Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 114 of 163
Found at i:36773931 original size:2 final size:2
Alignment explanation
Indices: 36773924--36773949 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36773914 AATTGGTTGC
36773924 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
36773950 AAGGAAATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36777065 original size:80 final size:81
Alignment explanation
Indices: 36776966--36777129 Score: 321
Period size: 80 Copynumber: 2.0 Consensus size: 81
36776956 ATTTCTATAT
36776966 ATTTTATATTATATACTTGTCAATTATTTTTTTTCGTTTTCGCTGTGTTATTTAACGAAGGCTTT
1 ATTTTATATTATATACTTGTCAATTATTTTTTTTCGTTTTCGCTGTGTTATTTAACGAAGGCTTT
36777031 ATTAATAAATTGGTAA
66 ATTAATAAATTGGTAA
36777047 ATTTTATATTAT-TACTTGTCAATTATTTTTTTTCGTTTTCGCTGTGTTATTTAACGAAGGCTTT
1 ATTTTATATTATATACTTGTCAATTATTTTTTTTCGTTTTCGCTGTGTTATTTAACGAAGGCTTT
36777111 ATTAATAAATTGGTAA
66 ATTAATAAATTGGTAA
36777127 ATT
1 ATT
36777130 AGCCTCAATT
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
80 71 0.86
81 12 0.14
ACGTcount: A:0.27, C:0.09, G:0.12, T:0.52
Consensus pattern (81 bp):
ATTTTATATTATATACTTGTCAATTATTTTTTTTCGTTTTCGCTGTGTTATTTAACGAAGGCTTT
ATTAATAAATTGGTAA
Found at i:36778987 original size:13 final size:13
Alignment explanation
Indices: 36778969--36778996 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
36778959 TGCCATATGT
36778969 ATAATCCCTGACG
1 ATAATCCCTGACG
36778982 ATAATCCCTGACG
1 ATAATCCCTGACG
36778995 AT
1 AT
36778997 CCCCGAGCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.32, C:0.29, G:0.14, T:0.25
Consensus pattern (13 bp):
ATAATCCCTGACG
Found at i:36779626 original size:30 final size:30
Alignment explanation
Indices: 36779590--36779761 Score: 220
Period size: 30 Copynumber: 5.7 Consensus size: 30
36779580 ATCCAATGCT
* *
36779590 CAAATCAATTCGGTAATATATATACATATG
1 CAAATCAATTCGGCAATATATATACATATA
36779620 CAAATCAATTCGGCAATATATATACATATA
1 CAAATCAATTCGGCAATATATATACATATA
* * * *
36779650 TAAATCAATTCGACAATGTGTAT-CTATATA
1 CAAATCAATTCGGCAATATATATAC-ATATA
* * * *
36779680 AAAATCAATTCAGCAATGTATATCCATATA
1 CAAATCAATTCGGCAATATATATACATATA
* *
36779710 CAAATCAATTCGGCAATGTATATCCATATA
1 CAAATCAATTCGGCAATATATATACATATA
36779740 CAAATCAATTCGGCAATATATA
1 CAAATCAATTCGGCAATATATA
36779762 AAACATGTAC
Statistics
Matches: 127, Mismatches: 13, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
29 1 0.01
30 125 0.98
31 1 0.01
ACGTcount: A:0.44, C:0.16, G:0.09, T:0.31
Consensus pattern (30 bp):
CAAATCAATTCGGCAATATATATACATATA
Found at i:36779745 original size:90 final size:90
Alignment explanation
Indices: 36779591--36779756 Score: 251
Period size: 90 Copynumber: 1.8 Consensus size: 90
36779581 TCCAATGCTC
* * * *
36779591 AAATCAATTCGGTAATATATATACATATGCAAATCAATTCGGCAATATATATACATATATAAATC
1 AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
36779656 AATTCGACAATGTGTATCTATATAA
66 AATTCGACAATGTGTATCTATATAA
* * * *
36779681 AAATCAATTCAGCAATGTATATCCATATACAAATCAATTCGGCAATGTATATCCATATACAAATC
1 AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
*
36779746 AATTCGGCAAT
66 AATTCGACAAT
36779757 ATATAAAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
90 67 1.00
ACGTcount: A:0.43, C:0.16, G:0.09, T:0.31
Consensus pattern (90 bp):
AAATCAATTCAGCAATATATATACATATACAAATCAATTCGGCAATATATATACATATACAAATC
AATTCGACAATGTGTATCTATATAA
Found at i:36795231 original size:18 final size:17
Alignment explanation
Indices: 36795203--36795237 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
36795193 ATTATTAAGA
*
36795203 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
36795220 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
36795238 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:36796479 original size:2 final size:2
Alignment explanation
Indices: 36796468--36796503 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
36796458 AGGGGAAGCT
36796468 TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
36796504 TAATACGAGA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:36800870 original size:17 final size:20
Alignment explanation
Indices: 36800833--36800878 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
36800823 TTTTGACGAG
36800833 TGAGTCCATAAATATTATTA
1 TGAGTCCATAAATATTATTA
36800853 TGAGTCCATAAATATTATTA
1 TGAGTCCATAAATATTATTA
36800873 TGAGTC
1 TGAGTC
36800879 AAATGCAATG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.37, C:0.11, G:0.13, T:0.39
Consensus pattern (20 bp):
TGAGTCCATAAATATTATTA
Found at i:36802008 original size:22 final size:23
Alignment explanation
Indices: 36801983--36802025 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
36801973 TAGGTATTTT
*
36801983 TGTATTTT-TTATGTTTGAATTG
1 TGTATTTTATAATGTTTGAATTG
36802005 TGTATTTTATAATGTTTGAAT
1 TGTATTTTATAATGTTTGAAT
36802026 ATAGATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.23, C:0.00, G:0.16, T:0.60
Consensus pattern (23 bp):
TGTATTTTATAATGTTTGAATTG
Found at i:36816742 original size:2 final size:2
Alignment explanation
Indices: 36816735--36816761 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
36816725 GACCTTTGGA
36816735 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
36816762 AAGAAAAGTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:36819689 original size:73 final size:73
Alignment explanation
Indices: 36819607--36819749 Score: 207
Period size: 73 Copynumber: 2.0 Consensus size: 73
36819597 AAGTGTGTTT
* * * *
36819607 GGTTCATTTATGTTTATGAATAAACTCGTTTATTTATCTATTCGTTTATAAAATCATTTAGTT-A
1 GGTTCATTTATATTTACGAATAAACTCGTTTATTTATCTATTCATATATAAAATCATTTA-TTCA
36819671 AAAATGCTC
65 AAAATGCTC
* * *
36819680 GGTTTATTTATATTTACGAATAAACTCGTTTATTTATCTATTTATATATAAACTCATTTATTCAA
1 GGTTCATTTATATTTACGAATAAACTCGTTTATTTATCTATTCATATATAAAATCATTTATTCAA
36819745 AAATG
66 AAATG
36819750 ATATTTTCCT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
72 2 0.03
73 60 0.97
ACGTcount: A:0.34, C:0.10, G:0.09, T:0.47
Consensus pattern (73 bp):
GGTTCATTTATATTTACGAATAAACTCGTTTATTTATCTATTCATATATAAAATCATTTATTCAA
AAATGCTC
Found at i:36822849 original size:20 final size:18
Alignment explanation
Indices: 36822804--36822851 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
36822794 ATTAATTTTT
36822804 TTAAAA-AATTTAAAATA
1 TTAAAATAATTTAAAATA
36822821 TTCATAAATAATTTAGAAATAA
1 TT-A-AAATAATTTA-AAAT-A
36822843 TTAAAATAA
1 TTAAAATAA
36822852 AAAATATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.08
18 1 0.04
19 3 0.12
20 12 0.46
21 5 0.19
22 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
TTAAAATAATTTAAAATA
Found at i:36822851 original size:9 final size:10
Alignment explanation
Indices: 36822803--36822851 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 10
36822793 AATTAATTTT
36822803 TTTAAAA-AA
1 TTTAAAATAA
36822812 TTTAAAAT-A
1 TTTAAAATAA
*
36822821 TTCATAAATAA
1 TTTA-AAATAA
36822832 TTTAGAAATAA
1 TTTA-AAATAA
36822843 -TTAAAATAA
1 TTTAAAATAA
36822852 AAAATATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 17 0.50
10 7 0.21
11 10 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
TTTAAAATAA
Found at i:36827102 original size:23 final size:22
Alignment explanation
Indices: 36827069--36827115 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36827059 ATTTTTAAAA
*
36827069 TTAAAAAAATTATTTTTA-TTAT
1 TTAAAAAAATT-TTTATATTTAT
36827091 TTAAAAATAATTTTTATATTTAT
1 TTAAAAA-AATTTTTATATTTAT
36827114 TT
1 TT
36827116 TAAATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAAAAATTTTTATATTTAT
Found at i:36827110 original size:19 final size:20
Alignment explanation
Indices: 36827073--36827112 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36827063 TTAAAATTAA
*
36827073 AAAAATTATTTTTATTATTT
1 AAAAATAATTTTTATTATTT
36827093 AAAAATAATTTTTA-TATTT
1 AAAAATAATTTTTATTATTT
36827112 A
1 A
36827113 TTTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAAAATAATTTTTATTATTT
Found at i:36831630 original size:329 final size:328
Alignment explanation
Indices: 36831032--36831691 Score: 1270
Period size: 329 Copynumber: 2.0 Consensus size: 328
36831022 CAACTTTTCA
36831032 CTAAATGAGTAAACAAACAAGAGTACAATATGGAGAAAATAAACTTACATGTATTAAACGTACAT
1 CTAAATGAGTAAACAAACAAGAGTACAATATGGAGAAAATAAACTTACATGTATTAAACGTACAT
36831097 TACCCAAAACCCCGAATACAAAGCTCAAAATTCTAAAGAGCAAACTGATAAACAAAATCCTAAAT
66 TACCCAAAACCCCGAATACAAAGCTCAAAATTCTAAAGAGCAAACTGATAAACAAAATCCTAAAT
36831162 CTCATAGGGAACTCATAAAAGGGATATAAAAACACTCTCCATAATTACCACGAAACTCTCACCAA
131 CTCATAGGGAACTCATAAAAGGGATATAAAAACACTCTCCATAATTACCAC-AAACTCTCACCAA
36831227 AAATCATATGCGACTACATCTTATCGCCCTCAAAGAAAAAACCTACGACTACATCTTGATTGGCT
195 AAATCATATGCGACTACATCTTATCGCCCTCAAAGAAAAAACCTACGACTACATCTTGATTGGCT
36831292 TAACAAAATAGGGATACAATAGCCCTTTTAAATAGGCTAAGATTAGAGTTCTAATCATACTAAAA
260 TAACAAAATAGGGATACAATAGCCCTTTTAAATAGGCTAAGATTAGAGTTCTAATCATACTAAAA
36831357 TATC
325 TATC
36831361 CTAAATGAGTAAACAAACAAGAGTACAATATGGAGAAAATAAACTTACATGTATTAAACGTACAT
1 CTAAATGAGTAAACAAACAAGAGTACAATATGGAGAAAATAAACTTACATGTATTAAACGTACAT
36831426 TACCCAAAACCCCGAATACAAAGCTCAAAATTCTAAAGAGCAAACTGATAAACAAAATCCTAAAT
66 TACCCAAAACCCCGAATACAAAGCTCAAAATTCTAAAGAGCAAACTGATAAACAAAATCCTAAAT
36831491 CTCATAGGGAACTCATAAAAGGGATATAAAAACACTCTCCATATAATTACCA-AAACTCTCACCA
131 CTCATAGGGAACTCATAAAAGGGATATAAAAACACTCTCC--ATAATTACCACAAACTCTCACCA
36831555 AAAATCATATGCGACTACATCTTTATCG-CCTCAAAGAAAAAACCTACGACTACATCTTGATTGG
194 AAAATCATATGCGACTACATC-TTATCGCCCTCAAAGAAAAAACCTACGACTACATCTTGATTGG
36831619 CTTAACAAAATAGGGATACAATAGCCCTTTTAAATAGGCTAAGATTAGAGTTCTAATCATACTAA
258 CTTAACAAAATAGGGATACAATAGCCCTTTTAAATAGGCTAAGATTAGAGTTCTAATCATACTAA
36831684 AATATC
323 AATATC
36831690 CT
1 CT
36831692 TGGAATAATC
Statistics
Matches: 328, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
329 312 0.95
330 6 0.02
331 10 0.03
ACGTcount: A:0.45, C:0.20, G:0.11, T:0.23
Consensus pattern (328 bp):
CTAAATGAGTAAACAAACAAGAGTACAATATGGAGAAAATAAACTTACATGTATTAAACGTACAT
TACCCAAAACCCCGAATACAAAGCTCAAAATTCTAAAGAGCAAACTGATAAACAAAATCCTAAAT
CTCATAGGGAACTCATAAAAGGGATATAAAAACACTCTCCATAATTACCACAAACTCTCACCAAA
AATCATATGCGACTACATCTTATCGCCCTCAAAGAAAAAACCTACGACTACATCTTGATTGGCTT
AACAAAATAGGGATACAATAGCCCTTTTAAATAGGCTAAGATTAGAGTTCTAATCATACTAAAAT
ATC
Found at i:36833328 original size:20 final size:18
Alignment explanation
Indices: 36833283--36833330 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 18
36833273 ATTAATTTTT
36833283 TTAAAA-AATTTAAAATA
1 TTAAAATAATTTAAAATA
