Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 112 of 163
Found at i:36140797 original size:14 final size:14
Alignment explanation
Indices: 36140778--36140804 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36140768 CATGATAAAA
36140778 TAAAATACAAGTGG
1 TAAAATACAAGTGG
36140792 TAAAATACAAGTG
1 TAAAATACAAGTG
36140805 TGCAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGG
Found at i:36145494 original size:14 final size:14
Alignment explanation
Indices: 36145475--36145501 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
36145465 CATGATAAAA
36145475 TAAAATACAAGTGG
1 TAAAATACAAGTGG
36145489 TAAAATACAAGTG
1 TAAAATACAAGTG
36145502 TGAAAGAGAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.19, T:0.22
Consensus pattern (14 bp):
TAAAATACAAGTGG
Found at i:36147441 original size:3 final size:3
Alignment explanation
Indices: 36147435--36147460 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
36147425 GGAGGAGGAG
36147435 GAC GAC GAC GAC GAC GAC GAC GAC GA
1 GAC GAC GAC GAC GAC GAC GAC GAC GA
36147461 TGATGGTAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.31, G:0.35, T:0.00
Consensus pattern (3 bp):
GAC
Found at i:36150407 original size:17 final size:17
Alignment explanation
Indices: 36150385--36150417 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
36150375 TGTTTATATA
*
36150385 TTAATTTTTTATGTATT
1 TTAATTTCTTATGTATT
36150402 TTAATTTCTTATGTAT
1 TTAATTTCTTATGTAT
36150418 ATTTGGCAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.03, G:0.06, T:0.67
Consensus pattern (17 bp):
TTAATTTCTTATGTATT
Found at i:36150933 original size:242 final size:243
Alignment explanation
Indices: 36150499--36150988 Score: 973
Period size: 242 Copynumber: 2.0 Consensus size: 243
36150489 ATCTTTTAAA
36150499 ATTTTTACTTTTTAAAAGAATTTTGATTTTTAATAATATAAAATAAGACTAAATTGAAAGAAAGT
1 ATTTTTACTTTTTAAAAGAATTTTGATTTTTAATAATATAAAATAAGACTAAATTGAAAGAAAGT
36150564 ATAAAAGTTGAGGACTATCTTTATTATTATTTCAATTAAAAAAGTGTCACTTGATGCTTTCATTA
66 ATAAAAGTTGAGGACTATCTTTATTATTATTTCAATTAAAAAAGTGTCACTTGATGCTTTCATTA
36150629 GTCACTTAATGGTTAAGTGACAAAAAAAACAATTTAAAAATTTGTTAAACGGTTAAAACAAAAAT
131 GTCACTTAATGGTTAAGTGACAAAAAAAACAATTTAAAAATTTGTTAAACGGTTAAAACAAAAAT
36150694 TATACATAATTGAGTGACTGTTAATAAAGTTTACCTTAAACAAAAAAG
196 TATACATAATTGAGTGACTGTTAATAAAGTTTACCTTAAACAAAAAAG
36150742 ATTTTTAC-TTTTAAAAGAATTTTGATTTTTAATAATATAAAATAAGACTAAATTGAAAGAAAGT
1 ATTTTTACTTTTTAAAAGAATTTTGATTTTTAATAATATAAAATAAGACTAAATTGAAAGAAAGT
36150806 ATAAAAGTTGAGGACTATCTTTATTATTATTTCAATTAAAAAAGTGTCACTTGATGCTTTCATTA
66 ATAAAAGTTGAGGACTATCTTTATTATTATTTCAATTAAAAAAGTGTCACTTGATGCTTTCATTA
36150871 GTCACTTAATGGTTAAGTGACAAAAAAAACAATTTAAAAATTTGTTAAACGGTTAAAACAAAAAT
131 GTCACTTAATGGTTAAGTGACAAAAAAAACAATTTAAAAATTTGTTAAACGGTTAAAACAAAAAT
36150936 TATACATAATTGAGTGACTGTTAATAAAGTTTACCTTAAACAAAAAAG
196 TATACATAATTGAGTGACTGTTAATAAAGTTTACCTTAAACAAAAAAG
36150984 ATTTT
1 ATTTT
36150989 AACATCAAAA
Statistics
Matches: 247, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
242 239 0.97
243 8 0.03
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.36
Consensus pattern (243 bp):
ATTTTTACTTTTTAAAAGAATTTTGATTTTTAATAATATAAAATAAGACTAAATTGAAAGAAAGT
ATAAAAGTTGAGGACTATCTTTATTATTATTTCAATTAAAAAAGTGTCACTTGATGCTTTCATTA
GTCACTTAATGGTTAAGTGACAAAAAAAACAATTTAAAAATTTGTTAAACGGTTAAAACAAAAAT
TATACATAATTGAGTGACTGTTAATAAAGTTTACCTTAAACAAAAAAG
Found at i:36151853 original size:15 final size:15
Alignment explanation
Indices: 36151833--36151863 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
36151823 GTTATGTAAG
36151833 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
36151848 TGAAAGGTCAAGAGT
1 TGAAAGGTCAAGAGT
36151863 T
1 T
36151864 ATGTTGTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.23
Consensus pattern (15 bp):
TGAAAGGTCAAGAGT
Found at i:36156609 original size:53 final size:53
Alignment explanation
Indices: 36156529--36156687 Score: 318
Period size: 53 Copynumber: 3.0 Consensus size: 53
36156519 ACAAACACTC
36156529 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
1 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
36156582 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
1 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
36156635 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
1 TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
36156688 ACCAATATCT
Statistics
Matches: 106, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 106 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (53 bp):
TTATAGTCCATTATTCCTAACGTAAGCAAGTTGAATTCTCCCAAATACCTTAG
Found at i:36157232 original size:43 final size:43
Alignment explanation
Indices: 36157163--36157255 Score: 116
Period size: 43 Copynumber: 2.2 Consensus size: 43
36157153 CGTGTGTCTA
36157163 CCCGTGTGTATATTCGAAATAGGGTCACACGGCCGTGTCACAG
1 CCCGTGTGTATATTCGAAATAGGGTCACACGGCCGTGTCACAG
* ** * *
36157206 CCCGTGTGTGTATTCGATGTTA-GGTCACACGGCTGTGTCGCAG
1 CCCGTGTGTATATTCGA-AATAGGGTCACACGGCCGTGTCACAG
*
36157249 GCCGTGT
1 CCCGTGT
36157256 ACGAGACCGT
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 41 0.95
44 2 0.05
ACGTcount: A:0.17, C:0.25, G:0.31, T:0.27
Consensus pattern (43 bp):
CCCGTGTGTATATTCGAAATAGGGTCACACGGCCGTGTCACAG
Found at i:36157703 original size:36 final size:36
Alignment explanation
Indices: 36157656--36157729 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
36157646 TCCTTATGAT
36157656 GATATTAACCATTGGTGGTGTTAATGGACATTAATG
1 GATATTAACCATTGGTGGTGTTAATGGACATTAATG
36157692 GATATTAACCATTGGTGGTGTTAATGGACATTAATG
1 GATATTAACCATTGGTGGTGTTAATGGACATTAATG
36157728 GA
1 GA
36157730 CATACATTAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.31, C:0.08, G:0.26, T:0.35
Consensus pattern (36 bp):
GATATTAACCATTGGTGGTGTTAATGGACATTAATG
Found at i:36162416 original size:21 final size:22
Alignment explanation
Indices: 36162390--36162432 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 22
36162380 AAGTTGAATT
36162390 TAAAGTTATGAAT-TAT-ATATA
1 TAAAGTT-TGAATGTATGATATA
36162411 TAAAGTTTGAATGTATGATATA
1 TAAAGTTTGAATGTATGATATA
36162433 AGTTCTTTGA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
20 5 0.25
21 10 0.50
22 5 0.25
ACGTcount: A:0.44, C:0.00, G:0.14, T:0.42
Consensus pattern (22 bp):
TAAAGTTTGAATGTATGATATA
Found at i:36162431 original size:20 final size:21
Alignment explanation
Indices: 36162390--36162433 Score: 56
Period size: 20 Copynumber: 2.1 Consensus size: 21
36162380 AAGTTGAATT
*
36162390 TAAAGTTATGAATTATATATA
1 TAAAGTTATGAATTATAGATA
36162411 TAAAGTT-TGAATGTAT-GATA
1 TAAAGTTATGAAT-TATAGATA
36162431 TAA
1 TAA
36162434 GTTCTTTGAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
20 11 0.52
21 10 0.48
ACGTcount: A:0.45, C:0.00, G:0.14, T:0.41
Consensus pattern (21 bp):
TAAAGTTATGAATTATAGATA
Found at i:36162541 original size:65 final size:64
Alignment explanation
Indices: 36162472--36162658 Score: 171
Period size: 64 Copynumber: 2.9 Consensus size: 64
36162462 ATTATATATA
* * * * *
36162472 TATATATGCACATATGGTTCGAATATATATATT-TAAAGTTCTTGAGCTGTATTTAATGTATGAA
1 TATATATACACATATGGTTC-AA-ATATAGATTACAAAGTTCTTGAGCGGAATTTAATGTATGAA
36162536 T
64 T
* * * *
36162537 TATATATACATATGTGGTTCAAATATAGGTTACAAAGTTTTTGAGCGGAATTTAATGTATGAAT
1 TATATATACACATATGGTTCAAATATAGATTACAAAGTTCTTGAGCGGAATTTAATGTATGAAT
* * * * ** * *
36162601 TTTACATACATATGTGGTTTGAATATAGGTTACAAA-TTCTTTGAGCTGAAATTTAATG
1 TATATATACACATATGGTTCAAATATAGATTACAAAGTTC-TTGAGC-GGAATTTAATG
36162659 CTGTAAATTA
Statistics
Matches: 104, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
63 9 0.09
64 68 0.65
65 27 0.26
ACGTcount: A:0.34, C:0.07, G:0.17, T:0.41
Consensus pattern (64 bp):
TATATATACACATATGGTTCAAATATAGATTACAAAGTTCTTGAGCGGAATTTAATGTATGAAT
Found at i:36162592 original size:64 final size:64
Alignment explanation
Indices: 36162506--36162658 Score: 209
Period size: 64 Copynumber: 2.4 Consensus size: 64
36162496 ATATATATTT
* * * *
36162506 AAAGTTCTTGAGCTGTATTTAATGTATGAATTATATATACATATGTGGTTCAAATATAGGTTAC
1 AAAGTTTTTGAGCGGAATTTAATGTATGAATTATACATACATATGTGGTTCAAATATAGGTTAC
* **
36162570 AAAGTTTTTGAGCGGAATTTAATGTATGAATTTTACATACATATGTGGTTTGAATATAGGTTAC
1 AAAGTTTTTGAGCGGAATTTAATGTATGAATTATACATACATATGTGGTTCAAATATAGGTTAC
*
36162634 AAA-TTCTTTGAGCTGAAATTTAATG
1 AAAGTT-TTTGAGC-GGAATTTAATG
36162659 CTGTAAATTA
Statistics
Matches: 79, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
63 2 0.03
64 67 0.85
65 10 0.13
ACGTcount: A:0.34, C:0.07, G:0.18, T:0.41
Consensus pattern (64 bp):
AAAGTTTTTGAGCGGAATTTAATGTATGAATTATACATACATATGTGGTTCAAATATAGGTTAC
Found at i:36162873 original size:41 final size:41
Alignment explanation
Indices: 36162816--36162904 Score: 169
Period size: 41 Copynumber: 2.2 Consensus size: 41
36162806 AGCTTAATGC
36162816 CTAGCAGACTTGATGTCGGTGAATTACTTCAGACTTTATGT
1 CTAGCAGACTTGATGTCGGTGAATTACTTCAGACTTTATGT
*
36162857 CTAGCAGACTTGATGTCGGTGAATTTCTTCAGACTTTATGT
1 CTAGCAGACTTGATGTCGGTGAATTACTTCAGACTTTATGT
36162898 CTAGCAG
1 CTAGCAG
36162905 GCTTTGTGCC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 47 1.00
ACGTcount: A:0.24, C:0.18, G:0.22, T:0.36
Consensus pattern (41 bp):
CTAGCAGACTTGATGTCGGTGAATTACTTCAGACTTTATGT
Found at i:36162918 original size:41 final size:41
Alignment explanation
Indices: 36162816--36162920 Score: 158
Period size: 41 Copynumber: 2.6 Consensus size: 41
36162806 AGCTTAATGC
*
36162816 CTAGCAGACTTGATGTCGGTGAATTACTTCAGACTTTATGT
1 CTAGCAGACTTGATGCCGGTGAATTACTTCAGACTTTATGT
* *
36162857 CTAGCAGACTTGATGTCGGTGAATTTCTTCAGACTTTATGT
1 CTAGCAGACTTGATGCCGGTGAATTACTTCAGACTTTATGT
*
36162898 CTAGCAGGCTTTG-TGCCGGTGAA
1 CTAGCAGAC-TTGATGCCGGTGAA
36162921 ATGTATCGGG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
41 57 0.95
42 3 0.05
ACGTcount: A:0.22, C:0.18, G:0.25, T:0.35
Consensus pattern (41 bp):
CTAGCAGACTTGATGCCGGTGAATTACTTCAGACTTTATGT
Found at i:36166200 original size:25 final size:25
Alignment explanation
Indices: 36166166--36166226 Score: 113
Period size: 25 Copynumber: 2.4 Consensus size: 25
36166156 AAATCACATA
*
36166166 AACGGGAAGCTCACATGAGCCATGT
1 AACGGGAAGCTCACATAAGCCATGT
36166191 AACGGGAAGCTCACATAAGCCATGT
1 AACGGGAAGCTCACATAAGCCATGT
36166216 AACGGGAAGCT
1 AACGGGAAGCT
36166227 TATTTGGGTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.34, C:0.23, G:0.28, T:0.15
Consensus pattern (25 bp):
AACGGGAAGCTCACATAAGCCATGT
Found at i:36169817 original size:15 final size:15
Alignment explanation
Indices: 36169797--36169835 Score: 78
Period size: 15 Copynumber: 2.6 Consensus size: 15
36169787 CAAAGTGCTT
36169797 ACCCTGTTTCTTTTC
1 ACCCTGTTTCTTTTC
36169812 ACCCTGTTTCTTTTC
1 ACCCTGTTTCTTTTC
36169827 ACCCTGTTT
1 ACCCTGTTT
36169836 TGTAGTGTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.08, C:0.33, G:0.08, T:0.51
Consensus pattern (15 bp):
ACCCTGTTTCTTTTC
Found at i:36171483 original size:15 final size:15
Alignment explanation
Indices: 36171463--36171496 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
36171453 TATCATTTTC
36171463 ATGTTAATTATTAAT
1 ATGTTAATTATTAAT
*
36171478 ATGTTAATTATTATT
1 ATGTTAATTATTAAT
36171493 ATGT
1 ATGT
36171497 AGTGGGTCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (15 bp):
ATGTTAATTATTAAT
Found at i:36172050 original size:108 final size:109
Alignment explanation
Indices: 36171860--36172076 Score: 418
Period size: 108 Copynumber: 2.0 Consensus size: 109
36171850 AGAAATGTAA
36171860 TACCCCGAAAATTTTTACAGTAAGATATTATCTTTGATATAGTAAGGAAATAAATTGACAAAAAG
