGATTGCA-GATTCTGTCACCTTAACCAAT-
184 -CAGATCGAAGA-TG-ATGAATCT-T-ACCTT-ACCAATC
3567 AGT-GATGCAGATTGAAGATGGTGATTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
1 AGTGGA-GCAGATTGAAGATGGTGATTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCC
3631 ATTAGTCCTATCACCGTAAGAAGTAGTGGAG
65 ATTAGTCCTATCACCGTAAGAAGTAGTGGAG
3662 TCGGTTCAAG
Statistics
Matches: 246, Mismatches: 42, Indels: 56
0.72 0.12 0.16
Matches are distributed among these distances:
216 5 0.02
217 8 0.03
218 17 0.07
219 18 0.07
220 135 0.55
221 25 0.10
222 16 0.07
223 12 0.05
224 10 0.04
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.27
Consensus pattern (217 bp):
AGTGGAGCAGATTGAAGATGGTGATTCTTATCTTCCCAATACAGTGGAGAAGCAGATTTAAGCCA
TTAGTCCTATCACCGTAAGAAGTAGTGGAGCAGATCGAAGATGGAGAATCTTATCTTCCCAATAC
AGTGGAGAAGCAGATTTAAGCCATTAGTCCTATCATCTTAAGCAGTAGTGGAGCAGATCGAAGAT
GATGAATCTTACCTTACCAATC
Done.