36833300 TTCATAAATAATTTAGAAATAA
1 TT-A-AAATAATTTA-AAAT-A
36833322 TTAAAATAA
1 TTAAAATAA
36833331 AAAATATTTA
Statistics
Matches: 26, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 2 0.08
18 1 0.04
19 3 0.12
20 12 0.46
21 5 0.19
22 3 0.12
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (18 bp):
TTAAAATAATTTAAAATA
Found at i:36833330 original size:9 final size:10
Alignment explanation
Indices: 36833282--36833330 Score: 50
Period size: 9 Copynumber: 5.0 Consensus size: 10
36833272 AATTAATTTT
36833282 TTTAAAA-AA
1 TTTAAAATAA
36833291 TTTAAAAT-A
1 TTTAAAATAA
*
36833300 TTCATAAATAA
1 TTTA-AAATAA
36833311 TTTAGAAATAA
1 TTTA-AAATAA
36833322 -TTAAAATAA
1 TTTAAAATAA
36833331 AAAATATTTA
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 17 0.50
10 7 0.21
11 10 0.29
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (10 bp):
TTTAAAATAA
Found at i:36837581 original size:23 final size:22
Alignment explanation
Indices: 36837548--36837594 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
36837538 ATTTTTAAAA
*
36837548 TTAAAAAAATTATTTTTA-TTAT
1 TTAAAAAAATT-TTTATATTTAT
36837570 TTAAAAATAATTTTTATATTTAT
1 TTAAAAA-AATTTTTATATTTAT
36837593 TT
1 TT
36837595 TAAATTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTAAAAAAATTTTTATATTTAT
Found at i:36837589 original size:19 final size:20
Alignment explanation
Indices: 36837552--36837591 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
36837542 TTAAAATTAA
*
36837552 AAAAATTATTTTTATTATTT
1 AAAAATAATTTTTATTATTT
36837572 AAAAATAATTTTTA-TATTT
1 AAAAATAATTTTTATTATTT
36837591 A
1 A
36837592 TTTTAAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (20 bp):
AAAAATAATTTTTATTATTT
Found at i:36844942 original size:31 final size:31
Alignment explanation
Indices: 36844907--36844969 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
36844897 GCTGAACATC
**
36844907 TTAGTGACTTAAATAAAAACTTTTGAATAGT
1 TTAGTGACTTAAATAAAAACTTTCAAATAGT
*
36844938 TTAGTGACTTAAATGAAAACTTTCAAATAGT
1 TTAGTGACTTAAATAAAAACTTTCAAATAGT
36844969 T
1 T
36844970 CAATGACCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (31 bp):
TTAGTGACTTAAATAAAAACTTTCAAATAGT
Found at i:36847245 original size:33 final size:33
Alignment explanation
Indices: 36847203--36847270 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
36847193 TTTCTAGAAA
36847203 AAATGTGGGTACTGAAAATAGCCGTAAAATTCT
1 AAATGTGGGTACTGAAAATAGCCGTAAAATTCT
36847236 AAATGTGGGTACTGAAAATAGCCGTAAAATTCT
1 AAATGTGGGTACTGAAAATAGCCGTAAAATTCT
36847269 AA
1 AA
36847271 GTTGTGGGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.41, C:0.12, G:0.21, T:0.26
Consensus pattern (33 bp):
AAATGTGGGTACTGAAAATAGCCGTAAAATTCT
Found at i:36852587 original size:32 final size:32
Alignment explanation
Indices: 36852546--36852610 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
36852536 AGAGTGGTGT
36852546 TGCCGACGAATACTAGTCATCTTTTTCTTGGC
1 TGCCGACGAATACTAGTCATCTTTTTCTTGGC
36852578 TGCCGACGAATACTAGTCATCTTTTTCTTGGC
1 TGCCGACGAATACTAGTCATCTTTTTCTTGGC
36852610 T
1 T
36852611 TACCCCAAGC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.18, C:0.25, G:0.18, T:0.38
Consensus pattern (32 bp):
TGCCGACGAATACTAGTCATCTTTTTCTTGGC
Found at i:36859119 original size:43 final size:43
Alignment explanation
Indices: 36859040--36859161 Score: 140
Period size: 43 Copynumber: 2.8 Consensus size: 43
36859030 CTCATACAAT
* * *
36859040 GCCAACGTCCCAGACGTGGTCTTACATGTGATCACAAATCGAC
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGAC
* * * *
36859083 GCC-ACTGTCCCAGACAG-GGTCTTATACGTAAACACAAGTTGAT
1 GCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACAAATCGAC
*
36859126 GCCAACGTCCCAGACGTGGTCTTACACGAAAACACA
1 GCCAACGTCCCAGACGTGGTCTTACACGTAAACACA
36859162 TTTCGAAAAT
Statistics
Matches: 66, Mismatches: 9, Indels: 8
0.80 0.11 0.10
Matches are distributed among these distances:
42 3 0.05
43 60 0.91
44 3 0.05
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (43 bp):
GCCAACGTCCCAGACGTGGTCTTACACGTAAACACAAATCGAC
Found at i:36861434 original size:41 final size:41
Alignment explanation
Indices: 36861388--36861479 Score: 175
Period size: 41 Copynumber: 2.2 Consensus size: 41
36861378 ACCGGCACTT
36861388 AGCCTGCTAGGTTTAAAACCTGATTCAGTACACCGGCTTTA
1 AGCCTGCTAGGTTTAAAACCTGATTCAGTACACCGGCTTTA
*
36861429 AGCCTGCTAGGTTTAAAACTTGATTCAGTACACCGGCTTTA
1 AGCCTGCTAGGTTTAAAACCTGATTCAGTACACCGGCTTTA
36861470 AGCCTGCTAG
1 AGCCTGCTAG
36861480 ACTTATAGTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 50 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (41 bp):
AGCCTGCTAGGTTTAAAACCTGATTCAGTACACCGGCTTTA
Found at i:36861518 original size:42 final size:42
Alignment explanation
Indices: 36861459--36861605 Score: 231
Period size: 42 Copynumber: 3.5 Consensus size: 42
36861449 TGATTCAGTA
* * * *
36861459 CACCGGCTTTAAGCCTGCTAGACTTATAGTCTGAATTTACTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTTATTT
36861501 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTTATTT
** *
36861543 CACCGAAATTAAGCCTGCTAGACGTAAAGTCTAAATTTATTT
1 CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTTATTT
36861585 CACCGGCATTAAGCCTGCTAG
1 CACCGGCATTAAGCCTGCTAG
36861606 GTACTGAGCC
Statistics
Matches: 96, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 96 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.31
Consensus pattern (42 bp):
CACCGGCATTAAGCCTGCTAGACGTAAAGTCTGAATTTATTT
Found at i:36864450 original size:17 final size:17
Alignment explanation
Indices: 36864413--36864460 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 17
36864403 GAATTTAGAA
*
36864413 GAATTTT-TGAATTAGT
1 GAATTTTGTGATTTAGT
*
36864429 GAATTTTGTGATTTATT
1 GAATTTTGTGATTTAGT
36864446 GAATTTTGTGATTTA
1 GAATTTTGTGATTTA
36864461 AGTTAGACTG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
16 7 0.24
17 22 0.76
ACGTcount: A:0.27, C:0.00, G:0.19, T:0.54
Consensus pattern (17 bp):
GAATTTTGTGATTTAGT
Found at i:36879616 original size:7 final size:7
Alignment explanation
Indices: 36879604--36879629 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
36879594 TACAGGTGGG
36879604 TTGAATT
1 TTGAATT
36879611 TTGAATT
1 TTGAATT
36879618 TTGAATT
1 TTGAATT
36879625 TTGAA
1 TTGAA
36879630 CCGGATTTGA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (7 bp):
TTGAATT
Found at i:36882052 original size:2 final size:2
Alignment explanation
Indices: 36882045--36882069 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36882035 NNNNNNNNNN
36882045 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
36882070 TTTAAAATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36887682 original size:170 final size:170
Alignment explanation
Indices: 36887383--36887704 Score: 464
Period size: 170 Copynumber: 1.9 Consensus size: 170
36887373 ATCCTCTCAA
* *
36887383 TTTTCGATTTCTAGTATTTGGTTCTCCTTCCTTTGGTTGGGTTTGGTGGATTTCGTCTGTTTCAG
1 TTTTCGATTTCTAGTATTTGGTTCTCCTTCCTTTGGCTGGGTTTGGTGGATTTCATCTGTTTCAG
* * * * * *
36887448 AGTTTCTATCGAATGACTAAACTGAGTTATTAGGTTTGCTTTCTTTTATTCTATTCTTAGTTCTT
66 AGTTTCTATCGAAGGAATAAACTGAGTTATTAGGTCTACTTTCTCTTATTCTATTCTCAGTTCTT
* *
36887513 CTCATAGATCTGATTACAACAATTTAGGTTTATTGTGTTG
131 CTCATAGACCTGATCACAACAATTTAGGTTTATTGTGTTG
* * * *
36887553 TTTTCGGTTTCTGGTATTTGGTTCTCCTTCCTTTTGCTGGGTTTGGTGGATTTTATCTGTTTCAG
1 TTTTCGATTTCTAGTATTTGGTTCTCCTTCCTTTGGCTGGGTTTGGTGGATTTCATCTGTTTCAG
** * * * *
36887618 AGTTTCTATCGAAGGAATAAGTTGGGTTATTAGGTCTACTTTCTCTTCTTTTGTTCTCAGTTCTT
66 AGTTTCTATCGAAGGAATAAACTGAGTTATTAGGTCTACTTTCTCTTATTCTATTCTCAGTTCTT
36887683 CTCATAGACCTGATCACAACAA
131 CTCATAGACCTGATCACAACAA
36887705 AGGTCTTGTG
Statistics
Matches: 132, Mismatches: 20, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
170 132 1.00
ACGTcount: A:0.17, C:0.16, G:0.19, T:0.48
Consensus pattern (170 bp):
TTTTCGATTTCTAGTATTTGGTTCTCCTTCCTTTGGCTGGGTTTGGTGGATTTCATCTGTTTCAG
AGTTTCTATCGAAGGAATAAACTGAGTTATTAGGTCTACTTTCTCTTATTCTATTCTCAGTTCTT
CTCATAGACCTGATCACAACAATTTAGGTTTATTGTGTTG
Found at i:36890828 original size:25 final size:26
Alignment explanation
Indices: 36890800--36890848 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 26
36890790 CTAATTGACC
* *
36890800 ATTTTACCCTTTATAATC-CTTAAAA
1 ATTTCACCCTTAATAATCACTTAAAA
*
36890825 ATTTCATCCTTAATAATCACTTAA
1 ATTTCACCCTTAATAATCACTTAA
36890849 TTTTGTCAAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
25 15 0.75
26 5 0.25
ACGTcount: A:0.37, C:0.20, G:0.00, T:0.43
Consensus pattern (26 bp):
ATTTCACCCTTAATAATCACTTAAAA
Found at i:36897749 original size:40 final size:41
Alignment explanation
Indices: 36897687--36897803 Score: 116
Period size: 40 Copynumber: 2.9 Consensus size: 41
36897677 GTTTGGAACA
* * *
36897687 AAAGCGCCAC-AACAAATCGAGCATTAGCGGCGATTTA-GCC
1 AAAGCGCCGCTAA-AAATAGAGCATTAGCGGCGATTTATCCC
** *
36897727 AAAGCGCCGCTAAAGGTAGAGCATCAGCGGCGA-TTATCCC
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTATCCC
* * *
36897767 GAAGCGCCGCTAAAAATAG-GAATTAGCGGCGTTTTAT
1 AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTAT
36897804 ATAAAGCGCC
Statistics
Matches: 62, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
39 13 0.21
40 47 0.76
41 2 0.03
ACGTcount: A:0.32, C:0.24, G:0.26, T:0.18
Consensus pattern (41 bp):
AAAGCGCCGCTAAAAATAGAGCATTAGCGGCGATTTATCCC
Found at i:36897918 original size:41 final size:40
Alignment explanation
Indices: 36897861--36898181 Score: 302
Period size: 41 Copynumber: 7.8 Consensus size: 40
36897851 TTTTTTAAAC
*
36897861 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGAGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCG-GT
* * *
36897902 CTTTAGCGGCGTTTTTGTCTATGCGTCGCTAATGCTCGGAT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG-T
* * *
36897943 ATTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGT
* * *
36897984 CTTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-T-CGGT
*
36898026 CTTTAGCGGCGTTTTTATAC-AAGCGCCGCCAATGCTCGGAT
1 CTTTAGCGGCGTTTTTAT-CTAAGCGCCGCTAATGCTCGG-T
* * * * * * * *
36898067 CTTTAGCGACGTTTCTAACTGAGTGCCACTAATTCTCTTGT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGT
* * * * **
36898108 CTTCAGCGGCGTTTGTATCTAAGCGCCGCTAATGTATTGAC
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG-CTCGGT
** *
36898149 CTTTAGCGGCGTTTTTGCCGAAGCGCCGCTAAT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAAT
36898182 AGTAACAAAT
Statistics
Matches: 233, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
40 4 0.02
41 190 0.82
42 38 0.16
43 1 0.00