1 TACCCCGAAAATTTTTACAGTAAGATATTATCTTTGATATAGTAAGGAAATAAATTGACAAAAAG
36171925 GGGAATTTTGAGTTATGACAACATTGGGAAGTATATTATGACAT
66 GGGAATTTTGAGTTATGACAACATTGGGAAGTATATTATGACAT
36171969 TACCCCGAAAA-TTTTACAGTAAGATATTATCTTTGATATAGTAAGGAAATAAATTGACAAAAAG
1 TACCCCGAAAATTTTTACAGTAAGATATTATCTTTGATATAGTAAGGAAATAAATTGACAAAAAG
*
36172033 GGGAATTTTGAGTTATGACAACATTGGGAAGTTTATTATGACAT
66 GGGAATTTTGAGTTATGACAACATTGGGAAGTATATTATGACAT
36172077 ATTAATTAAA
Statistics
Matches: 107, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
108 96 0.90
109 11 0.10
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.32
Consensus pattern (109 bp):
TACCCCGAAAATTTTTACAGTAAGATATTATCTTTGATATAGTAAGGAAATAAATTGACAAAAAG
GGGAATTTTGAGTTATGACAACATTGGGAAGTATATTATGACAT
Found at i:36176101 original size:51 final size:51
Alignment explanation
Indices: 36176025--36176287 Score: 423
Period size: 51 Copynumber: 5.3 Consensus size: 51
36176015 ACTTCTGGTC
36176025 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
36176076 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
*
36176127 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCT--T-A-T--C-
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
36176171 AGTGACAAGTGATGAGTGGTAGCTTTAGCTACATTTATCTGATCAGTGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* * *
36176222 AATGACAAGTGATGAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
36176273 AGTGACAAGTGATAA
1 AGTGACAAGTGATAA
36176288 ATGTGATCCG
Statistics
Matches: 196, Mismatches: 9, Indels: 14
0.89 0.04 0.06
Matches are distributed among these distances:
44 37 0.19
45 1 0.01
46 1 0.01
47 2 0.01
48 2 0.01
49 1 0.01
50 1 0.01
51 151 0.77
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.30
Consensus pattern (51 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:36176189 original size:95 final size:95
Alignment explanation
Indices: 36176025--36176283 Score: 383
Period size: 95 Copynumber: 2.7 Consensus size: 95
36176015 ACTTCTGGTC
36176025 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCT--T-A-T--C-AGTGACAAGTGATA
36176090 AGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
59 AGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACA
* *
36176127 AGTGACAAGTGATAAGTGATAGCTTTAGCTACACTTATCTTATCAGTGACAAGTGATGAGTGGTA
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTTATCAGTGACAAGTGATAAGTGGTA
*
36176192 GCTTTAGCTACATTTATCTGATCAGTGACA
66 GCTTTAGCTACACTTATCTGATCAGTGACA
* * * * *
36176222 AATGACAAGTGATGAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACAAGTGACAAGTG
1 AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTTATCAGTGACAAGTGATAAGTG
36176284 ATAAATGTGA
Statistics
Matches: 147, Mismatches: 10, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
95 104 0.71
96 1 0.01
98 1 0.01
99 1 0.01
100 1 0.01
102 39 0.27
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (95 bp):
AGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTTATCAGTGACAAGTGATAAGTGGTA
GCTTTAGCTACACTTATCTGATCAGTGACA
Found at i:36176287 original size:146 final size:146
Alignment explanation
Indices: 36176023--36176287 Score: 485
Period size: 146 Copynumber: 1.8 Consensus size: 146
36176013 GTACTTCTGG
*
36176023 TCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGA
1 TCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAATGACAAGTGA
*
36176088 TAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAGTGACAAGTGATAAGTGATAGCTTT
66 TAAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACAAGTGACAAGTGATAAGTGATAGCTTT
36176153 AGCTACACTTATCTTA
131 AGCTACACTTATCTTA
* *
36176169 TCAGTGACAAGTGATGAGTGGTAGCTTTAGCTACATTTATCTGATCAGTGACAAATGACAAGTGA
1 TCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAATGACAAGTGA
*
36176234 TGAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACAAGTGACAAGTGATAA
66 TAAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACAAGTGACAAGTGATAA
36176288 ATGTGATCCG
Statistics
Matches: 114, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
146 114 1.00
ACGTcount: A:0.32, C:0.15, G:0.23, T:0.30
Consensus pattern (146 bp):
TCAGTGACAAGTGATAAGTGGTAGCTTTAGCTACACTTATCTGATCAGTGACAAATGACAAGTGA
TAAGTGGTAGCTTTAGCTACACTTATCTGATCAGGGACAAGTGACAAGTGATAAGTGATAGCTTT
AGCTACACTTATCTTA
Found at i:36186523 original size:3 final size:3
Alignment explanation
Indices: 36186515--36186560 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
36186505 TCAGTTAAGC
* * *
36186515 TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA TAG TAA TAG TAA T
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA T
36186561 TGAATTGGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:36189163 original size:12 final size:12
Alignment explanation
Indices: 36189142--36189173 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
36189132 ATTAATTCGG
*
36189142 TTAACTGATCGA
1 TTAACCGATCGA
36189154 TTAACCGATCGA
1 TTAACCGATCGA
36189166 TTAACCGA
1 TTAACCGA
36189174 ATTCAGCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (12 bp):
TTAACCGATCGA
Found at i:36192342 original size:34 final size:34
Alignment explanation
Indices: 36192303--36192370 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
36192293 TGGCAGGATC
36192303 ATAATGCGAGAAAACTACTTATATTAGTAGTTAA
1 ATAATGCGAGAAAACTACTTATATTAGTAGTTAA
36192337 ATAATGCGAGAAAACTACTTATATTAGTAGTTAA
1 ATAATGCGAGAAAACTACTTATATTAGTAGTTAA
36192371 TTTAAATAGT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.44, C:0.09, G:0.15, T:0.32
Consensus pattern (34 bp):
ATAATGCGAGAAAACTACTTATATTAGTAGTTAA
Found at i:36205109 original size:30 final size:32
Alignment explanation
Indices: 36205073--36205144 Score: 78
Period size: 30 Copynumber: 2.3 Consensus size: 32
36205063 GGTGCAATTG
36205073 TATAAATATAAATTTAATTTTGATTT-AA-TA
1 TATAAATATAAATTTAATTTTGATTTCAACTA
* * *
36205103 TATAAATGA-AATTTTGATTTTGGTTTCAACTA
1 TATAAAT-ATAAATTTAATTTTGATTTCAACTA
*
36205135 TACAAATATA
1 TATAAATATA
36205145 CTTACAAAGC
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
30 21 0.62
31 4 0.12
32 9 0.26
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.46
Consensus pattern (32 bp):
TATAAATATAAATTTAATTTTGATTTCAACTA
Found at i:36206316 original size:54 final size:54
Alignment explanation
Indices: 36206234--36206342 Score: 218
Period size: 54 Copynumber: 2.0 Consensus size: 54
36206224 CAAACCAATG
36206234 CCCTTGAGAGATGCTTAGGTTTACCAACCATAGTAGAAAGGAACACAAGAAGAA
1 CCCTTGAGAGATGCTTAGGTTTACCAACCATAGTAGAAAGGAACACAAGAAGAA
36206288 CCCTTGAGAGATGCTTAGGTTTACCAACCATAGTAGAAAGGAACACAAGAAGAA
1 CCCTTGAGAGATGCTTAGGTTTACCAACCATAGTAGAAAGGAACACAAGAAGAA
36206342 C
1 C
36206343 TTTTCATATA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 55 1.00
ACGTcount: A:0.40, C:0.19, G:0.22, T:0.18
Consensus pattern (54 bp):
CCCTTGAGAGATGCTTAGGTTTACCAACCATAGTAGAAAGGAACACAAGAAGAA
Found at i:36208890 original size:12 final size:12
Alignment explanation
Indices: 36208873--36208915 Score: 54
Period size: 12 Copynumber: 3.6 Consensus size: 12
36208863 TTAATTTAAT
36208873 TTTAATTATTTC
1 TTTAATTATTTC
36208885 TTTAATT-TTAAT-
1 TTTAATTATT--TC
36208897 TTTAATTATTTC
1 TTTAATTATTTC
36208909 TTTAATT
1 TTTAATT
36208916 TTAATTAATT
Statistics
Matches: 27, Mismatches: 0, Indels: 8
0.77 0.00 0.23
Matches are distributed among these distances:
11 3 0.11
12 21 0.78
13 3 0.11
ACGTcount: A:0.28, C:0.05, G:0.00, T:0.67
Consensus pattern (12 bp):
TTTAATTATTTC
Found at i:36208897 original size:24 final size:24
Alignment explanation
Indices: 36208863--36208921 Score: 111
Period size: 24 Copynumber: 2.5 Consensus size: 24
36208853 CGATGACTAA
36208863 TTAA-TTTAATTTTAATTATTTCT
1 TTAATTTTAATTTTAATTATTTCT
36208886 TTAATTTTAATTTTAATTATTTCT
1 TTAATTTTAATTTTAATTATTTCT
36208910 TTAATTTTAATT
1 TTAATTTTAATT
36208922 AATTTAATTT
Statistics
Matches: 35, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
23 4 0.11
24 31 0.89
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (24 bp):
TTAATTTTAATTTTAATTATTTCT
Found at i:36214937 original size:23 final size:23
Alignment explanation
Indices: 36214910--36214956 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
36214900 TTGTCATGAG
36214910 ATGAACATGATGTTATTGTCCAA
1 ATGAACATGATGTTATTGTCCAA
36214933 ATGAACATGATGTTATTGTCCAA
1 ATGAACATGATGTTATTGTCCAA
36214956 A
1 A
36214957 AAGGGGTACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (23 bp):
ATGAACATGATGTTATTGTCCAA
Found at i:36215367 original size:48 final size:48
Alignment explanation
Indices: 36215296--36215576 Score: 418
Period size: 48 Copynumber: 5.9 Consensus size: 48
36215286 CACTGGAGGT
* * * * * * *
36215296 GGCTTCACAACGGGAGGACTTGGGTATACAGGAGGCGTTGGTGTTGGC
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
* * * *
36215344 GGCTTCACAATGGGAGGACTTGGGTATACAGGAGGCTTTGGAACTGGC
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
*
36215392 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAACTGGC
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
36215440 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
* *
36215488 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTTGCGCTGGC
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
* *
36215536 GGCTTTACAATAGGAGGACTGGGGTAGACGGGAGGCTTTGG
1 GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGG
36215577 TGGTGGTGAA
Statistics
Matches: 219, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 219 1.00
ACGTcount: A:0.20, C:0.16, G:0.43, T:0.21
Consensus pattern (48 bp):
GGCTTCACAATGGGAGGACTGGGGTAGACGGGAGGCTTTGGAGCTGGC
Found at i:36223747 original size:91 final size:92
Alignment explanation
Indices: 36223623--36223805 Score: 350
Period size: 91 Copynumber: 2.0 Consensus size: 92
36223613 CAATTTAACT
36223623 CTAGTTTTATATAAAAGTTATAAAAAAATCTCAAAATTATTTTTAAAATAAAAAAATCTATATAA
1 CTAGTTTTATATAAAAGTTATAAAAAAATCTCAAAATTATTTTTAAAATAAAAAAATCTATATAA
*
36223688 AAATTCTTAAAAAAGAAAATCTTGAAA
66 AAATTCTAAAAAAAGAAAATCTTGAAA
36223715 CTAGTTTTATAT-AAAGTTATAAAAAAATCTCAAAATTATTTTTAAAATAAAAAAATCTATATAA
1 CTAGTTTTATATAAAAGTTATAAAAAAATCTCAAAATTATTTTTAAAATAAAAAAATCTATATAA
36223779 AAATTCTAAAAAAAGAAAATCTTGAAA
66 AAATTCTAAAAAAAGAAAATCTTGAAA
36223806 ATGTTGTTGA
Statistics
Matches: 90, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
91 78 0.87
92 12 0.13
ACGTcount: A:0.56, C:0.07, G:0.04, T:0.33
Consensus pattern (92 bp):
CTAGTTTTATATAAAAGTTATAAAAAAATCTCAAAATTATTTTTAAAATAAAAAAATCTATATAA
AAATTCTAAAAAAAGAAAATCTTGAAA
Found at i:36223765 original size:28 final size:28
Alignment explanation
Indices: 36223642--36223772 Score: 104
Period size: 28 Copynumber: 4.4 Consensus size: 28
36223632 TATAAAAGTT
36223642 ATAAAAAAATCTCAAAATTATTTTTAAA
1 ATAAAAAAATCTCAAAATTATTTTTAAA
** *
36223670 ATAAAAAAATCT-ATATAAAAATTCTTAAA
1 ATAAAAAAATCTCA-A-AATTATTTTTAAA
* ** *
36223699 A-AAGAAAATCTTGAAACTAGTTTTATATAAA
1 ATAAAAAAATCTCAAAATTA--TTT-T-TAAA
36223730 GTTATAAAAAAATCTCAAAATTATTTTTAAA
1 ---ATAAAAAAATCTCAAAATTATTTTTAAA
36223761 ATAAAAAAATCT
1 ATAAAAAAATCT
36223773 ATATAAAAAT
Statistics
Matches: 80, Mismatches: 12, Indels: 22
0.70 0.11 0.19
Matches are distributed among these distances:
27 4 0.05
28 35 0.44
29 13 0.16
30 1 0.01
31 8 0.10
32 1 0.01
33 3 0.04
34 1 0.01
35 14 0.17
ACGTcount: A:0.56, C:0.07, G:0.03, T:0.34
Consensus pattern (28 bp):
ATAAAAAAATCTCAAAATTATTTTTAAA
Found at i:36225266 original size:50 final size:51
Alignment explanation
Indices: 36225207--36225305 Score: 173
