Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 113 of 163
Found at i:36402472 original size:43 final size:43
Alignment explanation
Indices: 36402407--36402593 Score: 137
Period size: 43 Copynumber: 4.4 Consensus size: 43
36402397 ATTTCAATGG
* *
36402407 GTTATGTTCTTTAGCGGTGTTTGTGGGGAAAACGCTGCTAAAA
1 GTTATGTTCTTTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAA
* **
36402450 GTTATGTTCTTTAGCTGCGTTTGTGGGGAAAGGGCCGCTAAAA
1 GTTATGTTCTTTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAA
* * * * * * * *
36402493 GTCATATT-TTATAGCGACATTTG-GGAGAAAGCGCC-ATTAAA
1 GTTATGTTCTT-TAGCGGCGTTTGTGGGGAAAACGCCGCTAAAA
* * * * * * *
36402534 GATCACGTTCTTTAGCGGTGTTTGTGGGGCAAGCACCGCCAAAA
1 G-TTATGTTCTTTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAA
* *
36402578 GTCATGTTCTATAGCG
1 GTTATGTTCTTTAGCG
36402594 ATGTTTTACC
Statistics
Matches: 112, Mismatches: 27, Indels: 10
0.75 0.18 0.07
Matches are distributed among these distances:
41 5 0.04
42 26 0.23
43 77 0.69
44 4 0.04
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
GTTATGTTCTTTAGCGGCGTTTGTGGGGAAAACGCCGCTAAAA
Found at i:36404526 original size:17 final size:16
Alignment explanation
Indices: 36404495--36404545 Score: 59
Period size: 17 Copynumber: 3.2 Consensus size: 16
36404485 GACAAGATAT
*
36404495 TTTTTTCTTTGCTTTA
1 TTTTTTCTTTTCTTTA
*
36404511 TTTTTTCTTTCTCTTTC
1 TTTTTTCTTT-TCTTTA
*
36404528 GTTTTTCTTTT-TTTA
1 TTTTTTCTTTTCTTTA
36404543 TTT
1 TTT
36404546 GAAGGAAAGA
Statistics
Matches: 29, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
15 5 0.17
16 11 0.38
17 13 0.45
ACGTcount: A:0.04, C:0.14, G:0.04, T:0.78
Consensus pattern (16 bp):
TTTTTTCTTTTCTTTA
Found at i:36406626 original size:28 final size:28
Alignment explanation
Indices: 36406586--36406647 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
36406576 ATTGGAAGTC
*
36406586 GAGCATGGATGAACCGAAGAGAGAAAGG
1 GAGCATAGATGAACCGAAGAGAGAAAGG
*
36406614 GAGCATAGATGAACCGAAGAGAGAAATG
1 GAGCATAGATGAACCGAAGAGAGAAAGG
36406642 GAGCAT
1 GAGCAT
36406648 GGAACCAAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.44, C:0.11, G:0.35, T:0.10
Consensus pattern (28 bp):
GAGCATAGATGAACCGAAGAGAGAAAGG
Found at i:36407728 original size:19 final size:20
Alignment explanation
Indices: 36407693--36407731 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
36407683 ACATGTATGA
36407693 TAATAATAAACATATGTATT
1 TAATAATAAACATATGTATT
36407713 TAATAATAAA-ATATGTATT
1 TAATAATAAACATATGTATT
36407732 ATTTATTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.03, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATAATAAACATATGTATT
Found at i:36407793 original size:5 final size:5
Alignment explanation
Indices: 36407774--36407822 Score: 55
Period size: 5 Copynumber: 10.0 Consensus size: 5
36407764 TTATTATAAT
* * * *
36407774 TAAAA CAAAA T-AAA TAAAA TGAAA TGAAA TGAAA TAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
36407823 AAACAAAAGG
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
4 4 0.10
5 35 0.90
ACGTcount: A:0.73, C:0.02, G:0.06, T:0.18
Consensus pattern (5 bp):
TAAAA
Found at i:36407798 original size:10 final size:10
Alignment explanation
Indices: 36407780--36407822 Score: 61
Period size: 10 Copynumber: 4.4 Consensus size: 10
36407770 TAATTAAAAC
36407780 AAAAT-AAAT
1 AAAATGAAAT
36407789 AAAATGAAAT
1 AAAATGAAAT
*
36407799 GAAATGAAAT
1 AAAATGAAAT
*
36407809 AAAATAAAAT
1 AAAATGAAAT
36407819 AAAA
1 AAAA
36407823 AAACAAAAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.74, C:0.00, G:0.07, T:0.19
Consensus pattern (10 bp):
AAAATGAAAT
Found at i:36408806 original size:13 final size:14
Alignment explanation
Indices: 36408785--36408824 Score: 55
Period size: 13 Copynumber: 2.9 Consensus size: 14
36408775 ACTTGATTGG
36408785 AAAATGAATTAAA-
1 AAAATGAATTAAAT
*
36408798 AATATGAATTAAAT
1 AAAATGAATTAAAT
36408812 AAAAGTGAATTAA
1 AAAA-TGAATTAA
36408825 TTTATGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 3 0.13
15 8 0.35
ACGTcount: A:0.62, C:0.00, G:0.10, T:0.28
Consensus pattern (14 bp):
AAAATGAATTAAAT
Found at i:36409204 original size:23 final size:22
Alignment explanation
Indices: 36409175--36409237 Score: 76
Period size: 21 Copynumber: 2.9 Consensus size: 22
36409165 AGACACTTTA
* *
36409175 TGTGTCGTATTTTAGGTACCTCG
1 TGTGTCGTA-TTCAGGCACCTCG
36409198 TGTGTCGTA-TCAGGCACCTCG
1 TGTGTCGTATTCAGGCACCTCG
*
36409219 TGTGTCGTA-TCAAGCACCT
1 TGTGTCGTATTCAGGCACCT
36409238 ATGTGTTGTA
Statistics
Matches: 37, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 28 0.76
23 9 0.24
ACGTcount: A:0.16, C:0.24, G:0.25, T:0.35
Consensus pattern (22 bp):
TGTGTCGTATTCAGGCACCTCG
Found at i:36409216 original size:21 final size:21
Alignment explanation
Indices: 36409192--36409237 Score: 83
Period size: 21 Copynumber: 2.2 Consensus size: 21
36409182 TATTTTAGGT
*
36409192 ACCTCGTGTGTCGTATCAGGC
1 ACCTCGTGTGTCGTATCAAGC
36409213 ACCTCGTGTGTCGTATCAAGC
1 ACCTCGTGTGTCGTATCAAGC
36409234 ACCT
1 ACCT
36409238 ATGTGTTGTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.17, C:0.30, G:0.24, T:0.28
Consensus pattern (21 bp):
ACCTCGTGTGTCGTATCAAGC
Found at i:36409248 original size:20 final size:21
Alignment explanation
Indices: 36409192--36409248 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
36409182 TATTTTAGGT
* *
36409192 ACCTCGTGTGTCGTATCAGGC
1 ACCTCATGTGTCGTATCAAGC
*
36409213 ACCTCGTGTGTCGTATCAAGC
1 ACCTCATGTGTCGTATCAAGC
*
36409234 ACCT-ATGTGTTGTAT
1 ACCTCATGTGTCGTAT
36409249 ACTAATCAGG
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 9 0.27
21 24 0.73
ACGTcount: A:0.18, C:0.25, G:0.25, T:0.33
Consensus pattern (21 bp):
ACCTCATGTGTCGTATCAAGC
Found at i:36432947 original size:17 final size:17
Alignment explanation
Indices: 36432925--36432958 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
36432915 TGAAGCTCAG
*
36432925 ACTTCGAAGGCTCGTTA
1 ACTTCGAAGGCTAGTTA
36432942 ACTTCGAAGGCTAGTTA
1 ACTTCGAAGGCTAGTTA
36432959 TTTGCAATTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.29
Consensus pattern (17 bp):
ACTTCGAAGGCTAGTTA
Found at i:36440045 original size:12 final size:12
Alignment explanation
Indices: 36440028--36440052 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36440018 TGCTTACCCC
36440028 TAAATCATGTGT
1 TAAATCATGTGT
36440040 TAAATCATGTGT
1 TAAATCATGTGT
36440052 T
1 T
36440053 TGCAGGGTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.16, T:0.44
Consensus pattern (12 bp):
TAAATCATGTGT
Found at i:36443108 original size:18 final size:19
Alignment explanation
Indices: 36443074--36443113 Score: 64
Period size: 18 Copynumber: 2.1 Consensus size: 19
36443064 ATTAAATATT
36443074 AAATATTTACTTTTAAATTA
1 AAATATTTAC-TTTAAATTA
36443094 AAATATTTA-TTTAAATTA
1 AAATATTTACTTTAAATTA
36443112 AA
1 AA
36443114 TTTAAATAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 11 0.55
20 9 0.45
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (19 bp):
AAATATTTACTTTAAATTA
Found at i:36443118 original size:24 final size:23
Alignment explanation
Indices: 36443062--36443119 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 23
36443052 GTTTAAATAA
36443062 TAATTAAATATT-AAATATTTACT
1 TAATTAAAT-TTAAAATATTTACT
*
36443085 T--TTAAA-TTAAAATATTTATT
1 TAATTAAATTTAAAATATTTACT
36443105 TAAATTAAATTTAAA
1 T-AATTAAATTTAAA
36443120 TAAATATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 9
0.74 0.03 0.23
Matches are distributed among these distances:
19 2 0.07
20 11 0.38
21 5 0.17
23 6 0.21
24 5 0.17
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATTAAATTTAAAATATTTACT
Found at i:36451991 original size:2 final size:2
Alignment explanation
Indices: 36451984--36452009 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36451974 TTCATATAAT
36451984 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
36452010 AAATAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36460516 original size:26 final size:26
Alignment explanation
Indices: 36460487--36460552 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
36460477 TTTTCAAAAA
36460487 TTATTACTTTTATAAAGTAGCACTAG
1 TTATTACTTTTATAAAGTAGCACTAG
* *
36460513 TTATTACATTGATAAAGTAGCACTAG
1 TTATTACTTTTATAAAGTAGCACTAG
*
36460539 -T-TTATTTTTATAAA
1 TTATTACTTTTATAAA
36460553 CAAAAATCTT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
24 10 0.29
25 1 0.03
26 24 0.69
ACGTcount: A:0.36, C:0.09, G:0.11, T:0.44
Consensus pattern (26 bp):
TTATTACTTTTATAAAGTAGCACTAG
Found at i:36461080 original size:16 final size:15
Alignment explanation
Indices: 36461061--36461114 Score: 54
Period size: 16 Copynumber: 3.3 Consensus size: 15
36461051 ATATTTGTAG
36461061 TTTTATATTTTTATGA
1 TTTTATATTTTTAT-A
*
36461077 TTTTATATATTTTATT
1 TTTTATAT-TTTTATA
36461093 TTTTATAATTTATTATCA
1 TTTTAT-ATTT-TTAT-A
36461111 TTTT
1 TTTT
36461115 CCTAACTTTT
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
16 16 0.50
17 12 0.38
18 4 0.12
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (15 bp):
TTTTATATTTTTATA
Found at i:36461114 original size:19 final size:17
Alignment explanation
Indices: 36461061--36461150 Score: 62
Period size: 19 Copynumber: 5.1 Consensus size: 17
36461051 ATATTTGTAG
36461061 TTTTAT-ATTTTTATGA-
1 TTTTATAATTTTTAT-AT
36461077 TTTTAT-ATATTTTAT-T
1 TTTTATAAT-TTTTATAT
36461093 TTTTATAATTTATTATCAT
1 TTTTATAATTT-TTAT-AT
**
36461112 TTTCCTAACTTTTTATTAT
1 TTTTATAA-TTTTTA-TAT
*
36461131 ATTTATAATTTTTTATAT
1 TTTTATAA-TTTTTATAT
36461149 TT
1 TT
36461151 GCAAACATGT
Statistics
Matches: 59, Mismatches: 7, Indels: 14
0.74 0.09 0.17
Matches are distributed among these distances:
16 16 0.27
17 12 0.20
18 4 0.07
19 23 0.39
20 4 0.07
ACGTcount: A:0.27, C:0.04, G:0.01, T:0.68
Consensus pattern (17 bp):
TTTTATAATTTTTATAT
Found at i:36463289 original size:26 final size:27
Alignment explanation
Indices: 36463260--36463313 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
36463250 AATTAATACT
* *
36463260 TTAAGTACCAAA-TTAAAATAAAAAAA
1 TTAAATACCAAAGTAAAAATAAAAAAA
* *
36463286 TTAAATTCCAAAGTAAAAATAAATAAA
1 TTAAATACCAAAGTAAAAATAAAAAAA
36463313 T
1 T
36463314 ATACTTCAGA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.63, C:0.07, G:0.04, T:0.26
Consensus pattern (27 bp):
TTAAATACCAAAGTAAAAATAAAAAAA
Found at i:36466639 original size:34 final size:35
Alignment explanation
Indices: 36466581--36466647 Score: 118
Period size: 34 Copynumber: 1.9 Consensus size: 35
36466571 CAAACACCAG
36466581 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
*
36466616 AAAATATTTTCCAG-AAATCATTTTACGGAAAA
1 AAAATATTTTCCAGTAAATCATTTTACAGAAAA
36466648 TATTTTACTG
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
34 17 0.55
35 14 0.45
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (35 bp):
AAAATATTTTCCAGTAAATCATTTTACAGAAAAGT
Found at i:36472189 original size:44 final size:45
Alignment explanation
Indices: 36472141--36472340 Score: 159
Period size: 45 Copynumber: 4.3 Consensus size: 45
36472131 GCAACCTTAG
* * * **
36472141 GGAGATTAGATTC-GTATCTTCAATCTGCTCTGCTGTAACTTTAA
1 GGAGATAAGATTCACTACCTTCAATCTGCTCCACTGTAACTTTAA
*
36472185 GGAGATAAGATTCACTACCTTCAATCTGCTCCACTGTAACTTTAG
1 GGAGATAAGATTCACTACCTTCAATCTGCTCCACTGTAACTTTAA
* * * * * *
36472230 GGAGATAAGATTGGTGACTTGCAGCTTTAATCTGTTCCACTGCAACTTTAG
1 GGAGATAAGA-T--TCAC-T--ACCTTCAATCTGCTCCACTGTAACTTTAA
* * ** ** * *