ACGTcount: A:0.15, C:0.24, G:0.25, T:0.36
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGT
Found at i:36898099 original size:124 final size:123
Alignment explanation
Indices: 36897861--36898164 Score: 335
Period size: 124 Copynumber: 2.5 Consensus size: 123
36897851 TTTTTTAAAC
* * *
36897861 CTTTAGCGGCGTTTTTGTCTAAGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTTGTCTATGC
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTTATCTAAGC
* * * * ** *
36897926 GTCGCTAATGCTCGGATATTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTCGGGT
66 GCCGCCAATGCTCGGATATTTAGCGACGTTTCTAACTATGCGCCACTAATGCTCGGGT
* * * *
36897984 CTTTAGCGGCGTTTTTTTCTATGCGCCGCTAATGCTTGGGGTCTTTAGCGGCGTTTTTATAC-AA
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-TCGAGTCTTTAGCGGCGTTTTTAT-CTAA
* * * **
36898048 GCGCCGCCAATGCTCGGATCTTTAGCGACGTTTCTAACTGA-GTGCCACTAATTCTCTTGT
64 GCGCCGCCAATGCTCGGATATTTAGCGACGTTTCTAACT-ATGCGCCACTAATGCTCGGGT
* * * * *
36898108 CTTCAGCGGCGTTTGTATCTAAGCGCCGCTAATGTATTGA-CCTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATG-CTCGAGTCTTTAGCGGCGTTTTT
36898165 GCCGAAGCGC
Statistics
Matches: 151, Mismatches: 26, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
123 49 0.32
124 100 0.66
125 2 0.01
ACGTcount: A:0.15, C:0.23, G:0.25, T:0.37
Consensus pattern (123 bp):
CTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGAGTCTTTAGCGGCGTTTTTATCTAAGC
GCCGCCAATGCTCGGATATTTAGCGACGTTTCTAACTATGCGCCACTAATGCTCGGGT
Found at i:36906862 original size:165 final size:165
Alignment explanation
Indices: 36906590--36906920 Score: 662
Period size: 165 Copynumber: 2.0 Consensus size: 165
36906580 GGTGTAGTGA
36906590 CGGTTTGAGTTTTGTCATCTCTAATTAATGAAGCAAAGTTGGGATGAAATTGAAAGGTTATAAAT
1 CGGTTTGAGTTTTGTCATCTCTAATTAATGAAGCAAAGTTGGGATGAAATTGAAAGGTTATAAAT
36906655 GATTTAAAACTTGATGTTAAATTAATGAAGTTTTGATCCGAAATTAAGGTAATGCATTCAGCCAT
66 GATTTAAAACTTGATGTTAAATTAATGAAGTTTTGATCCGAAATTAAGGTAATGCATTCAGCCAT
36906720 CTCTCCAAATCTTTGGTGTCTTTTACTGCCTTCTG
131 CTCTCCAAATCTTTGGTGTCTTTTACTGCCTTCTG
36906755 CGGTTTGAGTTTTGTCATCTCTAATTAATGAAGCAAAGTTGGGATGAAATTGAAAGGTTATAAAT
1 CGGTTTGAGTTTTGTCATCTCTAATTAATGAAGCAAAGTTGGGATGAAATTGAAAGGTTATAAAT
36906820 GATTTAAAACTTGATGTTAAATTAATGAAGTTTTGATCCGAAATTAAGGTAATGCATTCAGCCAT
66 GATTTAAAACTTGATGTTAAATTAATGAAGTTTTGATCCGAAATTAAGGTAATGCATTCAGCCAT
36906885 CTCTCCAAATCTTTGGTGTCTTTTACTGCCTTCTG
131 CTCTCCAAATCTTTGGTGTCTTTTACTGCCTTCTG
36906920 C
1 C
36906921 CATAAAAGAG
Statistics
Matches: 166, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
165 166 1.00
ACGTcount: A:0.30, C:0.14, G:0.19, T:0.37
Consensus pattern (165 bp):
CGGTTTGAGTTTTGTCATCTCTAATTAATGAAGCAAAGTTGGGATGAAATTGAAAGGTTATAAAT
GATTTAAAACTTGATGTTAAATTAATGAAGTTTTGATCCGAAATTAAGGTAATGCATTCAGCCAT
CTCTCCAAATCTTTGGTGTCTTTTACTGCCTTCTG
Found at i:36907009 original size:2 final size:2
Alignment explanation
Indices: 36907002--36907027 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
36906992 TAAGAAAATA
36907002 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
36907028 TTGATACAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:36908900 original size:20 final size:21
Alignment explanation
Indices: 36908877--36908922 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
36908867 TTTTTTTATA
* *
36908877 TTTTTAACAACTTTTA-AATT
1 TTTTTAAAAAATTTTACAATT
*
36908897 TTTTAAAAAAATTTTACAATT
1 TTTTTAAAAAATTTTACAATT
36908918 TTTTT
1 TTTTT
36908923 GAATTTTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (21 bp):
TTTTTAAAAAATTTTACAATT
Found at i:36911589 original size:2 final size:2
Alignment explanation
Indices: 36911582--36911611 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
36911572 TACCCTAGCT
*
36911582 TA TA TA TA TA TA TA TA GA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
36911612 GGCTTAGTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Found at i:36918010 original size:21 final size:21
Alignment explanation
Indices: 36917975--36918015 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
36917965 ATCTATAAAG
** *
36917975 TAAAAATAATTGAAATAAAAA
1 TAAAAATAAAAGAAACAAAAA
36917996 TAAAAATAAAAGAAACAAAA
1 TAAAAATAAAAGAAACAAAA
36918016 TTTAATTAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.17
Consensus pattern (21 bp):
TAAAAATAAAAGAAACAAAAA
Found at i:36924274 original size:6 final size:6
Alignment explanation
Indices: 36924239--36924382 Score: 238
Period size: 6 Copynumber: 23.8 Consensus size: 6
36924229 GTCTACTTGC
*
36924239 AAAAT- AAAAT- AAAATA GAAGGAATA TAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA -AA--AATA AAAATA AAAATA AAAATA AAAATA
36924288 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
36924336 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT
36924383 TGTAATTTTT
Statistics
Matches: 133, Mismatches: 2, Indels: 7
0.94 0.01 0.05
Matches are distributed among these distances:
5 10 0.08
6 116 0.87
7 2 0.02
8 1 0.01
9 4 0.03
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:36924279 original size:1 final size:1
Alignment explanation
Indices: 36924269--36924381 Score: 64
Period size: 1 Copynumber: 113.0 Consensus size: 1
36924259 GAATATAAAT
* * * * * * * * * *
36924269 AAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
* * * * * * * *
36924334 TAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
36924382 TTGTAATTTT
Statistics
Matches: 76, Mismatches: 36, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
1 76 1.00
ACGTcount: A:0.84, C:0.00, G:0.00, T:0.16
Consensus pattern (1 bp):
A
Found at i:36935058 original size:18 final size:19
Alignment explanation
Indices: 36935010--36935058 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
36935000 TGAAAAAAAA
* *
36935010 TATT-TTTAAATTTCCTAT
1 TATTATTTAATTTTACTAT
*
36935028 TATTA-TTATTTTTACTAT
1 TATTATTTAATTTTACTAT
36935046 T-TTATTTAATTTT
1 TATTATTTAATTTT
36935059 TGTTTTATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 3 0.12
18 22 0.88
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.67
Consensus pattern (19 bp):
TATTATTTAATTTTACTAT
Found at i:36935338 original size:50 final size:50
Alignment explanation
Indices: 36935280--36935376 Score: 194
Period size: 50 Copynumber: 1.9 Consensus size: 50
36935270 AGTAGAGGGG
36935280 AGGAAAATATAAATTGATTCTAATTTGCTTATCTGTCATCGCTATTTACT
1 AGGAAAATATAAATTGATTCTAATTTGCTTATCTGTCATCGCTATTTACT
36935330 AGGAAAATATAAATTGATTCTAATTTGCTTATCTGTCATCGCTATTT
1 AGGAAAATATAAATTGATTCTAATTTGCTTATCTGTCATCGCTATTT
36935377 TTGCATGTTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 47 1.00
ACGTcount: A:0.32, C:0.13, G:0.12, T:0.42
Consensus pattern (50 bp):
AGGAAAATATAAATTGATTCTAATTTGCTTATCTGTCATCGCTATTTACT
Found at i:36935593 original size:13 final size:13
Alignment explanation
Indices: 36935571--36935601 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36935561 TCTTTTCAAC
36935571 AAAAAAAAAAAAT
1 AAAAAAAAAAAAT
*
36935584 AAAAACAAAAAAT
1 AAAAAAAAAAAAT
36935597 AAAAA
1 AAAAA
36935602 TACTCCTCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.90, C:0.03, G:0.00, T:0.06
Consensus pattern (13 bp):
AAAAAAAAAAAAT
Found at i:36939021 original size:33 final size:32
Alignment explanation
Indices: 36938984--36939144 Score: 135
Period size: 33 Copynumber: 4.8 Consensus size: 32
36938974 ACATTCCTAG
* **
36938984 TGCCATAACCCAATTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAGAA
* * *
36939017 TGCCATAGCCCAGCTATAGTCTTACATATAAACA
1 TGCCATAGCCCAGCTATGGTCTTACAT-CAGA-A
* * * * *
36939051 TTGCCAT-GCTCCAACCATGGTCTTACTTTCATAG
1 -TGCCATAGC-CCAGCTATGGTCTTAC-ATCAGAA
* *
36939085 TGCCATAACCCAGTTATGGTCTTATCATCAGAA
1 TGCCATAGCCCAGCTATGGTCTTA-CATCAGAA
36939118 TGCCATAGCCCAGCTATGGTCTTACAT
1 TGCCATAGCCCAGCTATGGTCTTACAT
36939145 ATACACACTG
Statistics
Matches: 99, Mismatches: 22, Indels: 15
0.73 0.16 0.11
Matches are distributed among these distances:
32 6 0.06
33 66 0.67
34 5 0.05
35 21 0.21
36 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (32 bp):
TGCCATAGCCCAGCTATGGTCTTACATCAGAA
Found at i:36939165 original size:101 final size:101
Alignment explanation
Indices: 36938972--36939212 Score: 392
Period size: 101 Copynumber: 2.4 Consensus size: 101
36938962 AATTCATCAT
*
36938972 TTACATTCCTAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATAGT
1 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATAGT
* * *
36939037 CTTACATATAAACATTGCCATGCTCCAACCATGGTC
66 CTTACATATAAACACTGACACGCTCCAACCATGGTC
* * *
36939073 TTACTTTCATAGTGCCATAACCCAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATGGT
1 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATAGT
* *
36939138 CTTACATATACACACTGACACGGTCCAACCATGGTC
66 CTTACATATAAACACTGACACGCTCCAACCATGGTC
*
36939174 TTACGTTCATAGTGCCATAACCCAATTATGGTCTTATCA
1 TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCA
36939213 GTCAATTCAT
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
101 129 1.00
ACGTcount: A:0.29, C:0.27, G:0.14, T:0.30
Consensus pattern (101 bp):
TTACATTCATAGTGCCATAACCCAATTATGGTCTTATCATCAGAATGCCATAGCCCAGCTATAGT
CTTACATATAAACACTGACACGCTCCAACCATGGTC
Found at i:36941123 original size:12 final size:13
Alignment explanation
Indices: 36941101--36941134 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
36941091 GTTTTGGGGT
*
36941101 TTTAAGGTTAGGG
1 TTTAGGGTTAGGG
36941114 -TTAGGGTTAGGG
1 TTTAGGGTTAGGG
36941126 TTTAGGGTT
1 TTTAGGGTT
36941135 TTTAGGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.18, C:0.00, G:0.41, T:0.41
Consensus pattern (13 bp):
TTTAGGGTTAGGG
Found at i:36941543 original size:125 final size:125
Alignment explanation
Indices: 36941321--36941733 Score: 637
Period size: 125 Copynumber: 3.3 Consensus size: 125
36941311 ATTTATTAAG
* * * *
36941321 GAAATCACTCCCACATGGACGCGTTTTTGATACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAT
1 GAAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* *
36941386 GTTTCTGAGCAAATAGTATAAAAAACACTTCAAGCAGGATGCTTTATGAGAAGAATTTTT
66 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
* * * * *
36941446 GAAATCGCTCCCGCGTGGACACGCTTTTGCTACAATAGGTCTTGAAAAAATAATTTCGAGTTGAC
1 GAAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* *
36941511 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGTTTTATCAGAAGGATTTTT
66 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
* * *
36941571 GAAATCGGTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
* * *
36941636 GTTTTTGAGCAAATAGTATAAAAAATGCTTCAAGTAGGATGCTTTATCAGAAGAATTTTT
