Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 117 of 163
Found at i:37763239 original size:27 final size:27
Alignment explanation
Indices: 37763188--37763254 Score: 80
Period size: 27 Copynumber: 2.5 Consensus size: 27
37763178 GCATTATACG
* * *
37763188 AAAGGAATACCTTCGTGGCAGACTCTG
1 AAAGGAATGCCTTCGTGGCAAACTCTA
* * *
37763215 AAGGGAATGCCTTTGTGGGAAACTCTA
1 AAAGGAATGCCTTCGTGGCAAACTCTA
37763242 AAAGGAATGCCTT
1 AAAGGAATGCCTT
37763255 GATGGTGTAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (27 bp):
AAAGGAATGCCTTCGTGGCAAACTCTA
Found at i:37779389 original size:41 final size:39
Alignment explanation
Indices: 37779332--37779408 Score: 109
Period size: 41 Copynumber: 1.9 Consensus size: 39
37779322 TTATTAAGAA
*
37779332 TTATAAAAAATTATAAAAATCGTAAAAATATATATAAACTT
1 TTATAAAAAATTATAAAAATCATAAAAA-AT-TATAAACTT
**
37779373 TTATAAAATTTTATAAAAATCATAAAAAATTATAAA
1 TTATAAAAAATTATAAAAATCATAAAAAATTATAAA
37779409 ATGCATCAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 6 0.18
40 2 0.06
41 25 0.76
ACGTcount: A:0.60, C:0.04, G:0.01, T:0.35
Consensus pattern (39 bp):
TTATAAAAAATTATAAAAATCATAAAAAATTATAAACTT
Found at i:37779420 original size:19 final size:19
Alignment explanation
Indices: 37779334--37779409 Score: 71
Period size: 19 Copynumber: 3.8 Consensus size: 19
37779324 ATTAAGAATT
37779334 ATAAAAAATTATAAAAATC
1 ATAAAAAATTATAAAAATC
* ** *
37779353 GTAAAAATATATATAAACTTTT
1 ATAAAAA-AT-TATAAA-AATC
**
37779375 ATAAAATTTTATAAAAATC
1 ATAAAAAATTATAAAAATC
37779394 ATAAAAAATTATAAAA
1 ATAAAAAATTATAAAA
37779410 TGCATCAAAA
Statistics
Matches: 42, Mismatches: 12, Indels: 6
0.70 0.20 0.10
Matches are distributed among these distances:
19 21 0.50
20 8 0.19
21 7 0.17
22 6 0.14
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (19 bp):
ATAAAAAATTATAAAAATC
Found at i:37779604 original size:22 final size:20
Alignment explanation
Indices: 37779579--37779624 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
37779569 AAAATACTTC
37779579 TTTTGGTACGATAATTTTATAA
1 TTTTGGTACG--AATTTTATAA
**
37779601 TTTTTTTACGAATTTTATAA
1 TTTTGGTACGAATTTTATAA
37779621 TTTT
1 TTTT
37779625 TTTACTTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 14 0.64
22 8 0.36
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.59
Consensus pattern (20 bp):
TTTTGGTACGAATTTTATAA
Found at i:37779626 original size:19 final size:20
Alignment explanation
Indices: 37779591--37779658 Score: 95
Period size: 19 Copynumber: 3.5 Consensus size: 20
37779581 TTGGTACGAT
37779591 AATTTTATAATTTTTTTACG
1 AATTTTATAATTTTTTTACG
37779611 AATTTTATAATTTTTTTAC-
1 AATTTTATAATTTTTTTACG
** *
37779630 TTTTTTATAATTTTCTTACG
1 AATTTTATAATTTTTTTACG
37779650 AA-TTTATAA
1 AATTTTATAA
37779659 GATTTTATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
19 23 0.55
20 19 0.45
ACGTcount: A:0.31, C:0.06, G:0.03, T:0.60
Consensus pattern (20 bp):
AATTTTATAATTTTTTTACG
Found at i:37779673 original size:39 final size:39
Alignment explanation
Indices: 37779593--37779674 Score: 112
Period size: 39 Copynumber: 2.1 Consensus size: 39
37779583 GGTACGATAA
* * * *
37779593 TTTTATAATTTTTTTACGAATTTTATAATTTTTTTACTT
1 TTTTATAATTTTCTTACGAATTTTATAAATTTTATAATT
37779632 TTTTATAATTTTCTTACGAA-TTTATAAGATTTTATAATT
1 TTTTATAATTTTCTTACGAATTTTATAA-ATTTTATAATT
37779671 TTTT
1 TTTT
37779675 CTATNNNNNN
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
38 7 0.18
39 31 0.82
ACGTcount: A:0.28, C:0.05, G:0.04, T:0.63
Consensus pattern (39 bp):
TTTTATAATTTTCTTACGAATTTTATAAATTTTATAATT
Found at i:37779881 original size:29 final size:28
Alignment explanation
Indices: 37779843--37779917 Score: 91
Period size: 29 Copynumber: 2.7 Consensus size: 28