Period size: 50 Copynumber: 2.0 Consensus size: 51
36225197 CCAATGCTCT
36225207 AGGGAAACTATTTAATGATTTACACCCAATGCT-AAAGTGCTACGTTCTCA
1 AGGGAAACTATTTAATGATTTACACCCAATGCTAAAAGTGCTACGTTCTCA
* *
36225257 AGGGAAACTATTTGATGATTTACACCCAATGTTAAAAGTGCTACGTTCT
1 AGGGAAACTATTTAATGATTTACACCCAATGCTAAAAGTGCTACGTTCT
36225306 AAGTGCTAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
50 31 0.67
51 15 0.33
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.31
Consensus pattern (51 bp):
AGGGAAACTATTTAATGATTTACACCCAATGCTAAAAGTGCTACGTTCTCA
Found at i:36227277 original size:13 final size:13
Alignment explanation
Indices: 36227255--36227290 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
36227245 TTCTTTATTA
36227255 CTTTTGAGAAGTG
1 CTTTTGAGAAGTG
*
36227268 CTTTTCAGAAGTG
1 CTTTTGAGAAGTG
36227281 CTTTTGAGAA
1 CTTTTGAGAA
36227291 ATTTGAGTGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.25, C:0.11, G:0.25, T:0.39
Consensus pattern (13 bp):
CTTTTGAGAAGTG
Found at i:36229324 original size:21 final size:20
Alignment explanation
Indices: 36229298--36229339 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 20
36229288 ATCACGCTTC
*
36229298 AGCACAAGATAAGAAAAAAGA
1 AGCACAAAATAA-AAAAAAGA
*
36229319 AGCACAAAATAAAAATAAGA
1 AGCACAAAATAAAAAAAAGA
36229339 A
1 A
36229340 AACACACGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.69, C:0.10, G:0.14, T:0.07
Consensus pattern (20 bp):
AGCACAAAATAAAAAAAAGA
Found at i:36233241 original size:15 final size:15
Alignment explanation
Indices: 36233197--36233242 Score: 51
Period size: 13 Copynumber: 3.1 Consensus size: 15
36233187 ACAATTAGGT
36233197 TAAAATATTTTAAAAA
1 TAAAAT-TTTTAAAAA
* *
36233213 TAAAA--ATTATAAA
1 TAAAATTTTTAAAAA
36233226 TAAAATTTTTAAAAA
1 TAAAATTTTTAAAAA
36233241 TA
1 TA
36233243 TGTATATGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 5
0.73 0.12 0.15
Matches are distributed among these distances:
13 11 0.46
15 8 0.33
16 5 0.21
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (15 bp):
TAAAATTTTTAAAAA
Found at i:36238408 original size:3 final size:3
Alignment explanation
Indices: 36238400--36238452 Score: 90
Period size: 3 Copynumber: 18.0 Consensus size: 3
36238390 ATTATTCGTC
*
36238400 TAT TAT TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TA- TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
36238447 TAT TAT
1 TAT TAT
36238453 GATGGTAACT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
2 2 0.04
3 45 0.96
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:36242904 original size:5 final size:5
Alignment explanation
Indices: 36242894--36242923 Score: 51
Period size: 5 Copynumber: 5.8 Consensus size: 5
36242884 ATTAAAAAAT
36242894 GGGCC GGGCC GGGCC GGGCC GGGCTC GGGC
1 GGGCC GGGCC GGGCC GGGCC GGGC-C GGGC
36242924 TTATGATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 19 0.79
6 5 0.21
ACGTcount: A:0.00, C:0.37, G:0.60, T:0.03
Consensus pattern (5 bp):
GGGCC
Found at i:36262395 original size:6 final size:7
Alignment explanation
Indices: 36262365--36262389 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
36262355 CCGAAAACCC
36262365 AAAAATT
1 AAAAATT
36262372 AAAAATT
1 AAAAATT
36262379 AAAAATT
1 AAAAATT
36262386 AAAA
1 AAAA
36262390 TAAAAAGTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (7 bp):
AAAAATT
Found at i:36263178 original size:42 final size:41
Alignment explanation
Indices: 36263102--36263247 Score: 202
Period size: 41 Copynumber: 3.5 Consensus size: 41
36263092 GGTGCTAACG
* *
36263102 GAAAAACGCCGCAATAGGTAAAGCAGTAGCAGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTCAAGCAGTAGCAGCGTTTATGA
*
36263143 GAAAAACGCCGCAAAAAGGTCAAGCAGTAGTAGCGTTTATGA
1 GAAAAACGCCGC-AAAAGGTCAAGCAGTAGCAGCGTTTATGA
* * * *
36263185 GAAAAACGCCACCAAAGGTTAAGCAGTAGCGGCGTTTATGA
1 GAAAAACGCCGCAAAAGGTCAAGCAGTAGCAGCGTTTATGA
* *
36263226 GAAAAACGCTGCAAAAAGTCAA
1 GAAAAACGCCGCAAAAGGTCAA
36263248 ACAAAAAATC
Statistics
Matches: 91, Mismatches: 13, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
41 54 0.59
42 37 0.41
ACGTcount: A:0.41, C:0.18, G:0.25, T:0.16
Consensus pattern (41 bp):
GAAAAACGCCGCAAAAGGTCAAGCAGTAGCAGCGTTTATGA
Found at i:36263550 original size:13 final size:13
Alignment explanation
Indices: 36263513--36263551 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
36263503 TGAAAAAAAA
* *
36263513 TTAAAATACTTAT
1 TTAAAATATTTTT
36263526 TTAAAATATTTTT
1 TTAAAATATTTTT
36263539 TTAAAAT-TTTTT
1 TTAAAATATTTTT
36263551 T
1 T
36263552 GGTATATGAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
12 6 0.25
13 18 0.75
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (13 bp):
TTAAAATATTTTT
Found at i:36264291 original size:11 final size:11
Alignment explanation
Indices: 36264269--36264299 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
36264259 TCATGGATTA
36264269 TCTCTGTTTATT
1 TCTCT-TTTATT
36264281 TCTCTTTTATT
1 TCTCTTTTATT
36264292 TCTCTTTT
1 TCTCTTTT
36264300 TCCACCCCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 14 0.74
12 5 0.26
ACGTcount: A:0.06, C:0.19, G:0.03, T:0.71
Consensus pattern (11 bp):
TCTCTTTTATT
Found at i:36272392 original size:132 final size:132
Alignment explanation
Indices: 36272229--36272507 Score: 558
Period size: 132 Copynumber: 2.1 Consensus size: 132
36272219 ACCAATTCGC
36272229 ATTTTATGTTGATGTGAACTTGATGAGAATAGTTTATTAAATAAAAATAAATAAAATTTTAAAAT
1 ATTTTATGTTGATGTGAACTTGATGAGAATAGTTTATTAAATAAAAATAAATAAAATTTTAAAAT
36272294 TTCTTGAGAGTGCTTATATACATGATATTTTTAACTACTCTTTTGAAATTTTTGATTACTTTTTT
66 TTCTTGAGAGTGCTTATATACATGATATTTTTAACTACTCTTTTGAAATTTTTGATTACTTTTTT
36272359 AG
131 AG
36272361 ATTTTATGTTGATGTGAACTTGATGAGAATAGTTTATTAAATAAAAATAAATAAAATTTTAAAAT
1 ATTTTATGTTGATGTGAACTTGATGAGAATAGTTTATTAAATAAAAATAAATAAAATTTTAAAAT
36272426 TTCTTGAGAGTGCTTATATACATGATATTTTTAACTACTCTTTTGAAATTTTTGATTACTTTTTT
66 TTCTTGAGAGTGCTTATATACATGATATTTTTAACTACTCTTTTGAAATTTTTGATTACTTTTTT
36272491 AG
131 AG
36272493 ATTTTATGTTGATGT
1 ATTTTATGTTGATGT
36272508 TAAAGTGTAT
Statistics
Matches: 147, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
132 147 1.00
ACGTcount: A:0.35, C:0.06, G:0.13, T:0.47
Consensus pattern (132 bp):
ATTTTATGTTGATGTGAACTTGATGAGAATAGTTTATTAAATAAAAATAAATAAAATTTTAAAAT
TTCTTGAGAGTGCTTATATACATGATATTTTTAACTACTCTTTTGAAATTTTTGATTACTTTTTT
AG
Found at i:36273159 original size:17 final size:16
Alignment explanation
Indices: 36273119--36273162 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 16
36273109 TAATAGAATA
36273119 AATTTAGTGTTAATTGT
1 AATTTAGT-TTAATTGT
* *
36273136 AAATTAGTTTAATTTT
1 AATTTAGTTTAATTGT
36273152 ACATTTAGTTT
1 A-ATTTAGTTT
36273163 GTCAAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.32, C:0.02, G:0.11, T:0.55
Consensus pattern (16 bp):
AATTTAGTTTAATTGT
Found at i:36274013 original size:16 final size:16
Alignment explanation
Indices: 36273991--36274028 Score: 53
Period size: 16 Copynumber: 2.4 Consensus size: 16
36273981 TATTATAAGG
36273991 ATATTTTT-TATT-TT
1 ATATTTTTGTATTGTT
36274005 ATTATTTTTGTATTGTT
1 A-TATTTTTGTATTGTT
36274022 ATATTTT
1 ATATTTT
36274029 AACTAAAGCC
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.05
15 7 0.33
16 10 0.48
17 3 0.14
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (16 bp):
ATATTTTTGTATTGTT
Found at i:36279282 original size:13 final size:13
Alignment explanation
Indices: 36279264--36279327 Score: 110
Period size: 13 Copynumber: 4.9 Consensus size: 13
36279254 AGTTTCGCAA
36279264 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
36279277 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
36279290 TGCTTTAGAAAAG
1 TGCTTTTGAAAAG
*
36279303 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
36279316 TGCTTTTGAAAA
1 TGCTTTTGAAAA
36279328 AGTTGAGTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
13 47 1.00
ACGTcount: A:0.31, C:0.08, G:0.23, T:0.38
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:36282534 original size:16 final size:16
Alignment explanation
Indices: 36282505--36282537 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
36282495 ATTTAAGAAA
36282505 AGAAAATGATTAAATT
1 AGAAAATGATTAAATT
36282521 AGAAATATGA-TAAATT
1 AGAAA-ATGATTAAATT
36282537 A
1 A
36282538 ATTAAATACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (16 bp):
AGAAAATGATTAAATT
Found at i:36283578 original size:17 final size:16
Alignment explanation
Indices: 36283545--36283587 Score: 59
Period size: 17 Copynumber: 2.6 Consensus size: 16
36283535 TCAATAATGT
*
36283545 TATTATTTTAATGTTA
1 TATTATTTTAATATTA
*
36283561 TTTTATTTATAATATTA
1 TATTATTT-TAATATTA
36283578 TATTATTTTA
1 TATTATTTTA
36283588 GTTTATAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
16 9 0.39
17 14 0.61
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (16 bp):
TATTATTTTAATATTA
Found at i:36283604 original size:23 final size:22
Alignment explanation
Indices: 36283558--36283604 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36283548 TATTTTAATG
*
36283558 TTATTTTATTTATAATATTATA
1 TTATTTTATTTATAATAATATA
36283580 TTATTTTAGTTTATAA-AATACTA
1 TTATTTTA-TTTATAATAATA-TA
36283603 TT
1 TT
36283605 TCAAATACTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.36, C:0.02, G:0.02, T:0.60
Consensus pattern (22 bp):
TTATTTTATTTATAATAATATA
Found at i:36284359 original size:15 final size:16
Alignment explanation
Indices: 36284333--36284378 Score: 55
Period size: 14 Copynumber: 3.1 Consensus size: 16
36284323 AATTAAATTT
36284333 ATTTAAA-A-TAAAAA
1 ATTTAAATATTAAAAA
*
36284347 ATTT-AATATT-AAAT
1 ATTTAAATATTAAAAA
36284361 ATTTAAATATTAAAAA
1 ATTTAAATATTAAAAA
36284377 AT
1 AT
36284379 ATTTTTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 2 0.08
14 12 0.46
15 7 0.27
16 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTAAATATTAAAAA
Found at i:36290031 original size:167 final size:167
Alignment explanation
Indices: 36289752--36290059 Score: 517
Period size: 167 Copynumber: 1.8 Consensus size: 167
36289742 ATTTCATTAC
* *
36289752 AAATGATATCTTAAGTAAGCAACTCAATACAATGCCCTTCTTCATATCTAATCTAATCTCAACCC
1 AAATGATATCCTAAGTAAGCAACTCAATACAATGCCCTTCTTCATATCTAATCCAATCTCAACCC
* * * *
36289817 TATTGTTGATGCGGACTCCCATTATAGAAATTAATTCTTTAATATTCTCATATTTCTTAAATTGT
66 TATTGTTAATGCAGACTCCCATTATAAAAATTAATTCTTTAATATTCTCACATTTCTTAAATTGT
36289882 AAATTTCACATGCTTTATATTATCCGATGAACACTGT
131 AAATTTCACATGCTTTATATTATCCGATGAACACTGT
36289919 AAATGATATCCTAAGTAAGCAACTCAATACAATGCCCTTCTTCATATCTAATCCAATCTCAACCC
1 AAATGATATCCTAAGTAAGCAACTCAATACAATGCCCTTCTTCATATCTAATCCAATCTCAACCC
* * * * *
36289984 TATTGTTAATTCAGACTCTCATTATAAAAATTAATTCTTTCATATTCTCCCATTTCTTAACTTGT
66 TATTGTTAATGCAGACTCCCATTATAAAAATTAATTCTTTAATATTCTCACATTTCTTAAATTGT
36290049 AAATTTCACAT
131 AAATTTCACAT
36290060 TTCACATTTC
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
167 130 1.00
ACGTcount: A:0.33, C:0.21, G:0.07, T:0.38
Consensus pattern (167 bp):
AAATGATATCCTAAGTAAGCAACTCAATACAATGCCCTTCTTCATATCTAATCCAATCTCAACCC
TATTGTTAATGCAGACTCCCATTATAAAAATTAATTCTTTAATATTCTCACATTTCTTAAATTGT
AAATTTCACATGCTTTATATTATCCGATGAACACTGT
Found at i:36290063 original size:7 final size:7
Alignment explanation
Indices: 36290051--36290087 Score: 74
Period size: 7 Copynumber: 5.3 Consensus size: 7
36290041 TAACTTGTAA
36290051 ATTTCAC
1 ATTTCAC
36290058 ATTTCAC
1 ATTTCAC
36290065 ATTTCAC
1 ATTTCAC
36290072 ATTTCAC
1 ATTTCAC
36290079 ATTTCAC
1 ATTTCAC
36290086 AT
1 AT