66 GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
* *
36941696 GAAATCGCTACCACATGGATGCGCTTTTGCTACAGTAG
1 GAAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAG
36941734 CATGTTTGGG
Statistics
Matches: 260, Mismatches: 28, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
125 260 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.31
Consensus pattern (125 bp):
GAAATCGCTCCCACATGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCGAGTTGAC
GTTTCTGAGCAAATAGTATAAAAAACGCTTCAAGCAGGATGCTTTATCAGAAGAATTTTT
Found at i:36944821 original size:49 final size:49
Alignment explanation
Indices: 36944767--36944887 Score: 233
Period size: 49 Copynumber: 2.5 Consensus size: 49
36944757 TAAGAATATT
36944767 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
*
36944816 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAATTA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
36944865 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
36944888 TAATATAAAC
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
49 71 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:36944911 original size:49 final size:48
Alignment explanation
Indices: 36944767--36944901 Score: 165
Period size: 49 Copynumber: 2.8 Consensus size: 48
36944757 TAAGAATATT
36944767 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCA-AAA-TA
1 AACTATTTTGTATTTTATTACAT---ATAATATCAAAATATTCACAAATTA
36944816 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATT--CAAATTA
1 AACTATTTTGTATTTTATTACAT---ATAATATCAAAATATTCACAAATTA
*
36944865 AACTATTTTGTATTTTATTACAT-TAATAT-AAACTATT
1 AACTATTTTGTATTTTATTACATATAATATCAAAATATT
36944902 TTGCACAAAT
Statistics
Matches: 83, Mismatches: 1, Indels: 9
0.89 0.01 0.10
Matches are distributed among these distances:
44 7 0.08
45 6 0.07
48 3 0.04
49 67 0.81
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (48 bp):
AACTATTTTGTATTTTATTACATATAATATCAAAATATTCACAAATTA
Found at i:36945051 original size:21 final size:21
Alignment explanation
Indices: 36945027--36945066 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
36945017 TTGTGGTTGG
36945027 TCCGGT-GGAGATTCTGGTTCA
1 TCCGGTAGGAGA-TCTGGTTCA
*
36945048 TCCGGTAGGGGATCTGGTT
1 TCCGGTAGGAGATCTGGTT
36945067 GTTGATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.12, C:0.17, G:0.38, T:0.33
Consensus pattern (21 bp):
TCCGGTAGGAGATCTGGTTCA
Found at i:36945349 original size:18 final size:18
Alignment explanation
Indices: 36945308--36945350 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
36945298 GATTAGAAAA
* * *
36945308 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
*
36945326 ATGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
36945344 AGGATAC
1 AGGATAC
36945351 GCACCTGGCA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.44, C:0.09, G:0.26, T:0.21
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:36947187 original size:11 final size:11
Alignment explanation
Indices: 36947173--36947259 Score: 51
Period size: 11 Copynumber: 8.3 Consensus size: 11
36947163 GAGAAAGTTA
36947173 AGAGGAAATTG
1 AGAGGAAATTG
*
36947184 AGAGCAAATTG
1 AGAGGAAATTG
**
36947195 AGATTAAA-T-
1 AGAGGAAATTG
* *
36947204 A-TGG-ATTTG
1 AGAGGAAATTG
36947213 AGA-GAAATTTG
1 AGAGGAAA-TTG
36947224 -GAAGGAAATTG
1 AG-AGGAAATTG
* *
36947235 AGAGCAATTTG
1 AGAGGAAATTG
36947246 AGAGGAAATTG
1 AGAGGAAATTG
36947257 AGA
1 AGA
36947260 AAATAATTGA
Statistics
Matches: 55, Mismatches: 13, Indels: 16
0.65 0.15 0.19
Matches are distributed among these distances:
7 1 0.02
8 1 0.02
9 3 0.05
10 3 0.05
11 42 0.76
12 5 0.09
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (11 bp):
AGAGGAAATTG
Found at i:36947235 original size:22 final size:22
Alignment explanation
Indices: 36947210--36947272 Score: 76
Period size: 22 Copynumber: 2.8 Consensus size: 22
36947200 AAATATGGAT
36947210 TTGAGAGAAATTTG-GAAGGAAA
1 TTGAGAGAAATTTGAG-AGGAAA
*
36947232 TTGAGAGCAATTTGAGAGGAAA
1 TTGAGAGAAATTTGAGAGGAAA
36947254 TTGAGA-AAATAATTGAGAG
1 TTGAGAGAAAT--TTGAGAG
36947273 AGTATTAATT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
21 3 0.08
22 25 0.69
23 8 0.22
ACGTcount: A:0.44, C:0.02, G:0.30, T:0.24
Consensus pattern (22 bp):
TTGAGAGAAATTTGAGAGGAAA
Found at i:36948801 original size:28 final size:28
Alignment explanation
Indices: 36948768--36948823 Score: 85
Period size: 28 Copynumber: 2.0 Consensus size: 28
36948758 GCCCAAATTT
*
36948768 TCGAAGAGATTATTATAGAAACCAAACC
1 TCGAAGAGATTATGATAGAAACCAAACC
* *
36948796 TCGAAGAGATTATGCTAGAAATCAAACC
1 TCGAAGAGATTATGATAGAAACCAAACC
36948824 GACTTTTAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.45, C:0.18, G:0.16, T:0.21
Consensus pattern (28 bp):
TCGAAGAGATTATGATAGAAACCAAACC
Found at i:36961903 original size:16 final size:17
Alignment explanation
Indices: 36961874--36961906 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
36961864 CAAATTTTTA
36961874 AAAATATTAATTTAATAT
1 AAAATATT-ATTTAATAT
36961892 AAAATATT-TTTAATA
1 AAAATATTATTTAATA
36961907 CTATAATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
AAAATATTATTTAATAT
Found at i:36961954 original size:16 final size:16
Alignment explanation
Indices: 36961924--36961973 Score: 55
Period size: 16 Copynumber: 3.0 Consensus size: 16
36961914 TATATATGTA
36961924 TAATAAAAATATAAAAT
1 TAAT-AAAATATAAAAT
* *
36961941 TAATAAAATTTAAATT
1 TAATAAAATATAAAAT
*
36961957 TAATAACAACATAAAAT
1 TAATAA-AATATAAAAT
36961974 ATATAATGAC
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
16 16 0.59
17 11 0.41
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (16 bp):
TAATAAAATATAAAAT
Found at i:36962682 original size:18 final size:20
Alignment explanation
Indices: 36962671--36962707 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36962661 TATATAATGT
36962671 ACTACTATTATATATATATA
1 ACTACTATTATATATATATA
*
36962691 ACTATTATTATAT-TATA
1 ACTACTATTATATATATA
36962708 GATTATAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
ACTACTATTATATATATATA
Found at i:36963722 original size:18 final size:20
Alignment explanation
Indices: 36963711--36963747 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
36963701 TATATAATGT
36963711 ACTACTATTATATATATATA
1 ACTACTATTATATATATATA
*
36963731 ACTATTATTATAT-TATA
1 ACTACTATTATATATATA
36963748 GATTATAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 4 0.25
20 12 0.75
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
ACTACTATTATATATATATA
Found at i:36964281 original size:19 final size:17
Alignment explanation
Indices: 36964253--36964296 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
36964243 CTAGTAATAC
*
36964253 ATAAAATATTATTATCTTA
1 ATAAATTATTATT-T-TTA
36964272 ATAAATTATTATTTTTA
1 ATAAATTATTATTTTTA
*
36964289 TTAAATTA
1 ATAAATTA
36964297 GATTTTGAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 10 0.43
18 1 0.04
19 12 0.52
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.52
Consensus pattern (17 bp):
ATAAATTATTATTTTTA
Found at i:36964475 original size:14 final size:15
Alignment explanation
Indices: 36964456--36964488 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
36964446 TATATTTGAG
36964456 TTTTAG-TATAAATA
1 TTTTAGATATAAATA
36964470 TTTTAGAATATAAATA
1 TTTTAG-ATATAAATA
36964486 TTT
1 TTT
36964489 GGTTTATAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
16 11 0.65
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (15 bp):
TTTTAGATATAAATA
Found at i:36966576 original size:41 final size:43
Alignment explanation
Indices: 36966530--36966614 Score: 120
Period size: 41 Copynumber: 2.0 Consensus size: 43
36966520 AGGGTAAATC
* * *
36966530 CAACAACTCAAGTTTATCTTCT-C-CTTTTTAAATTCATTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCATTTTT
*
36966571 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCTTTTTT
1 CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCATTTTT
36966614 C
1 C
36966615 TAGGATAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
41 19 0.50
42 1 0.03
43 18 0.47
ACGTcount: A:0.27, C:0.25, G:0.02, T:0.46
Consensus pattern (43 bp):
CAACAACCCAAGATTATCTACTCCTCTTTTTAAATTCATTTTT
Found at i:36969591 original size:13 final size:13
Alignment explanation
Indices: 36969573--36969603 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
36969563 CTGTTTTTAA
36969573 AAAATAATATTTT
1 AAAATAATATTTT
*
36969586 AAAATAGTATTTT
1 AAAATAATATTTT
36969599 AAAAT
1 AAAAT
36969604 TTTTTTTTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (13 bp):
AAAATAATATTTT
Found at i:36970827 original size:107 final size:108
Alignment explanation
Indices: 36970564--36970830 Score: 290
Period size: 107 Copynumber: 2.4 Consensus size: 108
36970554 AAAAAATTGA
* ** * **
36970564 TGCTGGCCA-GAAGATGGCCGACACCAAGTACAATTTTCGGTTCCCAAAGCACATTTCTTTTGCT
1 TGCTGGCCATGTA-ATGGCCGACACCAAGTACAATTTTCGACTCCCAATG--CATTT-TTTTATT
* * *
36970628 TTGGGACACTGATGGCCAGCACCAGTGTATTTAAAAGAAATTTTTGGG
62 TTGGAACACTGATGGCCAGCACCAGTGTATTTAAAAGAAA-TATTAGG
*
36970676 TGCTGGTCATGTAATGGCCGACACCAAGTACAATTTTCGACTCCCAATGCATTTTTTTATTTTGG
1 TGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGACTCCCAATGCATTTTTTTATTTTGG
*
36970741 AACACTGATGGCC-GACACCAGTGTGTTTTAAAA-AAA-ATTAGG
66 AACACTGATGGCCAG-CACCAGTGT-ATTTAAAAGAAATATTAGG
* ** * * *
36970783 TGCTGGCCATGTAATGGTCGGTACCAAGTACATTTTTTGCCTCCCAAT
1 TGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGACTCCCAAT
36970831 ACAATATTTT
Statistics
Matches: 134, Mismatches: 18, Indels: 11
0.82 0.11 0.07
Matches are distributed among these distances:
107 45 0.34
108 1 0.01
109 33 0.25
110 12 0.09
112 41 0.31
113 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (108 bp):
TGCTGGCCATGTAATGGCCGACACCAAGTACAATTTTCGACTCCCAATGCATTTTTTTATTTTGG
AACACTGATGGCCAGCACCAGTGTATTTAAAAGAAATATTAGG
Found at i:36973575 original size:57 final size:57
Alignment explanation
Indices: 36973511--36973643 Score: 266
Period size: 57 Copynumber: 2.3 Consensus size: 57
36973501 GCATTTATAG
36973511 TAAATATAAATTGTTTTATTTCTCGTTTAAAAAAGAATTTAAATGAATATTTAAAAT
1 TAAATATAAATTGTTTTATTTCTCGTTTAAAAAAGAATTTAAATGAATATTTAAAAT
36973568 TAAATATAAATTGTTTTATTTCTCGTTTAAAAAAGAATTTAAATGAATATTTAAAAT
1 TAAATATAAATTGTTTTATTTCTCGTTTAAAAAAGAATTTAAATGAATATTTAAAAT
36973625 TAAATATAAATTGTTTTAT
1 TAAATATAAATTGTTTTAT
36973644 AGTAAATATA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 76 1.00
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (57 bp):
TAAATATAAATTGTTTTATTTCTCGTTTAAAAAAGAATTTAAATGAATATTTAAAAT
