Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 116 of 163
Found at i:37397973 original size:8 final size:8
Alignment explanation
Indices: 37397960--37397992 Score: 66
Period size: 8 Copynumber: 4.1 Consensus size: 8
37397950 AATGCCGTTC
37397960 CTGTTGTT
1 CTGTTGTT
37397968 CTGTTGTT
1 CTGTTGTT
37397976 CTGTTGTT
1 CTGTTGTT
37397984 CTGTTGTT
1 CTGTTGTT
37397992 C
1 C
37397993 CTGGTAATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 25 1.00
ACGTcount: A:0.00, C:0.15, G:0.24, T:0.61
Consensus pattern (8 bp):
CTGTTGTT
Found at i:37403021 original size:28 final size:29
Alignment explanation
Indices: 37402959--37403028 Score: 115
Period size: 29 Copynumber: 2.4 Consensus size: 29
37402949 AATCAAACAC
37402959 CAGAAAATATTTTCCTGTAAGTCATTTTA
1 CAGAAAATATTTTCCTGTAAGTCATTTTA
37402988 CAGAAAATATTTTCCTGTAA-TCATTTTA
1 CAGAAAATATTTTCCTGTAAGTCATTTTA
* *
37403016 CGGAAAACATTTT
1 CAGAAAATATTTT
37403029 ACTGCCAATC
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
28 19 0.49
29 20 0.51
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (29 bp):
CAGAAAATATTTTCCTGTAAGTCATTTTA
Found at i:37413711 original size:5 final size:5
Alignment explanation
Indices: 37413701--37413736 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
37413691 TGAGCATTCG
37413701 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA ATCGA A
37413737 AATTTTCGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:37414564 original size:9 final size:9
Alignment explanation
Indices: 37414547--37414583 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
37414537 TATAGTTTGA
37414547 TATTCGAAT
1 TATTCGAAT
*
37414556 TATTTGAAT
1 TATTCGAAT
*
37414565 TATTCGAGT
1 TATTCGAAT
37414574 TATTCGAAT
1 TATTCGAAT
37414583 T
1 T
37414584 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:37414653 original size:9 final size:9
Alignment explanation
Indices: 37414636--37414666 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37414626 TCGAGTTGAT
37414636 TCGAATAAC
1 TCGAATAAC
*
37414645 TCGATTAAC
1 TCGAATAAC
37414654 TCGAATAAC
1 TCGAATAAC
37414663 TCGA
1 TCGA
37414667 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:37417880 original size:27 final size:27
Alignment explanation
Indices: 37417826--37417923 Score: 94
Period size: 27 Copynumber: 3.6 Consensus size: 27
37417816 TCATCGGGAT
* * *
37417826 AGTAAATACAGGATAGTCCATCATGAC
1 AGTAAACACAGGATAGTCCGTCAAGAC
* *
37417853 AGTAAACACAGGGTAGTCCGTTAAGAC
1 AGTAAACACAGGATAGTCCGTCAAGAC
*
37417880 AATAAACAC-GGAATAGTCCG-CAATGAC
1 AGTAAACACAGG-ATAGTCCGTCAA-GAC
37417907 AGTAAACAC-GGAATAGT
1 AGTAAACACAGG-ATAGT
37417924 TCACTGGGAT
Statistics
Matches: 60, Mismatches: 9, Indels: 4
0.82 0.12 0.05
Matches are distributed among these distances:
26 4 0.07
27 56 0.93
ACGTcount: A:0.42, C:0.18, G:0.21, T:0.18
Consensus pattern (27 bp):
AGTAAACACAGGATAGTCCGTCAAGAC
Found at i:37417964 original size:27 final size:27
Alignment explanation
Indices: 37417876--37417972 Score: 92
Period size: 27 Copynumber: 3.6 Consensus size: 27
37417866 TAGTCCGTTA
* *
37417876 AGACAATAAACACGGAATAGTCCG-CA
1 AGACAATAAACACGGAATAGTCTGCCG
*
37417902 ATGACAGTAAACACGGAATAGT-T-CACTG
1 A-GACAATAAACACGGAATAGTCTGC-C-G
* * *
37417930 GGATAATAAACACGGGATAGTCTGCCG
1 AGACAATAAACACGGAATAGTCTGCCG
37417957 AGACAATAAACACGGA
1 AGACAATAAACACGGA
37417973 GAAGTCCATC
Statistics
Matches: 55, Mismatches: 10, Indels: 11
0.72 0.13 0.14
Matches are distributed among these distances:
26 1 0.02
27 51 0.93
28 2 0.04
29 1 0.02
ACGTcount: A:0.42, C:0.20, G:0.23, T:0.15
Consensus pattern (27 bp):
AGACAATAAACACGGAATAGTCTGCCG
Found at i:37421864 original size:19 final size:17
Alignment explanation
Indices: 37421823--37421937 Score: 56
Period size: 19 Copynumber: 6.4 Consensus size: 17
37421813 TATATTTTTT
37421823 AATTTTTTTATATTT-T-
1 AATTTTTTTAT-TTTCTA
*
37421839 CATTTTTTGTAATTTTCTA
1 AATTTTTT-T-ATTTTCTA
* * *
37421858 AATTTTTAACTATTTTTTT
1 AATTTTT--TTATTTTCTA
* *
37421877 AATTTTTATTTTTTTCGA
1 AATTTTT-TTATTTTCTA
*
37421895 AATTTTTTTATTTGT-TC
1 AATTTTTTTATTT-TCTA
*
37421912 ATTTTTTTGTAATTTTCTA
1 AATTTTTT-T-ATTTTCTA
37421931 AATTTTT
1 AATTTTT
37421938 AACTATTTTT
Statistics
Matches: 73, Mismatches: 16, Indels: 17
0.69 0.15 0.16
Matches are distributed among these distances:
16 7 0.10
17 16 0.22
18 19 0.26
19 30 0.41
20 1 0.01
ACGTcount: A:0.23, C:0.05, G:0.03, T:0.69
Consensus pattern (17 bp):
AATTTTTTTATTTTCTA
Found at i:37421899 original size:27 final size:26
Alignment explanation
Indices: 37421869--37421938 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 26
37421859 ATTTTTAACT
37421869 ATTTTTTTAATTTTTATTTTTTTCGAA
1 ATTTTTTTAATTTTTATTTTTTT-GAA
*
37421896 ATTTTTTT-ATTTGTTCATTTTTTTGTA
1 ATTTTTTTAATTT-TT-ATTTTTTTGAA
* *
37421923 ATTTTCTAAATTTTTA
1 ATTTTTTTAATTTTTA
37421939 ACTATTTTTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
26 5 0.14
27 20 0.54
28 12 0.32
ACGTcount: A:0.21, C:0.04, G:0.04, T:0.70
Consensus pattern (26 bp):
ATTTTTTTAATTTTTATTTTTTTGAA
Found at i:37422912 original size:21 final size:19
Alignment explanation
Indices: 37422886--37422925 Score: 53
Period size: 19 Copynumber: 2.0 Consensus size: 19
37422876 CTGGTTCGGT
37422886 TTTTAATAAACACAAAAAATA
1 TTTTAA-AAACA-AAAAAATA
*
37422907 TTTTAAAAATAAAAAAATA
1 TTTTAAAAACAAAAAAATA
37422926 AAAAAATATA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (19 bp):
TTTTAAAAACAAAAAAATA
Found at i:37437014 original size:18 final size:18
Alignment explanation
Indices: 37436991--37437028 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
37436981 TTCAATTAAG
*
37436991 TCTTTCATT-AAGTGTTTT
1 TCTTTC-TTCAAGTATTTT
37437009 TCTTTCTTCAAGTATTTT
1 TCTTTCTTCAAGTATTTT
37437027 TC
1 TC
37437029 ATCTAGTTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 2 0.11
18 16 0.89
ACGTcount: A:0.16, C:0.16, G:0.08, T:0.61
Consensus pattern (18 bp):
TCTTTCTTCAAGTATTTT
Found at i:37437114 original size:12 final size:12
Alignment explanation
Indices: 37437066--37437148 Score: 60
Period size: 12 Copynumber: 6.8 Consensus size: 12
37437056 TACCAAGTTT
*
37437066 TTTTTTATCAAG
1 TTTTTCATCAAG
* *
37437078 TTTTGCAGCAAG
1 TTTTTCATCAAG
* *
37437090 TTCTTT-TTAAAG
1 TT-TTTCATCAAG
37437102 TTTTTCATCAAG
1 TTTTTCATCAAG
* *
37437114 TCTTTTCATAAAA
1 T-TTTTCATCAAG
*
37437127 TTTTCCATCAAG
1 TTTTTCATCAAG
*
37437139 TTTTTAATCA
1 TTTTTCATCA
37437149 TTTTGTTTTT
Statistics
Matches: 52, Mismatches: 16, Indels: 6
0.70 0.22 0.08
Matches are distributed among these distances:
11 3 0.06
12 37 0.71
13 12 0.23
ACGTcount: A:0.28, C:0.14, G:0.08, T:0.49
Consensus pattern (12 bp):
TTTTTCATCAAG
Found at i:37437125 original size:25 final size:23
Alignment explanation
Indices: 37437075--37437143 Score: 68
Period size: 24 Copynumber: 2.9 Consensus size: 23
37437065 TTTTTTTATC
* *
37437075 AAGTTTTGCAGCAAGTTCTTTTTA
1 AAGTTTTCCATCAAG-TCTTTTTA
*
37437099 AAGTTTTTCATCAAGTCTTTTCATA
1 AAGTTTTCCATCAAGTCTTTT--TA
*
37437124 AAATTTTCCATCAAGT-TTTT
1 AAGTTTTCCATCAAGTCTTTT
37437144 AATCATTTTG
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
23 6 0.15
24 17 0.44
25 16 0.41
ACGTcount: A:0.28, C:0.14, G:0.10, T:0.48
Consensus pattern (23 bp):
AAGTTTTCCATCAAGTCTTTTTA
Found at i:37438474 original size:11 final size:11
Alignment explanation
Indices: 37438458--37438488 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
37438448 TACGTCAAAC
37438458 TTTAATTTTGA
1 TTTAATTTTGA
37438469 TTTAATTTTGA
1 TTTAATTTTGA
*
37438480 TTCAATTTT
1 TTTAATTTT
37438489 CACATTTCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (11 bp):
TTTAATTTTGA
Found at i:37439309 original size:22 final size:22
Alignment explanation
Indices: 37439281--37439354 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 22
37439271 AATTATCATA
37439281 AAATATTATCATAATATAAATT
1 AAATATTATCATAATATAAATT
37439303 AAATATT-T-ATTAA-A-AAATTTT
1 AAATATTATCA-TAATATAAA--TT
*
37439324 TAATAATTTATCATAATATAAATT
1 AAAT-A-TTATCATAATATAAATT
37439348 AAATATT
1 AAATATT
37439355 TATTAATATC
Statistics
Matches: 41, Mismatches: 2, Indels: 18
0.67 0.03 0.30
Matches are distributed among these distances:
19 3 0.07
20 2 0.05
21 9 0.22
22 10 0.24
23 3 0.07
24 9 0.22
25 2 0.05
26 3 0.07
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (22 bp):
AAATATTATCATAATATAAATT
Found at i:37441523 original size:39 final size:39
Alignment explanation
Indices: 37441460--37441612 Score: 216
Period size: 39 Copynumber: 3.9 Consensus size: 39
37441450 CATGTTTTTA
*
37441460 AGTATTGTGATATATGCTTGAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* *
37441499 AGTGTTGTGATATATGTTTAAATGTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
*
37441538 AGTATTGTGATATATGCTTAAATTTTATGTGATTATATG
1 AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
* * * * *
37441577 TGTAATGTGATACATGCTTAAAAGTGAATGTGATTA
1 AGTATTGTGATATATGCTTAAATGT-TATGTGATTA
37441613 CCATGTAAAT
Statistics
Matches: 101, Mismatches: 12, Indels: 1
0.89 0.11 0.01
Matches are distributed among these distances:
39 92 0.91
40 9 0.09
ACGTcount: A:0.31, C:0.03, G:0.22, T:0.45
Consensus pattern (39 bp):
AGTATTGTGATATATGCTTAAATGTTATGTGATTATATG
Found at i:37441529 original size:22 final size:21
Alignment explanation
Indices: 37441504--37441584 Score: 50
Period size: 22 Copynumber: 3.9 Consensus size: 21
37441494 ATATGAGTGT
37441504 TGTGA-TATATGTTTAAATGTTA
1 TGTGATTATATG-TT-AATGTTA
37441526 TGTGATTATATG---A-G-TA
1 TGTGATTATATGTTAATGTTA
*
37441542 TTGTGA-TATATGCTTAAATTTTA
1 -TGTGATTATATG-TT-AATGTTA
37441565 TGTGATTATATGTGTAATGT
1 TGTGATTATATGT-TAATGT
37441585 GATACATGCT
Statistics
Matches: 46, Mismatches: 2, Indels: 22
0.66 0.03 0.31
Matches are distributed among these distances:
16 8 0.17
17 6 0.13
18 1 0.02
21 1 0.02
22 15 0.33
23 15 0.33
ACGTcount: A:0.30, C:0.01, G:0.20, T:0.49
Consensus pattern (21 bp):
TGTGATTATATGTTAATGTTA
Found at i:37442523 original size:30 final size:30
Alignment explanation
Indices: 37442483--37442549 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
37442473 TATTTAAAAG
37442483 CATGTTTGGCAT-GTTCTAATGATTATTGATA
1 CATG-TTGGCATGGTT-TAATGATTATTGATA
37442514 CATGTTGGCATGGTTTAATGATTATTGATA
1 CATGTTGGCATGGTTTAATGATTATTGATA
37442544 CATGTT
1 CATGTT
37442550 TGACTAAAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
30 28 0.80
31 7 0.20
ACGTcount: A:0.25, C:0.09, G:0.21, T:0.45
Consensus pattern (30 bp):
CATGTTGGCATGGTTTAATGATTATTGATA
Found at i:37445958 original size:42 final size:42
Alignment explanation