36472281 GGAAATAAGCTTTGCTATATTCAATCTGCTCCACTGCAACTTTAG
1 GGAGATAAGATTCACTACCTTCAATCTGCTCCACTGTAACTTTAA
36472326 GGAGATAAGATTCAC
1 GGAGATAAGATTCAC
36472341 CACGATGACT
Statistics
Matches: 126, Mismatches: 23, Indels: 13
0.78 0.14 0.08
Matches are distributed among these distances:
44 12 0.10
45 72 0.57
46 1 0.01
47 1 0.01
48 5 0.04
49 1 0.01
50 1 0.01
51 33 0.26
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.33
Consensus pattern (45 bp):
GGAGATAAGATTCACTACCTTCAATCTGCTCCACTGTAACTTTAA
Found at i:36472776 original size:262 final size:262
Alignment explanation
Indices: 36472303--36472798 Score: 839
Period size: 262 Copynumber: 1.9 Consensus size: 262
36472293 TGCTATATTC
* *
36472303 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTCACCACGATGACTTCAATCTGTCCCACTGC
1 AATCTGATCCACTGCAACTTTAGGGAGATAAGATTCACCACGATGACTTCAATCCGTCCCACTGC
*
36472368 AACTTCAGGGGTATAGGATTTGTGGTTTCACTAATCTGTTACACCATTCTCTAGGGAACATGACC
66 AACGTCAGGGGTATAGGATTTGTGGTTTCACTAATCTGTTACACCATTCTCTAGGGAACATGACC
*
36472433 TGTAGAATCCATTTCATAGGCCTATATTTATGCCAAATGATTAGGATGTTATGATCAGAATGAAT
131 TGTAGAATCCATTTCATAGGCCTATATTTATGCCAAACGATTAGGATGTTATGATCAGAATGAAT
*
36472498 CAGATACTCTTAACTAGATGTGTATGAATGATATTTGCAACTTTAGGGAGATAAGATTTATGGCT
196 CAGATACTCCTAACTAGATGTGTATGAATGATATTTGCAACTTTAGGGAGATAAGATTTATGGCT
36472563 TT
261 TT
* * *
36472565 AATCTGATCCACTGTAACTTTAGGGAGATAAGATTCGCCACGATTACTTCAATCCGTCCCACTGC
1 AATCTGATCCACTGCAACTTTAGGGAGATAAGATTCACCACGATGACTTCAATCCGTCCCACTGC
* ** * *
36472630 AACGTCAGGGGTATAGGATTTGTGGTTTCACTGATCTGTTACACTGTTCTTTGGGGAACATGACC
66 AACGTCAGGGGTATAGGATTTGTGGTTTCACTAATCTGTTACACCATTCTCTAGGGAACATGACC
* *
36472695 TGTAGAATCCATTTCATGGGCCTATATTTATGCCAAGCGATTAGGATGTTATGATCAGAATGAAT
131 TGTAGAATCCATTTCATAGGCCTATATTTATGCCAAACGATTAGGATGTTATGATCAGAATGAAT
**
36472760 CAGATGTTCCTAACTAGATGTGTATGAATGATATTTGCA
196 CAGATACTCCTAACTAGATGTGTATGAATGATATTTGCA
36472799 TTAATGCAGA
Statistics
Matches: 217, Mismatches: 17, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
262 217 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.33
Consensus pattern (262 bp):
AATCTGATCCACTGCAACTTTAGGGAGATAAGATTCACCACGATGACTTCAATCCGTCCCACTGC
AACGTCAGGGGTATAGGATTTGTGGTTTCACTAATCTGTTACACCATTCTCTAGGGAACATGACC
TGTAGAATCCATTTCATAGGCCTATATTTATGCCAAACGATTAGGATGTTATGATCAGAATGAAT
CAGATACTCCTAACTAGATGTGTATGAATGATATTTGCAACTTTAGGGAGATAAGATTTATGGCT
TT
Found at i:36484216 original size:41 final size:41
Alignment explanation
Indices: 36484182--36484287 Score: 167
Period size: 41 Copynumber: 2.6 Consensus size: 41
36484172 ACCGGCTTTT
*
36484182 AGCCTACTAGACTTATAGTCTGAAATATTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATATTTCACCGGCATCA
* *
36484223 AGCCTGCTAGACTTATAGTCCGAAATGTTTCACCGGCATCA
1 AGCCTGCTAGACTTATAGTCTGAAATATTTCACCGGCATCA
* *
36484264 AGCCTGCTAGACATAAAGTCTGAA
1 AGCCTGCTAGACTTATAGTCTGAA
36484288 TCATCTCACT
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
41 59 1.00
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.26
Consensus pattern (41 bp):
AGCCTGCTAGACTTATAGTCTGAAATATTTCACCGGCATCA
Found at i:36485290 original size:2 final size:2
Alignment explanation
Indices: 36485283--36485314 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
36485273 ATTTACATGC
36485283 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36485315 GTTGTTGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36487656 original size:17 final size:18
Alignment explanation
Indices: 36487629--36487667 Score: 62
Period size: 17 Copynumber: 2.2 Consensus size: 18
36487619 TTATATTGAA
36487629 AAAAAATTAAAATAATTT
1 AAAAAATTAAAATAATTT
*
36487647 AAAAAA-TAAAATACTTT
1 AAAAAATTAAAATAATTT
36487664 AAAA
1 AAAA
36487668 TTAACTTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.69, C:0.03, G:0.00, T:0.28
Consensus pattern (18 bp):
AAAAAATTAAAATAATTT
Found at i:36487909 original size:27 final size:27
Alignment explanation
Indices: 36487871--36487939 Score: 129
Period size: 27 Copynumber: 2.6 Consensus size: 27
36487861 AACTTGAGAA
36487871 AATTGAGAGAGTTGAGACTTTAGAAAG
1 AATTGAGAGAGTTGAGACTTTAGAAAG
36487898 AATTGAGAGAGTTGAGACTTTAGAAAG
1 AATTGAGAGAGTTGAGACTTTAGAAAG
*
36487925 AATTTAGAGAGTTGA
1 AATTGAGAGAGTTGA
36487940 ATTTGAGTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
27 41 1.00
ACGTcount: A:0.41, C:0.03, G:0.29, T:0.28
Consensus pattern (27 bp):
AATTGAGAGAGTTGAGACTTTAGAAAG
Found at i:36490658 original size:22 final size:20
Alignment explanation
Indices: 36490633--36490673 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 20
36490623 TTTTTTAAAA
36490633 TTTTAAAAATGAAAAGAATTAG
1 TTTTAAAAAT-AAAA-AATTAG
*
36490655 TTTTTAAAATAAAAAATTA
1 TTTTAAAAATAAAAAATTA
36490674 TTAAAATTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 5 0.28
21 4 0.22
22 9 0.50
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
TTTTAAAAATAAAAAATTAG
Found at i:36493815 original size:26 final size:27
Alignment explanation
Indices: 36493778--36493838 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
36493768 GGTCCCTATA
36493778 TTTTTT-CTTTT-TGTGCAATTTAAAAT
1 TTTTTTCCTTTTATGT-CAATTTAAAAT
* **
36493804 TTTTTTCCTTTTATGTTAATTTAACTT
1 TTTTTTCCTTTTATGTCAATTTAAAAT
36493831 TTTTTTCC
1 TTTTTTCC
36493839 ATTCTCTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
26 6 0.20
27 21 0.70
28 3 0.10
ACGTcount: A:0.18, C:0.11, G:0.05, T:0.66
Consensus pattern (27 bp):
TTTTTTCCTTTTATGTCAATTTAAAAT
Found at i:36494095 original size:2 final size:2
Alignment explanation
Indices: 36494088--36494118 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
36494078 TCCATTTCTT
36494088 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
36494119 TTACACTTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:36496323 original size:42 final size:42
Alignment explanation
Indices: 36496255--36496447 Score: 194
Period size: 42 Copynumber: 4.6 Consensus size: 42
36496245 AGGCTGTACA
* * * *
36496255 GAAGCACATAAGTA-CTAAA-TAGAAACCCGTAAGGGTTGAACG
1 GAAGCTCATAAG-AGCTAAACT-GAAACCCATAAGGGTTAAACT
* *
36496297 GAAGCTCATAAGAGCTGAAC-GAAAACCCATAAGGGTTAATCT
1 GAAGCTCATAAGAGCTAAACTG-AAACCCATAAGGGTTAAACT
* * * *
36496339 GAAGTTCAGAAGAGCTAAACTGAAACCCATTAGGATTAAACT
1 GAAGCTCATAAGAGCTAAACTGAAACCCATAAGGGTTAAACT
* * *
36496381 GAAGCTCAAAAGAGCTGAACTGAAACCCAGAAGGGTTAAACT
1 GAAGCTCATAAGAGCTAAACTGAAACCCATAAGGGTTAAACT
* * *
36496423 GAAACTCATAAAAGCTAAACGGAAA
1 GAAGCTCATAAGAGCTAAACTGAAA
36496448 GCAAACACGA
Statistics
Matches: 124, Mismatches: 23, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
41 2 0.02
42 121 0.98
43 1 0.01
ACGTcount: A:0.44, C:0.18, G:0.21, T:0.17
Consensus pattern (42 bp):
GAAGCTCATAAGAGCTAAACTGAAACCCATAAGGGTTAAACT
Found at i:36496422 original size:21 final size:21
Alignment explanation
Indices: 36496319--36496427 Score: 74
Period size: 21 Copynumber: 5.2 Consensus size: 21
36496309 AGCTGAACGA
* *
36496319 AAACCCATAAGGGTTAATCTG
1 AAACCCAGAAGGGTTAAACTG
*** * *
36496340 AAGTTCAGAAGAGCTAAACTG
1 AAACCCAGAAGGGTTAAACTG
** *
36496361 AAACCCATTAGGATTAAACTG
1 AAACCCAGAAGGGTTAAACTG
* * * * * *
36496382 AAGCTCAAAAGAGCTGAACTG
1 AAACCCAGAAGGGTTAAACTG
36496403 AAACCCAGAAGGGTTAAACTG
1 AAACCCAGAAGGGTTAAACTG
36496424 AAAC
1 AAAC
36496428 TCATAAAAGC
Statistics
Matches: 59, Mismatches: 29, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
21 59 1.00
ACGTcount: A:0.43, C:0.18, G:0.20, T:0.18
Consensus pattern (21 bp):
AAACCCAGAAGGGTTAAACTG
Found at i:36496441 original size:21 final size:20
Alignment explanation
Indices: 36496375--36496447 Score: 56
Period size: 21 Copynumber: 3.5 Consensus size: 20
36496365 CCATTAGGAT
*
36496375 TAAACTGAAGCTCAAAAGAGC
1 TAAACTGAAACTCAAAA-AGC
* * ** *
36496396 TGAACTGAAACCCAGAAGGGT
1 TAAACTGAAACTCA-AAAAGC
36496417 TAAACTGAAACTCATAAAAGC
1 TAAACTGAAACTCA-AAAAGC
*
36496438 TAAACGGAAA
1 TAAACTGAAA
36496448 GCAAACACGA
Statistics
Matches: 38, Mismatches: 13, Indels: 2
0.72 0.25 0.04
Matches are distributed among these distances:
21 36 0.95
22 2 0.05
ACGTcount: A:0.48, C:0.18, G:0.19, T:0.15
Consensus pattern (20 bp):
TAAACTGAAACTCAAAAAGC
Found at i:36513103 original size:40 final size:40
Alignment explanation
Indices: 36513058--36513136 Score: 131
Period size: 40 Copynumber: 2.0 Consensus size: 40
36513048 TATTCCTCTT
*
36513058 CAAACCATCCAAAATAGAGTTAAAGTCAATAGCAGCAATA
1 CAAACCATCCAAAATAGAGTTAAAGTCAATAGCAACAATA
* *
36513098 CAAACCATCCAAAATGGAGTTAAAGTCACTAGCAACAAT
1 CAAACCATCCAAAATAGAGTTAAAGTCAATAGCAACAAT
36513137 CCATGGCTCA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.48, C:0.22, G:0.13, T:0.18
Consensus pattern (40 bp):
CAAACCATCCAAAATAGAGTTAAAGTCAATAGCAACAATA
Found at i:36514174 original size:40 final size:40
Alignment explanation
Indices: 36514119--36514197 Score: 149
Period size: 40 Copynumber: 2.0 Consensus size: 40
36514109 TGAGCTATGG
36514119 ATTGTTGCTAGTGACTTTAACTCCATTTTGGATGGTTTGT
1 ATTGTTGCTAGTGACTTTAACTCCATTTTGGATGGTTTGT
*
36514159 ATTGTTGCTAGTGACTTTAACTCTATTTTGGATGGTTTG
1 ATTGTTGCTAGTGACTTTAACTCCATTTTGGATGGTTTG
36514198 AAGAGGAATA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.18, C:0.11, G:0.23, T:0.48
Consensus pattern (40 bp):
ATTGTTGCTAGTGACTTTAACTCCATTTTGGATGGTTTGT
Found at i:36514758 original size:114 final size:115
Alignment explanation
Indices: 36514593--36514812 Score: 361
Period size: 114 Copynumber: 1.9 Consensus size: 115
36514583 CGGTGTTTTT
* *
36514593 GATAAAGCGCCACTAATTATTAATATATAACGGCGTTTTTAGAAAAGCGCCGCAAAAAAATTAAT
1 GATAAAGCGCCACTAATTATCAATATATAACGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAAT
* *
36514658 CACAACGCCACCGT-TTTGGTTGAGCTTTAGTGGTATTAGCAGCGTTTGG
66 CACAACGCCACCGTATTAGGTTGAGCTTTAGTGGCATTAGCAGCGTTTGG
* * *
36514707 GATAAAGCGCCACTAATTCTCGATATATAGCGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAAT
1 GATAAAGCGCCACTAATTATCAATATATAACGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAAT
*
36514772 CACAACGCCATCGTATTAGGTTGAGCTTTAGTGGCATTAGC
66 CACAACGCCACCGTATTAGGTTGAGCTTTAGTGGCATTAGC
36514813 TACGCTTTTT
Statistics
Matches: 97, Mismatches: 8, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
114 73 0.75
115 24 0.25
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (115 bp):
GATAAAGCGCCACTAATTATCAATATATAACGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAAT
CACAACGCCACCGTATTAGGTTGAGCTTTAGTGGCATTAGCAGCGTTTGG
Found at i:36514851 original size:115 final size:114
Alignment explanation
Indices: 36514596--36514851 Score: 345
Period size: 114 Copynumber: 2.2 Consensus size: 114
36514586 TGTTTTTGAT
* ** * *
36514596 AAAGCGCCACTAATTATTAATATATAACGGCGTTTTTAGAAAAGCGCCGCAAAAAAATTAATCAC
1 AAAGCGCCACTAATTCTCGATATATAGCGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAATCAC
* * *
36514661 AACGCCACCGTTTTGGTTGAGCTTTAGTGGTATTAGCAGCGTTTGGGAT
66 AACGCCACCGTTTAGGTTGAGCTTTAGTGGCATTAGCAGCGTTTGGGAA
36514710 AAAGCGCCACTAATTCTCGATATATAGCGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAATCAC
1 AAAGCGCCACTAATTCTCGATATATAGCGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAATCAC
* **
36514775 AACGCCATCGTATTAGGTTGAGCTTTAGTGGCATTAGCTA-CGCTTT-TTAA
66 AACGCCACCGT-TTAGGTTGAGCTTTAGTGGCATTAGC-AGCG-TTTGGGAA
* * *
36514825 AAATCGCCGCTAATTCTCGATCTATAG
1 AAAGCGCCACTAATTCTCGATATATAG
36514852 TTGCGTTTTC
Statistics
Matches: 125, Mismatches: 14, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
114 70 0.56