Found at i:36973650 original size:21 final size:21
Alignment explanation
Indices: 36973625--36973664 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
36973615 TATTTAAAAT
36973625 TAAATATAAATTGTTTTATAG
1 TAAATATAAATTGTTTTATAG
36973646 TAAATATAAATTGTTTTAT
1 TAAATATAAATTGTTTTAT
36973665 TTCTCGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.07, T:0.50
Consensus pattern (21 bp):
TAAATATAAATTGTTTTATAG
Found at i:36974085 original size:11 final size:11
Alignment explanation
Indices: 36974065--36974107 Score: 61
Period size: 11 Copynumber: 3.9 Consensus size: 11
36974055 AATTTTTTTT
36974065 CATTTCATTTC
1 CATTTCATTTC
*
36974076 CATTTTATTT-
1 CATTTCATTTC
36974086 CATTTACATTTC
1 CATTT-CATTTC
36974098 CATTTCATTT
1 CATTTCATTT
36974108 AAATTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 5 0.18
11 18 0.64
12 5 0.18
ACGTcount: A:0.21, C:0.21, G:0.00, T:0.58
Consensus pattern (11 bp):
CATTTCATTTC
Found at i:36974095 original size:6 final size:5
Alignment explanation
Indices: 36974062--36974107 Score: 56
Period size: 5 Copynumber: 8.6 Consensus size: 5
36974052 TCAAATTTTT
*
36974062 TTTCA TTTCA TTTCCA TTTTA TTTCA TTTACA TTTCCA TTTCA TTT
1 TTTCA TTTCA TTT-CA TTTCA TTTCA TTT-CA TTT-CA TTTCA TTT
36974108 AAATTTAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
5 21 0.58
6 15 0.42
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.61
Consensus pattern (5 bp):
TTTCA
Found at i:36974095 original size:22 final size:21
Alignment explanation
Indices: 36974056--36974107 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 21
36974046 GTCCTTTCAA
*
36974056 ATTTTTTTTCATTTCATTTCC
1 ATTTTATTTCATTTCATTTCC
36974077 ATTTTATTTCATTTACATTTCC
1 ATTTTATTTCATTT-CATTTCC
*
36974099 ATTTCATTT
1 ATTTTATTT
36974108 AAATTTAATT
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.19, C:0.17, G:0.00, T:0.63
Consensus pattern (21 bp):
ATTTTATTTCATTTCATTTCC
Found at i:36974143 original size:17 final size:18
Alignment explanation
Indices: 36974123--36974166 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
36974113 TAATTATTTC
36974123 TCATTTCAAATTTT-TTT
1 TCATTTCAAATTTTGTTT
**
36974140 TCATTTCAGTTTTTGTTT
1 TCATTTCAAATTTTGTTT
*
36974158 TCGTTTCAA
1 TCATTTCAA
36974167 TTTATAATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 12 0.55
18 10 0.45
ACGTcount: A:0.18, C:0.14, G:0.07, T:0.61
Consensus pattern (18 bp):
TCATTTCAAATTTTGTTT
Found at i:36974220 original size:5 final size:5
Alignment explanation
Indices: 36974191--36974273 Score: 53
Period size: 5 Copynumber: 15.6 Consensus size: 5
36974181 TCATTTAAAC
* * * *
36974191 TTTCA TTCCA TTTCA TAATCA --TCA TTTCA TATTCA TTACAAA TTACA
1 TTTCA TTTCA TTTCA T-TTCA TTTCA TTTCA T-TTCA TTTC--A TTTCA
36974238 TTTCA TTTCA TTTCA TATTCA TTTAACA TTTCA TTT
1 TTTCA TTTCA TTTCA T-TTCA TTT--CA TTTCA TTT
36974274 AATTATTTTT
Statistics
Matches: 64, Mismatches: 5, Indels: 18
0.74 0.06 0.21
Matches are distributed among these distances:
3 3 0.05
5 38 0.59
6 13 0.20
7 10 0.16
ACGTcount: A:0.30, C:0.19, G:0.00, T:0.51
Consensus pattern (5 bp):
TTTCA
Found at i:36974260 original size:11 final size:11
Alignment explanation
Indices: 36974212--36974261 Score: 66
Period size: 11 Copynumber: 4.5 Consensus size: 11
36974202 TTCATAATCA
36974212 TCATTTCATAT
1 TCATTTCATAT
* *
36974223 TCATTACAAAT
1 TCATTTCATAT
36974234 TACATTTCAT-T
1 T-CATTTCATAT
36974245 TCATTTCATAT
1 TCATTTCATAT
36974256 TCATTT
1 TCATTT
36974262 AACATTTCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
10 8 0.24
11 19 0.58
12 6 0.18
ACGTcount: A:0.30, C:0.18, G:0.00, T:0.52
Consensus pattern (11 bp):
TCATTTCATAT
Found at i:36974287 original size:18 final size:20
Alignment explanation
Indices: 36974266--36974305 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
36974256 TCATTTAACA
36974266 TTTCATTT-AA-TTATTTTT
1 TTTCATTTAAATTTATTTTT
36974284 TTTCATTTAAATTTATTTTT
1 TTTCATTTAAATTTATTTTT
36974304 TT
1 TT
36974306 CCTAACATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 2 0.10
20 10 0.50
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (20 bp):
TTTCATTTAAATTTATTTTT
Found at i:36974290 original size:23 final size:23
Alignment explanation
Indices: 36974238--36974291 Score: 56
Period size: 23 Copynumber: 2.3 Consensus size: 23
36974228 ACAAATTACA
*
36974238 TTTCATTTCATTTCATATTCATT
1 TTTCATTTCATTTAATATTCATT
** *
36974261 TAACATTTCATTTAATTATT-TTT
1 TTTCATTTCATTTAA-TATTCATT
36974284 TTTCATTT
1 TTTCATTT
36974292 AAATTTATTT
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
23 20 0.83
24 4 0.17
ACGTcount: A:0.24, C:0.13, G:0.00, T:0.63
Consensus pattern (23 bp):
TTTCATTTCATTTAATATTCATT
Found at i:36974463 original size:21 final size:22
Alignment explanation
Indices: 36974437--36974478 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
36974427 TATCAAGGGC
36974437 ATTTAAA-ATTTT-TCATATTTT
1 ATTTAAATATTTTCTCA-ATTTT
36974458 ATTTAAATATTTTCTCAATTT
1 ATTTAAATATTTTCTCAATTT
36974479 AAATATCATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 7 0.37
22 9 0.47
23 3 0.16
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.60
Consensus pattern (22 bp):
ATTTAAATATTTTCTCAATTTT
Found at i:36974703 original size:17 final size:17
Alignment explanation
Indices: 36974681--36974723 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
36974671 CATTTTTTTT
**
36974681 CATTTCATTGGTATTTC
1 CATTTCATTGCCATTTC
*
36974698 CATTTCATTTCCATTTC
1 CATTTCATTGCCATTTC
36974715 CATTTCATT
1 CATTTCATT
36974724 TAAATTATCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.19, C:0.23, G:0.05, T:0.53
Consensus pattern (17 bp):
CATTTCATTGCCATTTC
Found at i:36974707 original size:11 final size:12
Alignment explanation
Indices: 36974693--36974724 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
36974683 TTTCATTGGT
36974693 ATTTCCATTT-C
1 ATTTCCATTTCC
36974704 ATTTCCATTTCC
1 ATTTCCATTTCC
36974716 ATTT-CATTT
1 ATTTCCATTT
36974725 AAATTATCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 15 0.75
12 5 0.25
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (12 bp):
ATTTCCATTTCC
Found at i:36974712 original size:6 final size:6
Alignment explanation
Indices: 36974693--36974724 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
36974683 TTTCATTGGT
36974693 ATTTCC ATTT-C ATTTCC ATTTCC ATTT-C ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
36974725 AAATTATCTT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
5 10 0.40
6 15 0.60
ACGTcount: A:0.19, C:0.25, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:36974742 original size:28 final size:28
Alignment explanation
Indices: 36974711--36974786 Score: 74
Period size: 28 Copynumber: 2.9 Consensus size: 28
36974701 TTCATTTCCA
36974711 TTTCCATTTCATTTAAATTATCTTTTTT
1 TTTCCATTTCATTTAAATTATCTTTTTT
**
36974739 TTT-C----CATTTAAATT-TAATTTTT
1 TTTCCATTTCATTTAAATTATCTTTTTT
*
36974761 TTCCTCATTTCATTTAAATTATCTTT
1 TTTC-CATTTCATTTAAATTATCTTT
36974787 CTTCCCATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 13
0.67 0.09 0.24
Matches are distributed among these distances:
22 8 0.22
23 10 0.28
24 1 0.03
27 1 0.03
28 13 0.36
29 3 0.08
ACGTcount: A:0.24, C:0.14, G:0.00, T:0.62
Consensus pattern (28 bp):
TTTCCATTTCATTTAAATTATCTTTTTT
Found at i:36974746 original size:23 final size:23
Alignment explanation
Indices: 36974720--36974834 Score: 71
Period size: 23 Copynumber: 4.9 Consensus size: 23
36974710 ATTTCCATTT
36974720 CATTTAAATTATCTTTTTTTTTC
1 CATTTAAATTATCTTTTTTTTTC
*
36974743 CATTTAAATTTAAT-TTTTTTCCTCATTT
1 CATTTAAA-TT-ATCTTTTTT--T--TTC
* *
36974771 CATTTAAATTATC--TTTCTTCC
1 CATTTAAATTATCTTTTTTTTTC
*
36974792 CATTTTAATT-T-TTTTTGTCATTT-
1 CATTTAAATTATCTTTTT-T--TTTC
36974815 CATTTAAATTATCTTTTTTT
1 CATTTAAATTATCTTTTTTT
36974835 ATATTTAAAT
Statistics
Matches: 70, Mismatches: 8, Indels: 29
0.65 0.07 0.27
Matches are distributed among these distances:
20 1 0.01
21 13 0.19
22 1 0.01
23 18 0.26
24 12 0.17
25 10 0.14
26 3 0.04
27 2 0.03
28 10 0.14
ACGTcount: A:0.23, C:0.14, G:0.01, T:0.63
Consensus pattern (23 bp):
CATTTAAATTATCTTTTTTTTTC
Found at i:36974831 original size:27 final size:26
Alignment explanation
Indices: 36974801--36974888 Score: 71
Period size: 26 Copynumber: 3.5 Consensus size: 26
36974791 CCATTTTAAT
36974801 TTTTTTTGTCATTTCATTTAAATTATC
1 TTTTTTT-TCATTTCATTTAAATTATC
36974828 -TTTTTTT-A--T-ATTTAAATTTAAT-
1 TTTTTTTTCATTTCATTTAAA-TT-ATC
* *
36974850 TTTTTTCTCATTTCATTTAGATTATC
1 TTTTTTTTCATTTCATTTAAATTATC
* *
36974876 TTTCTTTCCATTT
1 TTTTTTTTCATTT
36974889 TAATTTACGT
Statistics
Matches: 48, Mismatches: 5, Indels: 17
0.69 0.07 0.24
Matches are distributed among these distances:
21 7 0.15
22 3 0.06
23 8 0.17
24 2 0.04
25 3 0.06
26 19 0.40
27 6 0.12
ACGTcount: A:0.22, C:0.11, G:0.02, T:0.65
Consensus pattern (26 bp):
TTTTTTTTCATTTCATTTAAATTATC
Found at i:36974874 original size:92 final size:94
Alignment explanation
Indices: 36974715--36974894 Score: 310
Period size: 92 Copynumber: 1.9 Consensus size: 94
36974705 TTTCCATTTC
*
36974715 CATTTCATTTAAATTATCTTTTTTTTTCCATTTAAATTTAATTTTTTTCCTCATTTCATTTAAAT
1 CATTTCATTTAAATTATCTTTTTTTAT-CATTTAAATTTAATTTTTTTCCTCATTTCATTTAAAT
36974780 TATCTTTCTTCCCATTTTAATTTTTTTTGT
65 TATCTTTCTTCCCATTTTAATTTTTTTTGT
*
36974810 CATTTCATTTAAATTATCTTTTTTTAT-ATTTAAATTTAATTTTTTT-CTCATTTCATTTAGATT
1 CATTTCATTTAAATTATCTTTTTTTATCATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATT
*
36974873 ATCTTTCTTTCCATTTTAATTT
66 ATCTTTCTTCCCATTTTAATTT
36974895 ACGTTTTTTA
Statistics
Matches: 82, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
92 37 0.45
93 19 0.23
95 26 0.32
ACGTcount: A:0.23, C:0.13, G:0.01, T:0.62
Consensus pattern (94 bp):
CATTTCATTTAAATTATCTTTTTTTATCATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATT
ATCTTTCTTCCCATTTTAATTTTTTTTGT
Found at i:36974903 original size:49 final size:48
Alignment explanation
Indices: 36974711--36974895 Score: 227
Period size: 48 Copynumber: 3.9 Consensus size: 48
36974701 TTCATTTCCA
*
36974711 TTTC-CATTTCATTTAAATTATCTTTTTTTTTCCATTTAAATTTAATTTT
1 TTTCTCATTTCATTTAAATTATC--TTTCTTTCCATTTAAATTTAATTTT
* *
36974760 TTTCCTCATTTCATTTAAATTATCTTTCTTCCCATTTTAA--T--TTTT
1 TTT-CTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTT
* * **
36974805 TTTGTCATTTCATTTAAATTATCTTTTTTTATATTTAAATTTAATTTT
1 TTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTT
* *
36974853 TTTCTCATTTCATTTAGATTATCTTTCTTTCCATTTTAATTTA