36290088 AATTTATATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.30, C:0.27, G:0.00, T:0.43
Consensus pattern (7 bp):
ATTTCAC
Found at i:36295578 original size:42 final size:42
Alignment explanation
Indices: 36295515--36295598 Score: 114
Period size: 42 Copynumber: 2.0 Consensus size: 42
36295505 ACCTCAAGAA
* *
36295515 ATCCGGCAAGCCAGCGATCAGCATTTTCCACCAACTCATTAC
1 ATCCGGCAACCCAGCGATCAGCATTTCCCACCAACTCATTAC
* * * *
36295557 ATCCGGCAACCCAGCGGTCAGCGTTTCCCACCCACTCGTTAC
1 ATCCGGCAACCCAGCGATCAGCATTTCCCACCAACTCATTAC
36295599 GATGCATGGC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.24, C:0.39, G:0.17, T:0.20
Consensus pattern (42 bp):
ATCCGGCAACCCAGCGATCAGCATTTCCCACCAACTCATTAC
Found at i:36295827 original size:2 final size:2
Alignment explanation
Indices: 36295822--36295863 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
36295812 ATACACACGC
36295822 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36295864 ACAAACNNNN
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36301116 original size:18 final size:19
Alignment explanation
Indices: 36301095--36301133 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
36301085 GGTATTTTAC
*
36301095 TAAAATATTA-CAAAAAAA
1 TAAAATAATATCAAAAAAA
*
36301113 TAAAATAATATCAAAATAA
1 TAAAATAATATCAAAAAAA
36301132 TA
1 TA
36301134 TTAACTTTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (19 bp):
TAAAATAATATCAAAAAAA
Found at i:36301315 original size:13 final size:13
Alignment explanation
Indices: 36301297--36301321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36301287 AAAGGAGAGG
36301297 AAAGAAAGAAAAA
1 AAAGAAAGAAAAA
36301310 AAAGAAAGAAAA
1 AAAGAAAGAAAA
36301322 GGAAAGGAGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.84, C:0.00, G:0.16, T:0.00
Consensus pattern (13 bp):
AAAGAAAGAAAAA
Found at i:36302232 original size:149 final size:150
Alignment explanation
Indices: 36301675--36303046 Score: 1487
Period size: 149 Copynumber: 8.9 Consensus size: 150
36301665 AAAATTATAC
* * * * *
36301675 ATTTAAAAAACACACTA-AATTAATAAATTTCAAACATAATGTGCTAAAATAATGTAAAATAATA
1 ATTTAAAAAAAATACAATAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
**
36301739 AAATTAGAAAAT-ATGATATTTTTT-AAAGTAATAAAATGAGGAGAAAAAAATACGAACAAAGGG
66 AAATTAGAAAATAAT-ATATTTTTTAAAAGTAATAAAATTCGG-G-AAAAAATACGAACAAAGGG
*
36301802 CCGAAGTAAGGGTTTTTTAACTAA
128 CCGAAATAAGGGTTTTTT-ACTAA
* * * *
36301826 TTTTTTTTAAAAAAAAGA-AATAATTAATACATTTC-AACATAATGTTCTAAAATAATGTAAAAA
1 ----ATTTAAAAAAAATACAATAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
* * **
36301889 AATAAAA-TATGAAAATAATATATTTTTATTGAAAGTAATAAAAATCGGGAAAAAAATACGAGTA
62 AATAAAATTA-GAAAATAATATA-TTTT-TTAAAAGTAATAAAATTCGGG-AAAAAATACGAACA
*
36301953 AAGGGCCAAAATAAGGGTTTTTT--TAA
123 AAGGGCCGAAATAAGGGTTTTTTACTAA
** * * * * *
36301979 ATTATTTAAAAAATACGATAAATTTATTTAAATTTCAAACATAATGTACTAAAATGATGTAAAAA
1 ATT-TAAAAAAAATACAAT-AA-TTA-ATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
* * *
36302044 AATTAAAATTAGAAAATAGTATATTTTTTTAAAGTAATAAAATTCGGGAAAAAATACGAACAAAA
62 AA-TAAAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAG
**
36302109 GGCTAAAATAAGGGTTTTTTACTAA
126 GGCCGAAATAAGGGTTTTTTACTAA
*
36302134 ATTTAAAAAAAATA-AATAATTAATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATA
1 ATTTAAAAAAAATACAATAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* * * * *
36302198 AAATTAGAAAATACTATATTTTTTAAAAGTAATAAAATTCGGAAAAAAAAAGGAACAAAGAGCCG
66 AAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCG
36302263 AAATAAGGGTTTTTTACTAA
131 AAATAAGGGTTTTTTACTAA
*
36302283 ATTTAAAAAAAATA-AATAATTAATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATA
1 ATTTAAAAAAAATACAATAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
* * * * *
36302347 AAATTAGAAAATACTATATTTTTTAAAAGTAATAAAATTCGGAAAAAAAAAGGAACAAAGAGCCG
66 AAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCG
36302412 AAATAAGGGTTTTTTACTAA
131 AAATAAGGGTTTTTTACTAA
* * * *
36302432 A-TTAAAAAAAACAGAATTAATTAATACATTTCAAACATAATGTACTAAAATAAAGTATAATAAT
1 ATTTAAAAAAAATACAA-TAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAAT
* * *
36302496 AAAA-TATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCTGGAAAAAAATACGAGCAAAG
65 AAAATTA-GAAAATAATATA-TTTT-TTAAAAGTAATAAAATTC-GGGAAAAAATACGAACAAAG
*
36302560 GGCCGAAATAAGAGTTTTTT--TAAA
126 GGCCGAAATAAGGGTTTTTTACT-AA
* * * * *
36302584 ATTTAATTAAAAAACACACTAAATTTATTTAAATTTCAATCATAATGTACTAAAATAATGTAAAA
1 ATTTAA--AAAAAATACAAT-AA-TTA-ATACATTTCAAACATAATGTACTAAAATAATGTAAAA
* *
36302649 TAATAAAATTAGAAAATAGTCTATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAG
61 TAATAAAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAG
*
36302714 GGCCGAAATAAAGGTTTTTTACATAA
126 GGCCGAAATAAGGGTTTTTTAC-TAA
* * * *
36302740 TTTTCTAAAAAAATAGAATTAATTAATACATTTCAAACATAATGTACTAAAATAAAATAAAATAA
1 ATTT-AAAAAAAATACAA-TAATTAATACATTTCAAACATAATGTACTAAAAT--AAT---GTAA
* * *
36302805 AATAAAATAATAAAATACGAAAATAATAAATTTTTATTGAAAGTAATAAAATTCGGGAAAAAAAT
59 AAT--AAT-A-AAATTA-GAAAATAATATA-TTTT-TTAAAAGTAATAAAATTCGGG-AAAAAAT
* * **
36302870 ACGAGCAAAGGGCCGAAATAAGAGTTTTTTTTTAA
116 ACGAACAAAGGGCCGAAATAAGGGTTTTTTACTAA
** * * * * *
36302905 ATTTATTTAAAAACACACTAAATCTATTTAAATTTCAAACATAATGTACTAAAATAATTTAAAAT
1 ATTTA-AAAAAAATACAAT-AAT-TA-ATACATTTCAAACATAATGTACTAAAATAATGTAAAAT
* * * * *
36302970 AATAAAATTAGAAAATAGTCTATTTTTT-AAAGTAATAAAACTCGAGAAAAAATACGAACAAATG
62 AATAAAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGG
36303034 GCCGAAATAAGGG
127 GCCGAAATAAGGG
36303047 ATACACACAT
Statistics
Matches: 1055, Mismatches: 110, Indels: 106
0.83 0.09 0.08
Matches are distributed among these distances:
148 11 0.01
149 234 0.22
150 102 0.10
151 10 0.01
152 24 0.02
153 135 0.13
154 134 0.13
155 111 0.11
156 70 0.07
157 77 0.07
158 13 0.01
159 1 0.00
160 6 0.01
161 1 0.00
162 11 0.01
163 9 0.01
164 5 0.00
165 39 0.04
166 36 0.03
167 26 0.02
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (150 bp):
ATTTAAAAAAAATACAATAATTAATACATTTCAAACATAATGTACTAAAATAATGTAAAATAATA
AAATTAGAAAATAATATATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCG
AAATAAGGGTTTTTTACTAA
Found at i:36302821 original size:5 final size:5
Alignment explanation
Indices: 36302787--36302814 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
36302777 CATAATGTAC
36302787 TAAAA TAAAA TAAAA TAAAA TAAAA TAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAA
36302815 TAAAATACGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:36302900 original size:320 final size:307
Alignment explanation
Indices: 36301677--36303046 Score: 1787
Period size: 320 Copynumber: 4.4 Consensus size: 307
36301667 AATTATACAT
* *
36301677 TTAAAAAACACACTAAA-TTA-ATAAATTTCAAACATAATGTGCTAAAATAATGTAAAATAATAA
1 TTAAAAAACACACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
**
36301740 AATTAGAAAATA-TGATATTTTTTAAAGTAATAAAATGAGGAGAAAAAAATACGAACAAAGGGCC
66 AATTAGAAAATAGT-ATATTTTTTAAAGTAATAAAATTCGG-G-AAAAAATACGAACAAAGGGCC
* * *
36301804 GAAGTAAGGGTTTTTTAACTAATTTTTTTTAAAAAAA-AGAAATAATTAATACATTTC-AACATA
128 GAAATAAGGGTTTTTT-ACTAA---TTTTAAAAAAAATAGAATTAATTAATACATTTCAAACATA
* * *
36301867 ATGTTCTAAAATAATGTAAAAAAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAA
189 ATGTACTAAAATAATGTATAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAA
* * * * *
36301932 ATCGGGAAAAAAATACGAGTAAAGGGCCAAAATAAGGGTTTTTTT-AAA-TTAT
254 TTCGGGAAAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTAAAATTTAA
* * *
36301984 TTAAAAAATACGA-TAAATTTATTTAAATTTCAAACATAATGTACTAAAATGATGTAAAAAAATT
1 TTAAAAAACAC-ACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAA-T
* *
36302048 AAAATTAGAAAATAGTATATTTTTTTAAAGTAATAAAATTCGGGAAAAAATACGAACAAAAGGCT
64 AAAATTAGAAAATAGTATA-TTTTTTAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCC
* * *
36302113 AAAATAAGGGTTTTTTACTAAATTTAAAAAAAATA-AA-TAATTAATACATTTTAAACATAATGT
128 GAAATAAGGGTTTTTTACTAATTTTAAAAAAAATAGAATTAATTAATACATTTCAAACATAATGT
* * *
36302176 ACTAAAATAATGTAAAATAATAAAAT-TAGAAAATACTATA-TTTT-TTAAAAGTAATAAAATTC
193 ACTAAAATAATGTATAATAATAAAATAT-GAAAATAATATATTTTTATTGAAAGTAATAAAATTC
* * * * *
36302238 -GGAAAAAAAAAGGAACAAAGAGCCGAAATAAG-GGTTTTTTACTAAATTTAA
257 GGGAAAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTA--AAATTTAA
* * * * *
36302289 --AAAAAATA-AAT-AA-TTA-ATACATTTTAAACATAATGTACTAAAATAATGTAAAATAATAA
1 TTAAAAAACACACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* * * * *
36302348 AATTAGAAAATACTATATTTTTTAAAAGTAATAAAATTCGGAAAAAAAAAGGAACAAAGAGCCGA
66 AATTAGAAAATAGTATATTTTTT-AAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCGA
* *
36302413 AATAAGGGTTTTTTACTAA-ATTAAAAAAAACAGAATTAATTAATACATTTCAAACATAATGTAC
130 AATAAGGGTTTTTTACTAATTTTAAAAAAAATAGAATTAATTAATACATTTCAAACATAATGTAC
* *
36302477 TAAAATAAAGTATAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCTGG
195 TAAAATAATGTATAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGG
36302542 AAAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTAAAATTTAA
260 AAAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTAAAATTTAA
*
36302590 TTAAAAAACACACTAAATTTATTTAAATTTCAATCATAATGTACTAAAATAATGTAAAATAATAA
1 TTAAAAAACACACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
*
36302655 AATTAGAAAATAGTCTATTTTTTAAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCGA
66 AATTAGAAAATAGTATATTTTTT-AAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCGA
* *
36302720 AATAAAGGTTTTTTACATAATTTTCTAAAAAAATAGAATTAATTAATACATTTCAAACATAATGT
130 AATAAGGGTTTTTTAC-TAATTTT-AAAAAAAATAGAATTAATTAATACATTTCAAACATAATGT
* * *
36302785 ACTAAAATAAAATAAAATAAAATAAAATAATAAAATACGAAAATAATAAATTTTTATTGAAAGTA
193 ACTAAAAT--AAT---GT---AT--AATAATAAAATATGAAAATAATATATTTTTATTGAAAGTA
*
36302850 ATAAAATTCGGGAAAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTTTAAATTT-A
248 ATAAAATTCGGGAAAAAAATACGAGCAAAGGGCCGAAATAAGAG-TTTTTTTAAAATTTAA
* * *
36302910 TTTAAAAACACACTAAATCTATTTAAATTTCAAACATAATGTACTAAAATAATTTAAAATAATAA
1 TTAAAAAACACACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
* * * *
36302975 AATTAGAAAATAGTCTATTTTTTAAAGTAATAAAACTCGAGAAAAAATACGAACAAATGGCCGAA
66 AATTAGAAAATAGTATATTTTTTAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCGAA
36303040 ATAAGGG
131 ATAAGGG
36303047 ATACACACAT
Statistics
Matches: 939, Mismatches: 82, Indels: 72
0.86 0.08 0.07
Matches are distributed among these distances:
297 17 0.02
298 74 0.08
299 95 0.10
300 8 0.01
301 35 0.04
302 55 0.06
303 39 0.04
304 24 0.03
305 62 0.07
306 4 0.00
307 127 0.14
308 12 0.01
309 71 0.08
310 65 0.07
311 22 0.02
312 2 0.00
315 1 0.00
318 2 0.00
319 45 0.05
320 166 0.18
321 13 0.01
ACGTcount: A:0.53, C:0.07, G:0.10, T:0.30
Consensus pattern (307 bp):
TTAAAAAACACACTAAATTTATTTAAATTTCAAACATAATGTACTAAAATAATGTAAAATAATAA
AATTAGAAAATAGTATATTTTTTAAAGTAATAAAATTCGGGAAAAAATACGAACAAAGGGCCGAA
ATAAGGGTTTTTTACTAATTTTAAAAAAAATAGAATTAATTAATACATTTCAAACATAATGTACT
AAAATAATGTATAATAATAAAATATGAAAATAATATATTTTTATTGAAAGTAATAAAATTCGGGA
AAAAAATACGAGCAAAGGGCCGAAATAAGAGTTTTTTTAAAATTTAA
Found at i:36303301 original size:139 final size:139
Alignment explanation
Indices: 36303051--36303324 Score: 476
Period size: 139 Copynumber: 2.0 Consensus size: 139
36303041 TAAGGGATAC
* *
36303051 ACACATCTTTGATGCGGCTAATAACATGGTAATATATTATTATTTGTTAATCACGAGTTCTATTA
1 ACACATATTTGATGCGGCTAATAACATGGTAATATATTATTATCTGTTAATCACGAGTTCTATTA
* *
36303116 AAAAAGGATATACGTAATATATAGAAATAAATCATGTTATCCTAATATTTTTTTCTATAATTTAA