115 51 0.41
116 4 0.03
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (114 bp):
AAAGCGCCACTAATTCTCGATATATAGCGGCATTTTTAGAAAAGCGCCGCAAAAAAATTAATCAC
AACGCCACCGTTTAGGTTGAGCTTTAGTGGCATTAGCAGCGTTTGGGAA
Found at i:36515046 original size:139 final size:140
Alignment explanation
Indices: 36514795--36515073 Score: 353
Period size: 139 Copynumber: 2.0 Consensus size: 140
36514785 TATTAGGTTG
* * * * * ***
36514795 AGCTTTAGTGGCATTAGCTACGCTTTTTAAAAATCGCCGCTAATTCTCGATCTATAGTTGCGTTT
1 AGCTTTAGTGGCATTAGCGACGCTTTTTAAAAAGCGCAGCTAATGCTCGATCTACAACGGCGTTT
* * * * *
36514860 TCGACAAAGCGCCACTAATTCTATATATATAGCAGTGTTTTTAGAAAAGCGCTGCAAAAAAATTA
66 GCGACAAAGCGCCACCAATTCTAGATATATAGCAGCGTTTTTAGAAAAGCGCCGCAAAAAAATTA
36514925 ATCACAACGC
131 ATCACAACGC
** *
36514935 AGCTTTAGTGGCATTAGCGGTG-TTTTTTAAAAGCGCAGCTAATGCTCGATCTACAACGGCGTTT
1 AGCTTTAGTGGCATTAGCGACGCTTTTTAAAAAGCGCAGCTAATGCTCGATCTACAACGGCGTTT
* * * * *
36514999 GGGACAAAGCGCCACCAATTCTCGATATATAGCGGCGTTTTTAGAAAAGTGCCGTAAAAAAATTA
66 GCGACAAAGCGCCACCAATTCTAGATATATAGCAGCGTTTTTAGAAAAGCGCCGCAAAAAAATTA
*
36515064 ATCTCAACGC
131 ATCACAACGC
36515074 TATCGTTTTA
Statistics
Matches: 117, Mismatches: 22, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
139 98 0.84
140 19 0.16
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.29
Consensus pattern (140 bp):
AGCTTTAGTGGCATTAGCGACGCTTTTTAAAAAGCGCAGCTAATGCTCGATCTACAACGGCGTTT
GCGACAAAGCGCCACCAATTCTAGATATATAGCAGCGTTTTTAGAAAAGCGCCGCAAAAAAATTA
ATCACAACGC
Found at i:36515293 original size:28 final size:29
Alignment explanation
Indices: 36515240--36515300 Score: 72
Period size: 28 Copynumber: 2.1 Consensus size: 29
36515230 TTGGGATTAG
36515240 AGTTTTGAGTTTAGGATTTACAA-TTTAT
1 AGTTTTGAGTTTAGGATTTACAATTTTAT
* **
36515268 AGTTTGTG-GTTTAGGGTTTATTATTTTAT
1 AGTTT-TGAGTTTAGGATTTACAATTTTAT
36515297 AGTT
1 AGTT
36515301 AAGGTCTTAG
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
28 17 0.61
29 11 0.39
ACGTcount: A:0.23, C:0.02, G:0.21, T:0.54
Consensus pattern (29 bp):
AGTTTTGAGTTTAGGATTTACAATTTTAT
Found at i:36515462 original size:7 final size:7
Alignment explanation
Indices: 36515452--36515660 Score: 71
Period size: 7 Copynumber: 29.7 Consensus size: 7
36515442 GTAGTATATA
36515452 TTTAGGG
1 TTTAGGG
*
36515459 TTTAGGA
1 TTTAGGG
* *
36515466 TGTA-AG
1 TTTAGGG
*
36515472 TTTATGG
1 TTTAGGG
*
36515479 TTTGGGG
1 TTTAGGG
**
36515486 TTTAAAG
1 TTTAGGG
*
36515493 TTTAAGG
1 TTTAGGG
* *
36515500 TTTATGA
1 TTTAGGG
*
36515507 TTTAGTG
1 TTTAGGG
* *
36515514 TTAAGAG
1 TTTAGGG
*
36515521 TTTAGTG
1 TTTAGGG
*
36515528 TTTACGG
1 TTTAGGG
*
36515535 TTTAAGG
1 TTTAGGG
*
36515542 TGTA-GG
1 TTTAGGG
*
36515548 TTTATGG
1 TTTAGGG
**
36515555 TTTAGTT
1 TTTAGGG
*
36515562 TTTAGTG
1 TTTAGGG
36515569 TTTAGGG
1 TTTAGGG
* *
36515576 TTAAGAG
1 TTTAGGG
* *
36515583 CTTAGGA
1 TTTAGGG
*
36515590 TTTAAAGG
1 TTT-AGGG
*
36515598 TTATAGGC
1 TT-TAGGG
* *
36515606 CTAAGGG
1 TTTAGGG
* * *
36515613 CTTATGA
1 TTTAGGG
36515620 TTTAGGG
1 TTTAGGG
36515627 TTTAGGG
1 TTTAGGG
*
36515634 TTTTATGG
1 -TTTAGGG
36515642 TTTAGGG
1 TTTAGGG
*
36515649 TTTAGTG
1 TTTAGGG
36515656 TTTAG
1 TTTAG
36515661 CTAAAAACAT
Statistics
Matches: 143, Mismatches: 54, Indels: 10
0.69 0.26 0.05
Matches are distributed among these distances:
6 8 0.06
7 121 0.85
8 13 0.09
9 1 0.01
ACGTcount: A:0.22, C:0.02, G:0.31, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:36515643 original size:15 final size:15
Alignment explanation
Indices: 36515620--36515660 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
36515610 GGGCTTATGA
36515620 TTTAGGGTTTAGGGT
1 TTTAGGGTTTAGGGT
*
36515635 TTTATGGTTTAGGG-
1 TTTAGGGTTTAGGGT
*
36515649 TTTAGTGTTTAG
1 TTTAGGGTTTAG
36515661 CTAAAAACAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.15, C:0.00, G:0.34, T:0.51
Consensus pattern (15 bp):
TTTAGGGTTTAGGGT
Found at i:36515645 original size:22 final size:22
Alignment explanation
Indices: 36515614--36515658 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
36515604 GCCTAAGGGC
36515614 TTATGATTTAGGGTTTAGGGTT
1 TTATGATTTAGGGTTTAGGGTT
* *
36515636 TTATGGTTTAGGGTTTAGTGTT
1 TTATGATTTAGGGTTTAGGGTT
36515658 T
1 T
36515659 AGCTAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.16, C:0.00, G:0.31, T:0.53
Consensus pattern (22 bp):
TTATGATTTAGGGTTTAGGGTT
Found at i:36517942 original size:43 final size:45
Alignment explanation
Indices: 36517855--36517964 Score: 143
Period size: 43 Copynumber: 2.5 Consensus size: 45
36517845 GTTTAATCGG
36517855 TTTAATGTGAATAAATTATCGAATTGAATAAATTATCGATTTTTGA
1 TTTAAT-TGAATAAATTATCGAATTGAATAAATTATCGATTTTTGA
* * * *
36517901 TTTAATTGAATAAATTAT-G-TTTGATTAATTTATCGTTTTTTGA
1 TTTAATTGAATAAATTATCGAATTGAATAAATTATCGATTTTTGA
* *
36517944 TTTAATTGAAAAAATCATCGA
1 TTTAATTGAATAAATTATCGA
36517965 TTTTATATTT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
43 36 0.64
44 2 0.04
45 12 0.21
46 6 0.11
ACGTcount: A:0.37, C:0.05, G:0.12, T:0.46
Consensus pattern (45 bp):
TTTAATTGAATAAATTATCGAATTGAATAAATTATCGATTTTTGA
Found at i:36518234 original size:8 final size:9
Alignment explanation
Indices: 36518212--36518241 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
36518202 AAAAATTATT
36518212 ATAACTTAC
1 ATAACTTAC
36518221 ATAACTTA-
1 ATAACTTAC
36518229 ATAACTTAC
1 ATAACTTAC
36518238 ATAA
1 ATAA
36518242 TTTATTAGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAACTTAC
Found at i:36518361 original size:19 final size:21
Alignment explanation
Indices: 36518337--36518382 Score: 62
Period size: 19 Copynumber: 2.3 Consensus size: 21
36518327 CTTATTTTAA
36518337 TATATTTTAAATTA-A-AACT
1 TATATTTTAAATTACATAACT
*
36518356 TATATTTTGAATTACATAACT
1 TATATTTTAAATTACATAACT
36518377 TA-ATTT
1 TATATTT
36518383 CTTCCCCGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
19 13 0.54
20 5 0.21
21 6 0.25
ACGTcount: A:0.41, C:0.07, G:0.02, T:0.50
Consensus pattern (21 bp):
TATATTTTAAATTACATAACT
Found at i:36518562 original size:8 final size:9
Alignment explanation
Indices: 36518531--36518750 Score: 163
Period size: 9 Copynumber: 24.9 Consensus size: 9
36518521 AAATTAATAT
*
36518531 ATAATTTAC
1 ATAACTTAC
36518540 ATAACTTAC
1 ATAACTTAC
36518549 ATAACTTA-
1 ATAACTTAC
36518557 ATAACTTAC
1 ATAACTTAC
36518566 ATAA--TAC
1 ATAACTTAC
* *
36518573 ATAAATTAATAT
1 AT-AACT--TAC
* *
36518585 ATAATTTAT
1 ATAACTTAC
* * *
36518594 GTATCTCAC
1 ATAACTTAC
36518603 ATAACTTAC
1 ATAACTTAC
36518612 ATAACTTA-
1 ATAACTTAC
36518620 ATAACTTAC
1 ATAACTTAC
36518629 ATAA--TAC
1 ATAACTTAC
* *
36518636 ATAA-ATAT
1 ATAACTTAC
* *
36518644 ATATCATATC
1 ATAACTTA-C
*
36518654 ACAACTTAC
1 ATAACTTAC
36518663 ATAACTTAC
1 ATAACTTAC
*
36518672 ATAATTTA-
1 ATAACTTAC
36518680 ATAACTTAC
1 ATAACTTAC
36518689 ATAACTTA-
1 ATAACTTAC
36518697 ATAACTTAC
1 ATAACTTAC
*
36518706 ATAATTTATAC
1 ATAA-CT-TAC
*
36518717 ATAATTTA-
1 ATAACTTAC
*
36518725 ATAACTTTC
1 ATAACTTAC
36518734 ATAACTTAC
1 ATAACTTAC
36518743 ATAACTTA
1 ATAACTTA
36518751 ATTATACTTG
Statistics
Matches: 173, Mismatches: 23, Indels: 30
0.77 0.10 0.13
Matches are distributed among these distances:
7 12 0.07
8 44 0.25
9 94 0.54
10 8 0.05
11 11 0.06
12 4 0.02
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (9 bp):
ATAACTTAC
Found at i:36518562 original size:17 final size:18
Alignment explanation
Indices: 36518531--36518750 Score: 163
Period size: 17 Copynumber: 12.4 Consensus size: 18
36518521 AAATTAATAT
*
36518531 ATAATTTACATAACTTAC
1 ATAACTTACATAACTTAC
36518549 ATAACTTA-ATAACTTAC
1 ATAACTTACATAACTTAC
* *
36518566 ATAA--TACATAAATTAATAT
1 ATAACTTACAT-AACT--TAC
* ** * *
36518585 ATAATTTATGTATCTCAC
1 ATAACTTACATAACTTAC
36518603 ATAACTTACATAACTTA-
1 ATAACTTACATAACTTAC
36518620 ATAACTTACATAA--TAC
1 ATAACTTACATAACTTAC
* * * *
36518636 ATAA-ATATATATCATATC
1 ATAACTTACATAACTTA-C
*
36518654 ACAACTTACATAACTTAC
1 ATAACTTACATAACTTAC
*
36518672 ATAATTTA-ATAACTTAC
1 ATAACTTACATAACTTAC
36518689 ATAACTTA-ATAACTTAC
1 ATAACTTACATAACTTAC
* *
36518706 ATAATTTATACATAATTTA-
1 ATAA-CT-TACATAACTTAC
*
36518725 ATAACTTTCATAACTTAC
1 ATAACTTACATAACTTAC
36518743 ATAACTTA
1 ATAACTTA
36518751 ATTATACTTG
Statistics
Matches: 156, Mismatches: 31, Indels: 30
0.72 0.14 0.14
Matches are distributed among these distances:
15 9 0.06
16 6 0.04
17 69 0.44
18 40 0.26
19 20 0.13
20 9 0.06
21 3 0.02
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (18 bp):
ATAACTTACATAACTTAC
Found at i:36518581 original size:24 final size:25
Alignment explanation
Indices: 36518531--36518583 Score: 72
Period size: 24 Copynumber: 2.1 Consensus size: 25
36518521 AAATTAATAT
* *
36518531 ATAATTTACATAACTTACATAACTTA
1 ATAACTTACATAAC-TACATAAATTA
36518557 ATAACTTACATAA-TACATAAATTA
1 ATAACTTACATAACTACATAAATTA
36518581 ATA
1 ATA
36518584 TATAATTTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
24 13 0.52
26 12 0.48
ACGTcount: A:0.51, C:0.13, G:0.00, T:0.36
Consensus pattern (25 bp):
ATAACTTACATAACTACATAAATTA
Found at i:36518637 original size:63 final size:60
Alignment explanation
Indices: 36518538--36518692 Score: 213
Period size: 63 Copynumber: 2.5 Consensus size: 60
36518528 TATATAATTT
** *
36518538 ACATAACTTACATAACTTAATAACTTACATAATACATAAATTAATATATAATTTAT-GTATCTC
1 ACATAACTTACATAACTTAATAACTTACATAATACATAAA-T-ATATATAA--TATCACAACTC
* *
36518601 ACATAACTTACATAACTTAATAACTTACATAATACATAAATATATATCATATCACAACTT
1 ACATAACTTACATAACTTAATAACTTACATAATACATAAATATATATAATATCACAACTC
*
36518661 ACATAACTTACATAATTTAATAACTTACATAA
1 ACATAACTTACATAACTTAATAACTTACATAA
36518693 CTTAATAACT
Statistics
Matches: 85, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
59 3 0.04
60 34 0.40
61 7 0.08
62 1 0.01
63 40 0.47
ACGTcount: A:0.48, C:0.16, G:0.01, T:0.35
Consensus pattern (60 bp):
ACATAACTTACATAACTTAATAACTTACATAATACATAAATATATATAATATCACAACTC
Found at i:36527526 original size:43 final size:43
Alignment explanation
Indices: 36527462--36527574 Score: 129
Period size: 43 Copynumber: 2.6 Consensus size: 43
36527452 ATAAAAAGCA
* * *
36527462 CCGCCAAAGAACATGACCTTTAGCGGCGAATGCT-ATAAAAGTG
1 CCGCTAAAGATCATGATCTTTAGCGGCGAATG-TGATAAAAGTG
* * ** *
36527505 TCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGGTAAAAGTG
1 CCGCTAAAGATCATGATCTTTAGCGGCGAATGTGATAAAAGTG
*
36527548 CCGCTAAAGATCATGTTCTTTAGCGGC
1 CCGCTAAAGATCATGATCTTTAGCGGC
36527575 ATTTATGTGA
Statistics
Matches: 58, Mismatches: 11, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 1 0.02
43 57 0.98
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
CCGCTAAAGATCATGATCTTTAGCGGCGAATGTGATAAAAGTG
Found at i:36528290 original size:45 final size:47
Alignment explanation
Indices: 36528236--36528347 Score: 129
Period size: 49 Copynumber: 2.4 Consensus size: 47
36528226 ATCCATATAA
* *
36528236 AACTACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTCAATCT
1 AACTACACTTCTTCTATTTATATTATTAGAATAAGGTATTTCAATCT
* * * *
36528281 TATTACACTTCATCTATTTGATGTTGATTAGAATAAGGTATTTCAATCT
1 AACTACACTTCTTCTATTT-ATATT-ATTAGAATAAGGTATTTCAATCT
*
36528330 AACTACACTCCTTCTATT
1 AACTACACTTCTTCTATT
36528348 AGAATATGGT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
45 15 0.28
47 3 0.06
49 35 0.66
ACGTcount: A:0.29, C:0.16, G:0.08, T:0.46
Consensus pattern (47 bp):
AACTACACTTCTTCTATTTATATTATTAGAATAAGGTATTTCAATCT
Found at i:36538368 original size:14 final size:14
Alignment explanation