1 TTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTA
36974896 CGTTTTTTAC
Statistics
Matches: 115, Mismatches: 15, Indels: 13
0.80 0.10 0.09
Matches are distributed among these distances:
44 30 0.26
45 7 0.06
46 1 0.01
47 1 0.01
48 41 0.36
49 16 0.14
50 1 0.01
51 18 0.16
ACGTcount: A:0.23, C:0.14, G:0.01, T:0.62
Consensus pattern (48 bp):
TTTCTCATTTCATTTAAATTATCTTTCTTTCCATTTAAATTTAATTTT
Found at i:36974933 original size:92 final size:92
Alignment explanation
Indices: 36974744--36974933 Score: 233
Period size: 92 Copynumber: 2.1 Consensus size: 92
36974734 TTTTTTTTCC
**
36974744 ATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTTTTTTG
1 ATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTCGTTTG
* * **
36974809 TCATTTCATTTAAATTATCTTTTTTTAT
66 T-ATTACATTTAAATTATCTCTCATTAT
* *
36974837 ATTTAAATTTAATTTTTTT-CTCATTTCATTTAGATTATCTTTCTTTCCATTTTAATTTACGTTT
1 ATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTT-CGTTT
* *
36974901 -T-TTACATATTAATTTTTCTCTCATTAT
65 GTATTACAT-TTAAATTATCTCTCATTAT
36974928 AATTTA
1 -ATTTA
36974934 TTTCATTTAA
Statistics
Matches: 84, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
90 5 0.06
91 14 0.17
92 43 0.51
93 22 0.26
ACGTcount: A:0.25, C:0.13, G:0.02, T:0.61
Consensus pattern (92 bp):
ATTTAAATTTAATTTTTTTCCTCATTTCATTTAAATTATCTTTCTTCCCATTTTAATTTCGTTTG
TATTACATTTAAATTATCTCTCATTAT
Found at i:36977999 original size:108 final size:108
Alignment explanation
Indices: 36977869--36978132 Score: 284
Period size: 109 Copynumber: 2.4 Consensus size: 108
36977859 TTTTATTAAA
* * * *
36977869 TGTACTTGGTGCCGGTCGTTACATGGCTAGCACCTAAATTTTTTTTTAAATACACTGGTGCT-GA
1 TGTACTTGGTGCCGGCCATTACATGGCCAGCACC-AAATTTTTTTTTAAATACACTAGT-CTCGA
* * * **
36977933 CCGTCAGTGTTCCAAAATAAAAAAA-TGCATTGGGAGTCGAAAAT
64 CCATCAGTGTCCCAAAATAAAAAAAGTGCATTGAGAACCGAAAAT
* * *
36977977 TGTATTTGGTGCCGGCCATTACATGACCAGCACCCAAATTTTTTTTTTAAATACACTAGTCTCGG
1 TGTACTTGGTGCCGGCCATTACATGGCCAGCA-CCAAA-TTTTTTTTTAAATACACTAGTCTCGA
* * *
36978042 TCATCAGTGTCCCAAAGTAAAAAAATGTGCCTTGAGAACCGAAAAT
64 CCATCAGTGTCCCAAAATAAAAAAA-GTGCATTGAGAACCGAAAAT
* *
36978088 TGTAGC-TAGTGCCGGCCATCTA-TTGGCCAGCACCAAATTTTTTTT
1 TGTA-CTTGGTGCCGGCCAT-TACATGGCCAGCACCAAATTTTTTTT
36978133 ATTATTGTCT
Statistics
Matches: 130, Mismatches: 19, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
108 32 0.25
109 52 0.40
110 5 0.04
111 39 0.30
112 2 0.02
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (108 bp):
TGTACTTGGTGCCGGCCATTACATGGCCAGCACCAAATTTTTTTTTAAATACACTAGTCTCGACC
ATCAGTGTCCCAAAATAAAAAAAGTGCATTGAGAACCGAAAAT
Found at i:36979589 original size:112 final size:111
Alignment explanation
Indices: 36979316--36979627 Score: 383
Period size: 112 Copynumber: 2.7 Consensus size: 111
36979306 AAAATAAGCA
* * *
36979316 TTAGCGGCGTTTTTATAAAAGCGCCGCAAAAAGCCAAAGACAAACGGCACCGTTTTCTGATTTTT
1 TTAGCGGCGTTTTT-TTAAAGCGCCGCAAAAAGCCTAAG-CAAACGGCACCGTTTTCTGA-GTTT
* *
36979381 TGGGGTCTTTAGCGGCGTTTTCTGTAAAAGCGCCGCTAATGCTCAGGTTT
63 TGGGGTCTTTAGCGGCG-TTTATGTAAAAGCGCCGCTAATGCTCAGGTCT
* * * * *
36979431 TTAGCGGCGTTGTTTTAAGAGCGCCGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCGTTTTTTTAA-AGCGCCGCAAAAAGCCT-AAGCAAACGGCACCGTTTTCTGAGTTTT
* * * *
36979496 GGGGTCTTTAGTGGCGTTTATGT-AAAGTGCCGCTAATGCTTATGTCT
64 GGGGTCTTTAGCGGCGTTTATGTAAAAGCGCCGCTAATGCTCAGGTCT
* *
36979543 TTAGCGACGTTTTTTTAAAGCGCCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTT
1 TTAGCGGCGTTTTTTTAAAGCGCCGC-AAAAAGCCTAAGC-AAACGGCACCGTTTTCTGAG-TTT
*
36979608 TGGGGTCTTTCGCGGCGTTT
63 TGGGGTCTTTAGCGGCGTTT
36979628 TTAAGAGCGC
Statistics
Matches: 170, Mismatches: 22, Indels: 12
0.83 0.11 0.06
Matches are distributed among these distances:
111 11 0.06
112 62 0.36
113 27 0.16
114 22 0.13
115 46 0.27
116 2 0.01
ACGTcount: A:0.22, C:0.21, G:0.25, T:0.32
Consensus pattern (111 bp):
TTAGCGGCGTTTTTTTAAAGCGCCGCAAAAAGCCTAAGCAAACGGCACCGTTTTCTGAGTTTTGG
GGTCTTTAGCGGCGTTTATGTAAAAGCGCCGCTAATGCTCAGGTCT
Found at i:36979762 original size:182 final size:183
Alignment explanation
Indices: 36979434--36979823 Score: 714
Period size: 182 Copynumber: 2.1 Consensus size: 183
36979424 CAGGTTTTTA
36979434 GCGGCGTTGTTTTAAGAGCGCCGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTTGGG
1 GCGGCG-T-TTTTAAGAGCGCCGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTTGGG
36979499 GTCTTTAGTGGCGTTTATGTAAAGTGCCGCTAATGCTTATGTCTTTAGCGACGTTTTTTTAAAGC
64 GTCTTTAGTGGCGTTTATGTAAAGTGCCGCTAATGCTTATGTCTTTAGCGACGTTTTTTTAAAGC
36979564 GCCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTC
129 GCCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTC
36979619 GCGGCGTTTTTAAGAGCG-CGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTTGGGGT
1 GCGGCGTTTTTAAGAGCGCCGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTTGGGGT
36979683 CTTTAGTGGCGTTTATGTAAAGTGCCGCTAATGCCTT-TGTCTTTAGCGACGTTTTTTTAAAGCG
66 CTTTAGTGGCGTTTATGTAAAGTGCCGCTAATG-CTTATGTCTTTAGCGACGTTTTTTTAAAGCG
36979747 CCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTC
130 CCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTC
36979801 GCGGCGTTTATGTAA-AGCGCCGC
1 GCGGCGTTT-T-TAAGAGCGCCGC
36979824 TAATGTTCAG
Statistics
Matches: 201, Mismatches: 0, Indels: 9
0.96 0.00 0.04
Matches are distributed among these distances:
182 169 0.84
183 19 0.09
184 7 0.03
185 6 0.03
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.32
Consensus pattern (183 bp):
GCGGCGTTTTTAAGAGCGCCGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGAGTTTTGGGGT
CTTTAGTGGCGTTTATGTAAAGTGCCGCTAATGCTTATGTCTTTAGCGACGTTTTTTTAAAGCGC
CGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGAGTTTTTGGGGTCTTTC
Found at i:36979812 original size:113 final size:111
Alignment explanation
Indices: 36979611--36980007 Score: 502
Period size: 113 Copynumber: 3.5 Consensus size: 111
36979601 GAGTTTTTGG
* * * *
36979611 GGTCTTTCGCGGCG--TTTTTAAGAGCG-CGCAAAGAGTCTAAACCCAACGGCACCGTTTTCTGA
1 GGTCTTTAGCGGCGTTTTTTTAA-AGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGA
* *
36979673 G-TTTTGGGGTCTTTAGTGGCGTTTATGTAAAGTGCCGCTAATGCCTT
65 GTTTTTGGGGTCTTTAGCGGCGTTTATGTAAAGCGCCGCTAATG-CTT
* * **
36979720 TGTCTTTAGCGACGTTTTTTTAAAGCGCCGCAAAAAAGCCTAAGCTTAACGGCACCGTTTTCTGA
1 GGTCTTTAGCGGCGTTTTTTTAAAGCGCCGC-AAAAAGCCTAAGCCCAACGGCACCGTTTTCTGA
*
36979785 GTTTTTGGGGTCTTTCGCGGCGTTTATGTAAAGCGCCGCTAATG-TT
65 GTTTTTGGGGTCTTTAGCGGCGTTTATGTAAAGCGCCGCTAATGCTT
*
36979831 CAGGTCTTTAGTGGCGTTTTTTTAAATGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCT
1 --GGTCTTTAGCGGCGTTTTTTTAAA-GCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCT
*
36979896 GAGTTTTTGGGGGTCTTTAGCGGCGCATTTA--TAAAGCGCCGCTAATGCTGA
63 GAGTTTTT-GGGGTCTTTAGCGGCG--TTTATGTAAAGCGCCGCTAATGCT-T
** *
36979947 GGTCTTTAGCGGCGTTTTCTCAAAAGCGCCGCAAAAAGCCTAAACCCAACGGCACCGTTTT
1 GGTCTTTAGCGGCGTTTT-TTTAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTT
36980008 NNNNNNNNNN
Statistics
Matches: 252, Mismatches: 22, Indels: 23
0.85 0.07 0.08
Matches are distributed among these distances:
109 11 0.04
110 4 0.02
111 12 0.05
112 29 0.12
113 97 0.38
114 90 0.36
115 5 0.02
116 4 0.02
ACGTcount: A:0.21, C:0.23, G:0.25, T:0.31
Consensus pattern (111 bp):
GGTCTTTAGCGGCGTTTTTTTAAAGCGCCGCAAAAAGCCTAAGCCCAACGGCACCGTTTTCTGAG
TTTTTGGGGTCTTTAGCGGCGTTTATGTAAAGCGCCGCTAATGCTT
Found at i:36988856 original size:6 final size:6
Alignment explanation
Indices: 36988835--36988869 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
36988825 TAGTTTCTAG
* *
36988835 TTCGGA TTCAGT TTCGGT TTCGGT TTCGGT TTCGG
1 TTCGGT TTCGGT TTCGGT TTCGGT TTCGGT TTCGG
36988870 AGTCTTCGTC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.06, C:0.17, G:0.31, T:0.46
Consensus pattern (6 bp):
TTCGGT
Found at i:36992536 original size:43 final size:43
Alignment explanation
Indices: 36992484--36992628 Score: 177
Period size: 43 Copynumber: 3.4 Consensus size: 43
36992474 CGTTTTTGGC
* *
36992484 AAAAGCGCCGCTAAAGGCCATGATCTATAGCGGCGCTTATATA
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATA
* **
36992527 AAAAACGCCGCTAAAGACCTTGATCTATAGCGGCGCTTATCCA
1 AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATA
* * * *
36992570 GAAAACGCTGCTAAAGACACCA--ATCTATAGCGGCGGTTATATT
1 AAAAACGCCGCTAAAG--ACCATGATCTATAGCGGCGCTTATATA
36992613 AAAAACGCCGCTAAAG
1 AAAAACGCCGCTAAAG
36992629 CTCTTAGTCT
Statistics
Matches: 86, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
43 83 0.97
45 3 0.03
ACGTcount: A:0.35, C:0.24, G:0.21, T:0.20
Consensus pattern (43 bp):
AAAAACGCCGCTAAAGACCATGATCTATAGCGGCGCTTATATA
Found at i:36992781 original size:22 final size:22
Alignment explanation
Indices: 36992753--36992795 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
36992743 TTGCGGCGCT
*
36992753 AAAAAGCACCGCTAAAGGCCTA
1 AAAAAGCACCGCTAAAAGCCTA
*
36992775 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCACCGCTAAAAGCCT
36992796 GCTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.28, G:0.19, T:0.09
Consensus pattern (22 bp):
AAAAAGCACCGCTAAAAGCCTA
Found at i:36997863 original size:211 final size:210
Alignment explanation
Indices: 36997499--36997920 Score: 756
Period size: 211 Copynumber: 2.0 Consensus size: 210
36997489 CCATAATTCA
*
36997499 ACCATACATAACTACTTATTACCAAACCAAACTTACCATATATGACCACATTTATGCCAACACAA
1 ACCATACACAACTACTTATTACCAAACCAAACTTACCATATATGACCACATTTATGCCAACACAA
*
36997564 ATAGCTCGTAACTACATCAAAGCATAACCCTACTTGGCCACATTATGAACCTACCAAATTTGGTC
66 ATAGCTCGTAACTACATCAAAGCATAACCCTACTTGGCCACATTATGAACATACCAAATTTGGTC
* *
36997629 ACTCAAAACATACATCCACTTAGCCATATCAACATCAACCATCAAAGCATCAAAATGCCAAAAGC
131 ACTCAAAACATACATCCACTTAGCCATATAAACACCAACCATCAAAGCATCAAAATGCCAAAAGC
36997694 ACACCAACCATATACC
196 ACACCAACCAT-TACC
* *
36997710 ACCATACGCAACTACTTATTACCAAAGCAAACTTACCATATATGACCACATTTATGCCAACACAA
1 ACCATACACAACTACTTATTACCAAACCAAACTTACCATATATGACCACATTTATGCCAACACAA
*
36997775 ATAGCTCGTAACTACATTAAAGCATAA-CCTCACTTGGCCACATTATGAACATACCAAATTTGGT
66 ATAGCTCGTAACTACATCAAAGCATAACCCT-ACTTGGCCACATTATGAACATACCAAATTTGGT
36997839 CACTCAAAACATACATCCACTTAGCCATATAAACACCAACCATCAAAGCATCAAAATGCCAAAAG
130 CACTCAAAACATACATCCACTTAGCCATATAAACACCAACCATCAAAGCATCAAAATGCCAAAAG
36997904 CACACCAACCATTACC
195 CACACCAACCATTACC
36997920 A
1 A
36997921 TTTATACATG
Statistics
Matches: 203, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
210 8 0.04
211 195 0.96
ACGTcount: A:0.41, C:0.30, G:0.07, T:0.22
Consensus pattern (210 bp):
ACCATACACAACTACTTATTACCAAACCAAACTTACCATATATGACCACATTTATGCCAACACAA