37779833 NNNNNNTTTA
*
37779843 TAAT-TTTTTTATATTTTTAATAAATTT
1 TAATATTTTTTATATTTTTAATAAAATT
*
37779870 TAAGTATTTTTTATATTTTTATTAAAATT
1 TAA-TATTTTTTATATTTTTAATAAAATT
**
37779899 TAATAAATTTTAT-TTTTTA
1 TAATATTTTTTATATTTTTA
37779918 TCATTTTTTC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
27 9 0.21
28 9 0.21
29 24 0.57
ACGTcount: A:0.35, C:0.00, G:0.01, T:0.64
Consensus pattern (28 bp):
TAATATTTTTTATATTTTTAATAAAATT
Found at i:37783277 original size:147 final size:147
Alignment explanation
Indices: 37783010--37783298 Score: 533
Period size: 147 Copynumber: 2.0 Consensus size: 147
37783000 TACGAACTTA
* *
37783010 ATTTATGGAGATGACATCCCAAAACAGCAATTTCAGATGTCACTGGAAATCAAAACGTTACAAAG
1 ATTTATGGAGATGACATCCCAAAACAGCAATTTCAGATATCACTAGAAATCAAAACGTTACAAAG
*
37783075 AACCTTCACCCTCACAATTTGACTGAACCCAACCATCCACCCGATTATATATATGTACTCTCATA
66 AACCTTCACCCTCACAATTTGACTGAACCCAACCATCCACCCCATTATATATATGTACTCTCATA
37783140 AATCAAATTGGAATTTG
131 AATCAAATTGGAATTTG
* *
37783157 ATTTATGGAGATGACATCCCAAAACAGCAATTTCAGATATCACTAGAAATCGAAACGTTACAAAT
1 ATTTATGGAGATGACATCCCAAAACAGCAATTTCAGATATCACTAGAAATCAAAACGTTACAAAG
37783222 AACCTTCACCCTCACAATTTGACTGAACCCAACCATCCACCCCATTATATATATGTACTCTCATA
66 AACCTTCACCCTCACAATTTGACTGAACCCAACCATCCACCCCATTATATATATGTACTCTCATA
37783287 AATCAAATTGGA
131 AATCAAATTGGA
37783299 TTTTTTTTTC
Statistics
Matches: 137, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
147 137 1.00
ACGTcount: A:0.38, C:0.25, G:0.11, T:0.26
Consensus pattern (147 bp):
ATTTATGGAGATGACATCCCAAAACAGCAATTTCAGATATCACTAGAAATCAAAACGTTACAAAG
AACCTTCACCCTCACAATTTGACTGAACCCAACCATCCACCCCATTATATATATGTACTCTCATA
AATCAAATTGGAATTTG
Found at i:37784333 original size:22 final size:22
Alignment explanation
Indices: 37784286--37784333 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
37784276 TTTTTTTTTG
* *
37784286 TTGTTGTTGTTTTGTTACCATT
1 TTGTTGTTGTTTTGATACCATA
*
37784308 TTGTTGTTGTTTTGATATCATA
1 TTGTTGTTGTTTTGATACCATA
37784330 TTGT
1 TTGT
37784334 ACTATTTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.12, C:0.06, G:0.19, T:0.62
Consensus pattern (22 bp):
TTGTTGTTGTTTTGATACCATA
Found at i:37799751 original size:13 final size:13
Alignment explanation
Indices: 37799733--37799762 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
37799723 TAATTTCACC
*
37799733 TATGATGTACTTT
1 TATGATGTACCTT
37799746 TATGATGTACCTT
1 TATGATGTACCTT
37799759 TATG
1 TATG
37799763 GCCTAAGCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (13 bp):
TATGATGTACCTT
Found at i:37815437 original size:18 final size:18
Alignment explanation
Indices: 37815414--37815451 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
37815404 TAGCTTGTGT
37815414 AATAGATCAAGTGATCTA
1 AATAGATCAAGTGATCTA
*
37815432 AATAGATTAAGTGATCTA
1 AATAGATCAAGTGATCTA
37815450 AA
1 AA
37815452 ATTGACATGG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.47, C:0.08, G:0.16, T:0.29
Consensus pattern (18 bp):
AATAGATCAAGTGATCTA
Found at i:37824072 original size:11 final size:11
Alignment explanation
Indices: 37824058--37824101 Score: 52
Period size: 11 Copynumber: 3.8 Consensus size: 11
37824048 AGATAAATAT
37824058 TATTTTATTAA
1 TATTTTATTAA
*
37824069 TATTTTAATGAGA
1 TATTTT-ATTA-A
*
37824082 TATTTTATTAT
1 TATTTTATTAA
37824093 TATTTTATT
1 TATTTTATT
37824102 TAGTATATAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 15 0.54
12 6 0.21
13 7 0.25
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:37824550 original size:39 final size:39
Alignment explanation
Indices: 37824506--37824580 Score: 141
Period size: 39 Copynumber: 1.9 Consensus size: 39
37824496 AGAGGAAGAT
*
37824506 ATGGAAATATTGTAGAGAAAGGAAATGAGGGTGTTAGTG