66 AAAAAGGATATACATAATATATAGAAATAAATCATGTTATCCTAATATATTTTTCTATAATTTAA
36303181 CACTAGTAA
131 CACTAGTAA
* * *
36303190 ACACATATTTGATGCGGCTAATGAGATGGTAATATATTATTATCTGTTAATCACGGGTTCTATTA
1 ACACATATTTGATGCGGCTAATAACATGGTAATATATTATTATCTGTTAATCACGAGTTCTATTA
*
36303255 AAAAAGGATATACATAATATATAGAAATAAATCATGTTATCCTAATATATTTTTCTGTAATTTAA
66 AAAAAGGATATACATAATATATAGAAATAAATCATGTTATCCTAATATATTTTTCTATAATTTAA
36303320 CACTA
131 CACTA
36303325 TCAGGACTCG
Statistics
Matches: 127, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
139 127 1.00
ACGTcount: A:0.39, C:0.11, G:0.12, T:0.38
Consensus pattern (139 bp):
ACACATATTTGATGCGGCTAATAACATGGTAATATATTATTATCTGTTAATCACGAGTTCTATTA
AAAAAGGATATACATAATATATAGAAATAAATCATGTTATCCTAATATATTTTTCTATAATTTAA
CACTAGTAA
Found at i:36304946 original size:77 final size:77
Alignment explanation
Indices: 36304593--36304942 Score: 610
Period size: 77 Copynumber: 4.5 Consensus size: 77
36304583 CATTTTCGAT
*
36304593 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATTACTTAATTTGGATACAATTTAAGCATA
1 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAA-TT-----TA
36304658 AGCATAAGCATAAGCTGA
60 AGCATAAGCATAAGCTGA
36304676 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
1 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
36304741 AGCATAAGCTGA
66 AGCATAAGCTGA
*
36304753 ATAATTTTAATTATTTCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
1 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
36304818 AGCATAAGCTGA
66 AGCATAAGCTGA
* *
36304830 ATAATTTTAATTATTCCAAATGAATTATACTTTTTACAACTTAATTTGGATATAATTTAAGCATA
1 ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
36304895 AGCATAAGCTGA
66 AGCATAAGCTGA
36304907 ATAATTTTAATTATTCCAAATGAATTATACTTTTTA
1 ATAATTTTAATTATTCCAAATGAATTATACTTTTTA
36304943 CAACATTATT
Statistics
Matches: 262, Mismatches: 5, Indels: 6
0.96 0.02 0.02
Matches are distributed among these distances:
77 206 0.79
82 2 0.01
83 54 0.21
ACGTcount: A:0.40, C:0.10, G:0.09, T:0.41
Consensus pattern (77 bp):
ATAATTTTAATTATTCCAAATGAATTATACTTTTTATAACTTAATTTGGATACAATTTAAGCATA
AGCATAAGCTGA
Found at i:36307879 original size:39 final size:38
Alignment explanation
Indices: 36307835--36308041 Score: 111
Period size: 39 Copynumber: 5.3 Consensus size: 38
36307825 ACTAACACAA
36307835 TAACAATAATAATAATTTTATACTCAAAATAATACTAAC
1 TAACAATAATAATAATTTTATACT-AAAATAATACTAAC
** *
36307874 TAACAATAATAATTAGGGTTT-TACT-AAA-AATAATAAC
1 TAACAATAATAA-TA-ATTTTATACTAAAATAATACTAAC
** * *
36307911 TAACAATAAT-ATAATGTAAAAACTAACAATCATACTAAC
1 TAACAATAATAATAAT-TTTATACTAA-AATAATACTAAC
* **
36307950 TAA-AATAATAATTAGGGTTTT-TACTAATCCTAATAACTAACC
1 TAACAATAATAA-TA--ATTTTATACTAA-AATAAT-ACTAA-C
* * * * *
36307992 ATAATAATAATATTAGTTTTTTACTAACAATAATACTAAG
1 -TAACAATAATAATAATTTTATACTAA-AATAATACTAAC
*
36308032 TAATAATAAT
1 TAACAATAAT
36308042 TATTAATAAC
Statistics
Matches: 129, Mismatches: 23, Indels: 32
0.70 0.12 0.17
Matches are distributed among these distances:
35 3 0.02
36 4 0.03
37 19 0.15
38 11 0.09
39 33 0.26
40 16 0.12
41 19 0.15
42 12 0.09
43 5 0.04
44 7 0.05
ACGTcount: A:0.51, C:0.11, G:0.04, T:0.34
Consensus pattern (38 bp):
TAACAATAATAATAATTTTATACTAAAATAATACTAAC
Found at i:36307953 original size:23 final size:23
Alignment explanation
Indices: 36307908--36307954 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
36307898 TAAAAATAAT
*
36307908 AACTAACAATAATATAATGTAAA
1 AACTAACAATAATATAATCTAAA
*
36307931 AACTAACAATCATACTAA-CTAAA
1 AACTAACAATAATA-TAATCTAAA
36307954 A
1 A
36307955 TAATAATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 18 0.86
24 3 0.14
ACGTcount: A:0.60, C:0.15, G:0.02, T:0.23
Consensus pattern (23 bp):
AACTAACAATAATATAATCTAAA
Found at i:36308030 original size:41 final size:40
Alignment explanation
Indices: 36307862--36308046 Score: 136
Period size: 40 Copynumber: 4.7 Consensus size: 40
36307852 TTATACTCAA
* *
36307862 AATAATACTAACTAACAATAATAATTAGGG-TTTTACTAAA
1 AATAATACTAACTAATAATAAT-ATTAGGGTTTTTACTAAC
* ****
36307902 AATAATAACTAAC-AATAAT-ATA--A-TGTAAAAACTAAC
1 AATAAT-ACTAACTAATAATAATATTAGGGTTTTTACTAAC
*
36307938 AATCATACTAACTAA-AATAATAATTAGGGTTTTTACTAATC
1 AATAATACTAACTAATAATAAT-ATTAGGGTTTTTACTAA-C
* *
36307979 -CTAATAACTAACCATAATAATAATATTA-GTTTTTTACTAAC
1 AATAAT-ACTAA-C-TAATAATAATATTAGGGTTTTTACTAAC
*
36308020 AATAATACTAAGTAATAATAATTATTA
1 AATAATACTAACTAATAATAA-TATTA
36308047 ATAACTAAAT
Statistics
Matches: 112, Mismatches: 18, Indels: 30
0.70 0.11 0.19
Matches are distributed among these distances:
35 10 0.09
36 15 0.13
37 1 0.01
38 1 0.01
39 12 0.11
40 26 0.23
41 18 0.16
42 16 0.14
43 7 0.06
44 6 0.05
ACGTcount: A:0.50, C:0.11, G:0.05, T:0.34
Consensus pattern (40 bp):
AATAATACTAACTAATAATAATATTAGGGTTTTTACTAAC
Found at i:36308281 original size:3 final size:3
Alignment explanation
Indices: 36308275--36308343 Score: 58
Period size: 3 Copynumber: 24.3 Consensus size: 3
36308265 CCTCCTCATC
* * *
36308275 CTT CTT CTT C-T CATC CTT CTT CTT TTT CTT CTT -TT -TT TTT CTT
1 CTT CTT CTT CTT C-TT CTT CTT CTT CTT CTT CTT CTT CTT CTT CTT
*
36308318 CTT CTT -TT -TT CTT CTT CTT CTC CTT C
1 CTT CTT CTT CTT CTT CTT CTT CTT CTT C
36308344 AGCTGGACGG
Statistics
Matches: 55, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
2 10 0.18
3 44 0.80
4 1 0.02
ACGTcount: A:0.01, C:0.30, G:0.00, T:0.68
Consensus pattern (3 bp):
CTT
Found at i:36308287 original size:15 final size:15
Alignment explanation
Indices: 36308269--36308298 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
36308259 CATCCTCCTC
36308269 CTCATCCTTCTTCTT
1 CTCATCCTTCTTCTT
36308284 CTCATCCTTCTTCTT
1 CTCATCCTTCTTCTT
36308299 TTTCTTCTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.07, C:0.40, G:0.00, T:0.53
Consensus pattern (15 bp):
CTCATCCTTCTTCTT
Found at i:36308315 original size:13 final size:13
Alignment explanation
Indices: 36308290--36308336 Score: 78
Period size: 13 Copynumber: 3.7 Consensus size: 13
36308280 TCTTCTCATC
36308290 CTTCTTC-TTTTT
1 CTTCTTCTTTTTT
*
36308302 CTTCTTTTTTTTT
1 CTTCTTCTTTTTT
36308315 CTTCTTCTTTTTT
1 CTTCTTCTTTTTT
36308328 CTTCTTCTT
1 CTTCTTCTT
36308337 CTCCTTCAGC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
12 6 0.19
13 26 0.81
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTCTTCTTTTTT
Found at i:36308321 original size:16 final size:16
Alignment explanation
Indices: 36308294--36308338 Score: 72
Period size: 16 Copynumber: 2.8 Consensus size: 16
36308284 CTCATCCTTC
*
36308294 TTCTTTTTCTTCTTTT
1 TTCTTCTTCTTCTTTT
*
36308310 TTTTTCTTCTTCTTTT
1 TTCTTCTTCTTCTTTT
36308326 TTCTTCTTCTTCT
1 TTCTTCTTCTTCT
36308339 CCTTCAGCTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 26 1.00
ACGTcount: A:0.00, C:0.22, G:0.00, T:0.78
Consensus pattern (16 bp):
TTCTTCTTCTTCTTTT
Found at i:36308918 original size:30 final size:30
Alignment explanation
Indices: 36308883--36308950 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 30
36308873 TAGTTAGGAA
* *
36308883 TTAGTTACTTA-TGTGTAATTAGCAGTAGGG
1 TTAGTTAC-TACTGTATAATTAGCAATAGGG
*
36308913 TTAGTTA-TACTTGTATAATTGGCAATAGGG
1 TTAGTTACTAC-TGTATAATTAGCAATAGGG
36308943 TTAGTTAC
1 TTAGTTAC
36308951 ACTCTTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
28 2 0.06
30 30 0.94
ACGTcount: A:0.28, C:0.07, G:0.24, T:0.41
Consensus pattern (30 bp):
TTAGTTACTACTGTATAATTAGCAATAGGG
Found at i:36313439 original size:30 final size:30
Alignment explanation
Indices: 36313403--36313470 Score: 95
Period size: 30 Copynumber: 2.3 Consensus size: 30
36313393 TAGTTAGGAA
36313403 TTAGTTACTTAC-GTATAATTAGCAGTAGGG
1 TTAGTTAC-TACTGTATAATTAGCAGTAGGG
*
36313433 TTAGTTA-TACTTGTATAATTGGCAGTAGGG
1 TTAGTTACTAC-TGTATAATTAGCAGTAGGG
36313463 TTAGTTAC
1 TTAGTTAC
36313471 ACTCTTGTGT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
28 3 0.09
30 31 0.91
ACGTcount: A:0.28, C:0.09, G:0.24, T:0.40
Consensus pattern (30 bp):
TTAGTTACTACTGTATAATTAGCAGTAGGG
Found at i:36317438 original size:30 final size:28
Alignment explanation
Indices: 36317404--36317465 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 28
36317394 TGACGATTTT
*
36317404 TTTTTTAAATATTTAGAGAAATAAGTCGAA
1 TTTTTT-AATATTTAGAGAAATAAATCG-A
* *
36317434 TTTTTTCATATTTAGGGAAATAAATCGA
1 TTTTTTAATATTTAGAGAAATAAATCGA
36317462 TTTT
1 TTTT
36317466 GGAGAGAGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 5 0.17
29 18 0.62
30 6 0.21
ACGTcount: A:0.37, C:0.05, G:0.13, T:0.45
Consensus pattern (28 bp):
TTTTTTAATATTTAGAGAAATAAATCGA
Found at i:36317939 original size:16 final size:18
Alignment explanation
Indices: 36317906--36317943 Score: 53
Period size: 19 Copynumber: 2.2 Consensus size: 18
36317896 ATAAAATCAA
36317906 ATAATAAATATGTAATTAT
1 ATAATAAATA-GTAATTAT
36317925 ATAATAAATA-T-ATTAT
1 ATAATAAATAGTAATTAT
36317941 ATA
1 ATA
36317944 TTTCATTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
16 8 0.42
17 1 0.05
19 10 0.53
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
ATAATAAATAGTAATTAT
Found at i:36322568 original size:32 final size:31
Alignment explanation
Indices: 36322498--36322568 Score: 81
Period size: 31 Copynumber: 2.3 Consensus size: 31
36322488 TATATTTGAA
* * *
36322498 ATGTTACGTTTTGGTCACTTATGTTATTGTC
1 ATGTAACGTTTTAGTCACTGATGTTATTGTC
*
36322529 TTGTAACGTTTTAGTCACTGAGTGTTAATTGTC
1 ATGTAACGTTTTAGTCACTGA-TGTT-ATTGTC
36322562 AT-TAACG
1 ATGTAACG
36322569 GTGTAACAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
31 17 0.52
32 9 0.27
33 7 0.21
ACGTcount: A:0.21, C:0.13, G:0.20, T:0.46
Consensus pattern (31 bp):
ATGTAACGTTTTAGTCACTGATGTTATTGTC
Found at i:36328618 original size:3 final size:3
Alignment explanation
Indices: 36328586--36328660 Score: 105
Period size: 3 Copynumber: 25.0 Consensus size: 3
36328576 NNNNNNNTAG
* * * * *
36328586 TAA TAA GAA TAT TAG TAA CAA TAC TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
36328634 TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA
36328661 AACTACTGAA
Statistics
Matches: 63, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 63 1.00
ACGTcount: A:0.63, C:0.03, G:0.03, T:0.32
Consensus pattern (3 bp):
TAA
Found at i:36328716 original size:24 final size:24
Alignment explanation
Indices: 36328689--36328772 Score: 82
Period size: 24 Copynumber: 3.4 Consensus size: 24
36328679 TATCGAAATA
36328689 AAATAAAAAAACTGGGCGAATTTG
1 AAATAAAAAAACTGGGCGAATTTG
** * *
36328713 AAATAAAAAAGAC-GAAATCGAA-ATA
1 AAATAAAAAA-ACTG--GGCGAATTTG
36328738 AAATTAAAAAAACTGGGCGAATTTG
1 AAA-TAAAAAAACTGGGCGAATTTG
36328763 AAATAAAAAA
1 AAATAAAAAA
36328773 GACGAAAAGG
Statistics
Matches: 46, Mismatches: 8, Indels: 12
0.70 0.12 0.18
Matches are distributed among these distances:
24 22 0.48
25 12 0.26
26 12 0.26
ACGTcount: A:0.60, C:0.07, G:0.15, T:0.18
Consensus pattern (24 bp):
AAATAAAAAAACTGGGCGAATTTG
Found at i:36328722 original size:49 final size:50
Alignment explanation
Indices: 36328680--36328779 Score: 193
Period size: 50 Copynumber: 2.0 Consensus size: 50
36328670 AAAAAGGACT
36328680 ATCGAAATAAAA-TAAAAAAACTGGGCGAATTTGAAATAAAAAAGACGAA
1 ATCGAAATAAAATTAAAAAAACTGGGCGAATTTGAAATAAAAAAGACGAA
36328729 ATCGAAATAAAATTAAAAAAACTGGGCGAATTTGAAATAAAAAAGACGAA
1 ATCGAAATAAAATTAAAAAAACTGGGCGAATTTGAAATAAAAAAGACGAA
36328779 A
1 A
36328780 AGGACCAAAA
Statistics
Matches: 50, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
49 12 0.24
50 38 0.76
ACGTcount: A:0.59, C:0.08, G:0.16, T:0.17
Consensus pattern (50 bp):
ATCGAAATAAAATTAAAAAAACTGGGCGAATTTGAAATAAAAAAGACGAA