Indices: 36538349--36538391 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
36538339 TTTATATAAA
36538349 ATTAAAATAAAAAT
1 ATTAAAATAAAAAT
*
36538363 ATTAAATTAAAAAT
1 ATTAAAATAAAAAT
* **
36538377 TTTAGCATAAAAAT
1 ATTAAAATAAAAAT
36538391 A
1 A
36538392 AATTAAAACC
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (14 bp):
ATTAAAATAAAAAT
Found at i:36545408 original size:30 final size:29
Alignment explanation
Indices: 36545372--36545456 Score: 116
Period size: 30 Copynumber: 2.8 Consensus size: 29
36545362 ATCCGTATTT
*
36545372 ATGGAAAGTCAAATATATGGTTATCAAATA
1 ATGGAAAGTCAAAGATATGG-TATCAAATA
36545402 ATGGAAAGTCAAAGATATGAGTATCAAATA
1 ATGGAAAGTCAAAGATATG-GTATCAAATA
* *
36545432 TTGGAAAATCAAAGATATGGGTATC
1 ATGGAAAGTCAAAGATAT-GGTATC
36545457 GAGATATTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
30 48 0.96
31 2 0.04
ACGTcount: A:0.46, C:0.07, G:0.20, T:0.27
Consensus pattern (29 bp):
ATGGAAAGTCAAAGATATGGTATCAAATA
Found at i:36549830 original size:15 final size:15
Alignment explanation
Indices: 36549810--36549893 Score: 73
Period size: 15 Copynumber: 5.5 Consensus size: 15
36549800 TTATGGAAAG
*
36549810 TCAAATATATGGTTA
1 TCAAATATATGGATA
*
36549825 TCAAATA-ATGGAAA
1 TCAAATATATGGATA
*
36549839 TTCAAATATATGGGTA
1 -TCAAATATATGGATA
*
36549855 TCAAATAT-TGGAAAA
1 TCAAATATATGG-ATA
* *
36549870 TCAAAGATATGGGTA
1 TCAAATATATGGATA
36549885 TCAAGATAT
1 TCAA-ATAT
36549894 TGGCATAAGA
Statistics
Matches: 54, Mismatches: 10, Indels: 9
0.74 0.14 0.12
Matches are distributed among these distances:
14 8 0.15
15 35 0.65
16 11 0.20
ACGTcount: A:0.45, C:0.07, G:0.17, T:0.31
Consensus pattern (15 bp):
TCAAATATATGGATA
Found at i:36549838 original size:30 final size:30
Alignment explanation
Indices: 36549802--36549888 Score: 129
Period size: 30 Copynumber: 2.9 Consensus size: 30
36549792 ATCCGTATTT
* *
36549802 ATGGAAAGTCAAATATATGGTTATCAAATA
1 ATGGAAAATCAAATATATGGGTATCAAATA
*
36549832 ATGGAAATTCAAATATATGGGTATCAAATA
1 ATGGAAAATCAAATATATGGGTATCAAATA
* *
36549862 TTGGAAAATCAAAGATATGGGTATCAA
1 ATGGAAAATCAAATATATGGGTATCAA
36549889 GATATTGGCA
Statistics
Matches: 52, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.46, C:0.07, G:0.18, T:0.29
Consensus pattern (30 bp):
ATGGAAAATCAAATATATGGGTATCAAATA
Found at i:36552985 original size:19 final size:19
Alignment explanation
Indices: 36552961--36552999 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
36552951 GTATTACAAG
36552961 TACTCATGAAAAATAGAAT
1 TACTCATGAAAAATAGAAT
*
36552980 TACTCATGGAAAATAGAAT
1 TACTCATGAAAAATAGAAT
36552999 T
1 T
36553000 TATTGAACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (19 bp):
TACTCATGAAAAATAGAAT
Found at i:36569726 original size:43 final size:43
Alignment explanation
Indices: 36569623--36569726 Score: 115
Period size: 43 Copynumber: 2.4 Consensus size: 43
36569613 CAATTTATTC
** *
36569623 GATGATGCACTATGCATGTCAGTATAATTGTTTTGGTTCGTCT
1 GATGATGCACTATGTGTGTCAGTATAATTGCTTTGGTTCGTCT
* *
36569666 GATGATGCACCT-CGTGTGTTAGTATAATTGCTTTGGCTT-G-CTT
1 GATGATGCA-CTATGTGTGTCAGTATAATTGCTTTGG-TTCGTC-T
36569709 GATGATGCACTATGTGTG
1 GATGATGCACTATGTGTG
36569727 CCAATAACTT
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 3 0.06
43 44 0.86
44 4 0.08
ACGTcount: A:0.19, C:0.14, G:0.26, T:0.40
Consensus pattern (43 bp):
GATGATGCACTATGTGTGTCAGTATAATTGCTTTGGTTCGTCT
Found at i:36577274 original size:53 final size:53
Alignment explanation
Indices: 36577215--36577321 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
36577205 TCACACCAAA
36577215 TATGCAGTGAACTGCTAATCGGATATAAATACACCAATTCCACCTACCACACC
1 TATGCAGTGAACTGCTAATCGGATATAAATACACCAATTCCACCTACCACACC
36577268 TATGCAGTGAACTGCTAATCGGATATAAATACACCAATTCCACCTACCACACC
1 TATGCAGTGAACTGCTAATCGGATATAAATACACCAATTCCACCTACCACACC
36577321 T
1 T
36577322 GAATACGCTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.36, C:0.30, G:0.11, T:0.23
Consensus pattern (53 bp):
TATGCAGTGAACTGCTAATCGGATATAAATACACCAATTCCACCTACCACACC
Found at i:36585991 original size:15 final size:17
Alignment explanation
Indices: 36585966--36585999 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
36585956 TGGTTTCTCT
36585966 TTTGTCTTGA-GTATTC
1 TTTGTCTTGAGGTATTC
36585982 TTTG-CTTGAGGTATTC
1 TTTGTCTTGAGGTATTC
36585998 TT
1 TT
36586000 CACATGTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.12, C:0.12, G:0.21, T:0.56
Consensus pattern (17 bp):
TTTGTCTTGAGGTATTC
Found at i:36591254 original size:6 final size:6
Alignment explanation
Indices: 36591216--36591262 Score: 51
Period size: 6 Copynumber: 7.7 Consensus size: 6
36591206 ATGCTGATCT
* *
36591216 ATACTA TATACTA TATACT- ATACTA ATATTA ATACTA ATACTG ATAC
1 ATACTA -ATACTA -ATACTA ATACTA ATACTA ATACTA ATACTA ATAC
36591263 CATACAGAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
5 5 0.14
6 19 0.53
7 12 0.33
ACGTcount: A:0.45, C:0.15, G:0.02, T:0.38
Consensus pattern (6 bp):
ATACTA
Found at i:36596200 original size:40 final size:40
Alignment explanation
Indices: 36596155--36596241 Score: 95
Period size: 40 Copynumber: 2.2 Consensus size: 40
36596145 GCTATGTTTA
36596155 GCACTTAATATGAAATTC-GAGATAGCTTCAGCTATTTATG
1 GCACTTAATATGAAATTCGGA-ATAGCTTCAGCTATTTATG
* * ** * *
36596195 GCACTTAGTGTGCGATTTGGAATAGCTTCGGCTATTTATG
1 GCACTTAATATGAAATTCGGAATAGCTTCAGCTATTTATG
*
36596235 ACACTTA
1 GCACTTA
36596242 GTGTGCGAGA
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
40 37 0.95
41 2 0.05
ACGTcount: A:0.28, C:0.16, G:0.21, T:0.36
Consensus pattern (40 bp):
GCACTTAATATGAAATTCGGAATAGCTTCAGCTATTTATG
Found at i:36596281 original size:41 final size:40
Alignment explanation
Indices: 36596173--36596311 Score: 172
Period size: 41 Copynumber: 3.4 Consensus size: 40
36596163 TATGAAATTC
**
36596173 GAGATAGCTTCAGCTATTTATGGCACTTAGTGTGCGATTT
1 GAGATAGCTTCAGCTATTTATGGCACTTAGTGTGCGAGAT
* *
36596213 G-GAATAGCTTCGGCTATTTATGACACTTAGTGTGCGAGACT
1 GAG-ATAGCTTCAGCTATTTATGGCACTTAGTGTGCGAGA-T
* * *
36596254 GAGATAGCTTCGGCTATGTAAGGCACTTAGTGTGCGAGAT
1 GAGATAGCTTCAGCTATTTATGGCACTTAGTGTGCGAGAT
*
36596294 TATGATAGCTTCAGCTAT
1 GA-GATAGCTTCAGCTAT
36596312 ACGATGGCAA
Statistics
Matches: 86, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
39 1 0.01
40 35 0.41
41 49 0.57
42 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.27, T:0.33
Consensus pattern (40 bp):
GAGATAGCTTCAGCTATTTATGGCACTTAGTGTGCGAGAT
Found at i:36596625 original size:42 final size:42
Alignment explanation
Indices: 36596568--36596667 Score: 164
Period size: 42 Copynumber: 2.4 Consensus size: 42
36596558 CTATATGAAC
* *
36596568 GGCACTAAGTGTGCGAAATTAAAATAATGATGTTGGATAATG
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGATGGATAACG
* *
36596610 GGCACTAAGTGTGCGAAATTAAAATGATGATGATGTATAACG
1 GGCACTAAGTGTGCGAAATTAAAATAATGATGATGGATAACG
36596652 GGCACTAAGTGTGCGA
1 GGCACTAAGTGTGCGA
36596668 TACCGAGAGC
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 54 1.00
ACGTcount: A:0.36, C:0.10, G:0.28, T:0.26
Consensus pattern (42 bp):
GGCACTAAGTGTGCGAAATTAAAATAATGATGATGGATAACG
Found at i:36598779 original size:11 final size:11
Alignment explanation
Indices: 36598763--36598801 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
36598753 GAAAATAGAG
36598763 CAAAAGCAACT
1 CAAAAGCAACT
36598774 CAAAAGC-A--
1 CAAAAGCAACT
36598782 CAAAAGCAACT
1 CAAAAGCAACT
36598793 CAAAAGCAA
1 CAAAAGCAA
36598802 AAGAGTAATG
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
8 7 0.28
9 1 0.04
10 1 0.04
11 16 0.64
ACGTcount: A:0.59, C:0.26, G:0.10, T:0.05
Consensus pattern (11 bp):
CAAAAGCAACT
Found at i:36598787 original size:19 final size:19
Alignment explanation
Indices: 36598763--36598800 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
36598753 GAAAATAGAG
36598763 CAAAAGCAACTCAAAAGCA
1 CAAAAGCAACTCAAAAGCA
36598782 CAAAAGCAACTCAAAAGCA
1 CAAAAGCAACTCAAAAGCA
36598801 AAAGAGTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.58, C:0.26, G:0.11, T:0.05
Consensus pattern (19 bp):
CAAAAGCAACTCAAAAGCA
Found at i:36599394 original size:37 final size:38
Alignment explanation
Indices: 36599345--36599530 Score: 98
Period size: 37 Copynumber: 4.9 Consensus size: 38
36599335 TTAAATAAAT
* *
36599345 TATAATT-TATAACACTATATATTTAAAAAATTAAAAA
1 TATAATTCAATAACACTATAAATTTAAAAAATTAAAAA
* * *
36599382 T-TAATTCAATAACATTATAAAATATTAAAATATTAAACA
1 TATAATTCAATAACACTAT-AAAT-TTAAAAAATTAAAAA
* *** * * ** * * * *
36599421 TCTATATTTTTTTATA--ATACCTTTATAAGATTCAAAT
1 TATA-ATTCAATAACACTATAAATTTAAAAAATTAAAAA
*
36599458 TATAATT--ATAACACTATATATTTAAAAAATTAAAAA
1 TATAATTCAATAACACTATAAATTTAAAAAATTAAAAA
* *
36599494 T-TAATTCAATAACATTATAAAATATTAAAATATTAAA
1 TATAATTCAATAACACTAT-AAAT-TTAAAAAATTAAA
36599531 CATCTATATT
Statistics
Matches: 108, Mismatches: 30, Indels: 20
0.68 0.19 0.13
Matches are distributed among these distances:
34 3 0.03
35 5 0.05
36 24 0.22
37 32 0.30
38 8 0.07
39 28 0.26
40 2 0.02
41 6 0.06
ACGTcount: A:0.53, C:0.07, G:0.01, T:0.40
Consensus pattern (38 bp):
TATAATTCAATAACACTATAAATTTAAAAAATTAAAAA
Found at i:36599478 original size:112 final size:113
Alignment explanation
Indices: 36599341--36599566 Score: 445
Period size: 112 Copynumber: 2.0 Consensus size: 113
36599331 ATTCTTAAAT
36599341 AAATTATAATTTATAACACTATATATTTAAAAAATTAAAAATTAATTCAATAACATTATAAAATA
1 AAATTATAATTTATAACACTATATATTTAAAAAATTAAAAATTAATTCAATAACATTATAAAATA
36599406 TTAAAATATTAAACATCTATATTTTTTTATAATACCTTTATAAGATTC
66 TTAAAATATTAAACATCTATATTTTTTTATAATACCTTTATAAGATTC
36599454 AAATTATAA-TTATAACACTATATATTTAAAAAATTAAAAATTAATTCAATAACATTATAAAATA
1 AAATTATAATTTATAACACTATATATTTAAAAAATTAAAAATTAATTCAATAACATTATAAAATA
36599518 TTAAAATATTAAACATCTATATTTTTTTATAATACCTTTATAAGATTC
66 TTAAAATATTAAACATCTATATTTTTTTATAATACCTTTATAAGATTC
36599566 A
1 A
36599567 GTTTTATAGA
Statistics
Matches: 113, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
112 104 0.92
113 9 0.08
ACGTcount: A:0.50, C:0.08, G:0.01, T:0.41
Consensus pattern (113 bp):
AAATTATAATTTATAACACTATATATTTAAAAAATTAAAAATTAATTCAATAACATTATAAAATA
TTAAAATATTAAACATCTATATTTTTTTATAATACCTTTATAAGATTC
Found at i:36607164 original size:21 final size:22
Alignment explanation
Indices: 36607139--36607188 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
36607129 AATATTTTAA
* *
36607139 AACAATAGA-AAAGATTAAAGG
1 AACAACAGATAAAAATTAAAGG
36607160 AACAACAGATTCAAAAATTAAAGG
1 AACAACAGA-T-AAAAATTAAAGG
36607184 AACAA
1 AACAA
36607189 GAAATCAGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 8 0.33
24 16 0.67
ACGTcount: A:0.62, C:0.10, G:0.14, T:0.14
Consensus pattern (22 bp):
AACAACAGATAAAAATTAAAGG
Found at i:36609851 original size:1 final size:1
Alignment explanation
Indices: 36609845--36609872 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
36609835 NNNNTTCACA
36609845 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCC
36609873 AAAAAAAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00
Consensus pattern (1 bp):
C
Found at i:36610441 original size:18 final size:18
Alignment explanation
Indices: 36610420--36610455 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36610410 GATAATGTGG
36610420 CAAAATTCAATAAAAAAT
1 CAAAATTCAATAAAAAAT
* *
36610438 CAAATTTCAATAGAAAAT
1 CAAAATTCAATAAAAAAT
36610456 TCACTCAAAC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.61, C:0.11, G:0.03, T:0.25
Consensus pattern (18 bp):
CAAAATTCAATAAAAAAT
Found at i:36616795 original size:28 final size:28
