Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold789

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6499
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.28


Found at i:2289 original size:28 final size:29

Alignment explanation


    Indices: 2257--2316  Score: 77
    Period size: 29  Copynumber: 2.1  Consensus size: 29

       2247 GCACAGACAT

                                         
       2257 AGATAA-GTCTACTAGGACAGCAAACACA
          1 AGATAACGTCTACTAGGACAGCAAACACA

                       *  *      *     * 
       2285 AGATAACGTCTGCTGGGACAGTAAACATA
          1 AGATAACGTCTACTAGGACAGCAAACACA

               
       2314 AGA
          1 AGA

       2317 ACTGTTCGCC


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  28    6  0.22
  29   21  0.78

ACGTcount: A:0.43, C:0.18, G:0.22, T:0.17


Consensus pattern (29 bp):   
AGATAACGTCTACTAGGACAGCAAACACA

Done.