1 ATGGAAATATTATAGAGAAAGGAAATGAGGGTGTTAGTG
37824545 ATGGAAATATTATAGAGAAAGGAAATGAGGGTGTTA
1 ATGGAAATATTATAGAGAAAGGAAATGAGGGTGTTA
37824581 TAAACTTGGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.41, C:0.00, G:0.33, T:0.25
Consensus pattern (39 bp):
ATGGAAATATTATAGAGAAAGGAAATGAGGGTGTTAGTG
Found at i:37825620 original size:44 final size:44
Alignment explanation
Indices: 37825567--37826198 Score: 532
Period size: 44 Copynumber: 14.7 Consensus size: 44
37825557 CACAAAGCTT
* *
37825567 TATCTCCCTGTTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCT
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
37825611 TACCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
37825655 TATCTCTCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* *
37825699 TATCCCCCTGGCCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
37825743 TATCTCCCTGGTCAGTAGTGGAATA----G--G--TG-AA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
* * *
37825777 TATCTCCCTGATCAGCAGTGGAATAGGTTGAAGATTGTGAGTCA
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
*
37825821 TATCCCCCTGG-C--CA--GGAATAGGTTG-AGATTGTAAGTCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
37825859 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
*
37825903 TATCTCCCTGGTCAGCAGTGGAATAGGTTAAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
37825947 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAA-AAT-TACAGATCT
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTA-AG-TCC
* * * ** * * ** *
37825991 TATCTCCCTAAG-CAGTACTGGAGCAGATCGAAGACGGTGAA-TCT
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * * * ** * ****
37826035 TATCTTCCCAAGGT-AGTA-AGGAAGCAAATTTAAGCCACT-AG-CC
1 TATC-TCCC-TGGTCAGCAGTGGAA-TAGGTTGAAGATTGTAAGTCC
* * *
37826078 TTATCTCACTGGTCAACAGTGGAATAAGTTGAAGATTGTAAGTCC
1 -TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
37826123 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCC
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCC
* * *
37826167 TATCTCCCTAAG-CAACAGTGGAGTAGGTTGAA
1 TATCTCCCT-GGTCAGCAGTGGAATAGGTTGAA
37826199 AATTACAGAT
Statistics
Matches: 483, Mismatches: 66, Indels: 78
0.77 0.11 0.12
Matches are distributed among these distances:
34 26 0.05
35 2 0.00
36 2 0.00
38 23 0.05
39 12 0.02
40 2 0.00
41 5 0.01
42 7 0.01
43 31 0.06
44 341 0.71
45 29 0.06
46 2 0.00
47 1 0.00
ACGTcount: A:0.27, C:0.19, G:0.26, T:0.28
Consensus pattern (44 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC
Found at i:37825783 original size:34 final size:34
Alignment explanation
Indices: 37825740--37825804 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
37825730 AGATTGTAAG
* *
37825740 TCCTATCTCCCTGGTCAGTAGTGGAATAGGTGAA
1 TCCTATCTCCCTGATCAGCAGTGGAATAGGTGAA
37825774 TCCTATCTCCCTGATCAGCAGTGGAATAGGT
1 TCCTATCTCCCTGATCAGCAGTGGAATAGGT
37825805 TGAAGATTGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (34 bp):
TCCTATCTCCCTGATCAGCAGTGGAATAGGTGAA
Found at i:37826244 original size:88 final size:88
Alignment explanation
Indices: 37826152--37826420 Score: 219
Period size: 88 Copynumber: 3.1 Consensus size: 88
37826142 GGAATAGGTT
* * *
37826152 GAAGATTGTGAATCCTATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGATCTTATCTC
1 GAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAAGTTACAGATCTTATCTC
*
37826217 CCTAAGCAGTACTGGAGCAGATC
66 CCTAAGCAGTAGTGGAGCAGATC
** * * * * * ** *
37826240 GAAGACGGTGAATCTTATCTTCCC-AAGGTAGTAG-GGAAGAAGATT-TAAGCCACTAG-CCTTA
1 GAAGATTGTGAATCCTATC-TCCCTAA-GCAGCAGTGG-AGAAGGTTGAAAGTTAC-AGATCTTA
* * * * *
37826301 TCTCCCTGAGCAGCAGTGGAGTAGGTT
62 TCTCCCTAAGCAGTAGTGGAGCAGATC
* *
37826328 GAAGATTGT-AGA-CCTTATTTCCCTGAGCAGCAGTGGAGGAA-GTTGAAAGTTACAGATCTTAT