Indices: 37445911--37446004 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 42
37445901 TCATGTTTAC
* *
37445911 TTTCCGTTTAGCTCTCA-CGACCTTCTGTTTAA-CTTATATGAG
1 TTTCCGTTCAGCTCT-ATCGACCTTCTGTTTAACCCT-TATGAG
* * *
37445953 TTTCCGTTCAGCTCTATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
37445995 TTTCCGTTCA
1 TTTCCGTTCA
37446005 ACCCTTATGG
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
41 1 0.02
42 42 0.93
43 2 0.04
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTATCGACCTTCTGTTTAACCCTTATGAG
Found at i:37446030 original size:21 final size:21
Alignment explanation
Indices: 37445975--37446030 Score: 85
Period size: 21 Copynumber: 2.7 Consensus size: 21
37445965 TCTATTGAGC
37445975 TTCTGTTTAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
* *
37445996 TTCCGTTCAACCCTTATGGGT
1 TTCTGTTTAACCCTTATGGGT
*
37446017 TTCTGTTTAGCCCT
1 TTCTGTTTAACCCT
37446031 CACGAGCTTT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (21 bp):
TTCTGTTTAACCCTTATGGGT
Found at i:37452340 original size:26 final size:26
Alignment explanation
Indices: 37452328--37452400 Score: 96
Period size: 26 Copynumber: 2.8 Consensus size: 26
37452318 CCCGTTATAT
37452328 GGCTCTTCGTGAGCTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
37452354 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
37452380 GGCTC-TC-TAGAGCTTCCCGAT
1 GGCTCTTCGT-GAGCTTCCCGAT
37452401 ATGGCTCGCT
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
24 1 0.02
25 12 0.29
26 28 0.68
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:37452465 original size:25 final size:25
Alignment explanation
Indices: 37452321--37452466 Score: 61
Period size: 26 Copynumber: 5.8 Consensus size: 25
37452311 TGAGTGTCCC
*
37452321 GTTATATGGCTCTTCGTGAGCTTCCCG
1 GTTA-ATGGCTCTTCG-GAGCTTCCTG
* * *
37452348 ATTAAAGGCTCTTTGTGAGCTTCCTG
1 GTTAATGGCTCTTCG-GAGCTTCCTG
* * *
37452374 ATTAATGGCTC-TCTAGAGCTTCC-C
1 GTTAATGGCTCTTC-GGAGCTTCCTG
* * *
37452398 GAT-ATGGCTCGCTT--GAACTT-CTT
1 GTTAATGGCT--CTTCGGAGCTTCCTG
* * * *
37452421 GATATATGGCTATCCAGAGCTTCCTG
1 GTTA-ATGGCTCTTCGGAGCTTCCTG
37452447 GTTAATGGCTCTTCGGAGCT
1 GTTAATGGCTCTTCGGAGCT
37452467 ACCCGTTATT
Statistics
Matches: 89, Mismatches: 20, Indels: 22
0.68 0.15 0.17
Matches are distributed among these distances:
22 1 0.01
23 15 0.17
24 1 0.01
25 34 0.38
26 35 0.39
27 3 0.03
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (25 bp):
GTTAATGGCTCTTCGGAGCTTCCTG
Found at i:37452466 original size:73 final size:73
Alignment explanation
Indices: 37452364--37452504 Score: 180
Period size: 73 Copynumber: 1.9 Consensus size: 73
37452354 GGCTCTTTGT
* * *
37452364 GAGCTTCCTGATTAATGGCTCTCTAGAGCTTCCCGATA-TGGCTCGCTTGAA-CTTCTTGATATA
1 GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATTGGCTCGCAT-AAGCTTCCTGAT-TA
37452427 TGGCTATCCA
64 TGGCTATCCA
* * *
37452437 GAGCTTCCTGGTTAATGGCTCT-TCGGAGCTACCCGTTATTGGCTCGCATAAGCTTCCTGATTAT
1 GAGCTTCCTGATTAATGGCTCTCT-AGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTAT
37452501 GGCT
65 GGCT
37452505 CTTATGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
72 1 0.02
73 41 0.69
74 17 0.29
ACGTcount: A:0.18, C:0.25, G:0.23, T:0.34
Consensus pattern (73 bp):
GAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATTGGCTCGCATAAGCTTCCTGATTATG
GCTATCCA
Found at i:37452514 original size:73 final size:73
Alignment explanation
Indices: 37452339--37452517 Score: 177
Period size: 73 Copynumber: 2.4 Consensus size: 73
37452329 GCTCTTCGTG
* * * *
37452339 AGCTTCCCGATTAAAGGCTCTTTGTGAGCTTCCTGATTAATGGCTCTCTAGAGCTTCCCGATATG
1 AGCTTCCTGATT-ATGGCTC-TTATGAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATG
*
37452404 GCTCGCTTGA
64 GCTCGCATGA
* * * * * *
37452414 A-CTTCTTGATATATGGCTATCCA-GAGCTTCCTGGTTAATGGCTCT-TCGGAGCTACCCGTTAT
1 AGCTTCCTGAT-TATGGCTCT-TATGAGCTTCCTGATTAATGGCTCTCT-AGAGCTACCCGATA-
37452476 TGGCTCGCAT-A
62 TGGCTCGCATGA
37452487 AGCTTCCTGATTATGGCTCTTATGAGCTTCC
1 AGCTTCCTGATTATGGCTCTTATGAGCTTCC
37452518 CGTTATACAG
Statistics
Matches: 84, Mismatches: 14, Indels: 14
0.75 0.12 0.12
Matches are distributed among these distances:
72 2 0.02
73 51 0.61
74 29 0.35
75 2 0.02
ACGTcount: A:0.18, C:0.25, G:0.22, T:0.35
Consensus pattern (73 bp):
AGCTTCCTGATTATGGCTCTTATGAGCTTCCTGATTAATGGCTCTCTAGAGCTACCCGATATGGC
TCGCATGA
Found at i:37452537 original size:49 final size:49
Alignment explanation
Indices: 37452438--37452542 Score: 113
Period size: 49 Copynumber: 2.1 Consensus size: 49
37452428 GGCTATCCAG
* * ** *
37452438 AGCTTCCTGGTTAATGGCTCTTCGGAGCTACCCGTTATTGGCTCGCATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
* * *
37452487 AGCTTCCTGATT-ATGGCTCTTATGAGCTTCCCGTTATACAGCCCGGATA
1 AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTAT-CAGCCCGCATA
*
37452536 AGGTTCC
1 AGCTTCC
37452543 CGTTACAAGG
Statistics
Matches: 46, Mismatches: 9, Indels: 2
0.81 0.16 0.04
Matches are distributed among these distances:
48 22 0.48
49 24 0.52
ACGTcount: A:0.18, C:0.27, G:0.23, T:0.32
Consensus pattern (49 bp):
AGCTTCCTGATTAATGGCTCTTAGGAGCTACCCGTTATCAGCCCGCATA
Found at i:37455966 original size:18 final size:17
Alignment explanation
Indices: 37455936--37455979 Score: 72
Period size: 18 Copynumber: 2.6 Consensus size: 17
37455926 TTAATTAAAT
37455936 AAAAAGG-ACTAAATTG
1 AAAAAGGTACTAAATTG
37455952 AAAAATGGTACTAAATTG
1 AAAAA-GGTACTAAATTG
37455970 AAAAAGGTAC
1 AAAAAGGTAC
37455980 AAAACTTGTG
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 5 0.19
17 7 0.27
18 14 0.54
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (17 bp):
AAAAAGGTACTAAATTG
Found at i:37455973 original size:17 final size:18
Alignment explanation
Indices: 37455936--37455979 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
37455926 TTAATTAAAT
37455936 AAAAAGG-ACTAAATTGA
1 AAAAAGGTACTAAATTGA
*
37455953 AAAATGGTACTAAATTG-
1 AAAAAGGTACTAAATTGA
37455970 AAAAAGGTAC
1 AAAAAGGTAC
37455980 AAAACTTGTG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 15 0.62
18 9 0.38
ACGTcount: A:0.55, C:0.07, G:0.18, T:0.20
Consensus pattern (18 bp):
AAAAAGGTACTAAATTGA
Found at i:37457114 original size:21 final size:21
Alignment explanation
Indices: 37457090--37457146 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
37457080 TTGTGTTTAC
37457090 TTTCCGTTTAGCTCTTACGAG
1 TTTCCGTTTAGCTCTTACGAG
** * * *
37457111 TTTCTATTTAACTCATATGAG
1 TTTCCGTTTAGCTCTTACGAG
*
37457132 TTTCCGTTCAGCTCT
1 TTTCCGTTTAGCTCT
37457147 ATTGAGCTTC
Statistics
Matches: 26, Mismatches: 10, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.18, C:0.23, G:0.14, T:0.46
Consensus pattern (21 bp):
TTTCCGTTTAGCTCTTACGAG
Found at i:37457163 original size:42 final size:42
Alignment explanation
Indices: 37457090--37457183 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 42
37457080 TTGTGTTTAC
* * *
37457090 TTTCCGTTTAGCTCTTACGAGTTTCTATTTAACTCATATGAG
1 TTTCCGTTCAGCTCTTACGAGCTTCTATTTAACCCATATGAG
* * * *
37457132 TTTCCGTTCAGCTC-TATTGAGCTTCTGTTTAACCCTTATGGG
1 TTTCCGTTCAGCTCTTA-CGAGCTTCTATTTAACCCATATGAG
*
37457174 TTTTCGTTCA
1 TTTCCGTTCA
37457184 ACCCTTACAG
Statistics
Matches: 43, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
41 2 0.05
42 41 0.95
ACGTcount: A:0.17, C:0.21, G:0.16, T:0.46
Consensus pattern (42 bp):
TTTCCGTTCAGCTCTTACGAGCTTCTATTTAACCCATATGAG
Found at i:37458634 original size:39 final size:39
Alignment explanation
Indices: 37458580--37458734 Score: 229
Period size: 39 Copynumber: 3.9 Consensus size: 39
37458570 AACATGTTTT
*
37458580 TGAGTATTGTGATATATGCTTGAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
37458619 TGAGTATTGTGATATATGTTTAAATGTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
*
37458658 TGAGTATTGTGATATATGCTTAAATTTTATGTGATTATA
1 TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
* * * * *
37458697 TGTGTAATGTGATACATGCTTAAAAGTGAATGTGATTA
1 TGAGTATTGTGATATATGCTTAAATGT-TATGTGATTA
37458735 CCATGTAAAT
Statistics
Matches: 105, Mismatches: 10, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 96 0.91
40 9 0.09
ACGTcount: A:0.31, C:0.03, G:0.21, T:0.45
Consensus pattern (39 bp):
TGAGTATTGTGATATATGCTTAAATGTTATGTGATTATA
Found at i:37459560 original size:113 final size:113
Alignment explanation
Indices: 37459362--37459597 Score: 418
Period size: 113 Copynumber: 2.1 Consensus size: 113
37459352 CCTATCACGA
* *
37459362 GTATCGATCCTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCGATATTTTGTTGTGTTTTT
1 GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
* *
37459427 ATTTTAGACAATAAACAGAATGCTGATTTGGTACTGACTTTCCATATG
66 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
* *
37459475 GTATCGATACTCGGGGTAATTTTATCGATACTTTTTCAGTTGTACCAATATTTTGTTGTGTTTTT
1 GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
37459540 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
66 ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
37459588 GTATCGATAC
1 GTATCGATAC
37459598 CGTAAAAGGA
Statistics
Matches: 117, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
113 117 1.00
ACGTcount: A:0.26, C:0.14, G:0.17, T:0.42
Consensus pattern (113 bp):
GTATCGATACTCGGGGTAATTTTATCAATACTTTTTCAATTGTACCAATATTTTGTTGTGTTTTT
ATTTTAGACAAAAAACAGAATGCTGATTTGGCACTGACTTTCCATATG
Found at i:37464621 original size:33 final size:33
Alignment explanation
Indices: 37464537--37464624 Score: 106
Period size: 33 Copynumber: 2.7 Consensus size: 33
37464527 CATAAAGATA
* * *
37464537 AAGTCCACCAGGACAGTAAACACGAAACAGAGT
1 AAGTACACTAGGACAATAAACACGAAACAGAGT
* * *
37464570 AAGTTCACTGGGATAATAAACACGAAACAGAGT
1 AAGTACACTAGGACAATAAACACGAAACAGAGT
37464603 AAGTACA-TAAGGACAATAAACA
1 AAGTACACT-AGGACAATAAACA
37464625 TGAGGTAAGC
Statistics
Matches: 46, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
32 1 0.02
33 45 0.98
ACGTcount: A:0.49, C:0.18, G:0.19, T:0.14
Consensus pattern (33 bp):
AAGTACACTAGGACAATAAACACGAAACAGAGT
Found at i:37469518 original size:4 final size:4
Alignment explanation
Indices: 37469509--37469958 Score: 506
Period size: 4 Copynumber: 112.5 Consensus size: 4
37469499 TATAATTCAA
* * *
37469509 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AGAC AGAC AGAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
37469557 ATAC ATAC ATAC ATAC ATGC ATAC ATAC ATAC ATAT ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
37469605 ATAC ATGC ATGC ATGC ATGC ATAC ATAC ATGC GTAC GTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
37469653 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATCC ATCC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * *
37469701 ATAC ATAC ATAC ATAC ATAC ATAC AGAC ATAC ATAC ATCC ATCC ATCC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * ** * *
37469749 ATAC ATAC AT-C TATAC ATGC ATCC ATAC ATGC ATGC ATGT ATGC ATTC
1 ATAC ATAC ATAC -ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* ** * * * * * * *
37469797 ATGC ATGT ATGC ATTC ATGC ATGC ATGC ATGC ATAC ATAC ATAC GTAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * *
37469845 ATAC ATAC ATAC GTAC GTAC GTAC GTAC ATAC ATAC CTAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
37469893 ATAC ATAC ACAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
37469941 ATAC ATAC ATAC ATAC AT
1 ATAC ATAC ATAC ATAC AT
37469959 CACTTATACT
Statistics
Matches: 405, Mismatches: 39, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
3 1 0.00
4 403 1.00
5 1 0.00
ACGTcount: A:0.42, C:0.26, G:0.06, T:0.25
Consensus pattern (4 bp):
ATAC
Found at i:37470543 original size:21 final size:21
Alignment explanation
Indices: 37470495--37470554 Score: 79
Period size: 21 Copynumber: 3.0 Consensus size: 21
37470485 TAAATATGCC
*
37470495 AACAGAAGCTCG-AA-AACTG
1 AACAGAAGCTCGTAAGAGCTG
* *
37470514 AATAAAAGCTCGTAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
37470535 AACAGAAGCTCGTAAGAGCT
1 AACAGAAGCTCGTAAGAGCT
37470555 AATCCACCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
19 10 0.29
20 2 0.06
21 22 0.65
ACGTcount: A:0.43, C:0.18, G:0.23, T:0.15
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:37471631 original size:12 final size:12
Alignment explanation
Indices: 37471614--37471641 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
37471604 TTCTTTATTT
37471614 ATTAATCAATCC
1 ATTAATCAATCC
37471626 ATTAATCAATCC
1 ATTAATCAATCC
37471638 ATTA
1 ATTA
37471642 TAATTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.43, C:0.21, G:0.00, T:0.36
Consensus pattern (12 bp):
ATTAATCAATCC
Found at i:37488487 original size:15 final size:15
Alignment explanation
Indices: 37488469--37488508 Score: 62
Period size: 15 Copynumber: 2.7 Consensus size: 15
37488459 AAATATTTTT
37488469 TTATAAAATTCTAAA
1 TTATAAAATTCTAAA
*
37488484 TTATATAATTCTAAA
1 TTATAAAATTCTAAA
*
37488499 TTTTAAAATT
1 TTATAAAATT
37488509 TCAAAATAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.47, C:0.05, G:0.00, T:0.47
Consensus pattern (15 bp):
TTATAAAATTCTAAA
Found at i:37489182 original size:29 final size:31
Alignment explanation
Indices: 37489126--37489184 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 31
37489116 ATCTCAAAAT
* *
37489126 TATACATGAACTTTGATTTAGTGTGCAATTG
1 TATACATGAACTTTAATTTAGTATGCAATTG
37489157 TATACATGAACTTTAATTT-G-ATGCAATT
1 TATACATGAACTTTAATTTAGTATGCAATT
37489185 ATACACCTGA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 7 0.27
30 1 0.04
31 18 0.69
ACGTcount: A:0.32, C:0.10, G:0.15, T:0.42
Consensus pattern (31 bp):
TATACATGAACTTTAATTTAGTATGCAATTG
Found at i:37489195 original size:29 final size:30
Alignment explanation
Indices: 37489123--37489204 Score: 73
Period size: 31 Copynumber: 2.7 Consensus size: 30
37489113 TAAATCTCAA
* *
37489123 AATTATACA-TGAACTTTGATTTAGTGTGC
1 AATTATACACTGAACTTTAATTTAGTATGC
37489152 AATTGTATACA-TGAACTTTAATTT-G-ATGC
1 AA-T-TATACACTGAACTTTAATTTAGTATGC
*
37489181 AATTATACACCTGAAACTCTAATT
1 AATTATACA-CTG-AACTTTAATT
37489205 GTGGTTCAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
27 6 0.13
28 1 0.02
29 9 0.20
30 11 0.24
31 18 0.40
ACGTcount: A:0.35, C:0.13, G:0.12, T:0.39
Consensus pattern (30 bp):
AATTATACACTGAACTTTAATTTAGTATGC
Found at i:37489419 original size:29 final size:30
Alignment explanation
Indices: 37489376--37489432 Score: 98
Period size: 29 Copynumber: 1.9 Consensus size: 30
37489366 GAATTGGATC
37489376 AAATCAAAATTTTATGTATAAAATTACACA
1 AAATCAAAATTTTATGTATAAAATTACACA
*
37489406 AAATCAAAA-TTTATGTATACAATTACA
1 AAATCAAAATTTTATGTATAAAATTACA
37489433 TATTAAACCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 17 0.65
30 9 0.35
ACGTcount: A:0.53, C:0.11, G:0.04, T:0.33
Consensus pattern (30 bp):
AAATCAAAATTTTATGTATAAAATTACACA
Found at i:37489936 original size:18 final size:20
Alignment explanation
Indices: 37489900--37489993 Score: 66
Period size: 20 Copynumber: 4.6 Consensus size: 20
37489890 AAAATTTATA
37489900 TTACCATATATATTGATATG
1 TTACCATATATATTGATATG
* *
37489920 TTACCGTATATA-T-ATATT
1 TTACCATATATATTGATATG
* * * * *
37489938 TTACCATACAAAATAATATT
1 TTACCATATATATTGATATG
*
37489958 TTACCTTATATATCAATTGATTTG
1 TTACC--ATATAT--ATTGATATG
37489982 TTACCATATATA
1 TTACCATATATA
37489994 GATACGTATA
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
18 13 0.23
19 2 0.04
20 22 0.39
22 10 0.18
24 10 0.18
ACGTcount: A:0.37, C:0.13, G:0.05, T:0.45
Consensus pattern (20 bp):
TTACCATATATATTGATATG
Found at i:37491641 original size:14 final size:14
Alignment explanation
Indices: 37491622--37491653 Score: 64
Period size: 14 Copynumber: 2.3 Consensus size: 14
37491612 CCACATTACA
37491622 TAGTTCGACTATTT
1 TAGTTCGACTATTT
37491636 TAGTTCGACTATTT
1 TAGTTCGACTATTT
37491650 TAGT
1 TAGT
37491654 CACTCTTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50
Consensus pattern (14 bp):
TAGTTCGACTATTT
Found at i:37496142 original size:36 final size:36
Alignment explanation
Indices: 37496102--37496178 Score: 120
Period size: 36 Copynumber: 2.1 Consensus size: 36
37496092 AGTCATTGAT
*
37496102 CGATTAAGTAGATATGACCACGTG-TTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
37496138 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
*
37496174 TGATT
1 CGATT
37496179 GTGTAGCTCT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
36 36 0.95
37 2 0.05
ACGTcount: A:0.34, C:0.16, G:0.21, T:0.30
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
Found at i:37496826 original size:36 final size:36
Alignment explanation
Indices: 37496759--37496835 Score: 104
Period size: 36 Copynumber: 2.1 Consensus size: 36
37496749 AGTCATTGAT
*
37496759 CGATTAAGTAGATATGACAACTTGTTGGTAATCAAC
1 CGATTAAGTAGATATGACAACGTGTTGGTAATCAAC
37496795 CGATTAAGTAGATATGA-ACACGTGCTT-GTAATCAAC
1 CGATTAAGTAGATATGACA-ACGTG-TTGGTAATCAAC
*
37496831 TGATT
1 CGATT
37496836 GTGTAGCTCT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
35 1 0.03
36 34 0.92
37 2 0.05
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.31
Consensus pattern (36 bp):
CGATTAAGTAGATATGACAACGTGTTGGTAATCAAC
Found at i:37497131 original size:657 final size:658
Alignment explanation
Indices: 37495893--37497508 Score: 3000
Period size: 657 Copynumber: 2.5 Consensus size: 658
37495883 TAGCTGTTTA
*
37495893 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGTTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
* *
37495958 TGTTTTTGATGTGCATGTGTTTCTTTCTCATTTTGTTCTTTCCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
* * * *
37496023 AGTTATCTGGCAGTTGATTGATCGGAGAAATGTGTTAGTAATTATTGGATAGAAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
37496088 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
37496153 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
* * *
37496218 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAGGTGCTGAGCACGTGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
*
37496283 GTGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
37496348 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
* *
37496413 GATCCGGAAAGTTTGGGATGCATACTTTTGTTTGTTGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
*
37496478 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGAC-GATTGATTGGTGAAACTTGTTA
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACTGATTGATTGGTGAAACTTATTA
37496542 GTAATTAT
651 GTAATTAT
37496550 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
37496615 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
37496680 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
* *
37496745 TGTTAGTCATTGATCGATTAAGTAGATATGACAACTTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
*
37496810 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCATGTTATTAAGTAACGGATTGAG
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
37496875 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
326 TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
*
37496940 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCATGTGACCATGCTTGAGCTACTATCCTTGGA
391 ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
37497005 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
456 CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
*
37497070 GATCTGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
521 GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
37497135 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACAGTTGATTGATTGGTGAAACTTA
586 TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGAC---TGATTGATTGGTGAAACTTA
37497200 TTAGTAATTAT
648 TTAGTAATTAT
37497211 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
1 TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
37497276 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
66 TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
37497341 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
131 AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
37497406 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
196 TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
* * *
37497471 GAACACGTGCTTGTAATCAACTGTTTGAGTAGTTCTGA
261 GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGA
37497509 TCACGTGGTA
Statistics
Matches: 931, Mismatches: 24, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
657 609 0.65
661 322 0.35
ACGTcount: A:0.27, C:0.14, G:0.22, T:0.37
Consensus pattern (658 bp):
TGGAACTGGTTAAATGTTAAAGCATTATAAGTGTTTACAGATCCAGAAAGCTCGGGATGAATACT
TGTTTTTGATGTGCACGTGTTTCTTTCTCATTTTGTTCTTTTCAATATGCACCGCTCAGAGTACT
AGTTATCTGACAGTTGATTGATTGGAGAAACGTGTTAGTAATTATTGGATAGTAGTTATGAGCTT
TGTTAGTCATTGATCGATTAAGTAGATATGACCACGTGTTGGTAATCAACCGATTAAGTAGATAT
GAACACGTGCTTGTAATCAACTGATTGTGTAGCTCTGAGCGCACGTTATTAAGTAACGGATTGAG
TAGTTCCAAGCGCCTTTTAGAAATTAACGGTTAAGTACTGAGCACGCGTTAGCAATTAACATCAC
ATGGTAGTAATTGATGGATTAAGTAGTTATGAGCACGTGACCATGCTTGAGCTACTATCCTTGGA
CTATCAGTACTTGTTATAGTTGCTCATGGAACTGGTTAAATGTTAAAGCATAATAACTGTTTACT
GATCCGGAAAGTTCGGGATGCATACTTTTGTTTGTCGTGCATGTGTTTCTTTCTCATTTTGTTCT
TTCCATATGCACTGCTCAGATAAACTGTACTAGTTCACTGACTGATTGATTGGTGAAACTTATTA
GTAATTAT
Found at i:37497515 original size:36 final size:36
Alignment explanation
Indices: 37497420--37497491 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