Alignment explanation
Indices: 36616755--36616866 Score: 224
Period size: 28 Copynumber: 4.0 Consensus size: 28
36616745 TCATATGGAG
36616755 ATACTTTGAATTTTCTCGATGGTATTCT
1 ATACTTTGAATTTTCTCGATGGTATTCT
36616783 ATACTTTGAATTTTCTCGATGGTATTCT
1 ATACTTTGAATTTTCTCGATGGTATTCT
36616811 ATACTTTGAATTTTCTCGATGGTATTCT
1 ATACTTTGAATTTTCTCGATGGTATTCT
36616839 ATACTTTGAATTTTCTCGATGGTATTCT
1 ATACTTTGAATTTTCTCGATGGTATTCT
36616867 GTTAAAAATA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 84 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (28 bp):
ATACTTTGAATTTTCTCGATGGTATTCT
Found at i:36620011 original size:29 final size:27
Alignment explanation
Indices: 36619943--36620011 Score: 66
Period size: 31 Copynumber: 2.4 Consensus size: 27
36619933 TAGAGTTTTA
*
36619943 CATGTATAATTGCACGAAATTAAAATT
1 CATGTATAATTGCACGAAATCAAAATT
* **
36619970 CATATATAAAATTGCATATTAAATCAAAATT
1 CATGTAT--AATTGC--ACGAAATCAAAATT
36620001 CATGTATAATT
1 CATGTATAATT
36620012 TTGAGATTTA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
27 6 0.18
29 10 0.30
31 17 0.52
ACGTcount: A:0.46, C:0.10, G:0.07, T:0.36
Consensus pattern (27 bp):
CATGTATAATTGCACGAAATCAAAATT
Found at i:36623687 original size:13 final size:14
Alignment explanation
Indices: 36623664--36623694 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
36623654 AAATTTTAAA
36623664 ATTTTATTTTTTTT
1 ATTTTATTTTTTTT
36623678 ATTTTA-TTTTTTT
1 ATTTTATTTTTTTT
36623691 ATTT
1 ATTT
36623695 AATAAACTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.65
14 6 0.35
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (14 bp):
ATTTTATTTTTTTT
Found at i:36624268 original size:31 final size:31
Alignment explanation
Indices: 36624204--36624276 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 31
36624194 TTCATGTCAT
*
36624204 TTATTTTATTTAA--AAAATAGATAAATTAA
1 TTATTTTATTAAATCAAAATAGATAAATTAA
*
36624233 TTATTGTATATTAAATCAAAA-AGA-AAATTAG
1 TTATT-T-TATTAAATCAAAATAGATAAATTAA
36624264 TTATTTTATTAAA
1 TTATTTTATTAAA
36624277 AGTATCATCT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
29 12 0.32
30 2 0.05
31 17 0.45
32 3 0.08
33 4 0.11
ACGTcount: A:0.49, C:0.01, G:0.05, T:0.44
Consensus pattern (31 bp):
TTATTTTATTAAATCAAAATAGATAAATTAA
Found at i:36625937 original size:18 final size:18
Alignment explanation
Indices: 36625910--36625945 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
36625900 AAAATGAATA
*
36625910 ATTTCCATTTCCATTTTT
1 ATTTCAATTTCCATTTTT
*
36625928 ATTTCAATTTTCATTTTT
1 ATTTCAATTTCCATTTTT
36625946 TGAAACCTAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.64
Consensus pattern (18 bp):
ATTTCAATTTCCATTTTT
Found at i:36627649 original size:21 final size:21
Alignment explanation
Indices: 36627623--36627681 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
36627613 TTAAAAAGTA
*
36627623 ATTAAGAATTGAGAATTGATG
1 ATTAAGAATTGAGAATTGAGG
* *
36627644 ATTAAGAATTTAGGATTGAGG
1 ATTAAGAATTGAGAATTGAGG
* * *
36627665 AATGAGTATTGAGAATT
1 ATTAAGAATTGAGAATT
36627682 TTTGGTTGAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.41, C:0.00, G:0.25, T:0.34
Consensus pattern (21 bp):
ATTAAGAATTGAGAATTGAGG
Found at i:36632339 original size:34 final size:35
Alignment explanation
Indices: 36632295--36632361 Score: 100
Period size: 34 Copynumber: 1.9 Consensus size: 35
36632285 CAATAAAATA
*
36632295 TTTTCCGTAAAATGATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
* *
36632329 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACGGGAAAATATTTT
36632362 TTGGTGTTTG
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
34 17 0.59
35 12 0.41
ACGTcount: A:0.31, C:0.09, G:0.15, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACGGGAAAATATTTTAC
Found at i:36637466 original size:43 final size:43
Alignment explanation
Indices: 36637418--36637591 Score: 163
Period size: 43 Copynumber: 4.0 Consensus size: 43
36637408 ATTGGACAAG
* * *
36637418 TCGAAACAATTATACTGATACGCGTAGTGCATCATC-AGATAAA
1 TCGAAACAATTATACTGACACACATAGTGCATCATCGA-ATAAA
* *
36637461 TCGAAACAATTATACTGGCACACATAGTGCATCATCGAATATA
1 TCGAAACAATTATACTGACACACATAGTGCATCATCGAATAAA
* * * * * * * *
36637504 TCGAAGCAATTATGCTGACACATACAGTGCATTATTGGATATA
1 TCGAAACAATTATACTGACACACATAGTGCATCATCGAATAAA
* * * *
36637547 -CCAAAGCAATTATACTGGCACACATAATGCATCATCGGATAAA
1 TCGAAA-CAATTATACTGACACACATAGTGCATCATCGAATAAA
36637590 TC
1 TC
36637592 AAAGTATAGC
Statistics
Matches: 105, Mismatches: 23, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
42 3 0.03
43 100 0.95
44 2 0.02
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.26
Consensus pattern (43 bp):
TCGAAACAATTATACTGACACACATAGTGCATCATCGAATAAA
Found at i:36637595 original size:43 final size:43
Alignment explanation
Indices: 36637445--36637595 Score: 164
Period size: 43 Copynumber: 3.5 Consensus size: 43
36637435 ATACGCGTAG
* *
36637445 TGCATCATCAGATAAATCGAAA-CAATTATACTGGCACACATAG
1 TGCATCATCGGATAAATC-AAAGCAATTATACTGGCACACATAA
* * * *
36637488 TGCATCATCGAATATATCGAAGCAATTATGCT-G-ACACATACA
1 TGCATCATCGGATAAATCAAAGCAATTATACTGGCACACATA-A
* * * *
36637530 GTGCATTATTGGATATACCAAAGCAATTATACTGGCACACATAA
1 -TGCATCATCGGATAAATCAAAGCAATTATACTGGCACACATAA
36637574 TGCATCATCGGATAAATCAAAG
1 TGCATCATCGGATAAATCAAAG
36637596 TATAGCCTGT
Statistics
Matches: 87, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
41 7 0.08
42 3 0.03
43 68 0.78
44 2 0.02
45 7 0.08
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (43 bp):
TGCATCATCGGATAAATCAAAGCAATTATACTGGCACACATAA
Found at i:36639531 original size:15 final size:16
Alignment explanation
Indices: 36639496--36639526 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36639486 TATTAGAAGC
*
36639496 AAATTAGAAAATTTTG
1 AAATTAAAAAATTTTG
36639512 AAATTAAAAAATTTT
1 AAATTAAAAAATTTT
36639527 TAATTTTAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.00, G:0.06, T:0.39
Consensus pattern (16 bp):
AAATTAAAAAATTTTG
Found at i:36646031 original size:33 final size:33
Alignment explanation
Indices: 36645994--36646059 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
36645984 GGTGATGAGG
36645994 GAGAAAAAAATAAAGATGACAAGCTTTAAAGTT
1 GAGAAAAAAATAAAGATGACAAGCTTTAAAGTT
36646027 GAGAAAAAAATAAAGATGACAAGCTTTAAAGTT
1 GAGAAAAAAATAAAGATGACAAGCTTTAAAGTT
36646060 ATCTTTTAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.55, C:0.06, G:0.18, T:0.21
Consensus pattern (33 bp):
GAGAAAAAAATAAAGATGACAAGCTTTAAAGTT
Found at i:36647066 original size:15 final size:16
Alignment explanation
Indices: 36647031--36647061 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
36647021 CATTGGAAGC
36647031 AAATTAAAAATTTTTG
1 AAATTAAAAATTTTTG
36647047 AAATTAAAAATTTTT
1 AAATTAAAAATTTTT
36647062 TAATTTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
AAATTAAAAATTTTTG
Found at i:36647133 original size:20 final size:21
Alignment explanation
Indices: 36647094--36647134 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
36647084 TAGTAACAAA
**
36647094 TTTAAAAAATCAATTTAAAAT
1 TTTAAAAAATCAATAAAAAAT
36647115 TTTAAAAAATC-ATAAAAAAT
1 TTTAAAAAATCAATAAAAAAT
36647135 ATAGAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 7 0.39
21 11 0.61
ACGTcount: A:0.61, C:0.05, G:0.00, T:0.34
Consensus pattern (21 bp):
TTTAAAAAATCAATAAAAAAT
Found at i:36648107 original size:7 final size:7
Alignment explanation
Indices: 36648068--36648122 Score: 58
Period size: 7 Copynumber: 7.9 Consensus size: 7
36648058 GCCCAAATTA
36648068 TAAACCC
1 TAAACCC
*
36648075 TTAACCC
1 TAAACCC
36648082 TAAACACC
1 TAAAC-CC
36648090 -AAACCC
1 TAAACCC
* *
36648096 CAAACCG
1 TAAACCC
*
36648103 TAAACCT
1 TAAACCC
36648110 TAAACCC
1 TAAACCC
36648117 TAAACC
1 TAAACC
36648123 TGCCAATTAA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
6 2 0.05
7 36 0.90
8 2 0.05
ACGTcount: A:0.44, C:0.40, G:0.02, T:0.15
Consensus pattern (7 bp):
TAAACCC
Found at i:36649151 original size:112 final size:110
Alignment explanation
Indices: 36648830--36649156 Score: 252
Period size: 112 Copynumber: 2.9 Consensus size: 110
36648820 AAAATTTTTA
* * * *
36648830 CGGCGTTTACGGGTAAGCGCCGTTAAAGGCGCTATAGCTCAAGATGAAACGTTGCGTTTCGGTTT
1 CGGCGTTTTC-GGTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
* * * ** *
36648895 AAAATTTTTCGATG-TTTTTTAGTTAAACGCCTCTATTATATGGGATATAG
65 AAAATTTTT-G--GCTTTTTTGGTT-AGCGCCACTAAAAGAT-GGATATAG
* * * * * *
36648945 CGGCGTTTTCAGGTAAGCGCCACTAATGCCTCTATA-CGTCAA-ACCCG-AACGATGCGTTT-TG
1 CGGCGTTTTC-GGTAAGCGCCGCTAAAGGCGCTATAGC-TCAAGA--CGAAACGTTGCGTTTCAG
* * ** ** *
36649006 TTCAAAATATTTGCGGCGATTCAGGAATAGCGCCACTAAAAGAT-GATATAG
62 TTTAAAAT-TTT-TGGCTTTTTTGG-TTAGCGCCACTAAAAGATGGATATAG
36649057 CGGCGTTTTCGGCTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
1 CGGCGTTTTCGG-TAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTT
*
36649122 GAAAATTTTTGGCTTTTTTGGTTACGCGCCGCTAA
65 -AAAATTTTTGGCTTTTTTGGTTA-GCGCCACTAA
36649157 TTGCGGGCTA
Statistics
Matches: 161, Mismatches: 37, Indels: 31
0.70 0.16 0.14
Matches are distributed among these distances:
111 6 0.04
112 67 0.42
113 9 0.06
114 29 0.18
115 49 0.30
116 1 0.01
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (110 bp):
CGGCGTTTTCGGTAAGCGCCGCTAAAGGCGCTATAGCTCAAGACGAAACGTTGCGTTTCAGTTTA
AAATTTTTGGCTTTTTTGGTTAGCGCCACTAAAAGATGGATATAG
Found at i:36650310 original size:34 final size:34
Alignment explanation
Indices: 36650234--36650314 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 34
36650224 GCAATGAATC
36650234 AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
1 AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
* *
36650268 TTAA-TTAATTGGTTCATGTAACCAAAAAGAAAA-A-
1 -AAAGTTAATTGATTCATGTAA-CAAAAA-AAAAGAG
36650302 AAAGTTAA-TGATT
1 AAAGTTAATTGATT
36650315 TCAAAATCTA
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
33 6 0.15
34 20 0.51
35 9 0.23
36 4 0.10
ACGTcount: A:0.52, C:0.06, G:0.14, T:0.28
Consensus pattern (34 bp):
AAAGTTAATTGATTCATGTAACAAAAAAAAAGAG
Found at i:36655154 original size:31 final size:32
Alignment explanation
Indices: 36655119--36655194 Score: 91
Period size: 31 Copynumber: 2.4 Consensus size: 32
36655109 AAAAAAACTT
36655119 AATAATTCAATAACTTAAATAAAAAATTTCG-
1 AATAATTCAATAACTTAAATAAAAAATTTCGA
* * * * *
36655150 AATAATTAAATGATTTAAATGAAAAATTTTGA
1 AATAATTCAATAACTTAAATAAAAAATTTCGA
*
36655182 AATAGTTCAATAA
1 AATAATTCAATAA
36655195 TCATTGATAA
Statistics
Matches: 36, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
31 26 0.72
32 10 0.28
ACGTcount: A:0.54, C:0.05, G:0.07, T:0.34
Consensus pattern (32 bp):
AATAATTCAATAACTTAAATAAAAAATTTCGA
Found at i:36662843 original size:22 final size:23
Alignment explanation
Indices: 36662799--36662854 Score: 96
Period size: 22 Copynumber: 2.5 Consensus size: 23
36662789 AATAACATAG
*
36662799 TTTTAATAAGTGCAGAAAAAATC
1 TTTTAATAAATGCAGAAAAAATC
36662822 TTTTAATAAATGCAG-AAAAATC
1 TTTTAATAAATGCAGAAAAAATC
36662844 TTTTAATAAAT
1 TTTTAATAAAT
36662855 AAAAAGAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 18 0.56
23 14 0.44
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (23 bp):
TTTTAATAAATGCAGAAAAAATC
Found at i:36662868 original size:26 final size:23
Alignment explanation
Indices: 36662812--36662866 Score: 67
Period size: 22 Copynumber: 2.3 Consensus size: 23
36662802 TAATAAGTGC
**
36662812 AGAAAAAATCTTTTAATAAATGC
1 AGAAAAAATCTTTTAATAAATAA