ATAGCTCGTAACTACATCAAAGCATAACCCTACTTGGCCACATTATGAACATACCAAATTTGGTC
ACTCAAAACATACATCCACTTAGCCATATAAACACCAACCATCAAAGCATCAAAATGCCAAAAGC
ACACCAACCATTACC
Found at i:37009543 original size:6 final size:6
Alignment explanation
Indices: 37009532--37009567 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
37009522 CATGTATTCG
37009532 GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT
1 GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT GCCCTT
37009568 CTATTCTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.00, C:0.50, G:0.17, T:0.33
Consensus pattern (6 bp):
GCCCTT
Found at i:37015937 original size:19 final size:19
Alignment explanation
Indices: 37015913--37015960 Score: 73
Period size: 17 Copynumber: 2.6 Consensus size: 19
37015903 TTTAATCTAC
37015913 TATACATAAAAAAATTTAT
1 TATACATAAAAAAATTTAT
37015932 TATACAT--AAAAATTTAT
1 TATACATAAAAAAATTTAT
*
37015949 TATATATAAAAA
1 TATACATAAAAA
37015961 TTAATATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
17 16 0.62
19 10 0.38
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (19 bp):
TATACATAAAAAAATTTAT
Found at i:37016839 original size:40 final size:40
Alignment explanation
Indices: 37016795--37016870 Score: 109
Period size: 40 Copynumber: 1.9 Consensus size: 40
37016785 ACAAAAAATC
* * *
37016795 GAGCATTAGTGGCGATTTAGCCA-AAGCGCCGCTAAAGGTA
1 GAGCATCAGCGGCGATTT-CCCAGAAGCGCCGCTAAAGGTA
37016835 GAGCATCAGCGGCGATTTCCCAGAAGCGCCGCTAAA
1 GAGCATCAGCGGCGATTTCCCAGAAGCGCCGCTAAA
37016871 AATAGGAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 3 0.09
40 29 0.91
ACGTcount: A:0.29, C:0.25, G:0.29, T:0.17
Consensus pattern (40 bp):
GAGCATCAGCGGCGATTTCCCAGAAGCGCCGCTAAAGGTA
Found at i:37017007 original size:41 final size:40
Alignment explanation
Indices: 37016950--37017186 Score: 258
Period size: 41 Copynumber: 5.8 Consensus size: 40
37016940 TTTTTAAACA
* **
37016950 TTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCGGATT
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG-CC
* * *
37016991 TTTAGCGGCGTTTTTATCTGAGCGCCGCTAATTCTTTGGCC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-TCGGCC
**
37017032 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATA
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG-CC
* * *
37017073 TTTAGCGGCGTTTTTATCTGAGCGCCACTAATTCTCTGGCC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GGCC
* * ***
37017114 TTTAGCGGCGTTTGTATCTAAGCACCGCTAATGCATTTACC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-TCGGCC
** *
37017155 TTTAGCGGCGTTTTTGCCGAAGCGCCGCTAAT
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAAT
37017187 AGTAACAAAA
Statistics
Matches: 163, Mismatches: 29, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
40 3 0.02
41 154 0.94
42 6 0.04
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.35
Consensus pattern (40 bp):
TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGCC
Found at i:37017168 original size:123 final size:123
Alignment explanation
Indices: 37016949--37017186 Score: 336
Period size: 123 Copynumber: 1.9 Consensus size: 123
37016939 TTTTTTAAAC
** * *
37016949 ATTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCGGATTTTTAGCGGCGTTTTTATCTGAGC
1 ATTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCGGACCTTTAGCGGCGTTTGTATCTAAGC
* * * * *
37017014 GCCGCTAATTCTTTGGCCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGAT
66 ACCGCTAATGCTTTGACCTTTAGCGGCGTTTTTACCGAAGCGCCGCTAATGCTCGGAT
* *
37017072 ATTTAGCGGCGTTTTTATCTGAGCGCCACTAATTCTCTGG-CCTTTAGCGGCGTTTGTATCTAAG
1 ATTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTC-GGACCTTTAGCGGCGTTTGTATCTAAG
*
37017136 CACCGCTAATGCATTT-ACCTTTAGCGGCGTTTTTGCCGAAGCGCCGCTAAT
65 CACCGCTAATGC-TTTGACCTTTAGCGGCGTTTTTACCGAAGCGCCGCTAAT
37017187 AGTAACAAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
123 96 0.95
124 5 0.05
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (123 bp):
ATTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCGGACCTTTAGCGGCGTTTGTATCTAAGC
ACCGCTAATGCTTTGACCTTTAGCGGCGTTTTTACCGAAGCGCCGCTAATGCTCGGAT
Found at i:37017186 original size:82 final size:82
Alignment explanation
Indices: 37016950--37017147 Score: 342
Period size: 82 Copynumber: 2.4 Consensus size: 82
37016940 TTTTTAAACA
* *
37016950 TTTAGCGGCGTTTTTATCTAAGCGCCACTAATGCTCGGATTTTTAGCGGCGTTTTTATCTGAGCG
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAGCG
*
37017015 CCGCTAATTCTTTGGCC
66 CCGCTAATTCTCTGGCC
37017032 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAGCG
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAGCG
*
37017097 CCACTAATTCTCTGGCC
66 CCGCTAATTCTCTGGCC
* *
37017114 TTTAGCGGCGTTTGTATCTAAGCACCGCTAATGC
1 TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC
37017148 ATTTACCTTT
Statistics
Matches: 110, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 110 1.00
ACGTcount: A:0.17, C:0.24, G:0.23, T:0.36
Consensus pattern (82 bp):
TTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGGATATTTAGCGGCGTTTTTATCTGAGCG
CCGCTAATTCTCTGGCC
Found at i:37020317 original size:17 final size:18
Alignment explanation
Indices: 37020295--37020338 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 18
37020285 ACAGGGTTAA
*
37020295 TTAAGGTTTAG-GAGGAT
1 TTAAGGGTTAGAGAGGAT
*
37020312 TTAAGGGTTAGAGAGGTT
1 TTAAGGGTTAGAGAGGAT
*
37020330 TTAGGGGTT
1 TTAAGGGTT
37020339 TGGCCGGGGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
17 10 0.43
18 13 0.57
ACGTcount: A:0.25, C:0.00, G:0.39, T:0.36
Consensus pattern (18 bp):
TTAAGGGTTAGAGAGGAT
Found at i:37027106 original size:42 final size:41
Alignment explanation
Indices: 37027047--37027168 Score: 131
Period size: 42 Copynumber: 2.9 Consensus size: 41
37027037 GTTTGTGAAA
*
37027047 TAAGCGTCGCTAAAGAACACTACTATTAGCGGCGTTTT-TGACC
1 TAAGCGCCGCTAAAGAACA-TACT-TTAGCGGCGTTTTCT-ACC
* * *
37027090 -AAGTGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACA-TAC-TTTAGCGGCGTTTTCTACC
37027132 TAAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT
1 TAAGCGCCGCTAAAGAACAT-A-CTTTAGCGGCGTTT
37027169 ATTTCCTTAG
Statistics
Matches: 67, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
42 34 0.51
43 32 0.48
44 1 0.01
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (41 bp):
TAAGCGCCGCTAAAGAACATACTTTAGCGGCGTTTTCTACC
Found at i:37027150 original size:43 final size:42
Alignment explanation
Indices: 37027047--37027189 Score: 155
Period size: 43 Copynumber: 3.4 Consensus size: 42
37027037 GTTTGTGAAA
* * * *
37027047 TAAGCGTCGCTAAAGAACACTACTATTAGCGGCGTTTTTGACC
1 TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTT-TCC
* *
37027090 -AAGTGCCGCTATAGAACATTACTTTTAGCGGCGTTTTCTTCC
1 TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTT-TTCC
*
37027132 TAAGCGCCGCTAAAGAACATGA-TCTTTAGCGGCGTTTATTTCC
1 TAAGCGCCGCTAAAGAACATTACT-TTTAGCGGCGTTT-TTTCC
* *
37027175 TTAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
37027190 TTAGCGACGT
Statistics
Matches: 85, Mismatches: 11, Indels: 8
0.82 0.11 0.08
Matches are distributed among these distances:
42 35 0.41
43 49 0.58
44 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATTACTTTTAGCGGCGTTTTTTCC
Found at i:37029129 original size:17 final size:18
Alignment explanation
Indices: 37029107--37029141 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
37029097 GCAGACAACC
37029107 TAAAAAG-AAATTTACTA
1 TAAAAAGAAAATTTACTA
37029124 TAAAAAGAAAATTTACTA
1 TAAAAAGAAAATTTACTA
37029142 ATAATTGAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.29
Consensus pattern (18 bp):
TAAAAAGAAAATTTACTA
Found at i:37031819 original size:2 final size:2
Alignment explanation
Indices: 37031806--37031835 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
37031796 TCAGAAAGGA
*
37031806 AT AT AA AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37031836 TTTATTGTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:37032608 original size:7 final size:7
Alignment explanation
Indices: 37032596--37032621 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
37032586 TGAAAGCATC
37032596 CTCCCAA
1 CTCCCAA
37032603 CTCCCAA
1 CTCCCAA
37032610 CTCCCAA
1 CTCCCAA
37032617 CTCCC
1 CTCCC
37032622 TCCACCACAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.23, C:0.62, G:0.00, T:0.15
Consensus pattern (7 bp):
CTCCCAA
Found at i:37035925 original size:19 final size:19
Alignment explanation
Indices: 37035887--37035925 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
37035877 AAAACAATGA
*
37035887 AAGAATTTACCTAATTTAG
1 AAGAATTTACCTAATCTAG
37035906 AAGAATTTGACCTAA-CTAG
1 AAGAATTT-ACCTAATCTAG
37035925 A
1 A
37035926 TTCAAGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.31
Consensus pattern (19 bp):
AAGAATTTACCTAATCTAG
Found at i:37037055 original size:58 final size:58
Alignment explanation
Indices: 37036978--37037098 Score: 163
Period size: 58 Copynumber: 2.1 Consensus size: 58
37036968 AAACTTCCTA
* * *
37036978 ACATATTTATTTTTAGAATTTTTAGAA-GATTTATTATACAACGAAAACAACACAAAAC
1 ACATATTTATTTTTAGAATTTTT-GAAGGACTAATTAAACAACGAAAACAACACAAAAC
* * * *
37037036 ACATTTTTATTTTTGGAATTTTTGAAGGACTAATTAAACAAGGGAAACAACACAAAAC
1 ACATATTTATTTTTAGAATTTTTGAAGGACTAATTAAACAACGAAAACAACACAAAAC
37037094 ACATA
1 ACATA
37037099 AAATTGATAG
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
57 3 0.06
58 51 0.94
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.32
Consensus pattern (58 bp):
ACATATTTATTTTTAGAATTTTTGAAGGACTAATTAAACAACGAAAACAACACAAAAC
Found at i:37040898 original size:105 final size:105
Alignment explanation
Indices: 37040755--37041017 Score: 339
Period size: 105 Copynumber: 2.5 Consensus size: 105
37040745 AACATATGTT
* * * * *
37040755 AACGAACTATTTAGGAGTCGCAATCTTAAATCAACTAACTCAAATAAATTTAGGTTGCA-ATCTT
1 AACGAGCTATTTAGGAGTTGCAATCTTAAATCTACTAACTCAAAGAAACTTAGGTTG-AGATCTT
* * *
37040819 AAATTAGCTAACCTTTGTAATATCAGCTGTGAACGTAGGAC
65 AAATCAACCAACCTTTGTAATATCAGCTGTGAACGTAGGAC
* * *
37040860 AACGAGTTGTTTAGGAGTTGCAATCTTAAATCTGCTAACTCAAAGAAACTTAGGTTGAGATCTTA
1 AACGAGCTATTTAGGAGTTGCAATCTTAAATCTACTAACTCAAAGAAACTTAGGTTGAGATCTTA
* * *
37040925 AATCAACCAACCTTTGTAATATCGGCTGTGAATGTAGGTC
66 AATCAACCAACCTTTGTAATATCAGCTGTGAACGTAGGAC
** * * *
37040965 AGTGAGCTATTTAGGAGTTACGATATTAAATCTACTAACTCAAAGAAACTTAG
1 AACGAGCTATTTAGGAGTTGCAATCTTAAATCTACTAACTCAAAGAAACTTAG
37041018 TTATGAACGT
Statistics
Matches: 135, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
104 1 0.01
105 134 0.99
ACGTcount: A:0.36, C:0.16, G:0.17, T:0.31
Consensus pattern (105 bp):