37497410 AGTCATTGAT
*
37497420 CGATTAAGTAGATATGACCACGTGTTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGTTGGTAATCAAC
37497456 CGATTAAGTAGATATGAACACGTGCTT-GTAATCAAC
1 CGATTAAGTAGATATGAACACGTG-TTGGTAATCAAC
37497492 TGTTTGAGTA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
36 32 0.94
37 2 0.06
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.28
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGTTGGTAATCAAC
Found at i:37497523 original size:36 final size:36
Alignment explanation
Indices: 37497420--37497523 Score: 109
Period size: 36 Copynumber: 2.9 Consensus size: 36
37497410 AGTCATTGAT
* * *
37497420 CGATTAAGTAGATATGACCACGTGTTGGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
*
37497456 CGATTAAGTAGATATGAACACGTGCTTGTAATCAAC
1 CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
* * * * * * *
37497492 TGTTTGAGTAGTTCTGATCACGTGGTAGTAAT
1 CGATTAAGTAGATATGAACACGTGCTAGTAAT
37497524 TGATGGATTA
Statistics
Matches: 57, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 57 1.00
ACGTcount: A:0.31, C:0.14, G:0.23, T:0.32
Consensus pattern (36 bp):
CGATTAAGTAGATATGAACACGTGCTAGTAATCAAC
Found at i:37497921 original size:36 final size:35
Alignment explanation
Indices: 37497852--37497954 Score: 95
Period size: 36 Copynumber: 3.0 Consensus size: 35
37497842 TGTAATCAAC
* *
37497852 TGATTGTGTAGCTCTGAGCACATGTTAGTAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * * *
37497887 TGGATTGAGTAGTTCTGAGCACTTTTTTGAAATTAA
1 T-GATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
* * *
37497923 TGATCGAGTA---CTGAGCACGTGTTAGCAATTAA
1 TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
37497955 CAGTTTGAGT
Statistics
Matches: 56, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
32 18 0.32
35 9 0.16
36 29 0.52
ACGTcount: A:0.29, C:0.12, G:0.23, T:0.36
Consensus pattern (35 bp):
TGATTGAGTAGCTCTGAGCACATGTTAGAAATTAA
Found at i:37501976 original size:34 final size:35
Alignment explanation
Indices: 37501928--37501996 Score: 131
Period size: 34 Copynumber: 2.0 Consensus size: 35
37501918 CAAGTCTCAG
37501928 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
1 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
37501963 GCAC-AATTGATGCATCTAAGAAAAACAGAAACAT
1 GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
37501997 ACTTATAGTT
Statistics
Matches: 34, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 30 0.88
35 4 0.12
ACGTcount: A:0.49, C:0.17, G:0.16, T:0.17
Consensus pattern (35 bp):
GCACGAATTGATGCATCTAAGAAAAACAGAAACAT
Found at i:37505674 original size:1 final size:1
Alignment explanation
Indices: 37505668--37505750 Score: 166
Period size: 1 Copynumber: 83.0 Consensus size: 1
37505658 TTCTTCCATG
37505668 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
37505733 TTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTT
37505751 ATCTTTTAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 82 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:37519232 original size:19 final size:20
Alignment explanation
Indices: 37519208--37519254 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 20
37519198 GGATGAAAAG
37519208 AGAAAATAGAAACGTA-GAA
1 AGAAAATAGAAACGTAGGAA
**
37519227 AGAAAATA-AAATTTAGGAA
1 AGAAAATAGAAACGTAGGAA
37519246 AGAAAATAG
1 AGAAAATAG
37519255 GAGAGATGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 5 0.21
19 19 0.79
ACGTcount: A:0.64, C:0.02, G:0.19, T:0.15
Consensus pattern (20 bp):
AGAAAATAGAAACGTAGGAA
Found at i:37524306 original size:223 final size:224
Alignment explanation
Indices: 37523917--37524363 Score: 797
Period size: 223 Copynumber: 2.0 Consensus size: 224
37523907 GACTTATTAA
* *
37523917 GTCAATATTCCTACAACACGAAACATCCTTAACTAGCTGGAATGCCAATAATACATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
37523982 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
37524047 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
37524112 ACCATCCAAGTGAATGACCTCAAAACCTT
196 ACCATCCAAGTGAATGACCTCAAAACCTT
* * *
37524141 GTCAATATTCCTACAACACAAAACATCTTTAACTAGTTGGTA-GCCAACAATACATTGATTCCAC
1 GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
* *
37524205 CCTTTATGTCTCGACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
66 CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
* *
37524270 TCGACAAAAAGAACCAGTAAAACATTACTATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
131 TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
*
37524335 ATCATCCAAGTGAATGACCTCAAAACCTT
196 ACCATCCAAGTGAATGACCTCAAAACCTT
37524364 TATTATCTTT
Statistics
Matches: 213, Mismatches: 10, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
223 175 0.82
224 38 0.18
ACGTcount: A:0.40, C:0.24, G:0.11, T:0.24
Consensus pattern (224 bp):
GTCAATATTCCTACAACACAAAACATCCTTAACTAGCTGGAATGCCAACAATACATTGATTCCAC
CCCTTATGTCTCAACTCACCAATACAACACATTATTGTTGTCGGGTATCCAAGATACATATACAA
TCGACAAAAAGAACCAATAAAACATTAATATTATCAAGGAAATTCAAGCCAAGAACAAAGTCGAA
ACCATCCAAGTGAATGACCTCAAAACCTT
Found at i:37525225 original size:30 final size:29
Alignment explanation
Indices: 37525191--37525255 Score: 76
Period size: 30 Copynumber: 2.2 Consensus size: 29
37525181 ATAAATTACA
*
37525191 ATTTAGGCACTAAATTATTTCAAAATTTTC
1 ATTTAGGCACTAAACTA-TTCAAAATTTTC
* * *
37525221 ATTTAAGTCACTAAACTATTCAAAGTTTTT
1 ATTT-AGGCACTAAACTATTCAAAATTTTC
37525251 ATTTA
1 ATTTA
37525256 AGCCACTGCT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
29 1 0.03
30 18 0.60
31 11 0.37
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (29 bp):
ATTTAGGCACTAAACTATTCAAAATTTTC
Found at i:37525256 original size:30 final size:31
Alignment explanation
Indices: 37525198--37525262 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 31
37525188 ACAATTTAGG
* *
37525198 CACTAAATTATTTCAAAATTTTCATTTAAGT
1 CACTAAACTATTTCAAAATTTTCATTTAAGC
* *
37525229 CACTAAACTA-TTCAAAGTTTTTATTTAAGC
1 CACTAAACTATTTCAAAATTTTCATTTAAGC
37525259 CACT
1 CACT
37525263 GCTAATGAGT
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
30 21 0.70
31 9 0.30
ACGTcount: A:0.37, C:0.17, G:0.05, T:0.42
Consensus pattern (31 bp):
CACTAAACTATTTCAAAATTTTCATTTAAGC
Found at i:37533823 original size:18 final size:18
Alignment explanation
Indices: 37533800--37533837 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37533790 ACACAAGGAA
37533800 ATATGTCAATAACAAAAT
1 ATATGTCAATAACAAAAT
*
37533818 ATATGTCAATAACATAAT
1 ATATGTCAATAACAAAAT
37533836 AT
1 AT
37533838 TTCCATAAAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (18 bp):
ATATGTCAATAACAAAAT
Found at i:37539383 original size:58 final size:58
Alignment explanation
Indices: 37539317--37539431 Score: 221
Period size: 58 Copynumber: 2.0 Consensus size: 58
37539307 CCGAACAATC
*
37539317 ACATCTATGTCTTTATTTCTGGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
37539375 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTAT
1 ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTAT
37539432 CTCTCTAATT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.34, C:0.21, G:0.11, T:0.34
Consensus pattern (58 bp):
ACATCTATGTCTTTATTTCTAGGAACCAATCCAACTCTGATAGCTTAGAAAAACTATT
Found at i:37540126 original size:5 final size:5
Alignment explanation
Indices: 37540118--37540150 Score: 57
Period size: 5 Copynumber: 6.6 Consensus size: 5
37540108 TTAAGTATAA
*
37540118 ATATT ATATT ATATT ATTTT ATATT ATATT ATA
1 ATATT ATATT ATATT ATATT ATATT ATATT ATA
37540151 AAAGAAATAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATATT
Found at i:37540816 original size:25 final size:25
Alignment explanation
Indices: 37540782--37540891 Score: 101
Period size: 22 Copynumber: 4.6 Consensus size: 25
37540772 ACTTTAGCAC
**
37540782 GCTCTCTGATTATTAGCACGTTGGT
1 GCTCTCTGATTATTAGCACGTCAGT
37540807 GCTCTCTGATTATTAGCACGTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
*
37540832 GCTCTCTG--T-TTAGCACATCTA-T
1 GCTCTCTGATTATTAGCACGTC-AGT
* *
37540854 GCTCTTTG--TA-TAGCACTTCAGT
1 GCTCTCTGATTATTAGCACGTCAGT
37540876 GCTCTCTG-TTCATTAG
1 GCTCTCTGATT-ATTAG
37540892 TGCATAATAA
Statistics
Matches: 73, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
21 1 0.01
22 34 0.47
23 3 0.04
24 1 0.01
25 34 0.47
ACGTcount: A:0.17, C:0.24, G:0.19, T:0.40
Consensus pattern (25 bp):
GCTCTCTGATTATTAGCACGTCAGT
Found at i:37546201 original size:14 final size:14
Alignment explanation
Indices: 37546182--37546209 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
37546172 ATGAATCTAT
37546182 ACTTTGCTTGCTCA
1 ACTTTGCTTGCTCA
37546196 ACTTTGCTTGCTCA
1 ACTTTGCTTGCTCA
37546210 TAAGACAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.29, G:0.14, T:0.43
Consensus pattern (14 bp):
ACTTTGCTTGCTCA
Found at i:37553774 original size:2 final size:2
Alignment explanation
Indices: 37553767--37553792 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
37553757 ACTGCCATTT
37553767 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
37553793 ATTACGTCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37560920 original size:16 final size:16
Alignment explanation
Indices: 37560899--37560934 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
37560889 TTTGATTCGC
*
37560899 TGTATTGGATTAGAGT
1 TGTATTGGATTAGAGA
37560915 TGTATTGGATTAGAGA
1 TGTATTGGATTAGAGA
37560931 TGTA
1 TGTA
37560935 ATAGCAAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.42
Consensus pattern (16 bp):
TGTATTGGATTAGAGA
Found at i:37561191 original size:18 final size:17
Alignment explanation
Indices: 37561170--37561204 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561160 TTATTATTAA
*
37561170 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561188 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561205 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37561341 original size:156 final size:156
Alignment explanation
Indices: 37561057--37562801 Score: 3445
Period size: 156 Copynumber: 11.2 Consensus size: 156
37561047 TAGAATACCC
* * * * *