36662835 AG-AAAAATCTTTTAATAAATAAAA
1 AGAAAAAATCTTTTAATAAAT--AA
36662859 AGAAAAAA
1 AGAAAAAA
36662867 ATTGAACTGT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 18 0.67
23 2 0.07
24 2 0.07
25 5 0.19
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (23 bp):
AGAAAAAATCTTTTAATAAATAA
Found at i:36663609 original size:28 final size:28
Alignment explanation
Indices: 36663555--36663610 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
36663545 CTATTTATAT
* * ** *
36663555 TCAATTTATACTTTTAATCTTTTAATAA
1 TCAATTTATACATTAAATCCATAAATAA
36663583 TCAATTTATACATTAAATCCATAAATAA
1 TCAATTTATACATTAAATCCATAAATAA
36663611 ATTTCAATAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 23 1.00
ACGTcount: A:0.43, C:0.12, G:0.00, T:0.45
Consensus pattern (28 bp):
TCAATTTATACATTAAATCCATAAATAA
Found at i:36664082 original size:45 final size:45
Alignment explanation
Indices: 36664027--36664114 Score: 133
Period size: 45 Copynumber: 2.0 Consensus size: 45
36664017 GCAGTAATAA
* * *
36664027 TAACAGTATTC-AGCACACAAAGTGTTGAATCTGTAACAGTAACGG
1 TAACAGTATTCGA-CACACAAAGTATCGAATCAGTAACAGTAACGG
36664072 TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAAC
1 TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAAC
36664115 AGTAGTTGGC
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
45 38 0.97
46 1 0.03
ACGTcount: A:0.41, C:0.19, G:0.17, T:0.23
Consensus pattern (45 bp):
TAACAGTATTCGACACACAAAGTATCGAATCAGTAACAGTAACGG
Found at i:36670336 original size:15 final size:15
Alignment explanation
Indices: 36670313--36670355 Score: 68
Period size: 15 Copynumber: 2.9 Consensus size: 15
36670303 TATTTTATTT
* *
36670313 CATTCCATTCCATAC
1 CATTTCATTCCATAA
36670328 CATTTCATTCCATAA
1 CATTTCATTCCATAA
36670343 CATTTCATTCCAT
1 CATTTCATTCCAT
36670356 CAAGCGTTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.28, C:0.33, G:0.00, T:0.40
Consensus pattern (15 bp):
CATTTCATTCCATAA
Found at i:36687813 original size:80 final size:81
Alignment explanation
Indices: 36687718--36687879 Score: 317
Period size: 80 Copynumber: 2.0 Consensus size: 81
36687708 ATAGAATGCT
36687718 ACATCCATAATTAATTAAATTACTAAATTCAGAATTAAAATATTATAACATTAAAAAACTTCAAA
1 ACATCCATAATTAATTAAATTACTAAATTCAGAATTAAAATATTATAACATTAAAAAACTTCAAA
36687783 TCATAACTAAAGTCTG
66 TCATAACTAAAGTCTG
36687799 ACATCCATAA-TAATTAAATTACTAAATTCAGAATTAAAATATTATAACATTAAAAAACTTCAAA
1 ACATCCATAATTAATTAAATTACTAAATTCAGAATTAAAATATTATAACATTAAAAAACTTCAAA
36687863 TCATAACTAAAGTCTG
66 TCATAACTAAAGTCTG
36687879 A
1 A
36687880 AGAAAAATAA
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 71 0.88
81 10 0.12
ACGTcount: A:0.51, C:0.14, G:0.04, T:0.31
Consensus pattern (81 bp):
ACATCCATAATTAATTAAATTACTAAATTCAGAATTAAAATATTATAACATTAAAAAACTTCAAA
TCATAACTAAAGTCTG
Found at i:36695652 original size:281 final size:280
Alignment explanation
Indices: 36695108--36695669 Score: 989
Period size: 281 Copynumber: 2.0 Consensus size: 280
36695098 ATTCAAGTTG
*
36695108 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAGTTAACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
36695173 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
66 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
* * * * *
36695238 AGAAAATATCATTTGATTCTTCTCTCCGATTTCACTTTTATCTAAGGGTTGTTTGACTTAATCTT
131 AGAAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCTC
*
36695303 AGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
196 AGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
36695368 CTTCAGTTGAAACGGACCGA
261 CTTCAGTTGAAACGGACCGA
*
36695388 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
* * * *
36695453 TAGAGCCAAATTTACTGATAACTTTGAAAATAAAGTTACAATCTCTGCAAATTTCTTAAATACCA
66 TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
*
36695518 AGAAAAATATCATGTGATTCTCCTCTCCGATTTGACATTTATCTAAGGGTCGTTTGACTTAATCT
131 AG-AAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCT
*
36695583 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAATAGGTTTGAACCTCCTA
195 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTA
36695648 TCTTCAGTTGAAACGGACCGA
260 TCTTCAGTTGAAACGGACCGA
36695669 A
1 A
36695670 AGGCGGCTTT
Statistics
Matches: 267, Mismatches: 14, Indels: 1
0.95 0.05 0.00
Matches are distributed among these distances:
280 126 0.47
281 141 0.53
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Consensus pattern (280 bp):
ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTAACTTGAAAGTT
TAGAGCCAAATTTACTAATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTCAAATACAA
AGAAAATATCATGTGATTCTCCTCTCCGATTTCACATTTATCTAAGGGTCGTTTGACTTAATCTC
AGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTAT
CTTCAGTTGAAACGGACCGA
Found at i:36697753 original size:751 final size:750
Alignment explanation
Indices: 36695388--36698646 Score: 4881
Period size: 755 Copynumber: 4.3 Consensus size: 750
36695378 AACGGACCGA
* *
36695388 ACTTGAAAATGTTTATTAATAACATTGTACATACAAATTTTGAGTCGAAAATTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* * *
36695453 TAGAGCCAAATTTACTGATAACTTTGAAAATAAAGTTACAATCTCTGCAAATTTCTTAAATACCA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
* * * * *
36695518 AGAAAAATATCATGTGATTCTCCTCTCCGATTTGACATTTATCTAAGGGTCGTTTGACTTAATCT
131 AGAAAAATATCCT-TGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCT
* * *
36695583 CAGACGAGTGTAGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAATAGGTTTGAACCTCCTA
195 CAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTG
* * * *
36695648 TCTTCAGTTGAAACGGACCGAAAGGCGGCTTTCTTCAGAAATGACTTTTGGGTTCTTCTCCATCG
260 TCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATAG
* *
36695713 C---AA------GATTGTTGCAAAAATTAGTTTATTCTCAACTTCCATTAATAACA-TTT-T-TT
325 CATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATT
* * *
36695766 TAGATGCATTTCTCATTTAATTAGTTCATAACAACAAGTTAGTGAAATATG-TCAATTAATTTTA
390 TAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTTTA
* * *
36695830 TGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGACCTCAAATTCTACAATCCTTCATTGTC
455 TGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTC
* * *
36695895 AGGAAATATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACTCTTTTAA
520 AGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAA
*
36695960 GCCTTCACTTCCTAGCAACGAATACTAAGGTATGCATACTAACACACGTTTTACTATATT-AAAA
585 GCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTGAAAA
*
36696024 AAATTATATGTATTTATAGCAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTT
650 AAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTT
* *
36696089 TCTT-TGTTTCCATACAAAACAAATTCATTCAAGTTG
715 T-TTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* *
36696125 ACTTGAAAATGTTTACTAATAACATTGTACACACAAATTCTGAGTCGAAAGTTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* *
36696190 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAATTTACAATCTCTACAAATTTCTTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATAC--
* * *
36696255 AAAAAAAATATATCCTTAGATTCTTCTCTCCGATTTGACTTTTATTCAAGAGTCGTTTGACTTGA
129 AAAGAAAA-ATATCCTT-GATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGA
* * * *
36696320 TCTCATACAAGTGTGGAATGCTTCAACTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTC
192 TCTCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTC
* * * *
36696385 TTTTCTTCAGTTGAAACGGATCAAAAGGTGGCTTT-TTTCAGAAATGACTCTTGGGTTCTTCTCC
257 CTGTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTT-AGAAATGACTCTTGGGTTCTTCTCC
*
36696449 ATAGCATGAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
321 ATAGCATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
*
36696514 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAAT-ATCGATTAAT
386 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAAT
* * * * *
36696578 TTTATACAAAAGTTGAAATTTAAACTTTCAATACGTTAGGGATCTAAAATTGTGCAATCCTTCAT
451 TTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCAT
* * *
36696643 TGACAGGCAGGCAATATAAGAATACGAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATAC
516 T----GTCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATAC
* * * *
36696708 ACTTTTAAGCCTTGACTTCCTAACAACAAATAATAAGGTATGCATACTAACACACGTTTTATTAT
577 ACTTTTAAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTAT
* *
36696773 ATTGAAAAAAAATTATATGCACTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATA
642 ATTG-AAAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATA
*
36696838 TGAATATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTT
706 TGAATATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* *
36696883 ACTTGAAAATGTTTATTATTAACATTGTACAAACAAATTTTGAGTCGAAAGTTCACTTGCAAA-T
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTG-AAAGT
* * *
36696947 TTAGAACCAAATTTATTGACAACTTTGAAAAGAAAGTTACAATCTCTGTAAATTTCTTAAATACA
65 TTAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACA
* * *
36697012 AAGAAAAATACCCGTTGATTCTTCTCTTCAATTTGACTTTTATCCAAGGGTCGTTTGACTTGATC
130 AAGAAAAATATCC-TTGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATC
* *
36697077 TTAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGGCTTGCTTTTGAAACAGGTTTGAACCTCCT
194 TCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCT
* * * * *
36697142 GTCTTCAGTTGAAACGGATTGAAATGCGACTTTCTTTAGAAACGACTCTTGGGTTCTTCTCTATA
259 GTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATA
* *
36697207 GCATAAAGTTGTCGGTTGTTACAAGAA-TTAGTTTATTCTCAACTTCCATTAATAACATTTTTTA
324 GCATAAAGTTGTCGATTGTTACAA-AAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATA
* * *
36697271 TTTAGATGCATTTCGCATTTAATTAGTTTATAACTACAAATTAGTGAAAAATGCT-GATTAATTT
388 TTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTT
*
36697335 TATGCAAAAATTGAAATTTGAACTTTCAATACATTAGTGATCTCAAATTGTGCAATCCTTCATTG
453 TATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTG
* * *
36697400 TCAGGCAAGATAAGAATACAGAGGTTTTGGCAGCCAACAACTCCAATAAAACAAAATACACTTTT
518 TCAGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTT
* *
36697465 AAGCCGTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACCTTTTACTATATTGAA
583 AAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTG-A
* * *
36697530 AAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAAAATGGTAATGTAAGTATATGAATA
647 AAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATA
36697595 TTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
712 TTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
*
36697634 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTTGAAAGTTCACTTGAAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
*
36697699 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTACAAATTTCTTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATAC-A
* *
36697764 AAAAATATATATATCCTTAGATTCTTCTCTCCGATTTGACTTTTATCCAAGAGTCGTTTGACTTG
130 AAGAA-A-A-ATATCCTT-GATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTG
* * * * *
36697829 ATCTCATACGAGTGTGGAATGCTTCAAGTGTCATGTTGATTTGTTTTTGAAACAAGTTTGAACCT
191 ATCTCAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCT
* * * * *
36697894 CCTTTCTTCTGTTGAAATGGATCGAAAGGCGGCTTACTTTAGAAATGACTCTTGGTTTCTTCTCC
256 CCTGTCTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCC
* *
36697959 ATAACTTAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
321 ATAGCATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTA
* * *
36698024 TATTTAGGTGCATTTCTCATTTGATTAGTTCATAACTACAAGTTAGTG-AAAATG-GCGATTAAT