Found at i:36329331 original size:17 final size:16
Alignment explanation
Indices: 36329309--36329342 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
36329299 TTACGTTGTT
36329309 TAAAAATAAAACAAAAA
1 TAAAAATAAAA-AAAAA
*
36329326 TAAAAATATAAAAAAA
1 TAAAAATAAAAAAAAA
36329342 T
1 T
36329343 CGATTGCAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 6 0.38
17 10 0.62
ACGTcount: A:0.79, C:0.03, G:0.00, T:0.18
Consensus pattern (16 bp):
TAAAAATAAAAAAAAA
Found at i:36330432 original size:44 final size:43
Alignment explanation
Indices: 36330360--36330785 Score: 204
Period size: 44 Copynumber: 9.8 Consensus size: 43
36330350 ACCTGATGCG
* * * *
36330360 ATCTACTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTGTTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCC-TTGTTTCA
* * * * *
36330404 ATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACTGGCTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTTGTTTCA
* * * *
36330448 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGAT-C-TGATACG
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTGTTTCA
* * * * *
36330489 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCC-TTGTTTCA
* * * ** * * *
36330533 ATCCGCTCCACTGTAATCTCAGTGAGATAGGATTAATAGCTTAA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTTGTTTCA
* * *
36330577 ATCTGCTCCGCTATAATCTCAGGGAGATAAGAT-C-TGAAATTATTA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTG---TT-TCA
* * * * * * *
36330622 GGTCTGTTCCACTGTAATCTCAGGGAAATAGGA-CC-TGATACG
1 -ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTGTTTCA
* * * * *
36330664 ATCTTCTCTACTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTA
1 ATCTGCTCCACTGTAATC-TCAGGGAGATAAGATCC-TTGTTTCA
** * * * ***
36330708 ATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCA
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGA-TCCTTGTTTCA
* *
36330752 ATATGCTCCGCTGTAATCTCAGGGAGATAAGATC
1 ATCTGCTCCACTGTAATCTCAGGGAGATAAGATC
36330786 TGAAATTCTT
Statistics
Matches: 278, Mismatches: 84, Indels: 41
0.69 0.21 0.10
Matches are distributed among these distances:
40 2 0.01
41 54 0.19
42 4 0.01
43 4 0.01
44 175 0.63
45 10 0.04
46 29 0.10
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (43 bp):
ATCTGCTCCACTGTAATCTCAGGGAGATAAGATCCTTGTTTCA
Found at i:36330542 original size:129 final size:129
Alignment explanation
Indices: 36330312--36330613 Score: 460
Period size: 129 Copynumber: 2.3 Consensus size: 129
36330302 TAAAATTATC
* * * * * * * * *
36330312 GGCTTCAATGTACTCCACTGTAACCACAGGGAGGTAAAACCTGATGCGATCTACTCTACTGTAAC
1 GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAAC
* *
36330377 TTCAGAGAGATAAGATCCTTTGTTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTACT
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTAAT
*
36330441 GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTTCTCTACTGTAAC
1 GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAAC
*
36330506 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGTGAGATAGGATTAAT
66 TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTAAT
* * *
36330570 AGCTTAAATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGA
1 GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGA
36330614 AATTATTAGG
Statistics
Matches: 157, Mismatches: 16, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
129 157 1.00
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.30
Consensus pattern (129 bp):
GGCTTCAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTACTCTACTGTAAC
TTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGGGAGATAGGATTAAT
Found at i:36330642 original size:46 final size:46
Alignment explanation
Indices: 36330448--36330829 Score: 136
Period size: 44 Copynumber: 8.7 Consensus size: 46
36330438 ACTGGCTTCA
* * *
36330448 ATCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTG--A-TA--CG
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTATTAG
* * **
36330489 ATCT-TCTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TTA-
1 ATCTGT-TCCACTGTAATC-TCAGGGAGATAAGAT-CTGAAATTATTAG
* * * * *
36330533 ATCCGCTCCACTGTAATCTCAGTGAGATAGGAT-T--AA-TAGCTTAA
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTA--TTAG
* * *
36330577 ATCTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTATTAG
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTATTAG
* * * * *
36330623 GTCTGTTCCACTGTAATCTCAGGGAAATAGGACCTG--A-TA--CG
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTATTAG
* * **
36330664 ATCT-TCTCTACTGTAA-CTTCAGAGAGATAAGATCCT-TTATT-TTA-
1 ATCTGT-TCCACTGTAATC-TCAGGGAGATAAGAT-CTGAAATTATTAG
*** * * * *
36330708 ATCCACTCCACTATAATCTCAGGGAGATAGGAT-T-ACTAACT-TCA-
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGA--AATTATTAG
* * * * *
36330752 ATATGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCG
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTATTAG
* *
36330798 GTCTGTTCCACTGTAATCTCAGGGAAATAAGA
1 ATCTGTTCCACTGTAATCTCAGGGAGATAAGA
36330830 CCTAATGCGA
Statistics
Matches: 251, Mismatches: 56, Indels: 63
0.68 0.15 0.17
Matches are distributed among these distances:
40 4 0.02
41 51 0.20
42 6 0.02
43 7 0.03
44 114 0.45
45 5 0.02
46 60 0.24
47 2 0.01
48 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31
Consensus pattern (46 bp):
ATCTGTTCCACTGTAATCTCAGGGAGATAAGATCTGAAATTATTAG
Found at i:36330663 original size:175 final size:175
Alignment explanation
Indices: 36330449--36330886 Score: 714
Period size: 175 Copynumber: 2.5 Consensus size: 175
36330439 CTGGCTTCAA
* * * *
36330449 TCTGCTCCGCTGTAATCTCAGGGAGATAAGATCTGATACGATCTTCTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGA
* * * *
36330514 GATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAGTGAGATAGGATTAATAGCTTAAAT
66 GATAAGATCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTAATAACTTAAAT
*
36330579 CTGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTATTAGG
131 ATGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTATTAGG
*
36330624 TCTGTTCCACTGTAATCTCAGGGAAATAGGACCTGATACGATCTTCTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGA
* *
36330689 GATAAGATCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTACTAACTTCAAT
66 GATAAGATCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTAATAACTTAAAT
* * *
36330754 ATGCTCCGCTGTAATCTCAGGGAGATAAGATCTGAAATTCTTCGG
131 ATGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTATTAGG
* * *
36330799 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTAATGCGATCTACTCTACTGTAACTTCAGAGA
1 TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGA
36330864 GATAAGATCCTTTATTTTAATCC
66 GATAAGATCCTTTATTTTAATCC
36330887 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 19, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
175 244 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.32
Consensus pattern (175 bp):
TCTGTTCCACTGTAATCTCAGGGAAATAAGACCTGATACGATCTTCTCTACTGTAACTTCAGAGA
GATAAGATCCTTTATTTTAATCCACTCCACTATAATCTCAGGGAGATAGGATTAATAACTTAAAT
ATGCTCCGCTATAATCTCAGGGAGATAAGATCTGAAATTATTAGG
Found at i:36331185 original size:42 final size:41
Alignment explanation
Indices: 36331138--36331273 Score: 98
Period size: 42 Copynumber: 3.2 Consensus size: 41
36331128 ATCTGCTATC
36331138 TTCAATCAGCTCCACTATAACTGATGGAGACAAGGCTTTGTT
1 TTCAATCAGCTCCACTATAAC-GATGGAGACAAGGCTTTGTT
* * * * * * *
36331180 TTCAATCTGCT-TAGTTGTTAACGCA-GGAAGGCAA-GATCTGCTAT
1 TTCAATCAGCTCCA-CT-ATAACG-ATGG-AGACAAGGCTTTG-T-T
*
36331224 CTTTAATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTT
1 -TTCAATCAGCTCCACTATAA-CGATGGAGACAAGGCTTTGTT
36331267 TTCAATC
1 TTCAATC
36331274 TGCTTTGTTG
Statistics
Matches: 67, Mismatches: 16, Indels: 22
0.64 0.15 0.21
Matches are distributed among these distances:
41 1 0.01
42 24 0.36
43 12 0.18
44 11 0.16
45 18 0.27
46 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (41 bp):
TTCAATCAGCTCCACTATAACGATGGAGACAAGGCTTTGTT
Found at i:36331200 original size:87 final size:87
Alignment explanation
Indices: 36331054--36331413 Score: 463
Period size: 87 Copynumber: 4.1 Consensus size: 87
36331044 CTTTTATTTT
* ** * ** * *
36331054 AATCAGCTTCACTGCAACCGATGGAGGCAAGGCTTTGTTTTTTATCTGCTCCGTTGTTAATGCAG
1 AATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACGCAG
36331119 GAAGGCAAGATCTGCTATCTTC
66 GAAGGCAAGATCTGCTATCTTC
* *
36331141 AATCAGCTCCACTATAACTGATGGAGACAAGGCTTTGTTTTCAATCTGCTTAGTTGTTAACGCAG
1 AATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACGCAG
*
36331206 GAAGGCAAGATCTGCTATCTTT
66 GAAGGCAAGATCTGCTATCTTC
* *
36331228 AATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTTGTTGTTAACACAG
1 AATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACGCAG
*
36331293 GAAGGCAATATCTGCTATCTTC
66 GAAGGCAAGATCTGCTATCTTC
* * * * * * *
36331315 AATCAGCTCCACCATAACCGA-GAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCGCTGTCAATG
1 AATCAGCTCCACTATAACCGATG-GAGACAAGGCTTTGT-T-TTCAATCTGCTTCGTTGTTAACG
* *
36331378 CAGGAAGGCAAGATCTGTTGTCTTC
63 CAGGAAGGCAAGATCTGCTATCTTC
*
36331403 AACCAGCTCCA
1 AATCAGCTCCA
36331414 TCACAACTGA
Statistics
Matches: 241, Mismatches: 29, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
86 6 0.02
87 187 0.78
88 48 0.20
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (87 bp):
AATCAGCTCCACTATAACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTCGTTGTTAACGCAG
GAAGGCAAGATCTGCTATCTTC
Found at i:36331387 original size:44 final size:44
Alignment explanation
Indices: 36331336--36331470 Score: 143
Period size: 44 Copynumber: 3.0 Consensus size: 44
36331326 CCATAACCGA
36331336 GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAG
1 GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTC-CTGTCAATGCAG
* * * * **
36331381 GA-AGGCAAGATCTGTTGTCTTCAACCAGC-TCCATCACAACTG-A-
1 GAGAGGCAAGGTTTG-TGTCTTCGACCTGCTTCC-TGTCAA-TGCAG
36331424 GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCACTGTCAATGCAG
1 GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTC-CTGTCAATGCAG
36331469 GA
1 GA
36331471 NNNNNNNNNN
Statistics
Matches: 70, Mismatches: 12, Indels: 16
0.71 0.12 0.16
Matches are distributed among these distances:
43 17 0.24
44 34 0.49
45 19 0.27
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (44 bp):
GAGAGGCAAGGTTTGTGTCTTCGACCTGCTTCCTGTCAATGCAG
Found at i:36331402 original size:88 final size:87
Alignment explanation
Indices: 36331069--36331470 Score: 416
Period size: 87 Copynumber: 4.6 Consensus size: 87
36331059 GCTTCACTGC
* ** * * * *
36331069 AACCGATGGAGGCAAGGCTTTGTTTTTTATCTGCTCCGTTGTTAATGCAGGAAGGCAAGATCTGC
1 AACCGATGGAGACAAGGCTTTGTTTTCAACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGC
*
36331134 TATCTTCAATCAGCTCCACTAT
66 TATCTTCAATCAGCTCCACCAT
* * * * * *
36331156 AACTGATGGAGACAAGGCTTTGTTTTCAATCTGCTTAGTTGTTAACGCAGGAAGGCAAGATCTGC
1 AACCGATGGAGACAAGGCTTTGTTTTCAACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGC
* *
36331221 TATCTTTAATCAGCTCCACTAT
66 TATCTTCAATCAGCTCCACCAT
* * * * ** *
36331243 AACCGATGGAGACAAGGCTTTGTTTTCAATCTGCTTTGTTGTTAACACAGGAAGGCAATATCTGC
1 AACCGATGGAGACAAGGCTTTGTTTTCAACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGC
36331308 TATCTTCAATCAGCTCCACCAT
66 TATCTTCAATCAGCTCCACCAT
* *
36331330 AACCGA-GAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
1 AACCGATG-GAGACAAGGCTTTGT-T-TTCAACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATC
* * * * *
36331393 TGTTGTCTTCAACCAGCTCCATCAC