37561057 TTAGCATAAATTTGTTTTGGTAAATGATTATTGTTATTGTTCTTTAAATTTTAATAACATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561122 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561187 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561213 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561278 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561343 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561369 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561434 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561499 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561525 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561590 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561655 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561681 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561746 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561811 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561837 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37561902 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37561967 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37561993 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37562058 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37562123 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37562149 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37562214 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37562279 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37562305 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37562370 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37562435 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37562461 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37562526 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37562591 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37562617 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
1 TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
37562682 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
66 TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
37562747 TATATAATTTAATAAAATTCTTATAA
131 TATATAATTTAATAAAATTCTTATAA
37562773 TTAGCAGAAAATTGTTTTGGTAAATGATT
1 TTAGCAGAAAATTGTTTTGGTAAATGATT
37562802 CGTTCAAATA
Statistics
Matches: 1584, Mismatches: 5, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
156 1584 1.00
ACGTcount: A:0.43, C:0.03, G:0.07, T:0.47
Consensus pattern (156 bp):
TTAGCAGAAAATTGTTTTGGTAAATGATTATTGTTAATGTTATTTAAATTTTAATAAGATTATTA
TTATCAGTAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAA
TATATAATTTAATAAAATTCTTATAA
Found at i:37561347 original size:18 final size:17
Alignment explanation
Indices: 37561326--37561360 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561316 TTATTATTAA
*
37561326 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561344 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561361 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37561503 original size:18 final size:17
Alignment explanation
Indices: 37561482--37561516 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561472 TTATTATTAA
*
37561482 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561500 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561517 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37561659 original size:18 final size:17
Alignment explanation
Indices: 37561638--37561672 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561628 TTATTATTAA
*
37561638 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561656 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561673 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37561815 original size:18 final size:17
Alignment explanation
Indices: 37561794--37561828 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561784 TTATTATTAA
*
37561794 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561812 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561829 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37561971 original size:18 final size:17
Alignment explanation
Indices: 37561950--37561984 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37561940 TTATTATTAA
*
37561950 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37561968 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37561985 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37562127 original size:18 final size:17
Alignment explanation
Indices: 37562106--37562140 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37562096 TTATTATTAA
*
37562106 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37562124 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37562141 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37562283 original size:18 final size:17
Alignment explanation
Indices: 37562262--37562296 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37562252 TTATTATTAA
*
37562262 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37562280 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37562297 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37562439 original size:18 final size:17
Alignment explanation
Indices: 37562418--37562452 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37562408 TTATTATTAA
*
37562418 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37562436 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37562453 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37562595 original size:18 final size:17
Alignment explanation
Indices: 37562574--37562608 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37562564 TTATTATTAA
*
37562574 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37562592 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37562609 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37562751 original size:18 final size:17
Alignment explanation
Indices: 37562730--37562764 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
37562720 TTATTATTAA
*
37562730 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
37562748 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
37562765 TCTTATAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:37572583 original size:78 final size:77
Alignment explanation
Indices: 37572490--37572633 Score: 236
Period size: 79 Copynumber: 1.9 Consensus size: 77
37572480 CACGCAAAAC
*
37572490 TAATATTCCGTTCAATCAATAAAAA-TGAATATTGCATGAAAATCCTAATCTATCACAAGAAAAG
1 TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTAT--CAAGAAAAG
37572554 TCATAACTCAAATT
64 TCATAACTCAAATT
* *
37572568 TAATATTTCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATTTATCAAGAAAAGTC
1 TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTATCAAGAAAAGTC
37572633 A
66 A
37572634 CAATCTGAAT
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
77 12 0.19
78 23 0.37
79 27 0.44
ACGTcount: A:0.47, C:0.15, G:0.08, T:0.31
Consensus pattern (77 bp):
TAATATTCCATTCAATCAATAAAAATTGAATATTGCATGAAAATCCTAATCTATCAAGAAAAGTC
ATAACTCAAATT
Found at i:37572875 original size:20 final size:18
Alignment explanation
Indices: 37572850--37572934 Score: 72
Period size: 17 Copynumber: 4.9 Consensus size: 18
37572840 GGATGAAAAG
37572850 AAATTAATTTATTTTTATA
1 AAATTAATTT-TTTTTATA
37572869 TAAATTAA-TTTTTTTATA
1 -AAATTAATTTTTTTTATA
* *
37572887 AAA-TAATTTTTCTCATA
1 AAATTAATTTTTTTTATA
*
37572904 AAA-TAA-CTTTTTTAT-
1 AAATTAATTTTTTTTATA
* *
37572919 AAAGTATTTTTTTTTA
1 AAATTAATTTTTTTTA
37572935 AATTATGGAA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
15 3 0.05
16 11 0.20
17 24 0.44
18 8 0.15
19 2 0.04
20 7 0.13
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (18 bp):
AAATTAATTTTTTTTATA
Found at i:37572890 original size:17 final size:16
Alignment explanation
Indices: 37572860--37572936 Score: 84
Period size: 16 Copynumber: 4.8 Consensus size: 16
37572850 AAATTAATTT
* *
37572860 ATTTTTATATAAATTA
1 ATTTTTTTATAAAATA
37572876 ATTTTTTTATAAAATA
1 ATTTTTTTATAAAATA
*
37572892 ATTTTTCTCATAAAATA
1 ATTTTT-TTATAAAATA
* *
37572909 ACTTTTTTATAAAGT-
1 ATTTTTTTATAAAATA
*
37572924 ATTTTTTTTTAAA
1 ATTTTTTTATAAA
37572937 TTATGGAATC
Statistics
Matches: 52, Mismatches: 8, Indels: 3
0.83 0.13 0.05
Matches are distributed among these distances:
15 11 0.21
16 27 0.52
17 14 0.27
ACGTcount: A:0.39, C:0.04, G:0.01, T:0.56
Consensus pattern (16 bp):
ATTTTTTTATAAAATA
Found at i:37572915 original size:33 final size:32
Alignment explanation
Indices: 37572860--37572930 Score: 88
Period size: 33 Copynumber: 2.2 Consensus size: 32
37572850 AAATTAATTT
* *
37572860 ATTTTTATATAAATTAATTTTTTTATAAAATA
1 ATTTTTATATAAAATAACTTTTTTATAAAATA
* *
37572892 ATTTTTCTCATAAAATAACTTTTTTATAAAGTA
1 ATTTTTAT-ATAAAATAACTTTTTTATAAAATA
*
37572925 TTTTTT
1 ATTTTT
37572931 TTTAAATTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
32 7 0.21
33 26 0.79
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.56
Consensus pattern (32 bp):
ATTTTTATATAAAATAACTTTTTTATAAAATA
Found at i:37576257 original size:23 final size:24
Alignment explanation
Indices: 37576208--37576257 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
37576198 CAATCATAGT
*
37576208 ATTGCATCGAAGTGTCACATTTCA
1 ATTGCACCGAAGTGTCACATTTCA
37576232 ATTGCACCGAAGTGTCAC-TTTCA
1 ATTGCACCGAAGTGTCACATTTCA
37576255 ATT
1 ATT
37576258 TCACGCATAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
23 8 0.32
24 17 0.68
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (24 bp):
ATTGCACCGAAGTGTCACATTTCA
Found at i:37591355 original size:33 final size:33
Alignment explanation
Indices: 37591318--37591395 Score: 95
Period size: 33 Copynumber: 2.4 Consensus size: 33
37591308 TGGCCCTGCC
* *
37591318 ATGGTCTTACACTCATAATGCCATAACCCAGTT
1 ATGGTCTTACACTCAGAATGCCATAACCCAGCT
* * *
37591351 ATGGTCTTATTA-TCAGGATGCCATAGCCCAGCT
1 ATGGTCTTA-CACTCAGAATGCCATAACCCAGCT
37591384 ATGGTCTTACAC
1 ATGGTCTTACAC
37591396 GTATACATTT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
32 1 0.03
33 35 0.95
34 1 0.03
ACGTcount: A:0.27, C:0.26, G:0.17, T:0.31
Consensus pattern (33 bp):
ATGGTCTTACACTCAGAATGCCATAACCCAGCT
Found at i:37591485 original size:105 final size:101
Alignment explanation
Indices: 37591316--37591532 Score: 292
Period size: 105 Copynumber: 2.1 Consensus size: 101
37591306 CATGGCCCTG
* * * * *
37591316 CCATGGTCTTACACTCATAATGCCATAACCCAGTTATGGTCTTATTATCAGGATGCCATAGCCCA
1 CCATGGTCTTACACTCATAATGCCATAACCCAATTATGGTCTTATCATCAGAATACCACAGCCCA
**
37591381 GCTATGGTCTTACACGTATACATTTACTGCCATGGTCCAA
66 GCTATGGTCTTACA--TATA-A-GCACTGCCATGGTCCAA
* *
37591421 CCATGGTCTTACATTCA-AGGTGCCATAACCCAATTATGGTCTTATCATCAGAATACCACAGCCC
1 CCATGGTCTTACACTCATA-ATGCCATAACCCAATTATGGTCTTATCATCAGAATACCACAGCCC
*
37591485 AGCTATGGTCTTACATATAAGCACTGTCATGGTCCAA
65 AGCTATGGTCTTACATATAAGCACTGCCATGGTCCAA
37591522 CCATGGTCTTA
1 CCATGGTCTTA
37591533 TCCATCAATT
Statistics
Matches: 101, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