1 GAAGATTGTGA-ATCC-TATCTCCCTAAGCAGCAGTGGA-GAAGGTTGAAAGTTACAGATCTTAT
**
37826390 CTCCCTAAGTGGTAGTGGAGCAGATC
63 CTCCCTAAGCAGTAGTGGAGCAGATC
37826416 GAAGA
1 GAAGA
37826421 CGGCGGATTA
Statistics
Matches: 132, Mismatches: 38, Indels: 22
0.69 0.20 0.11
Matches are distributed among these distances:
87 16 0.12
88 100 0.76
89 16 0.12
ACGTcount: A:0.30, C:0.19, G:0.26, T:0.26
Consensus pattern (88 bp):
GAAGATTGTGAATCCTATCTCCCTAAGCAGCAGTGGAGAAGGTTGAAAGTTACAGATCTTATCTC
CCTAAGCAGTAGTGGAGCAGATC
Found at i:37826248 original size:220 final size:220
Alignment explanation
Indices: 37825859--37826364 Score: 842
Period size: 220 Copynumber: 2.3 Consensus size: 220
37825849 TTGTAAGTCC
37825859 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTGAA-TCCTATCTCCCTGGTCAGCAGTG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGT-AAGTCCTATCTCCCTGGTCAGCAGTG
* *
37825923 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGA
65 GAATAGGTTAAAGATTGTGAATCCTATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGA
37825988 TCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTA
130 TCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTA
37826053 AGGAAGCAA-ATTTAAGCCACTAGCCT
195 AGGAAG-AAGATTTAAGCCACTAGCCT
* * *
37826079 TATCTCACTGGTCAACAGTGGAATAAGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
1 TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
*
37826144 AATAGGTTGAAGATTGTGAATCCTATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGAT
66 AATAGGTTAAAGATTGTGAATCCTATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGAT
*
37826209 CTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAG
131 CTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAA
37826274 GGAAGAAGATTTAAGCCACTAGCCT
196 GGAAGAAGATTTAAGCCACTAGCCT
* * *
37826299 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGT-AGACCTTATTTCCCTGAG-CAGCAG
1 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCC-TATCTCCCTG-GTCAGCAG
37826361 TGGA
63 TGGA
37826365 GGAAGTTGAA
Statistics
Matches: 268, Mismatches: 13, Indels: 10
0.92 0.04 0.03
Matches are distributed among these distances:
219 8 0.03
220 258 0.96
221 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.27
Consensus pattern (220 bp):
TATCTCCCTGGTCAGCAGTGGAATAGGTTGAAGATTGTAAGTCCTATCTCCCTGGTCAGCAGTGG
AATAGGTTAAAGATTGTGAATCCTATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGAT
CTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAA
GGAAGAAGATTTAAGCCACTAGCCT
Found at i:37826344 original size:44 final size:44
Alignment explanation
Indices: 37825777--37826374 Score: 199
Period size: 44 Copynumber: 13.7 Consensus size: 44
37825767 AGGTGAATCC
* * * *
37825777 TATCTCCCTGATCAGCAGTGGAATAGGTTGAAGATTGT-GAGTCA
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGA-CCT
* * *
37825821 TATCCCCCTG-GC--CA--GGAATAGGTTG-AGATTGTAAGTCC-
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGT-AGACCT
*
37825859 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-GAATCC-
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGTAG-A-CCT
* *
37825903 TATCTCCCTG-GTCAGCAGTGGAATAGGTTAAAGATTGT-GAATCC-
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGTAG-A-CCT
* ** *
37825947 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCT
* * * * * * ** *
37825991 TATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGT-GAATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG-ACCT
* * * ** * ****
37826035 TATCTTCCC-AAG--GTAGTAAGGAAGCAAATTTAAGCCACTAG-CCT
1 TATC-TCCCTGAGCAGCAGT--GG-AGTAGGTTGAAGATTGTAGACCT
* * * * *
37826079 TATCTCACTG-GTCAACAGTGGAATAAGTTGAAGATTGTAAGTCC-
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGT-AGACCT