63 TGCTATCTTCAATCAGCTCCACCAT
* * * *
36331418 AACTGA-GAGAGGCAAGG-TTTGTGTCTTCGACCTGCTTCACTGTCAATGCAGGA
1 AACCGATG-GAGACAAGGCTTTGT-T-TTCAACCTGCTTCGCTGTCAATGCAGGA
36331471 NNNNNNNNNN
Statistics
Matches: 282, Mismatches: 30, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
86 6 0.02
87 175 0.62
88 101 0.36
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (87 bp):
AACCGATGGAGACAAGGCTTTGTTTTCAACCTGCTTCGCTGTCAATGCAGGAAGGCAAGATCTGC
TATCTTCAATCAGCTCCACCAT
Found at i:36331445 original size:43 final size:43
Alignment explanation
Indices: 36331310--36331445 Score: 116
Period size: 44 Copynumber: 3.1 Consensus size: 43
36331300 ATATCTGCTA
* * * *
36331310 TCTTCAATCAGCTCCACCATAACCGAGAGAGGCAAGGTTTGTG
1 TCTTCAACCAGCTCCATCACAACTGAGAGAGGCAAGGTTTGTG
* * ** * *
36331353 TCTTCGACCTGCTTCGC-TGTCAA-TGCAG-GAAGGCAAGATCTGTTG
1 TCTTCAACCAGC-TC-CATCACAACTG-AGAG-AGGCAAGGTTTG-TG
36331398 TCTTCAACCAGCTCCATCACAACTGAGAGAGGCAAGGTTTGTG
1 TCTTCAACCAGCTCCATCACAACTGAGAGAGGCAAGGTTTGTG
36331441 TCTTC
1 TCTTC
36331446 GACCTGCTTC
Statistics
Matches: 69, Mismatches: 16, Indels: 16
0.68 0.16 0.16
Matches are distributed among these distances:
43 19 0.28
44 34 0.49
45 16 0.23
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (43 bp):
TCTTCAACCAGCTCCATCACAACTGAGAGAGGCAAGGTTTGTG
Found at i:36337142 original size:19 final size:20
Alignment explanation
Indices: 36337113--36337161 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
36337103 CACTTCGTGA
* *
36337113 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
36337132 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
36337152 AAATG-AATGC
1 AAATGTAATGC
36337162 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:36338832 original size:109 final size:108
Alignment explanation
Indices: 36338641--36338871 Score: 385
Period size: 109 Copynumber: 2.1 Consensus size: 108
36338631 NNNNNNNNNN
*
36338641 TTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTGGAACGAGAAATCGAAACCCAGTACCT
1 TTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
36338706 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA
66 TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA
* *
36338749 TTTTTGAAAAGTTTTT-AAAAGGATATTTAG-CTATTTGGTCGAACGAGAAATTGAAACCCAGTA
1 -TTTTGAAAA-TTTTTGAAAAGGATATTAAGTC-ATTTGGTCGAACGAGAAATCGAAACCCAGTA
36338812 CCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA
63 CCTTAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA
36338858 TTTTGAAATATTTT
1 TTTTGAAA-ATTTT
36338872 CCTTTTTTTA
Statistics
Matches: 116, Mismatches: 3, Indels: 7
0.92 0.02 0.06
Matches are distributed among these distances:
108 13 0.11
109 98 0.84
110 5 0.04
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Consensus pattern (108 bp):
TTTTGAAAATTTTTGAAAAGGATATTAAGTCATTTGGTCGAACGAGAAATCGAAACCCAGTACCT
TAGGGCACGTTCCTCGAATTTCCAAACGCAAAATATTGCCTTA
Found at i:36339365 original size:31 final size:32
Alignment explanation
Indices: 36339327--36339396 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
36339317 ACATATATAC
*
36339327 GTATATAACTAT-CATAAAATATA-AAAAGTAT
1 GTATATAACTATACA-AAAATATATAAAAATAT
*
36339358 GTATATAAGTATACAAAAATATATAAAAATAT
1 GTATATAACTATACAAAAATATATAAAAATAT
*
36339390 ATATATA
1 GTATATA
36339397 CTCCTATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
31 19 0.56
32 15 0.44
ACGTcount: A:0.57, C:0.04, G:0.06, T:0.33
Consensus pattern (32 bp):
GTATATAACTATACAAAAATATATAAAAATAT
Found at i:36339424 original size:3 final size:3
Alignment explanation
Indices: 36339416--36339462 Score: 76
Period size: 3 Copynumber: 15.3 Consensus size: 3
36339406 ATATAAAAGC
*
36339416 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAC AAT AAT AAAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
36339462 A
1 A
36339463 CGCTAAAATA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (3 bp):
AAT
Found at i:36342616 original size:30 final size:30
Alignment explanation
Indices: 36342583--36342639 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36342573 AACCTTTTAT
* *
36342583 TTTTTCCC-AAAATTTTTACTCTCTCCCAC
1 TTTTTCCCTAAAACTTTTACTCCCTCCCAC
*
36342612 TTTTTCCCTAAAACTTTTATTCCCTCCC
1 TTTTTCCCTAAAACTTTTACTCCCTCCC
36342640 CATCCCACCT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 8 0.33
30 16 0.67
ACGTcount: A:0.19, C:0.35, G:0.00, T:0.46
Consensus pattern (30 bp):
TTTTTCCCTAAAACTTTTACTCCCTCCCAC
Found at i:36355801 original size:23 final size:22
Alignment explanation
Indices: 36355770--36355820 Score: 66
Period size: 23 Copynumber: 2.3 Consensus size: 22
36355760 AAAATTCAAA
36355770 TTTCGAGTTAAACGAATCGAGT
1 TTTCGAGTTAAACGAATCGAGT
* * *
36355792 TATTCGAGTTAATCGAGTTGAGT
1 T-TTCGAGTTAAACGAATCGAGT
36355815 TTTCGA
1 TTTCGA
36355821 ATTCGAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 6 0.24
23 19 0.76
ACGTcount: A:0.27, C:0.12, G:0.24, T:0.37
Consensus pattern (22 bp):
TTTCGAGTTAAACGAATCGAGT
Found at i:36355837 original size:9 final size:9
Alignment explanation
Indices: 36355820--36355856 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
36355810 TGAGTTTTCG
36355820 AATTCGAAT
1 AATTCGAAT
*
36355829 AACTCGAAT
1 AATTCGAAT
36355838 AATTCGAAT
1 AATTCGAAT
36355847 AATTCGAAT
1 AATTCGAAT
36355856 A
1 A
36355857 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:36356104 original size:30 final size:30
Alignment explanation
Indices: 36356070--36356127 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
36356060 AAACCTTTTA
* *
36356070 TTTTCCCCCAAAATTTTTACTCTCTCCCAC
1 TTTTCCCCCAAAACTTTTACTCCCTCCCAC
* *
36356100 TTTTCCCCTAAAACTTTTATTCCCTCCC
1 TTTTCCCCCAAAACTTTTACTCCCTCCC
36356128 CATCTCACCT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.19, C:0.40, G:0.00, T:0.41
Consensus pattern (30 bp):
TTTTCCCCCAAAACTTTTACTCCCTCCCAC
Found at i:36363735 original size:21 final size:23
Alignment explanation
Indices: 36363704--36363765 Score: 78
Period size: 21 Copynumber: 2.8 Consensus size: 23
36363694 AAAATGATCC
36363704 TAATTATATAAAAAGTT-AA-AAT
1 TAATT-TATAAAAAGTTCAACAAT
*
36363726 TAATTTATAAAAATTTCAACAAT
1 TAATTTATAAAAAGTTCAACAAT
36363749 TAATTT-TAAAAA-TTCAA
1 TAATTTATAAAAAGTTCAA
36363766 AAAAATTATA
Statistics
Matches: 37, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
21 15 0.41
22 13 0.35
23 9 0.24
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.39
Consensus pattern (23 bp):
TAATTTATAAAAAGTTCAACAAT
Found at i:36363749 original size:23 final size:21
Alignment explanation
Indices: 36363704--36363767 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
36363694 AAAATGATCC
*
36363704 TAATTATATAAAAAGTTAAAAT
1 TAATT-TATAAAAATTTAAAAT
36363726 TAATTTATAAAAATTTCAACAAT
1 TAATTTATAAAAATTT-AA-AAT
*
36363749 TAATTT-TAAAAATTCAAAA
1 TAATTTATAAAAATTTAAAA
36363768 AAATTATATC
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
20 2 0.05
21 12 0.32
22 15 0.39
23 9 0.24
ACGTcount: A:0.56, C:0.05, G:0.02, T:0.38
Consensus pattern (21 bp):
TAATTTATAAAAATTTAAAAT
Found at i:36365940 original size:108 final size:109
Alignment explanation
Indices: 36365729--36365943 Score: 279
Period size: 108 Copynumber: 2.0 Consensus size: 109
36365719 AAAAATGTTT
* * * *
36365729 TAAGATACATATTGAATTAATATCATGTTTACTTGTGGTCAAATAACTTATTTTAGTATTTCCCT
1 TAAGATACATATTAAATTAATATCATGTCTACTTGTAGTCAAATAACTTATTTTAATATTTCCCT
* ** *
36365794 TAACCGAGTTAGTGTCTGATTAACTCGTGCCATCAACTCAATCA
66 TAACCGAGTTAGGGTCTGATTAACTCGTGAAACCAACTCAATCA
* ** *
36365838 TAAGATATATATTAAATTAATATCATGTCTACTTGTAGTTGAATAA-TTATTTTAATATTTCTCT
1 TAAGATACATATTAAATTAATATCATGTCTACTTGTAGTCAAATAACTTATTTTAATATTTCCCT
* * * *
36365902 TAACTGAGTTAGGGTCTGGTTGACTCTTGAAACCAACTCAAT
66 TAACCGAGTTAGGGTCTGATTAACTCGTGAAACCAACTCAAT
36365944 AAGAGTCTTA
Statistics
Matches: 90, Mismatches: 16, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
108 50 0.56
109 40 0.44
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (109 bp):
TAAGATACATATTAAATTAATATCATGTCTACTTGTAGTCAAATAACTTATTTTAATATTTCCCT
TAACCGAGTTAGGGTCTGATTAACTCGTGAAACCAACTCAATCA
Found at i:36369817 original size:27 final size:27
Alignment explanation
Indices: 36369781--36369875 Score: 103
Period size: 27 Copynumber: 3.7 Consensus size: 27
36369771 ATTATTTATA
*
36369781 TATATTTGCATGAACTTGATTGTTACG
1 TATATTTGCATGAACTTGATTGTAACG
*
36369808 TATATTTGCACGAAC----TTGTAAC-
1 TATATTTGCATGAACTTGATTGTAACG
* *
36369830 -ATATTTGCATAAACTTGATTGTCACG
1 TATATTTGCATGAACTTGATTGTAACG
*
36369856 CATATTTGCATGAACTTGAT
1 TATATTTGCATGAACTTGAT
36369876 GGGCATGTAT
Statistics
Matches: 56, Mismatches: 6, Indels: 12
0.76 0.08 0.16
Matches are distributed among these distances:
21 12 0.21
23 6 0.11
25 6 0.11
27 32 0.57
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.40
Consensus pattern (27 bp):
TATATTTGCATGAACTTGATTGTAACG
Found at i:36369861 original size:48 final size:48
Alignment explanation
Indices: 36369782--36369873 Score: 148
Period size: 48 Copynumber: 1.9 Consensus size: 48
36369772 TTATTTATAT
* * *
36369782 ATATTTGCATGAACTTGATTGTTACGTATATTTGCACGAACTTGTAAC
1 ATATTTGCATAAACTTGATTGTCACGCATATTTGCACGAACTTGTAAC
*
36369830 ATATTTGCATAAACTTGATTGTCACGCATATTTGCATGAACTTG
1 ATATTTGCATAAACTTGATTGTCACGCATATTTGCACGAACTTG
36369874 ATGGGCATGT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 40 1.00
ACGTcount: A:0.29, C:0.15, G:0.16, T:0.39
Consensus pattern (48 bp):
ATATTTGCATAAACTTGATTGTCACGCATATTTGCACGAACTTGTAAC
Found at i:36370640 original size:23 final size:21
Alignment explanation
Indices: 36370612--36370665 Score: 65
Period size: 22 Copynumber: 2.5 Consensus size: 21
36370602 CACAATTAAA
*
36370612 TAGAAAATTTATGTGCAACTAT
1 TAGAAAATTTACGTGCAAC-AT
36370634 TATGAAAA-TTACGTGCAACAT
1 TA-GAAAATTTACGTGCAACAT
36370655 TAGAACAATTT
1 TAGAA-AATTT
36370666 TTTACCATGA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
20 3 0.11
21 6 0.21
22 14 0.50
23 5 0.18
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (21 bp):
TAGAAAATTTACGTGCAACAT
Found at i:36372401 original size:19 final size:20
Alignment explanation
Indices: 36372379--36372417 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
36372369 CCCATTTTCG
36372379 TAATCAATA-AAA-ATATAAT
1 TAATCAA-ACAAACATATAAT
36372398 TAATCAAACAAACATATAAT
1 TAATCAAACAAACATATAAT
36372418 GTTCACTTTT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
18 1 0.06
19 10 0.56
20 7 0.39
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.28
Consensus pattern (20 bp):
TAATCAAACAAACATATAAT
Found at i:36372458 original size:20 final size:20
Alignment explanation
Indices: 36372426--36372466 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
36372416 ATGTTCACTT
*
36372426 TTATGTATTAAAATATACAA
1 TTATGTATTAAAAAATACAA
36372446 TTAT-TATTAAAAAAATACAA
1 TTATGTATT-AAAAAATACAA
36372466 T
1 T
36372467 AGTCAAACCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.54, C:0.05, G:0.02, T:0.39
Consensus pattern (20 bp):
TTATGTATTAAAAAATACAA
Found at i:36372836 original size:22 final size:22
Alignment explanation
Indices: 36372808--36372884 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
36372798 TTTCTTTTAA
36372808 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
** * *
36372830 TTAGGAGATAATATTTTGGTTTAA--
1 TTAGGAGAT--TA-GAT-GCTAAAGT
36372854 TTAGGAGATTAGATGCTAAAGT
1 TTAGGAGATTAGATGCTAAAGT
36372876 TTAGGAGAT
1 TTAGGAGAT
36372885 AATATTTTGG
Statistics
Matches: 41, Mismatches: 8, Indels: 12
0.67 0.13 0.20
Matches are distributed among these distances:
20 4 0.10
21 1 0.02
22 20 0.49
24 11 0.27
25 1 0.02
26 4 0.10
ACGTcount: A:0.35, C:0.03, G:0.26, T:0.36
Consensus pattern (22 bp):
TTAGGAGATTAGATGCTAAAGT
Found at i:36372857 original size:46 final size:46
Alignment explanation
Indices: 36372803--36372897 Score: 190
Period size: 46 Copynumber: 2.1 Consensus size: 46
36372793 TCTCTTTTCT
36372803 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
36372849 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
36372895 TTT
1 TTT
36372898 TGGGAAAGGT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 49 1.00
ACGTcount: A:0.34, C:0.02, G:0.23, T:0.41
Consensus pattern (46 bp):
TTTAATTAGGAGATTAGATGCTAAAGTTTAGGAGATAATATTTTGG
Found at i:36377039 original size:46 final size:47
Alignment explanation
Indices: 36376943--36377039 Score: 169
Period size: 46 Copynumber: 2.1 Consensus size: 47
36376933 CCTCTTTTCT
36376943 TTTAATTAGGAGATTAGATGCTAAAAAGATTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCT-AAAAGATTAGGAGATAATATTTTGG
*
36376991 TTTAATTAGGAGATTAGATGCT-AAAGTTTAGGAGATAATATTTTGG
1 TTTAATTAGGAGATTAGATGCTAAAAGATTAGGAGATAATATTTTGG
36377037 TTT
1 TTT
36377040 CTATCTTTGT
Statistics
Matches: 48, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
46 26 0.54
48 22 0.46
ACGTcount: A:0.36, C:0.02, G:0.23, T:0.39
Consensus pattern (47 bp):
TTTAATTAGGAGATTAGATGCTAAAAGATTAGGAGATAATATTTTGG
Found at i:36379118 original size:2 final size:2
Alignment explanation
Indices: 36379111--36379136 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36379101 CTACTCTTTG
36379111 CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT
36379137 ATATATATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:36380988 original size:20 final size:20
Alignment explanation
Indices: 36380950--36380988 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
36380940 GACTCTTCAA
** *
36380950 ATGCATGGAAATTCTTGGAC
1 ATGCATGGAAAAACATGGAC
36380970 ATGCATGGAAAAACATGGA
1 ATGCATGGAAAAACATGGA
36380989 AAGAATTGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.38, C:0.13, G:0.26, T:0.23
Consensus pattern (20 bp):
ATGCATGGAAAAACATGGAC
Found at i:36381966 original size:121 final size:119
Alignment explanation
Indices: 36381776--36382019 Score: 364
Period size: 121 Copynumber: 2.0 Consensus size: 119
36381766 ATCTACTAAC
* * * * *
36381776 AAATTCGTTCTCAGACTTTTTTGATGAACTTCATTTTCTCTATCCATATTAAACTTTGAAAACAC
1 AAATTCGTTCTCAGACTTTCTGGACGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACAC
* * *
36381841 CTCATCAATTTCAGTCTACAAAGAATTTGACTTAAAATTTGAGCTTTTCATCTTTT
66 CTCATCAATTTCAGCCTACAAAGAATTGGA-TTAAAATTTGAGCTTTTAATC-TTT
36381897 AAATTCGTTC-CAAGACTTTCTGGACGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACA
1 AAATTCGTTCTC-AGACTTTCTGGACGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACA
* *
36381961 CCTCATCAATTTGAGCCTTCAAAGAATTGGATTAAAATTTGAGCTTTTAATCTTT
65 CCTCATCAATTTCAGCCTACAAAGAATTGGATTAAAATTTGAGCTTTTAATCTTT
36382016 AAAT
1 AAAT
36382020 ATTGTGTATA
Statistics
Matches: 112, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
119 7 0.06
120 21 0.19
121 84 0.75
ACGTcount: A:0.32, C:0.19, G:0.09, T:0.39
Consensus pattern (119 bp):
AAATTCGTTCTCAGACTTTCTGGACGAACCTCATTTTCTCTATCCATATTAAAATTTGAAAACAC
CTCATCAATTTCAGCCTACAAAGAATTGGATTAAAATTTGAGCTTTTAATCTTT
Found at i:36389738 original size:31 final size:30
Alignment explanation
Indices: 36389703--36389762 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
36389693 GGAGGTGGGA
*
36389703 TGGGAAGGGAATAAAAGTTTTAGGGGAAAAG
1 TGGG-AGGGAATAAAAATTTTAGGGGAAAAG
* * *
36389734 TGGGAGTGAGTAAAAATTTTGGGGGAAAA
1 TGGGAGGGAATAAAAATTTTAGGGGAAAA
36389763 TAAAAGGTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 21 0.84
31 4 0.16
ACGTcount: A:0.40, C:0.00, G:0.38, T:0.22
Consensus pattern (30 bp):
TGGGAGGGAATAAAAATTTTAGGGGAAAAG
Found at i:36393271 original size:16 final size:14
Alignment explanation
Indices: 36393215--36393276 Score: 56
Period size: 16 Copynumber: 4.3 Consensus size: 14
36393205 CAAAGAAATA
36393215 AAAGAAAAAG-AA-
1 AAAGAAAAAGAAAC
*
36393227 ATAGAAAAAGAAAC
1 AAAGAAAAAGAAAC
36393241 AAAGAACAAACGAAAC
1 AAAGAA-AAA-GAAAC
*
36393257 AGGAAGAAAAAGAAAG
1 A--AAGAAAAAGAAAC
36393273 AAAG
1 AAAG
36393277 GAGAAACTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 10
0.76 0.06 0.19
Matches are distributed among these distances:
12 9 0.22
13 2 0.05
14 8 0.20
15 3 0.07
16 11 0.27
17 3 0.07
18 5 0.12
ACGTcount: A:0.73, C:0.06, G:0.19, T:0.02
Consensus pattern (14 bp):
AAAGAAAAAGAAAC
Found at i:36394152 original size:41 final size:41
Alignment explanation
Indices: 36394089--36394227 Score: 126
Period size: 40 Copynumber: 3.5 Consensus size: 41
36394079 GACTTCAATT
* * * *
36394089 CGATGAGAAACTGGGTGTCAATTTATTACTTTGGATTAATT
1 CGATGAGACACTAGGTGCCAATTTATTACTTTGGATTAATC
* * * *
36394130 CGATGAGGCACTAGGTGCCAA--T-TTACTTCGG-TTTAGC
1 CGATGAGACACTAGGTGCCAATTTATTACTTTGGATTAATC
* * **
36394167 CGATGAGACATTAGGTGTCAATTTATTACTTTAAATT-ATC
1 CGATGAGACACTAGGTGCCAATTTATTACTTTGGATTAATC
*
36394207 CGATGAGGCACTAGGTGCCAA
1 CGATGAGACACTAGGTGCCAA
36394228 ACTGGTGTGT
Statistics
Matches: 76, Mismatches: 18, Indels: 9
0.74 0.17 0.09
Matches are distributed among these distances:
37 21 0.28
38 8 0.11
39 2 0.03
40 26 0.34
41 19 0.25
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (41 bp):
CGATGAGACACTAGGTGCCAATTTATTACTTTGGATTAATC
Found at i:36394210 original size:40 final size:38
Alignment explanation
Indices: 36394102--36394223 Score: 113
Period size: 37 Copynumber: 3.1 Consensus size: 38
36394092 TGAGAAACTG
*
36394102 GGTGTCAATTTATTACTTTGGATTAATTCGATGAGGCACTA
1 GGTGTCAATTTATTACTTT--ATT-ATCCGATGAGGCACTA
* ** * * *
36394143 GGTGCCAATTTACTT-CGGT-TTAGCCGATGAGACATTA
1 GGTGTCAATTTA-TTACTTTATTATCCGATGAGGCACTA
36394180 GGTGTCAATTTATTACTTTAAATTATCCGATGAGGCACTA
1 GGTGTCAATTTATTACTTT--ATTATCCGATGAGGCACTA
36394220 GGTG
1 GGTG
36394224 CCAAACTGGT
Statistics
Matches: 63, Mismatches: 13, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
36 2 0.03
37 25 0.40
38 2 0.03
40 19 0.30
41 13 0.21
42 2 0.03
ACGTcount: A:0.26, C:0.15, G:0.23, T:0.36
Consensus pattern (38 bp):
GGTGTCAATTTATTACTTTATTATCCGATGAGGCACTA
Found at i:36398158 original size:18 final size:17
Alignment explanation
Indices: 36398132--36398167 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
36398122 GGTGCTCATG
*
36398132 GGCCGGACGGCCCGGCCC
1 GGCCCGACGGCCC-GCCC
36398150 GGCCCGACGGCCCGCCC
1 GGCCCGACGGCCCGCCC
36398167 G
1 G
36398168 AAATATGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.06, C:0.53, G:0.42, T:0.00
Consensus pattern (17 bp):
GGCCCGACGGCCCGCCC
Found at i:36398331 original size:51 final size:51
Alignment explanation
Indices: 36398261--36398406 Score: 222
Period size: 51 Copynumber: 2.9 Consensus size: 51
36398251 AATATTTTTA
* *
36398261 TTTTTTTAATTTTTTTAATTTTAAAATACTTTTAAAATACTTTTAAAATAC
1 TTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTAAAATAC
* * **
36398312 TTTTTTAAAATTTTTTAATTTTAAAA-ATTTTTTTAAATTTTTTTAAAATAC
1 TTTTTTAAATTTTTTTAATTTTAAAATA-TTTTTAAAATACTTTTAAAATAC
36398363 TTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
1 TTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTT
36398407 TTTAATTTTT
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
50 1 0.01
51 81 0.98
52 1 0.01
ACGTcount: A:0.36, C:0.03, G:0.00, T:0.60
Consensus pattern (51 bp):
TTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTAAAATAC
Found at i:36398389 original size:17 final size:17
Alignment explanation
Indices: 36398364--36398397 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36398354 TTAAAATACT
* *
36398364 TTTTTAAATTTTTTTAA
1 TTTTAAAATATTTTTAA
36398381 TTTTAAAATATTTTTAA
1 TTTTAAAATATTTTTAA
36398398 AATACTTTTT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTTAAAATATTTTTAA
Found at i:36398395 original size:11 final size:11
Alignment explanation
Indices: 36398279--36398407 Score: 82
Period size: 11 Copynumber: 12.4 Consensus size: 11
36398269 ATTTTTTTAA
*
36398279 TTTTAAAATAC
1 TTTTAAAATAT
*
36398290 TTTTAAAATAC
1 TTTTAAAATAT
36398301 TTTTAAAATACTT
1 TTTTAAAATA--T
36398314 TTTTAAAAT-T
1 TTTTAAAATAT
36398324 TTTT---A-AT
1 TTTTAAAATAT
*
36398331 TTTAAAAAT-T
1 TTTTAAAATAT
* *
36398341 TTTTTAAATTT
1 TTTTAAAATAT
36398352 TTTTAAAATACT
1 TTTTAAAATA-T
*
36398364 TTTTTAAAT-T
1 TTTTAAAATAT
*
36398374 TTTT----TAA
1 TTTTAAAATAT
36398381 TTTTAAAATAT
1 TTTTAAAATAT
36398392 TTTTAAAATACT
1 TTTTAAAATA-T
36398404 TTTT
1 TTTT
36398408 TTAATTTTTA
Statistics
Matches: 94, Mismatches: 9, Indels: 29
0.71 0.07 0.22
Matches are distributed among these distances:
6 1 0.01
7 9 0.10
10 19 0.20
11 42 0.45
12 14 0.15
13 9 0.10
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.58
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:36398396 original size:40 final size:40
Alignment explanation
Indices: 36398341--36398416 Score: 125
Period size: 40 Copynumber: 1.9 Consensus size: 40
36398331 TTTAAAAATT
* *
36398341 TTTTTAAATTTTTTTAAAATACTTTTTTAAATTTTTTTAA
1 TTTTAAAATATTTTTAAAATACTTTTTTAAATTTTTTTAA
*
36398381 TTTTAAAATATTTTTAAAATACTTTTTTTAATTTTT
1 TTTTAAAATATTTTTAAAATACTTTTTTAAATTTTT
36398417 ATTTTAATTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (40 bp):
TTTTAAAATATTTTTAAAATACTTTTTTAAATTTTTTTAA
Found at i:36398428 original size:51 final size:52
Alignment explanation
Indices: 36398259--36398428 Score: 199
Period size: 51 Copynumber: 3.3 Consensus size: 52
36398249 TAAATATTTT
* *
36398259 TATTTTTTT-AATTTTTTTAATTTTAAAATACTTTTAAAATAC-TTTTAAAA
1 TATTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAA
* * *
36398309 TACTTTTTTAAAATTTTTTAATTTTAAAA-ATTTTTTTAAAT--TTTTTTAAAA
1 TATTTTTTTAAATTTTTTTAATTTTAAAATA-TTTTTAAAATACTTTTTT-AAA
* *
36398360 TACTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTTAA
1 TATTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAA
*
36398412 T-TTTTATTTTAATTTTT
1 TATTTT-TTTAAATTTTT
36398429 AAAAATAAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 14
0.81 0.08 0.11
Matches are distributed among these distances:
50 13 0.13
51 69 0.68
52 14 0.14
53 6 0.06
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (52 bp):
TATTTTTTTAAATTTTTTTAATTTTAAAATATTTTTAAAATACTTTTTTAAA
Found at i:36402436 original size:128 final size:129
Alignment explanation
Indices: 36402197--36402453 Score: 507
Period size: 128 Copynumber: 2.0 Consensus size: 129
36402187 GAGATGACAT
36402197 CGACAAAAGATAAAAAACTTTGCCTTTTCCAGAACAAAACTTAAATGAAACTATCCCTAGTACTA
1 CGACAAAAGATAAAAAACTTTGCCTTTTCCAGAACAAAACTTAAATGAAACTATCCCTAGTACTA
36402262 GTACACAATTTCAATGGGTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAAGTTA
66 GTACACAATTTCAATGGGTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAAGTTA
36402326 CGACAAAAGA-AAAAAACTTTGCCTTTTCCAGAACAAAACTTAAATGAAACTATCCCTAGTACTA
1 CGACAAAAGATAAAAAACTTTGCCTTTTCCAGAACAAAACTTAAATGAAACTATCCCTAGTACTA
36402390 GTACACAATTTCAATGGGTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAAGTTA
66 GTACACAATTTCAATGGGTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAAGTTA
36402454 TGTTCTTTAG
Statistics
Matches: 128, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
128 118 0.92
129 10 0.08
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (129 bp):
CGACAAAAGATAAAAAACTTTGCCTTTTCCAGAACAAAACTTAAATGAAACTATCCCTAGTACTA
GTACACAATTTCAATGGGTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAAGTTA
Done.