101 25 0.25
102 1 0.01
103 4 0.04
104 1 0.01
105 70 0.69
ACGTcount: A:0.28, C:0.27, G:0.16, T:0.29
Consensus pattern (101 bp):
CCATGGTCTTACACTCATAATGCCATAACCCAATTATGGTCTTATCATCAGAATACCACAGCCCA
GCTATGGTCTTACATATAAGCACTGCCATGGTCCAA
Found at i:37596754 original size:20 final size:21
Alignment explanation
Indices: 37596707--37596755 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
37596697 ATACATATGC
37596707 ATTAAAATAATTAAATATAAA
1 ATTAAAATAATTAAATATAAA
* *
37596728 ATAAAAATAATT-AGTATAAA
1 ATTAAAATAATTAAATATAAA
*
37596748 TTTAAAAT
1 ATTAAAAT
37596756 CGAAAGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 13 0.54
21 11 0.46
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (21 bp):
ATTAAAATAATTAAATATAAA
Found at i:37598064 original size:120 final size:121
Alignment explanation
Indices: 37597921--37598163 Score: 470
Period size: 120 Copynumber: 2.0 Consensus size: 121
37597911 AATTAGGATC
37597921 AATCGAGACTATTTGTAAAATTTGAAGGTTAATTTTTAAAATTATAACTAAATTAATATAATATA
1 AATCGAGACTA-TTGTAAAATTTGAAGGTTAATTTTTAAAATTATAACTAAATTAATATAATATA
37597986 TAAAAGTTGAGGACTAAATTTATTATTATACCGATTTTTTATCTAAATGAATAAAAA
65 TAAAAGTTGAGGACTAAATTTATTATTATACCGATTTTTTATCTAAATGAATAAAAA
37598043 AATCGAGACTA-TGTAAAATTTGAAGGTTAATTTTTAAAATTATAACTAAATTAATATAATATAT
1 AATCGAGACTATTGTAAAATTTGAAGGTTAATTTTTAAAATTATAACTAAATTAATATAATATAT
37598107 AAAAGTTGAGGACTAAATTTATTATTATACCGATTTTTTATCTAAATGAATAAAAA
66 AAAAGTTGAGGACTAAATTTATTATTATACCGATTTTTTATCTAAATGAATAAAAA
37598163 A
1 A
37598164 GAAATAAACT
Statistics
Matches: 121, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
120 110 0.91
122 11 0.09
ACGTcount: A:0.46, C:0.06, G:0.10, T:0.39
Consensus pattern (121 bp):
AATCGAGACTATTGTAAAATTTGAAGGTTAATTTTTAAAATTATAACTAAATTAATATAATATAT
AAAAGTTGAGGACTAAATTTATTATTATACCGATTTTTTATCTAAATGAATAAAAA
Found at i:37598956 original size:31 final size:31
Alignment explanation
Indices: 37598921--37598983 Score: 83
Period size: 31 Copynumber: 2.0 Consensus size: 31
37598911 AACCTAATGG
37598921 CTTAAAT-AAAGACTTTCAAATAGTTCAGTGA
1 CTTAAATGAAA-ACTTTCAAATAGTTCAGTGA
* * *
37598952 CTTAAATGAAAATTTTCCAATTGTTCAGTGA
1 CTTAAATGAAAACTTTCAAATAGTTCAGTGA
37598983 C
1 C
37598984 CATTTTGTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 25 0.89
32 3 0.11
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (31 bp):
CTTAAATGAAAACTTTCAAATAGTTCAGTGA
Found at i:37606287 original size:54 final size:54
Alignment explanation
Indices: 37606210--37606317 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
37606200 GCTACTGCAC
37606210 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
1 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
37606264 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
1 ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
37606318 CTTATCAAAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.30
Consensus pattern (54 bp):
ATGAGAAAGAGAAAAACATCAAGATCTAAATTGCAGATTACTTTTATATTACTG
Found at i:37607084 original size:25 final size:25
Alignment explanation
Indices: 37607066--37607142 Score: 154
Period size: 25 Copynumber: 3.1 Consensus size: 25
37607056 GAACGAATGA
37607066 ATAAAAAGATTAAAAGAACAAATTC
1 ATAAAAAGATTAAAAGAACAAATTC
37607091 ATAAAAAGATTAAAAGAACAAATTC
1 ATAAAAAGATTAAAAGAACAAATTC
37607116 ATAAAAAGATTAAAAGAACAAATTC
1 ATAAAAAGATTAAAAGAACAAATTC
37607141 AT
1 AT
37607143 GCCTTCCGCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 52 1.00
ACGTcount: A:0.64, C:0.08, G:0.08, T:0.21
Consensus pattern (25 bp):
ATAAAAAGATTAAAAGAACAAATTC
Found at i:37638497 original size:26 final size:26
Alignment explanation
Indices: 37638448--37638497 Score: 66
Period size: 26 Copynumber: 1.9 Consensus size: 26
37638438 CTATTTGAAA
*
37638448 TTAATAAAAAAATATGTTACTAATTT
1 TTAATAAAAAAATATATTACTAATTT
*
37638474 TTAA-AAAAAAATATTATTATTAAT
1 TTAATAAAAAAATA-TATTACTAAT
37638498 AGAAATCATA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 12 0.57
ACGTcount: A:0.54, C:0.02, G:0.02, T:0.42
Consensus pattern (26 bp):
TTAATAAAAAAATATATTACTAATTT
Found at i:37643176 original size:5 final size:5
Alignment explanation
Indices: 37643166--37643191 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
37643156 TGAGCATTTG
37643166 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
37643192 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:37643724 original size:29 final size:29
Alignment explanation
Indices: 37643665--37643724 Score: 68
Period size: 30 Copynumber: 2.1 Consensus size: 29
37643655 GGATGGGAAG
* **
37643665 GGAATAAAAGTTTTAGGGGAAAAGTGGGA
1 GGAATAAAAATTTTAGGGGAAAAGTAAGA
*
37643694 GGAAGTAAAAATTTTGGGGGAAAA-TAAGA
1 GGAA-TAAAAATTTTAGGGGAAAAGTAAGA
37643723 GG
1 GG
37643725 TTTTGAGGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.43, C:0.00, G:0.37, T:0.20
Consensus pattern (29 bp):
GGAATAAAAATTTTAGGGGAAAAGTAAGA
Found at i:37644060 original size:9 final size:9
Alignment explanation
Indices: 37644043--37644073 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
37644033 TCGAGTTGAT
37644043 TCGAATAAC
1 TCGAATAAC
*
37644052 TCGATTAAC
1 TCGAATAAC
37644061 TCGAATAAC
1 TCGAATAAC
37644070 TCGA
1 TCGA
37644074 TTCGTTTAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.13, T:0.26
Consensus pattern (9 bp):
TCGAATAAC
Found at i:37647776 original size:20 final size:20
Alignment explanation
Indices: 37647751--37647808 Score: 73
Period size: 20 Copynumber: 2.9 Consensus size: 20
37647741 GTACAGGTTA
37647751 GCACTTCGGTGCCTCTGTTT
1 GCACTTCGGTGCCTCTGTTT
*
37647771 GCACTTTGGTGTCCT-TGTTT
1 GCACTTCGGTG-CCTCTGTTT
* *
37647791 ACACTTCGATGCCTCTGT
1 GCACTTCGGTGCCTCTGT
37647809 ATAGCATTAC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 3 0.09
20 26 0.81
21 3 0.09
ACGTcount: A:0.09, C:0.28, G:0.22, T:0.41
Consensus pattern (20 bp):
GCACTTCGGTGCCTCTGTTT
Found at i:37660101 original size:23 final size:23
Alignment explanation
Indices: 37660075--37660164 Score: 98
Period size: 23 Copynumber: 4.1 Consensus size: 23
37660065 GAAAAGTTAA
37660075 AAGAGTGAAGAGACTTGAATATG
1 AAGAGTGAAGAGACTTGAATATG
*
37660098 AAGAGTGAAGAGACTTGAAGATG
1 AAGAGTGAAGAGACTTGAATATG
* * * * *
37660121 AAAAGT-TACACAC---ATTATG
1 AAGAGTGAAGAGACTTGAATATG
37660140 AAGAGTGAAGAGACTTGAATATG
1 AAGAGTGAAGAGACTTGAATATG
37660163 AA
1 AA
37660165 AAGTTATACN
Statistics
Matches: 51, Mismatches: 12, Indels: 8
0.72 0.17 0.11
Matches are distributed among these distances:
19 9 0.18
20 4 0.08
22 4 0.08
23 34 0.67
ACGTcount: A:0.46, C:0.07, G:0.27, T:0.21
Consensus pattern (23 bp):
AAGAGTGAAGAGACTTGAATATG
Found at i:37666539 original size:34 final size:34
Alignment explanation
Indices: 37666496--37666564 Score: 138
Period size: 34 Copynumber: 2.0 Consensus size: 34
37666486 CTCTTTGCCA
37666496 TTGACTGCCTCTAGATGTATTAATGTCCAGAGAG
1 TTGACTGCCTCTAGATGTATTAATGTCCAGAGAG
37666530 TTGACTGCCTCTAGATGTATTAATGTCCAGAGAG
1 TTGACTGCCTCTAGATGTATTAATGTCCAGAGAG
37666564 T
1 T
37666565 GAATACTGCA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.17, G:0.23, T:0.33
Consensus pattern (34 bp):
TTGACTGCCTCTAGATGTATTAATGTCCAGAGAG
Found at i:37672932 original size:48 final size:49
Alignment explanation
Indices: 37672828--37672946 Score: 134
Period size: 48 Copynumber: 2.4 Consensus size: 49
37672818 TTAATCACTT
* * * *
37672828 TAATATT-AATTAAATATAATACTTATCAAGATAAATATTAAATTAAATT
1 TAATATTAAATTTAATAAAATAC-CATCAAGATAAATATTAAATTAAATG
* * *
37672877 TAATATTAAA-TTAATAAAATACCATCAATATAAGTATTGAATTAAATG
1 TAATATTAAATTTAATAAAATACCATCAAGATAAATATTAAATTAAATG
* *
37672925 TACTATTAAATTTATTAAAATA
1 TAATATTAAATTTAATAAAATA
37672947 AAATTCTTTT
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
48 30 0.51
49 27 0.46
50 2 0.03
ACGTcount: A:0.52, C:0.05, G:0.03, T:0.39
Consensus pattern (49 bp):
TAATATTAAATTTAATAAAATACCATCAAGATAAATATTAAATTAAATG
Found at i:37678036 original size:41 final size:41
Alignment explanation
Indices: 37677979--37678180 Score: 271
Period size: 41 Copynumber: 4.9 Consensus size: 41
37677969 ATTGAGATAA
* *
37677979 TATATCAGGCTCTGTGCCTAGTAGGCTTCGTGCC-AGTGATT
1 TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGA-TGATT
* * *
37678020 TATATCACGCTCTGTGCCTAGCAAGCTTCGTGCCGATGATT
1 TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGATGATT
* * *
37678061 TATATTAGGCTCTATGCCTGGCAAGCTTCGTGCCGATGATT
1 TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGATGATT
* * * *
37678102 TATATTAGGCTCTATGCCTAGCAGGCTTCATGTCGGTGATT
1 TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGATGATT
*
37678143 TATATCAGGCTCTATGCCTAGTAGGCTTCGTGCCGATG
1 TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGATG
37678181 TAATTGTATC
Statistics
Matches: 143, Mismatches: 17, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
41 142 0.99
42 1 0.01
ACGTcount: A:0.19, C:0.23, G:0.25, T:0.34
Consensus pattern (41 bp):
TATATCAGGCTCTATGCCTAGCAGGCTTCGTGCCGATGATT
Found at i:37683383 original size:8 final size:8
Alignment explanation
Indices: 37683327--37683397 Score: 54
Period size: 8 Copynumber: 8.6 Consensus size: 8
37683317 GTTTGTATGA
37683327 AAAATTTT
1 AAAATTTT
*
37683335 AAAAATTT
1 AAAATTTT
**
37683343 AGCATTTT
1 AAAATTTT
*
37683351 AGAA-TTT
1 AAAATTTT
* *
37683358 ATTAATTTA
1 A-AAATTTT
37683367 AAATTATTTT
1 AAA--ATTTT
37683377 AAAATTTT
1 AAAATTTT
37683385 AAAATTTT
1 AAAATTTT
37683393 AAAAT
1 AAAAT
37683398 ATTTTGTTTG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
7 4 0.08
8 36 0.72
9 3 0.06
10 7 0.14
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (8 bp):
AAAATTTT
Found at i:37684768 original size:19 final size:21
Alignment explanation
Indices: 37684745--37684798 Score: 60
Period size: 19 Copynumber: 2.7 Consensus size: 21
37684735 AAAAATACAA
37684745 AAAAAATTTAAAATAATTT-T
1 AAAAAATTTAAAATAATTTAT
* *
37684765 AAAAAATTCAAAA-CATTTAT
1 AAAAAATTTAAAATAATTTAT
*
37684785 -AAAAATTTCAAATA
1 AAAAAATTTAAAATA
37684799 TTATATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
19 14 0.52
20 13 0.48
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (21 bp):
AAAAAATTTAAAATAATTTAT
Found at i:37684770 original size:20 final size:19
Alignment explanation
Indices: 37684745--37684798 Score: 56
Period size: 20 Copynumber: 2.8 Consensus size: 19
37684735 AAAAATACAA
37684745 AAAAAATTTAAAATAATTTT
1 AAAAAATTTAAAATAA-TTT
* *
37684765 AAAAAATTCAAAA-CATTT
1 AAAAAATTTAAAATAATTT
*
37684783 ATAAAAATTTCAAATA
1 A-AAAAATTTAAAATA
37684799 TTATATTTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 4 0.15
19 11 0.41