386 TATTTAGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAAT
* * * *
36698087 TTTATGCAAAAATTAAAATTTGAACTTTCAATACGTTAGTGGTCTTAAATTGTGCAATCTTTCAT
451 TTTATGCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCAT
* *
36698152 TTTCAAGG-AAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAACATACACT
516 TGTC-AGGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACT
* *
36698216 TTTAAGCCTTAACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACATGTTTTACTATATT
580 TTTAAGCCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATT
* * * *
36698281 GAAAAAAATTATATGTATTTATAACAGTCTCTTCAATCCTTAGAATGTTAATGTAAGTATATAAA
645 GAAAAAAATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAA
* * * *
36698346 TATTTTCTCTATTTCCATACAGAACAACTTCATTTAGGTTG
710 TATTTTTTCTATTTCCATACAAAACAACTTCATTCAAGTTG
* * * *
36698387 ACTTGAAAATGTTTATTAATAAGATTGTACATACAAATTTTGAATCGAAAGTTCACTTGGAAGTT
1 ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
* * *
36698452 TAAAGCCAAATTTATTTATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTATTAAATACAA
66 TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
* * *
36698517 AGAAAAATATCCTCTGATCCTTCTCTCCAATTTGACTTTTATCCAAGGGTTGTTTGACTTGATCT
131 AGAAAAATATCCT-TGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCT
* * *
36698582 CAGACGAGTGTGGAGTGCTTCAAGTGTCATATTGACTTTCTTTTAAAACAGGTTTGAACCTCCTG
195 CAGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTG
36698647 ATAAGCTATA
Statistics
Matches: 2278, Mismatches: 204, Indels: 68
0.89 0.08 0.03
Matches are distributed among these distances:
737 120 0.05
739 9 0.00
740 164 0.07
743 2 0.00
749 151 0.07
750 8 0.00
751 336 0.15
752 126 0.06
753 216 0.09
754 196 0.09
755 600 0.26
756 134 0.06
757 2 0.00
758 211 0.09
759 3 0.00
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.36
Consensus pattern (750 bp):
ACTTGAAAATGTTTATTAATAACATTGTACACACAAATTTTGAGTCGAAAGTTCACTTGAAAGTT
TAGAGCCAAATTTATTGATAACTTTGAAAAGAAAGTTACAATCTCTGCAAATTTCTTAAATACAA
AGAAAAATATCCTTGATTCTTCTCTCCGATTTGACTTTTATCCAAGGGTCGTTTGACTTGATCTC
AGACGAGTGTGGAGTGCTTCAAGTGTCATGTTGACTTGCTTTTGAAACAGGTTTGAACCTCCTGT
CTTCAGTTGAAACGGATCGAAAGGCGGCTTTCTTTAGAAATGACTCTTGGGTTCTTCTCCATAGC
ATAAAGTTGTCGATTGTTACAAAAGTTAGTTTATTCTCAACTTCCATTAATAACATTTTATATTT
AGATGCATTTCTCATTTAATTAGTTCATAACTACAAGTTAGTGAAAAATGCTCGATTAATTTTAT
GCAAAAATTGAAATTTGAACTTTCAATACGTTAGTGATCTCAAATTGTGCAATCCTTCATTGTCA
GGCAAGATAAGAATACAAAGGTTTTGGCAGCCAACAACTCCAATAGAACAAGATACACTTTTAAG
CCTTCACTTCCTAGCAACAAATACTAAGGTATGCATACTAACACACGTTTTACTATATTGAAAAA
AATTATATGTATTTATAACAATCTCTTCAGTCCTTAGAATGTTAATATAAGTATATGAATATTTT
TTCTATTTCCATACAAAACAACTTCATTCAAGTTG
Found at i:36699121 original size:11 final size:10
Alignment explanation
Indices: 36699094--36699120 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
36699084 TTTCTTCTAA
36699094 AGTTTTTATG
1 AGTTTTTATG
36699104 AGTTTTTATG
1 AGTTTTTATG
36699114 AGTTTTT
1 AGTTTTT
36699121 TTTTGCTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.63
Consensus pattern (10 bp):
AGTTTTTATG
Found at i:36699984 original size:7 final size:7
Alignment explanation
Indices: 36699941--36699973 Score: 52
Period size: 7 Copynumber: 5.0 Consensus size: 7
36699931 TAATTTAGCC
36699941 ATTTT-T
1 ATTTTAT
36699947 ATTTTAT
1 ATTTTAT
36699954 -TTTTAT
1 ATTTTAT
36699960 ATTTTAT
1 ATTTTAT
36699967 ATTTTAT
1 ATTTTAT
36699974 TTTATTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
6 11 0.44
7 14 0.56
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (7 bp):
ATTTTAT
Found at i:36699993 original size:19 final size:19
Alignment explanation
Indices: 36699954--36699995 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
36699944 TTTATTTTAT
* *
36699954 TTTTATATTTTATATTTTA
1 TTTTATATTTTACATTCTA
*
36699973 TTTTATTTTTTACATTCTA
1 TTTTATATTTTACATTCTA
36699992 TTTT
1 TTTT
36699996 TTTCTTTTGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.05, G:0.00, T:0.74
Consensus pattern (19 bp):
TTTTATATTTTACATTCTA
Found at i:36699996 original size:25 final size:24
Alignment explanation
Indices: 36699941--36699996 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
36699931 TAATTTAGCC
* *
36699941 ATTTTTATTTTATTTTTATATTTT
1 ATTTTTATTTTATTTTTACATTCT
36699965 ATATTTTATTTTATTTTTTACATTCT
1 AT-TTTTATTTTA-TTTTTACATTCT
36699991 ATTTTT
1 ATTTTT
36699997 TTCTTTTGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 2 0.07
25 14 0.50
26 12 0.43
ACGTcount: A:0.21, C:0.04, G:0.00, T:0.75
Consensus pattern (24 bp):
ATTTTTATTTTATTTTTACATTCT
Found at i:36703494 original size:27 final size:27
Alignment explanation
Indices: 36703450--36703593 Score: 116
Period size: 27 Copynumber: 5.3 Consensus size: 27
36703440 TATCTGGACC
*
36703450 GAAATACCCCTC-AAGGGTAAAATAACT
1 GAAATA-CCCTCGATGGGTAAAATAACT
* * *
36703477 GAAATATCCTCGATGGGTAAAATGACC
1 GAAATACCCTCGATGGGTAAAATAACT
* *
36703504 GAAATACCCTCGATGAGTAAAATGACT
1 GAAATACCCTCGATGGGTAAAATAACT
*
36703531 TAAATACCCCTC-ATAGGGTAAAATAACT
1 GAAATA-CCCTCGAT-GGGTAAAATAACT
* * * * *
36703559 AAAATGCCCCCG-TAGGGTAGAAT-ACC
1 GAAATACCCTCGAT-GGGTAAAATAACT
36703585 GAAATACCC
1 GAAATACCC
36703594 CTGTGGGGTA
Statistics
Matches: 96, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
26 13 0.14
27 63 0.66
28 20 0.21
ACGTcount: A:0.40, C:0.22, G:0.17, T:0.20
Consensus pattern (27 bp):
GAAATACCCTCGATGGGTAAAATAACT
Found at i:36703524 original size:54 final size:55
Alignment explanation
Indices: 36703446--36703771 Score: 145
Period size: 54 Copynumber: 6.0 Consensus size: 55
36703436 TCGATATCTG
* *
36703446 GACCGAAATACCCCTCAAGGGTAAAATAACTGAAATA-TCCTCGAT-GGGTAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTC-ATAGGGTAAAAT
* * *
36703500 GACCGAAATA-CCCTCGATGAGTAAAATGACTTAAATACCCCTCATAGGGTAAAAT
1 GACCGAAATACCCCTC-AAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* ** * * * * * * *
36703555 AACTAAAATGCCCC-CGTAGGGTAGAAT-ACCGAAATACCCCT-GTGGGGTAAAAT
1 GACCGAAATACCCCTC-AAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* * * ** * * *
36703608 GATCGTAATGCCCCTGTAGGGTAAAATAAC-CATAATACCCCT-ATAGGATAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGA-AATACCCCTCATAGGGTAAAAT
* * ** ** * * * * * *
36703662 GACTGTAATGTCCCTGTAGGGTAAAATGACCGTAATGCCCCT-GTAGGGTAAAAT
1 GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
* * * * * *
36703716 GACC-ATAATGCCCCT-ATAGGGTAAAATGATTGTAATGCCCCT-ATAGGGTAAAAT
1 GACCGA-AATACCCCTCA-AGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
36703770 GA
1 GA
36703772 TCGTAATGCC
Statistics
Matches: 218, Mismatches: 44, Indels: 20
0.77 0.16 0.07
Matches are distributed among these distances:
53 35 0.16
54 152 0.70
55 28 0.13
56 3 0.01
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.23
Consensus pattern (55 bp):
GACCGAAATACCCCTCAAGAGTAAAATAACTGAAATACCCCTCATAGGGTAAAAT
Found at i:36703605 original size:81 final size:83
Alignment explanation
Indices: 36703451--36703648 Score: 214
Period size: 81 Copynumber: 2.4 Consensus size: 83
36703441 ATCTGGACCG
* * *
36703451 AAATACCCCTCA-AGGGTAAAATAACTGAAATATCCTCGATGGGTAAAATGACCGAAATACCCTC
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGATGGGTAAAATGACCGAAATACCCTC
*
36703515 GATGAGTAAAATGA-CTT
66 GATGAGTAAAATGATCGT
* *
36703532 AAATACCCCTCATAGGGTAAAATAACTAAAATGCCCCCG-TAGGGTAGAAT-ACCGAAATACCC-
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGAT-GGGTAAAATGACCGAAATACCCT
*
36703594 CTG-TGGGGTAAAATGATCGT
65 C-GAT-GAGTAAAATGATCGT
* * * *
36703614 -AATGCCCCT-GTAGGGTAAAATAACCATAATACCCC
1 AAATACCCCTCATAGGGTAAAATAACTAAAATACCCC
36703649 TATAGGATAA
Statistics
Matches: 100, Mismatches: 12, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
80 24 0.24
81 44 0.44
82 32 0.32
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (83 bp):
AAATACCCCTCATAGGGTAAAATAACTAAAATACCCCCGATGGGTAAAATGACCGAAATACCCTC
GATGAGTAAAATGATCGT
Found at i:36703622 original size:27 final size:27
Alignment explanation
Indices: 36703561--36703789 Score: 271
Period size: 27 Copynumber: 8.5 Consensus size: 27
36703551 AAATAACTAA
* * *
36703561 AATGCCCCCGTAGGGTAGAAT-ACCGA
1 AATGCCCCTGTAGGGTAAAATGACCGT
* * *
36703587 AATACCCCTGTGGGGTAAAATGATCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* *
36703614 AATGCCCCTGTAGGGTAAAATAACCAT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* * * *
36703641 AATACCCCTATAGGATAAAATGACTGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
36703668 AATGTCCCTGTAGGGTAAAATGACCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
36703695 AATGCCCCTGTAGGGTAAAATGACCAT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* **
36703722 AATGCCCCTATAGGGTAAAATGATTGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
* *
36703749 AATGCCCCTATAGGGTAAAATGATCGT
1 AATGCCCCTGTAGGGTAAAATGACCGT
*
36703776 AATGCCCTTGTAGG
1 AATGCCCCTGTAGG
36703790 TAGAGGTGTT
Statistics
Matches: 171, Mismatches: 31, Indels: 1
0.84 0.15 0.00
Matches are distributed among these distances:
26 17 0.10
27 154 0.90
ACGTcount: A:0.33, C:0.20, G:0.23, T:0.24
Consensus pattern (27 bp):
AATGCCCCTGTAGGGTAAAATGACCGT
Found at i:36703677 original size:81 final size:81
Alignment explanation
Indices: 36703591--36703789 Score: 317
Period size: 81 Copynumber: 2.5 Consensus size: 81
36703581 TACCGAAATA
*
36703591 CCCCTGTGGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
36703656 TAAAATGACTGTAATG
66 TAAAATGACTGTAATG
* * * * *
36703672 TCCCTGTAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCATAATGCCCCTATAGGG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
*
36703737 TAAAATGATTGTAATG
66 TAAAATGACTGTAATG
* *
36703753 CCCCTATAGGGTAAAATGATCGTAATGCCCTTGTAGG
1 CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGG
36703790 TAGAGGTGTT
Statistics
Matches: 107, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.32, C:0.20, G:0.23, T:0.26
Consensus pattern (81 bp):
CCCCTGTAGGGTAAAATGATCGTAATGCCCCTGTAGGGTAAAATAACCATAATACCCCTATAGGA
TAAAATGACTGTAATG
Found at i:36704354 original size:24 final size:24
Alignment explanation
Indices: 36704279--36704360 Score: 78
Period size: 24 Copynumber: 3.5 Consensus size: 24
36704269 TTCAAGGTCA
* * * *
36704279 AATGATTGTTTTGTCTGTGGTT-A
1 AATGACTGATTTGTCTGTGTTTGG
36704302 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTTGG
* *
36704326 TATGACTGATTTGTTTGTGATTT-G
1 AATGACTGATTTGTCTGTG-TTTGG
*
36704350 AATGATTGATT
1 AATGACTGATT
36704361 CTGAGCATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 19 0.39
24 27 0.55
25 3 0.06
ACGTcount: A:0.20, C:0.05, G:0.26, T:0.50
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGTTTGG
Found at i:36704514 original size:26 final size:26
Alignment explanation
Indices: 36704476--36704533 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
36704466 TTGGCCATAT
* *
36704476 ATACTATTGCTGGCAACTTTGCTGTG
1 ATACTATTACTGGCAACTTTGCTGCG
* * * *
36704502 ATACTGTTACTGGGAGCTTTGTTGCG
1 ATACTATTACTGGCAACTTTGCTGCG
36704528 ATACTA
1 ATACTA
36704534 CTAATGGCTT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.21, C:0.17, G:0.24, T:0.38
Consensus pattern (26 bp):
ATACTATTACTGGCAACTTTGCTGCG
Found at i:36704573 original size:32 final size:31
Alignment explanation
Indices: 36704532--36704787 Score: 226
Period size: 32 Copynumber: 8.0 Consensus size: 31
36704522 GTTGCGATAC
* * *
36704532 TACTAATGGCTTTGTTCTGATCATAGTACTGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