AACGAGCTATTTAGGAGTTGCAATCTTAAATCTACTAACTCAAAGAAACTTAGGTTGAGATCTTA
AATCAACCAACCTTTGTAATATCAGCTGTGAACGTAGGAC
Found at i:37051109 original size:11 final size:11
Alignment explanation
Indices: 37051095--37051130 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
37051085 ATATCCTAAC
37051095 AATAATAATAA
1 AATAATAATAA
*
37051106 AATAATAGTAA
1 AATAATAATAA
*
37051117 TATAATAATAA
1 AATAATAATAA
37051128 AAT
1 AAT
37051131 GACAACAAAC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.31
Consensus pattern (11 bp):
AATAATAATAA
Found at i:37055139 original size:3 final size:3
Alignment explanation
Indices: 37055131--37055163 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
37055121 TGTTGGTAGA
37055131 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
37055164 TTAGTGATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:37056427 original size:22 final size:22
Alignment explanation
Indices: 37056397--37056438 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
37056387 ATCTAATAAT
*
37056397 AAATGTTTT-ATAATATAAAATA
1 AAATATTTTAATAATA-AAAATA
37056419 AAATATTTTAATAATAAAAA
1 AAATATTTTAATAATAAAAA
37056439 CATGAATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATATTTTAATAATAAAAATA
Found at i:37059144 original size:22 final size:21
Alignment explanation
Indices: 37059109--37059157 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
37059099 TAATTATTAT
* * *
37059109 AAAATATTTTAAATAAAAGATC
1 AAAATATGTCAAATAAAAG-TA
*
37059131 AAAATATGTCAAATTAAAGTA
1 AAAATATGTCAAATAAAAGTA
37059152 AAAATA
1 AAAATA
37059158 GGAAGTAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.61, C:0.04, G:0.06, T:0.29
Consensus pattern (21 bp):
AAAATATGTCAAATAAAAGTA
Found at i:37060976 original size:17 final size:17
Alignment explanation
Indices: 37060954--37060986 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37060944 TAGGAAATAA
*
37060954 AAAATGTATATGTATAT
1 AAAATGTAAATGTATAT
37060971 AAAATGTAAATGTATA
1 AAAATGTAAATGTATA
37060987 ATATGTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
AAAATGTAAATGTATAT
Found at i:37061130 original size:3 final size:3
Alignment explanation
Indices: 37061122--37061160 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
37061112 GTATATATAG
* *
37061122 TAA TAA TAA TAA TAA TGA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37061161 CTTAATAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:37061523 original size:19 final size:19
Alignment explanation
Indices: 37061499--37061590 Score: 141
Period size: 19 Copynumber: 4.8 Consensus size: 19
37061489 AATCATATCT
37061499 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
37061518 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
37061537 TCTAAGATTGTATATCATA
1 TCTAAGATTGCATATCATA
*
37061556 TTTAAGA-TGACATATCATA
1 TCTAAGATTG-CATATCATA
37061575 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
37061591 CTTGAGAATT
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
18 2 0.03
19 61 0.94
20 2 0.03
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:37061552 original size:38 final size:38
Alignment explanation
Indices: 37061476--37061590 Score: 158
Period size: 38 Copynumber: 2.9 Consensus size: 38
37061466 AAATTAAATC
*
37061476 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATATCATA
*
37061518 TCTAAGATTACATATCATATCTAAGATTGTATATCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATATCATA
* *
37061556 TTTAAGATGACATATCATATCTAAGATTGCATATC
1 TCTAAGATTACATATCATATCTAAGATTGCATATC
37061591 CTTGAGAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
38 50 0.74
41 7 0.10
42 11 0.16
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATATCATA
Found at i:37062055 original size:44 final size:44
Alignment explanation
Indices: 37062002--37062099 Score: 135
Period size: 44 Copynumber: 2.2 Consensus size: 44
37061992 GATCTACTCT
*
37062002 ACTGCAACTTCAGAGAGATAAGATCT-GTGGTTTTAATCCGCTCC
1 ACTGCAACTTCAGAGAGATAAGAT-TAGTGGCTTTAATCCGCTCC
* * * *
37062046 ACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCC
1 ACTGCAACTTCAGAGAGATAAGATTAGTGGCTTTAATCCGCTCC
37062090 ACTGCAACTT
1 ACTGCAACTT
37062100 NNNNNNNNNN
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
43 1 0.02
44 47 0.98
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
ACTGCAACTTCAGAGAGATAAGATTAGTGGCTTTAATCCGCTCC
Found at i:37062700 original size:88 final size:88
Alignment explanation
Indices: 37062549--37064323 Score: 2604
Period size: 88 Copynumber: 20.2 Consensus size: 88
37062539 NNNNNNNNNN
* *
37062549 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCATGGAGGCAAGGTTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37062614 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * *
37062637 ATGAAGGCAAGATCTGCTATTTTTAACCTGTTCCTCTACAACCCAGGGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37062702 TTGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * * *
37062725 AGGAAGACAAGATCTACTATTTTTAACCTGCTTCGCTGCAACCCAGGGAGGCAAGGCTGGTGCCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37062790 TTGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * * * * *
37062813 AGGCAGACAAGATCTACTATTTTTAACCTGCTTCGCTGCAACCCAGGGCGGCAAGGCCGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
**
37062878 TCGATCTGCTTCATTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* *
37062901 AGGAAGGCAAGATCTGCTATTTTTAACCTG-TCCCTCTACATCCCAGGGAGGCAAGGCT-GTAGT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCT-CCGCTACAACCCAGGGAGGCAAGGCTGGT-GT
*
37062964 CTTTGATCTGCTTCGCTGTCGGTGC
64 CTTCGATCTGCTTCGCTGTCGGTGC
* * * * * * *
37062989 AGGCAGACAAGATCTACTATTTTTAACCTGCTTCGCTGCAACCCAGGGCGGCAAGGCCGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
**
37063054 TCGATCTGCTTCATTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* *
37063077 AGGAAGGCAAGATCTGCTATTTTTAACCTG-TCCCTCTACATCCCAGGGAGGCAAGGCT-GTAGT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCT-CCGCTACAACCCAGGGAGGCAAGGCTGGT-GT
*
37063140 CTTTGATCTGCTTCGCTGTCGGTGC
64 CTTCGATCTGCTTCGCTGTCGGTGC
* * * * * * *
37063165 AGGCAGACAAGATCTACTATTTTTAACCTGCTTCGCTGCAACCCAGGGCGGCAAGGCCGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
**
37063230 TCGATCTGCTTCATTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * * * *
37063253 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCACTGCAACCTAAGGAGGCAAGGCTAGTATCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37063318 TCGATCTGCTTCGTTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * *
37063341 AAGAAGGTAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGTGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37063406 TCGATCTGCTTCGCTATCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * *
37063429 AGGAAGACAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGTGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37063494 TCGATCTGCTTCGCTGTAGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
** *
37063517 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACCAAGGGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37063582 TCGATCTGCTTCGCTGTAGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * *
37063605 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGACAAGGTTGATGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37063670 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* *
37063693 AAGAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37063758 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * * *
37063781 AAGAAGGCAAGATTTGCTATTTTTAACCTGCTCCGCTACAACCTAGTGAGGCAAGGCTGATGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37063846 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* *
37063869 AGGAAGGCAAAATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGGGAGGCAAGGCTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
*
37063934 TCGATCTACTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * *
37063957 AGGAAGGCAAAATCTGCTATTTTTAACCTGCTCCGCTACAACCTAGGGAGGCAAGGCTGGTGTCA
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
* *
37064022 TCGATTTGCTTCACTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * * * *
37064045 AAGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGCAACCTAGGGAGGCAAGGCTAGTATCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37064110 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* * ** *
37064133 AAGAAGGCAAGATCTGCTATTTTTAACCTACTCCGCTGTAACCCAGGGAGGCAAGGTTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37064198 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
* ** *
37064221 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGTTGTAACCCAGGGAGGCAAGGTTGGTGTCT
1 AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
37064286 TCGATCTGCTTCGCTGTCGGTGC
66 TCGATCTGCTTCGCTGTCGGTGC
*
37064309 AGGAAGGTAAGATCT
1 AGGAAGGCAAGATCT
37064324 TTTATCTTCA
Statistics
Matches: 1535, Mismatches: 144, Indels: 16
0.91 0.08 0.01
Matches are distributed among these distances:
87 6 0.00
88 1523 0.99
89 6 0.00
ACGTcount: A:0.21, C:0.25, G:0.27, T:0.28
Consensus pattern (88 bp):
AGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTCT
TCGATCTGCTTCGCTGTCGGTGC
Found at i:37069643 original size:17 final size:17
Alignment explanation
Indices: 37069621--37069653 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37069611 TAGGAAATAA
*
37069621 AAAATGTATATGTATAT
1 AAAATGTAAATGTATAT
37069638 AAAATGTAAATGTATA
1 AAAATGTAAATGTATA
37069654 ATATGTCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
AAAATGTAAATGTATAT
Found at i:37069797 original size:3 final size:3
Alignment explanation
Indices: 37069789--37069827 Score: 60
Period size: 3 Copynumber: 13.0 Consensus size: 3
37069779 GTATATATAG
* *
37069789 TAA TAA TAA TAA TAA TGA TAA TAA TAA CAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
37069828 CTTAATAACA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.64, C:0.03, G:0.03, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:37070173 original size:23 final size:24
Alignment explanation
Indices: 37070143--37070189 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 24
37070133 AAATTAAATC
37070143 TCTAAGATTACA-AAATCATATCT
1 TCTAAGATTACATAAATCATATCT
*
37070166 TCTAAGATTGCATAAATCATATCT
1 TCTAAGATTACATAAATCATATCT
37070190 AAGATTGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 11 0.50
24 11 0.50
ACGTcount: A:0.40, C:0.17, G:0.06, T:0.36
Consensus pattern (24 bp):
TCTAAGATTACATAAATCATATCT
Done.