20 12 0.44
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAAAATTTAAAATAATTT
Found at i:37687160 original size:29 final size:30
Alignment explanation
Indices: 37687127--37687206 Score: 90
Period size: 31 Copynumber: 2.7 Consensus size: 30
37687117 GGTTGTTCAC
* *
37687127 ATAAGAGCCAAACATTTCAAAA-TACTCAT
1 ATAAGAGTCAAACATTTCAAAACTACTCAA
* *
37687156 ATAAGAGTCTAACATTTCCAAAACTGCTCAA
1 ATAAGAGTCAAACATTT-CAAAACTACTCAA
* *
37687187 ATAAAAGTCAAACCTTTCAA
1 ATAAGAGTCAAACATTTCAA
37687207 TGTGCTCAAA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
29 15 0.36
30 8 0.19
31 19 0.45
ACGTcount: A:0.46, C:0.21, G:0.07, T:0.25
Consensus pattern (30 bp):
ATAAGAGTCAAACATTTCAAAACTACTCAA
Found at i:37687247 original size:31 final size:31
Alignment explanation
Indices: 37687208--37687280 Score: 92
Period size: 31 Copynumber: 2.4 Consensus size: 31
37687198 ACCTTTCAAT
* * *
37687208 GTGCTCAAATAAGGGCCAAGCCTTTTTGAAA
1 GTGCTCAAATAAGAGCCAAACATTTTTGAAA
* * *
37687239 TTGCTCAAATAAGAGTCAAACATTTTTTAAA
1 GTGCTCAAATAAGAGCCAAACATTTTTGAAA
37687270 GTGCTCAAATA
1 GTGCTCAAATA
37687281 TAGGCTTCTT
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.30
Consensus pattern (31 bp):
GTGCTCAAATAAGAGCCAAACATTTTTGAAA
Found at i:37697812 original size:21 final size:21
Alignment explanation
Indices: 37697728--37697808 Score: 99
Period size: 21 Copynumber: 3.9 Consensus size: 21
37697718 CGAACATGCC
* *
37697728 AACAGAAGCTCATAAGAACTG
1 AACAGAAGCTCAAAAGAGCTG
*
37697749 AACAGAAGCTCAAAAGAGCGG
1 AACAGAAGCTCAAAAGAGCTG
* * *
37697770 AACATAAGTTCAAAAGAGTTG
1 AACAGAAGCTCAAAAGAGCTG
*
37697791 AACAAAAGCTCAAAAGAG
1 AACAGAAGCTCAAAAGAG
37697809 TTGATACACC
Statistics
Matches: 51, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 51 1.00
ACGTcount: A:0.51, C:0.16, G:0.21, T:0.12
Consensus pattern (21 bp):
AACAGAAGCTCAAAAGAGCTG
Found at i:37702952 original size:25 final size:25
Alignment explanation
Indices: 37702898--37702946 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
37702888 TTAGCCCTCT
*
37702898 TGAGCTTCCCATTATATGGTTCTTA
1 TGAGCTTCCCATTATATGGCTCTTA
37702923 TGAGCTTCCCATTATATGGCTCTT
1 TGAGCTTCCCATTATATGGCTCTT
37702947 TGGAGCATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.18, C:0.22, G:0.16, T:0.43
Consensus pattern (25 bp):
TGAGCTTCCCATTATATGGCTCTTA
Found at i:37705486 original size:27 final size:26
Alignment explanation
Indices: 37705442--37705855 Score: 456
Period size: 27 Copynumber: 15.3 Consensus size: 26
37705432 GTAATGGGCC
*
37705442 TAAAAAGACGAAAATACCCTCGAAGGG
1 TAAAATGACG-AAATACCCTCGAAGGG
* *
37705469 TAAAATGACTAAACTACCCTCGAAGGT
1 TAAAATGACGAAA-TACCCTCGAAGGG
37705496 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
37705523 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
**
37705550 TAAAATGACCGAAATACCCTTAAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
* * *
37705577 TAAAATAACCAAAATACCCTCAAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
* *
37705604 TAAAATGACTAAAATACCCTCGAAGGA
1 TAAAATGAC-GAAATACCCTCGAAGGG
37705631 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATGAC-GAAATACCCTCGAAGGG
* **
37705658 TAAAATGATCGAAATACCTTTAAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
* * * *
37705685 TAAAATGACCAAAATACCCCCAAAGGT
1 TAAAATGA-CGAAATACCCTCGAAGGG
37705712 TAAAATGACTGAAATACCC-CTGAAGGG
1 TAAAATGAC-GAAATACCCTC-GAAGGG
* * *
37705739 TAAAATAATCGAAATACCCTTGAAAGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
37705766 TAAAATGATCGAAATACCCTCGAAGGG
1 TAAAATGA-CGAAATACCCTCGAAGGG
37705793 TAAAATGACTGAAATACCC-CTGAAGGG
1 TAAAATGAC-GAAATACCCTC-GAAGGG
*
37705820 TAAAATGATCGAAATACCC-CTGAATGG
1 TAAAATGA-CGAAATACCCTC-GAAGGG
37705847 TAAAATGAC
1 TAAAATGAC
37705856 TGTTATACTC
Statistics
Matches: 342, Mismatches: 34, Indels: 23
0.86 0.09 0.06
Matches are distributed among these distances:
26 9 0.03
27 326 0.95
28 7 0.02
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (26 bp):
TAAAATGACGAAATACCCTCGAAGGG
Found at i:37705581 original size:81 final size:81
Alignment explanation
Indices: 37705442--37705855 Score: 535
Period size: 81 Copynumber: 5.1 Consensus size: 81
37705432 GTAATGGGCC
* * * * *
37705442 TAAAAAGACGAAAATACCCTCGAAGGGTAAAATGACT-AAACTACCCTCGAAGGTTAAAATGACC
1 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAA-TACCCTTGAAGGGTAAAATGATC
37705506 GAAATACCCTCGAAGGG
65 GAAATACCCTCGAAGGG
* * * * * *
37705523 TAAAATGACCGAAATACCCTCGAAGGGTAAAATGACCGAAATACCCTTAAAGGGTAAAATAACCA
1 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGATCG
*
37705588 AAATACCCTCAAAGGG
66 AAATACCCTCGAAGGG
* * *
37705604 TAAAATGACTAAAATACCCTCGAAGGATAAAATGACTGAAATACCCTCGAAGGGTAAAATGATCG
1 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGATCG
* **
37705669 AAATACCTTTAAAGGG
66 AAATACCCTCGAAGGG
* * * * *
37705685 TAAAATGACCAAAATACCCCCAAAGGTTAAAATGACTGAAATACCCCTGAAGGGTAAAATAATCG
1 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGATCG
* *
37705750 AAATACCCTTGAAAGG
66 AAATACCCTCGAAGGG
* * *
37705766 TAAAATGATCGAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCTGAAGGGTAAAATGATCG
1 TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGATCG
*
37705831 AAATACCC-CTGAATGG
66 AAATACCCTC-GAAGGG
37705847 TAAAATGAC
1 TAAAATGAC
37705856 TGTTATACTC
Statistics
Matches: 291, Mismatches: 40, Indels: 4
0.87 0.12 0.01
Matches are distributed among these distances:
81 288 0.99
82 3 0.01
ACGTcount: A:0.44, C:0.19, G:0.18, T:0.18
Consensus pattern (81 bp):
TAAAATGACCAAAATACCCTCGAAGGGTAAAATGACTGAAATACCCTTGAAGGGTAAAATGATCG
AAATACCCTCGAAGGG
Found at i:37706059 original size:26 final size:26
Alignment explanation
Indices: 37706030--37706106 Score: 100
Period size: 26 Copynumber: 3.0 Consensus size: 26
37706020 TTACCACATA
37706030 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * *
37706056 TACTGTTACTGGTAGCTTCGCTGCAT
1 TACTGTTACTGGCAGCTTTGCTGCGT
* * *
37706082 CACTATTATTGGCAGCTTTGCTGCG
1 TACTGTTACTGGCAGCTTTGCTGCG
37706107 ATTTTGGTGT
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.14, C:0.23, G:0.25, T:0.38
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGCTGCGT
Found at i:37706253 original size:33 final size:33
Alignment explanation
Indices: 37706209--37706271 Score: 90
Period size: 33 Copynumber: 1.9 Consensus size: 33
37706199 ATTACTGTAT
* **
37706209 TGTACTGTTACTGTATTTGGCTAAGGCCCACAC
1 TGTACTATTACTGTATGGGGCTAAGGCCCACAC
*
37706242 TGTACTATTACTGTATGGGGCTCAGGCCCA
1 TGTACTATTACTGTATGGGGCTAAGGCCCA
37706272 GACTACTACT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.21, C:0.24, G:0.24, T:0.32
Consensus pattern (33 bp):
TGTACTATTACTGTATGGGGCTAAGGCCCACAC
Found at i:37713674 original size:26 final size:25
Alignment explanation
Indices: 37713637--37713693 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
37713627 ACACACCACA
37713637 ACTCTTATTGAGCACCCCGTTATATG
1 ACTCTTATTGAGCACCCCGTTA-ATG
**
37713663 ACTCTT-TGTGAGCTTCCCGTTAATG
1 ACTCTTAT-TGAGCACCCCGTTAATG
*
37713688 GCTCTT
1 ACTCTT
37713694 CAGAGCTTTC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 9 0.33
26 18 0.67
ACGTcount: A:0.18, C:0.26, G:0.18, T:0.39
Consensus pattern (25 bp):
ACTCTTATTGAGCACCCCGTTAATG
Found at i:37715881 original size:649 final size:650
Alignment explanation
Indices: 37714639--37715943 Score: 2504
Period size: 649 Copynumber: 2.0 Consensus size: 650
37714629 ATTTGATAAT
*
37714639 TGAATATATAAGTTGATGTACCATGTATAAGACTTAGTTTTGGCTTGGTTTAAATGTCTTGGATT
1 TGAATATATAAGTTGATATACCATGTATAAGACTTAGTTTTGGCTTGGTTTAAATGTCTTGGATT
37714704 GGCTTGTGAAAGTGTTTTAAGTGTTTATGTAGGTGGAAGGCAAATTTGGGTGAGAAATATGGCTA
66 GGCTTGTGAAAGTGTTTTAAGTGTTTATGTAGGTGGAAGGCAAATTTGGGTGAGAAATATGGCTA
37714769 GGAAATGACCTTATTTTGTCCACACAAGCAGAGACACGGGCATATGTCTTAGCCTTGTGTGACAC
131 GGAAATGACCTTATTTTGTCCACACAAGCAGAGACACGGGCATATGTCTTAGCCTTGTGTGACAC
37714834 ACGGCGTAGCACATGGGCATGTGTCTTGGCCTTGTGTCCCCTGTATCTTTAAAATTTAGAACAGA
196 ACGGCGTAGCACATGGGCATGTGTCTTGGCCTTGTGTCCCCTGTATCTTTAAAATTTAGAACAGA
37714899 ATTCTTAGGATTTTTCACACGGCCTAACACACGGGTGTGTGGCTTAACCATGTGACCCCTGTAGC
261 ATTCTTAGGATTTTTCACACGGCCTAACACACGGGTGTGTGGCTTAACCATGTGACCCCTGTAGC
* *
37714964 TACACACGGCTTAGCACACGGGTGTGTGACTTGGCCGTGTGACCCAAGTTAGAGAGTTATACGGG
326 TACACACGGCCTAGCACACGGGTGTGTGACTTGGCCGTGTGACCCAAGTCAGAGAGTTATACGGG
*
37715029 TACAGACACGAGTTGGAACACGGGCGTGTGCCCTATTTCGAATGCTCACATGGCTTAGGACACGG
391 TACAGACACGAGTTGGAACACGGGCGTGTGCCCTATTTCAAATGCTCACATGGCTTAGGACACGG
* *
37715094 GAGTGTCACATTAACGTTTGAGCCACACAGTCTGACCACACGGGTGTGTGTCCTCTGCACTTGGG
456 GAGTGTCACATTAACGTGTGAGCCACACAGTCTGACCACACGGGTGTGTGTCCTCTGCACCTGGG
*
37715159 AAAAAATTTTGAAATTTTGCGAAAAAGTCTCTGAGTGCACGGTTTTGTCCCGACTTGTTTCTAAT
521 AAAAAATTTTGAAATTTTGCAAAAAAGTCTCTGAGTGCACGGTTTTGTCCCGACTTGTTTCTAAT
37715224 ACATGATTTGGGTTTCGAGGGCCCATACAAGGGACAATATGATTGAATATAATTTTTTTCTGATA
586 ACATGATTTGGGTTTCGAGGGCCCATACAAGGGACAATATGATTGAATATAATTTTTTTCTGATA
**
37715289 TGAATATATAAGTTGATATGTCATGTATAAGACTTAGTTTTGGCTTGGTTTAAATGTCTTGGATT
1 TGAATATATAAGTTGATATACCATGTATAAGACTTAGTTTTGGCTTGGTTTAAATGTCTTGGATT
37715354 GGCTTGTGAAAGTGTTTTAAGTGTTTATGTAGGTGGAAGGCAAATTTGGGTGAGAAATATGGCTA
66 GGCTTGTGAAAGTGTTTTAAGTGTTTATGTAGGTGGAAGGCAAATTTGGGTGAGAAATATGGCTA
*
37715419 GGAAATGACCTTATTTTGTCCACACAAGCAGAGACACGGGCGTATGTCTTAGCCTTGTGTGACAC
131 GGAAATGACCTTATTTTGTCCACACAAGCAGAGACACGGGCATATGTCTTAGCCTTGTGTGACAC
37715484 ACGGCGTAGCACATGGGCATGTGTCTTGGCCTTGTGTCCCCTGTATCTTTAAAATTTAGAACAGA
196 ACGGCGTAGCACATGGGCATGTGTCTTGGCCTTGTGTCCCCTGTATCTTTAAAATTTAGAACAGA
37715549 ATTCTTAGGATTTTTCACACGGCCTAACACAC-GGTGTGTGGCTTAACCATGTGACCCCTGTAGC
261 ATTCTTAGGATTTTTCACACGGCCTAACACACGGGTGTGTGGCTTAACCATGTGACCCCTGTAGC
*
37715613 TACAGACGGCCTAGCACACGGGTGTGTGACTTGGCCGTGTGACCCAAGTCAGAGAGTTATACGGG
326 TACACACGGCCTAGCACACGGGTGTGTGACTTGGCCGTGTGACCCAAGTCAGAGAGTTATACGGG
37715678 TACAGACACGAGTTGGAACACGGGCGTGTGCCCTATTTCAAATGCTCACATGGCTTAGGACACGG
391 TACAGACACGAGTTGGAACACGGGCGTGTGCCCTATTTCAAATGCTCACATGGCTTAGGACACGG
37715743 GAGTGTCACATTAACGTGTGAGCCACACAGTCTGACCACACGGGTGTGTGTCCTCTGCACCTGGG
456 GAGTGTCACATTAACGTGTGAGCCACACAGTCTGACCACACGGGTGTGTGTCCTCTGCACCTGGG
37715808 AAAAAATTTTGAAATTTTGCAAAAAAGTCTCTGAGTGCACGGTTTTGTCCCGACTTGTTTCTAAT
521 AAAAAATTTTGAAATTTTGCAAAAAAGTCTCTGAGTGCACGGTTTTGTCCCGACTTGTTTCTAAT
37715873 ACATGATTTGGGTTTCGAGGGCCCATACAAGGGACAATATGATTGAATATAATTTTTTTCTGATA
586 ACATGATTTGGGTTTCGAGGGCCCATACAAGGGACAATATGATTGAATATAATTTTTTTCTGATA
37715938 TGAATA
1 TGAATA
37715944 GTAAATGATA
Statistics
Matches: 644, Mismatches: 11, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