* * *
36704564 TACTGATGGCTTTGTGTCGATCACAGTACCGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
* * * * *
36704596 TACTGAAGGTTTTGTGCCAATTATATTACCGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
*
36704628 TACCGATGG-TTGTGTGCCGATCATATCACTGT
1 TACTGATGGCTT-TGTGCCGATCATAT-ACTGT
* * * *
36704660 TACTGATGGCTGTGTGTCAATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATAT-ACTGT
* *
36704692 TGCTGATGGCTTTGTGCCGATCATGTTACTGT
1 TACTGATGGCTTTGTGCCGATCAT-ATACTGT
* *
36704724 TACTGATGGCTGTGTGCCGATCATATCACTGC
1 TACTGATGGCTTTGTGCCGATCATAT-ACTGT
* *
36704756 TACTGATGGCTTTGTGCCAATCACATTACTGT
1 TACTGATGGCTTTGTGCCGATCATA-TACTGT
36704788 ACTTATGACT
Statistics
Matches: 181, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
31 4 0.02
32 174 0.96
33 3 0.02
ACGTcount: A:0.20, C:0.20, G:0.23, T:0.37
Consensus pattern (31 bp):
TACTGATGGCTTTGTGCCGATCATATACTGT
Found at i:36704726 original size:96 final size:96
Alignment explanation
Indices: 36704550--36704780 Score: 286
Period size: 96 Copynumber: 2.4 Consensus size: 96
36704540 GCTTTGTTCT
* * *
36704550 GATCATAGT-ACTGTTACTGATGGCTTTGTGTCGATCACAGTACCGTTACTGAAGGTTTTGTGCC
1 GATCATA-TCACTGTTACTGATGGCTTTGTGTCAATCACAGTACCGCTACTGAAGGCTTTGTGCC
* *
36704614 AATTATATTACCGTTACCGATGGTTGTGTGCC
65 AATCATATTACCGTTACCGATGGCTGTGTGCC
* * * * *
36704646 GATCATATCACTGTTACTGATGGCTGTGTGTCAATCATA-TCACTGCTGCTGATGGCTTTGTGCC
1 GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACAGT-ACCGCTACTGAAGGCTTTGTGCC
* * * *
36704710 GATCATGTTACTGTTACTGATGGCTGTGTGCC
65 AATCATATTACCGTTACCGATGGCTGTGTGCC
* *
36704742 GATCATATCACTGCTACTGATGGCTTTGTGCCAATCACA
1 GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACA
36704781 TTACTGTACT
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
95 2 0.02
96 113 0.98
ACGTcount: A:0.20, C:0.21, G:0.23, T:0.35
Consensus pattern (96 bp):
GATCATATCACTGTTACTGATGGCTTTGTGTCAATCACAGTACCGCTACTGAAGGCTTTGTGCCA
ATCATATTACCGTTACCGATGGCTGTGTGCC
Found at i:36707897 original size:5 final size:5
Alignment explanation
Indices: 36707887--36707956 Score: 61
Period size: 5 Copynumber: 13.0 Consensus size: 5
36707877 AGGATCATTG
*
36707887 ATTTT ATTTT ATTTT ATTTT ATTTTT ATTTTT ATTTTT ACTTTT GTTTT
1 ATTTT ATTTT ATTTT ATTTT A-TTTT A-TTTT A-TTTT A-TTTT ATTTT
*
36707936 -TTGTT GTTTT ATTTTT ATTTT
1 ATT-TT ATTTT A-TTTT ATTTT
36707957 CTTAGACTTC
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
4 2 0.03
5 28 0.48
6 28 0.48
ACGTcount: A:0.14, C:0.01, G:0.04, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:36707914 original size:6 final size:6
Alignment explanation
Indices: 36707888--36707956 Score: 65
Period size: 6 Copynumber: 11.5 Consensus size: 6
36707878 GGATCATTGA
36707888 TTTTA- TTTTA- TTTTA- TTTTAT TTTTAT TTTTAT TTTTACT TTTGT-T
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TTT-TAT
*
36707934 TTTTGTT GTTTTAT TTTTAT TTT
1 TTTT-AT -TTTTAT TTTTAT TTT
36707957 CTTAGACTTC
Statistics
Matches: 57, Mismatches: 1, Indels: 11
0.83 0.01 0.16
Matches are distributed among these distances:
5 16 0.28
6 30 0.53
7 6 0.11
8 5 0.09
ACGTcount: A:0.13, C:0.01, G:0.04, T:0.81
Consensus pattern (6 bp):
TTTTAT
Found at i:36724847 original size:81 final size:81
Alignment explanation
Indices: 36724739--36724904 Score: 307
Period size: 81 Copynumber: 2.1 Consensus size: 81
36724729 CACCTAAGTG
36724739 TACA-AAATCCGGGTCCATCAAGTCATATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTC
1 TACAGAAATCCGGGTCCATCAAGTCATATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTC
36724803 CCGCGAACCTCATCCT
66 CCGCGAACCTCATCCT
* *
36724819 TACAGAAATCCGGGTCCGTCAATTCATATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTC
1 TACAGAAATCCGGGTCCATCAAGTCATATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTC
36724884 CCGCGAACCTCATCCT
66 CCGCGAACCTCATCCT
36724900 TACAG
1 TACAG
36724905 CGGGATTACC
Statistics
Matches: 83, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
80 4 0.05
81 79 0.95
ACGTcount: A:0.27, C:0.32, G:0.16, T:0.25
Consensus pattern (81 bp):
TACAGAAATCCGGGTCCATCAAGTCATATTCATGTGCGCACATTTCCATTTCAGAGAGCACACTC
CCGCGAACCTCATCCT
Found at i:36728331 original size:16 final size:16
Alignment explanation
Indices: 36728310--36728342 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
36728300 ATGTTACTGT
36728310 TTGTTTCTCTTGAAAA
1 TTGTTTCTCTTGAAAA
36728326 TTGTTTCTCTTGAAAA
1 TTGTTTCTCTTGAAAA
36728342 T
1 T
36728343 AGACTCATTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.12, T:0.52
Consensus pattern (16 bp):
TTGTTTCTCTTGAAAA
Found at i:36736406 original size:40 final size:40
Alignment explanation
Indices: 36736360--36736483 Score: 185
Period size: 40 Copynumber: 3.1 Consensus size: 40
36736350 TGTTATACTC
* *
36736360 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATAAGCT
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* *
36736400 TCTGTCTAGTGTATTTCGGTTGGATTAGCTCTTATGAGCA
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* * *
36736440 TCTATCTGGTGTGTTTCGGTTGAACTAGCTCTTATGAGCA
1 TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
36736480 TCTG
1 TCTG
36736484 GTGTGTTTTA
Statistics
Matches: 74, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 74 1.00
ACGTcount: A:0.16, C:0.17, G:0.25, T:0.42
Consensus pattern (40 bp):
TCTGTCTAGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:36736498 original size:36 final size:38
Alignment explanation
Indices: 36736368--36736498 Score: 104
Period size: 40 Copynumber: 3.4 Consensus size: 38
36736358 TCTCTGTCTA
* * * * * *
36736368 GTGTGTTTCGGTTGGACTAGCTCTTATAAGCTTCTGTCTA
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAG--ACTATCTG
* * * *
36736408 GTGTATTTCGGTTGGATTAGCTCTTATGAGCATCTATCTG
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAG-A-CTATCTG
*
36736448 GTGTGTTTCGGTTGAACTAGCTCTTATGAG-C-ATCTG
1 GTGTGTTTCAGTTGAACTAGCTCTTATGAGACTATCTG
*
36736484 GTGTGTTTTAGTTGA
1 GTGTGTTTCAGTTGA
36736499 TCTAATGATG
Statistics
Matches: 78, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
36 18 0.23
37 1 0.01
40 59 0.76
ACGTcount: A:0.16, C:0.15, G:0.27, T:0.43
Consensus pattern (38 bp):
GTGTGTTTCAGTTGAACTAGCTCTTATGAGACTATCTG
Found at i:36739817 original size:274 final size:274
Alignment explanation
Indices: 36739328--36739877 Score: 974
Period size: 274 Copynumber: 2.0 Consensus size: 274
36739318 CATTTTCTTT
**
36739328 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTACGAGA
1 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
*
36739393 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTATGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
66 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
* *
36739458 CTAGCTCAATAAGCTTTCTTGATCGATATCTCTCAAGGCACCGTTGAATACCACCAATCCATAAC
131 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
* * * *
36739523 AGTAAAATTTTTTTTCTCTTAAAAATGTTACCGAAGACCTCCAAATTCCATTTTTTAACAGCTTC
196 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
*
36739588 AACAAAACCCCAAA
261 AACAAAAACCCAAA
36739602 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
1 CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
** *
36739667 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGTTTGCAGGTCTTTCT
66 TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
36739732 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
131 CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
36739797 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
196 AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
*
36739862 AACAAAAATCCAAA
261 AACAAAAACCCAAA
36739876 CT
1 CT
36739878 GGCCCCTCCG
Statistics
Matches: 262, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
274 262 1.00
ACGTcount: A:0.32, C:0.24, G:0.12, T:0.32
Consensus pattern (274 bp):
CTATTAGCTTGACAATGAAAATACTTTGTATTTCGATCTCCGAGTAATAGCCAATCACTAAAAGA
TTTCTGTTTCCAAAAAAGTTCCTCGTTGTCTAGGACACCTTCAAGTTCAGCCTACAGGTCTTTCT
CTAGCTCAATAAGCTTTCTTGATCGATAACTCTCAAGGCACCATTGAATACCACCAATCCATAAC
AGTAAAATCTGTTTTCTCTTAAAAATGTTACCGAAAACCTCCAAATTCCATTTCTTAACAGCTTC
AACAAAAACCCAAA
Found at i:36744430 original size:122 final size:122
Alignment explanation
Indices: 36744281--36744525 Score: 490
Period size: 122 Copynumber: 2.0 Consensus size: 122
36744271 ACCCAGGTGA
36744281 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
1 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
36744346 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
66 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
36744403 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
1 AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
36744468 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
66 GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
36744525 A
1 A
36744526 TTGGGTACAG
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
122 123 1.00
ACGTcount: A:0.44, C:0.13, G:0.14, T:0.29
Consensus pattern (122 bp):
AACATCAAATCAACCTGTTCAACCAAGAATAGATGATTTAAATAAAAGAAATGTTGCTCAAGGAG
GAATATATTTAGATTTAACTAATACTCCTATATCAGACTATGAAAAAGTTATAGATG
Found at i:36745055 original size:18 final size:18
Alignment explanation
Indices: 36745021--36745068 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
36745011 GGATTGGGAA
*
36745021 TCATATTCTTTT-TGTTTT
1 TCATATT-TTTTACGTTTT
36745039 TCATATTTTTTACGTTTT
1 TCATATTTTTTACGTTTT
* *
36745057 TTATGTTTTTTA
1 TCATATTTTTTA
36745069 TAATTTTTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
17 4 0.15
18 22 0.85
ACGTcount: A:0.15, C:0.08, G:0.06, T:0.71
Consensus pattern (18 bp):
TCATATTTTTTACGTTTT
Found at i:36764945 original size:24 final size:24
Alignment explanation
Indices: 36764918--36764963 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
36764908 AACCTAATTC
36764918 TAATAAAAG-TCAAATATATTATGT
1 TAATAAAAGCT-AAATATATTATGT
* *
36764942 TAATGAATGCTAAATATATTAT
1 TAATAAAAGCTAAATATATTAT
36764964 ACTCATAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 18 0.95
25 1 0.05
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (24 bp):
TAATAAAAGCTAAATATATTATGT
Found at i:36765118 original size:21 final size:21
Alignment explanation
Indices: 36765071--36765121 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
36765061 GATGAATCAT
* *
36765071 CCTTAAATCTCTAAATCCAAA
1 CCTTATATCTCTAAACCCAAA
36765092 CCTTATATCTCTAAACCCAAA
1 CCTTATATCTCTAAACCCAAA
36765113 CCTTATATC
1 CCTTATATC
36765122 AATAGTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.31, G:0.00, T:0.31
Consensus pattern (21 bp):
CCTTATATCTCTAAACCCAAA
Found at i:36765435 original size:34 final size:34
Alignment explanation
Indices: 36765392--36765459 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
36765382 GAACTATGTG
36765392 TACATATACCCCTAACTTAATACAACTCTTAAAT
1 TACATATACCCCTAACTTAATACAACTCTTAAAT
36765426 TACATATACCCCTAACTTAATACAACTCTTAAAT
1 TACATATACCCCTAACTTAATACAACTCTTAAAT
36765460 GCACAAACAT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.32
Consensus pattern (34 bp):
TACATATACCCCTAACTTAATACAACTCTTAAAT
Found at i:36772313 original size:2 final size:2
Alignment explanation
Indices: 36772306--36772330 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36772296 CTTTATTAAA
36772306 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
36772331 GTTGCTATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.