649 356 0.55
650 288 0.45
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (650 bp):
TGAATATATAAGTTGATATACCATGTATAAGACTTAGTTTTGGCTTGGTTTAAATGTCTTGGATT
GGCTTGTGAAAGTGTTTTAAGTGTTTATGTAGGTGGAAGGCAAATTTGGGTGAGAAATATGGCTA
GGAAATGACCTTATTTTGTCCACACAAGCAGAGACACGGGCATATGTCTTAGCCTTGTGTGACAC
ACGGCGTAGCACATGGGCATGTGTCTTGGCCTTGTGTCCCCTGTATCTTTAAAATTTAGAACAGA
ATTCTTAGGATTTTTCACACGGCCTAACACACGGGTGTGTGGCTTAACCATGTGACCCCTGTAGC
TACACACGGCCTAGCACACGGGTGTGTGACTTGGCCGTGTGACCCAAGTCAGAGAGTTATACGGG
TACAGACACGAGTTGGAACACGGGCGTGTGCCCTATTTCAAATGCTCACATGGCTTAGGACACGG
GAGTGTCACATTAACGTGTGAGCCACACAGTCTGACCACACGGGTGTGTGTCCTCTGCACCTGGG
AAAAAATTTTGAAATTTTGCAAAAAAGTCTCTGAGTGCACGGTTTTGTCCCGACTTGTTTCTAAT
ACATGATTTGGGTTTCGAGGGCCCATACAAGGGACAATATGATTGAATATAATTTTTTTCTGATA
Found at i:37729683 original size:19 final size:18
Alignment explanation
Indices: 37729659--37729706 Score: 60
Period size: 19 Copynumber: 2.6 Consensus size: 18
37729649 GACGCTCTTT
*
37729659 TTTGCATTCATTTCATGCA
1 TTTGCATTCATGTCAT-CA
37729678 TTTGCATTACATGTCATCA
1 TTTGCATT-CATGTCATCA
*
37729697 TATGCATTCA
1 TTTGCATTCA
37729707 AGATTATTAC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
18 2 0.08
19 17 0.65
20 7 0.27
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (18 bp):
TTTGCATTCATGTCATCA
Found at i:37737051 original size:42 final size:42
Alignment explanation
Indices: 37736992--37737091 Score: 139
Period size: 42 Copynumber: 2.4 Consensus size: 42
37736982 GGCTCAAATA
* * *
37736992 TTGATTAGAATGGGGCATGAAGTGATCAGAGTAACTTGTATC
1 TTGATCAGAATGGGGCATGAAATGATCAGAGCAACTTGTATC
* *
37737034 TTGATCAGAATGGGGCATGAAATGATTAGAGCAGCTTGTATC
1 TTGATCAGAATGGGGCATGAAATGATCAGAGCAACTTGTATC
37737076 TTGATCA-AATCGGGGC
1 TTGATCAGAAT-GGGGC
37737092 GTGTGGTAAT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
41 3 0.06
42 49 0.94
ACGTcount: A:0.30, C:0.12, G:0.29, T:0.29
Consensus pattern (42 bp):
TTGATCAGAATGGGGCATGAAATGATCAGAGCAACTTGTATC
Found at i:37738261 original size:44 final size:41
Alignment explanation
Indices: 37738166--37738320 Score: 102
Period size: 44 Copynumber: 3.6 Consensus size: 41
37738156 GAATTTCAGA
* *
37738166 TCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAA--
1 TCTTATCTCCTTGAGATTACAGTGGAGCAGATT-AA---A-TAAGG
* **
37738210 TCCTATCTCCTTGAGATTACAGTGGAGTGGATTAAAATAAAGG
1 TCTTATCTCCTTGAGATTACAGTGGAGCAGATT-AAAT-AAGG
* ** *
37738253 ATCTTATCT-CTCTGA-AGTTACAGTAGAGCAGATTGTATCAGG
1 -TCTTATCTCCT-TGAGA-TTACAGTGGAGCAGATTAAATAAGG
*
37738295 TCTTATCTCCCTGAGATTACAGTGGA
1 TCTTATCTCCTTGAGATTACAGTGGA
37738321 ATAGACTGAA
Statistics
Matches: 88, Mismatches: 15, Indels: 19
0.72 0.12 0.16
Matches are distributed among these distances:
40 1 0.01
41 23 0.26
42 5 0.06
43 5 0.06
44 54 0.61
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (41 bp):
TCTTATCTCCTTGAGATTACAGTGGAGCAGATTAAATAAGG
Found at i:37738600 original size:50 final size:50
Alignment explanation
Indices: 37738352--37738601 Score: 193
Period size: 50 Copynumber: 5.0 Consensus size: 50
37738342 CTTATCTCCT
* *
37738352 CAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCC
1 CAGGCGGTGCAGTGGAACAGATTAAAGCCACAACAGCGAATCTTGCTTCC
* * ** * * * *
37738402 CTGACATTGCAGCT--AAAAGATTAAAGCTACAACAGCGAATCTTACTCCC
1 CAGGCGGTGCAG-TGGAACAGATTAAAGCCACAACAGCGAATCTTGCTTCC
* * *
37738451 CTGGCGGTGTAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTCC
1 CAGGCGGTGCAGTGGAACAGATTAAAGCCACAACAGCGAATCTTGCTTCC
* ** * * * ** ** * *
37738501 CTA-ACATTGCAGT-TAATAAGATTAAAGCTACCGCAATGAATTTTACTTCC
1 C-AGGCGGTGCAGTGGAA-CAGATTAAAGCCACAACAGCGAATCTTGCTTCC
* **
37738551 CAGGCGGTGCAGTGGAACAGATTGAAGCCACAATGGCGAATCTTGCTTCC
1 CAGGCGGTGCAGTGGAACAGATTAAAGCCACAACAGCGAATCTTGCTTCC
37738601 C
1 C
37738602 CGACACCACA
Statistics
Matches: 146, Mismatches: 47, Indels: 14
0.71 0.23 0.07
Matches are distributed among these distances:
48 1 0.01
49 40 0.27
50 102 0.70
51 3 0.02
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.24
Consensus pattern (50 bp):
CAGGCGGTGCAGTGGAACAGATTAAAGCCACAACAGCGAATCTTGCTTCC
Found at i:37738627 original size:100 final size:99
Alignment explanation
Indices: 37738342--37738606 Score: 368
Period size: 100 Copynumber: 2.7 Consensus size: 99
37738332 AATTTCAGAC
*
37738342 CTTATCTCCTCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGAC
1 CTTA-CTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGAC
* *
37738407 ATTGCAGCTAAAAGATTAAAGCTACAACAGCGAAT
65 ATTGCAGTTAAAAGATTAAAGCTACAACAACGAAT
* * * *
37738442 CTTACTCCCCTGGCGGTGTAGTGGAACAGATTAAAGCCACAACAGTGAATCTTGCTTCCCTAACA
1 CTTACTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACA
** *
37738507 TTGCAGTTAATAAGATTAAAGCTACCGCAATGAAT
66 TTGCAGTTAA-AAGATTAAAGCTACAACAACGAAT
* * * * * *
37738542 TTTACTTCCCAGGCGGTGCAGTGGAACAGATTGAAGCCACAATGGCGAATCTTGCTTCCCCGACA
1 CTTACTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACA
37738607 CCACAATTAA
Statistics
Matches: 144, Mismatches: 20, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
99 65 0.45
100 79 0.55
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.24
Consensus pattern (99 bp):
CTTACTCCCCAGGCGGTGCAGTGGAACAGATTAAAGCCACAACGGTGAATCTTGCTTCCCTGACA
TTGCAGTTAAAAGATTAAAGCTACAACAACGAAT
Found at i:37741637 original size:28 final size:28
Alignment explanation
Indices: 37741587--37741671 Score: 84
Period size: 28 Copynumber: 3.0 Consensus size: 28
37741577 CACGACAGTT
* *
37741587 AAGAATAGCCCTTATGGCTAACTCT-AGA
1 AAGAATAGCCTTTGTGGCTAACTCTGA-A
*
37741615 ACGAATAGCCTTTGTGG-TGAACTCTGAA
1 AAGAATAGCCTTTGTGGCT-AACTCTGAA
* * *
37741643 AAGAATAGTCTTTGTTGCAAACTCTGAA
1 AAGAATAGCCTTTGTGGCTAACTCTGAA
37741671 A
1 A
37741672 GTTTGTGGCA
Statistics
Matches: 47, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
27 1 0.02
28 45 0.96
29 1 0.02
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (28 bp):
AAGAATAGCCTTTGTGGCTAACTCTGAA
Found at i:37744848 original size:25 final size:27
Alignment explanation
Indices: 37744820--37744870 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
37744810 ATATTATTAA
37744820 TATAATATA-TAA-ATGTTATAATAAG
1 TATAATATATTAATATGTTATAATAAG
37744845 TATAATATATTAATATGTTATAATAA
1 TATAATATATTAATATGTTATAATAA
37744871 ACATTAAAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 9 0.38
26 3 0.12
27 12 0.50
ACGTcount: A:0.51, C:0.00, G:0.06, T:0.43
Consensus pattern (27 bp):
TATAATATATTAATATGTTATAATAAG
Found at i:37745795 original size:43 final size:43
Alignment explanation
Indices: 37745734--37745817 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
37745724 ATTTTCGATA
37745734 TGTGTTTTCGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGACT
1 TGTGTTTTCGTGTAAGACC-CTGTCTGGGACAGTT-GCATCGACT
37745777 TGTGTTTTCGTGTAAGACCCTGTCTGGGACAGTTGCATCGA
1 TGTGTTTTCGTGTAAGACCCTGTCTGGGACAGTTGCATCGA
37745818 TCTATAAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
42 1 0.03
43 35 0.90
44 3 0.08
ACGTcount: A:0.17, C:0.20, G:0.30, T:0.33
Consensus pattern (43 bp):
TGTGTTTTCGTGTAAGACCCTGTCTGGGACAGTTGCATCGACT
Found at i:37752341 original size:81 final size:81
Alignment explanation
Indices: 37752239--37752396 Score: 264
Period size: 81 Copynumber: 2.0 Consensus size: 81
37752229 ATCATATCTT
*
37752239 ATAATAGAGACAGATGTTCAAACCCATACCTTACCAGACATTCCTGACAGTTCATGCCACATAAG
1 ATAATAGAGACAGAAGTTCAAACCCATACCTTACCAGACATTCCTGACAGTTCATGCCACATAAG
37752304 CCTAATAGAGCAGGTC
66 CCTAATAGAGCAGGTC
* * *
37752320 ATAATAGAGACATACAG-TCAAACCCATATCTTACCAGACATTCTTGACAGTTCATGCCACATAA
1 ATAATAGAGACAGA-AGTTCAAACCCATACCTTACCAGACATTCCTGACAGTTCATGCCACATAA
37752384 GCCTAATAGAGCA
65 GCCTAATAGAGCA
37752397 CGCCATAAAA
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
81 71 0.99
82 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.15, T:0.23
Consensus pattern (81 bp):
ATAATAGAGACAGAAGTTCAAACCCATACCTTACCAGACATTCCTGACAGTTCATGCCACATAAG
CCTAATAGAGCAGGTC
Found at i:37752594 original size:27 final size:27
Alignment explanation
Indices: 37752520--37752594 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
37752510 AATACACCAT
* *
37752520 AAAGGCAATCCATACAGAGTATGCCAC
1 AAAGGCAATTCATTCAGAGTATGCCAC
*
37752547 AAAGGCTATAT-ATAT-AGAGTATGCCAC
1 AAAGGCAAT-TCAT-TCAGAGTATGCCAC
*
37752574 AAAGGCAATTCATTCAAAGTA
1 AAAGGCAATTCATTCAGAGTA
37752595 CACCATAAAG
Statistics
Matches: 39, Mismatches: 5, Indels: 8
0.75 0.10 0.15
Matches are distributed among these distances:
26 2 0.05
27 37 0.95
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (27 bp):
AAAGGCAATTCATTCAGAGTATGCCAC
Found at i:37756486 original size:16 final size:16
Alignment explanation
Indices: 37756464--37756517 Score: 58
Period size: 15 Copynumber: 3.4 Consensus size: 16
37756454 TAAATTAGAA
*
37756464 GAAAATTTA-AAAGAT
1 GAAAAATTAGAAAGAT
* *
37756479 GAAAAATTATAAGGAT
1 GAAAAATTAGAAAGAT
37756495 AGAAAAA-TAGAAAGAT
1 -GAAAAATTAGAAAGAT
37756511 GAAAAAT
1 GAAAAAT
37756518 ATAATTTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
15 14 0.44
16 12 0.38
17 6 0.19
ACGTcount: A:0.63, C:0.00, G:0.17, T:0.20
Consensus pattern (16 bp):
GAAAAATTAGAAAGAT
Found at i:37761628 original size:19 final size:19
Alignment explanation
Indices: 37761604--37761642 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
37761594 AGTTTTAGGC
37761604 ACAATGTCTCCTATATGTG
1 ACAATGTCTCCTATATGTG
37761623 ACAATGTCTCCTATATGTG
1 ACAATGTCTCCTATATGTG
37761642 A
1 A
37761643 TTGATCATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (19 bp):
ACAATGTCTCCTATATGTG
Found at i:37762945 original size:37 final size:37
Alignment explanation
Indices: 37762913--37762998 Score: 136
Period size: 37 Copynumber: 2.3 Consensus size: 37
37762903 ATTTAGTTTG
* * *
37762913 GACTGGTCATCTGTTGTTGTTTTAAAGGTTTAGCCTA
1 GACTGGTAACCTGTTGTTGTTTTAAAGATTTAGCCTA
37762950 GACTGGTAACCTGTTGTTGTTTTAAAGATTTAGCCTA
1 GACTGGTAACCTGTTGTTGTTTTAAAGATTTAGCCTA
*
37762987 GACTAGTAACCT
1 GACTGGTAACCT
37762999 TACATGTATG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 45 1.00
ACGTcount: A:0.23, C:0.15, G:0.22, T:0.40
Consensus pattern (37 bp):
GACTGGTAACCTGTTGTTGTTTTAAAGATTTAGCCTA
Found at i:37763174 original size:27 final size:27
Alignment explanation
Indices: 37763144--37763200 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
37763134 AAATGATTGT
* *
37763144 CTTTATGGAAATATATGAAAGGAATGC
1 CTTTATGGAAATATACGAAAGGAATAC
* * *
37763171 CTTTCTGGCATTATACGAAAGGAATAC
1 CTTTATGGAAATATACGAAAGGAATAC
37763198 CTT
1 CTT
37763201 CGTGGCAGAC
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (27 bp):
CTTTATGGAAATATACGAAAGGAATAC
Done.