*
37826123 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATTGT-GAATCC-
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAGATTGTAG-A-CCT
* * * ** *
37826167 TATCTCCCTAAGCAACAGTGGAGTAGGTTGAAAATTACAGATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCT
* * * * * * ** *
37826211 TATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGT-GAATCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAG-ACCT
* * * * * * ****
37826255 TATCTTCCC-AAGGTAGTAG-GGAAGAAGATTTAAGCCACTAG-CCT
1 TATC-TCCCTGA-GCAGCAGTGG-AGTAGGTTGAAGATTGTAGACCT
37826299 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCT
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCT
* * *
37826343 TATTTCCCTGAGCAGCAGTGGAGGAAGTTGAA
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAA
37826375 AGTTACAGAT
Statistics
Matches: 428, Mismatches: 88, Indels: 76
0.72 0.15 0.13
Matches are distributed among these distances:
38 17 0.04
39 13 0.03
40 1 0.00
41 4 0.01
42 6 0.01
43 50 0.12
44 291 0.68
45 41 0.10
46 5 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (44 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCT
Found at i:37826389 original size:44 final size:44
Alignment explanation
Indices: 37826296--37826395 Score: 130
Period size: 44 Copynumber: 2.3 Consensus size: 44
37826286 AAGCCACTAG
* * **
37826296 CCTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGA
1 CCTTATCTCCCTGAGCAGCAGTGGAGGAAGTTGAAGATTACAGA
*
37826340 CCTTATTTCCCTGAGCAGCAGTGGAGGAAGTTGAA-AGTTACAGA
1 CCTTATCTCCCTGAGCAGCAGTGGAGGAAGTTGAAGA-TTACAGA
*
37826384 TCTTATCTCCCT
1 CCTTATCTCCCT
37826396 AAGTGGTAGT
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
43 1 0.02
44 47 0.98
ACGTcount: A:0.25, C:0.21, G:0.25, T:0.29
Consensus pattern (44 bp):
CCTTATCTCCCTGAGCAGCAGTGGAGGAAGTTGAAGATTACAGA
Found at i:37826477 original size:88 final size:86
Alignment explanation
Indices: 37826209--37826497 Score: 260
Period size: 88 Copynumber: 3.3 Consensus size: 86
37826199 AATTACAGAT
* *
37826209 CTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTGAATCTTATCTTCCCAAGGTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGGAT-TTATCTTCCCAA-GTAGTAG
37826274 GGAAGAAGATTTAAGCCACTAGC
64 GGAAGAAGATTTAAGCCACTAGC
* * * * * ** * * * * *
37826297 CTTATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTAT-TTCCCTGAGCAGCAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGGA-TTTATCTTCCC-AAGTAGTAG
* * ** *
37826361 TGGAGGAAG-TTGAAAGTTAC-AGAT
64 -GGAAGAAGATT-TAAGCCACTAG-C
** *
37826385 CTTATCTCCCTAAGTGGTAGTGGAGCAGATCGAAGACGGCGGATTATATCTTCCCAAGTTAGTAG
1 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGGATT-TATCTTCCCAAG-TAGTAG
*
37826450 GGAAGCAGATTTAAGCCACTAGC
64 GGAAGAAGATTTAAGCCACTAGC
*
37826473 CTTATCTCCCTGAGCAGTAGTGGAG
1 CTTATCTCCCTAAGCAGTAGTGGAG
37826498 TAGGTTGAAA
Statistics
Matches: 148, Mismatches: 43, Indels: 20
0.70 0.20 0.09
Matches are distributed among these distances:
87 15 0.10
88 120 0.81
89 13 0.09
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (86 bp):
CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGGATTTATCTTCCCAAGTAGTAGGG
AAGAAGATTTAAGCCACTAGC
Found at i:37826539 original size:44 final size:45
Alignment explanation
Indices: 37826473--37826634 Score: 143
Period size: 44 Copynumber: 3.7 Consensus size: 45
37826463 AGCCACTAGC
** * * * *
37826473 CTTATCTCCCTG-AGCAGTAGTGGAGTAGGTTGAAAATTACAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAGAT
* *** **
37826517 TTTATCTCCCT-AAGTTGCAGTGGAGCAGATTGAAGCCAGTA-AT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAGAT
* *
37826560 CCTATCTCCCTGAAGTTGCAGTGGAGCAGATT-AAAATAATAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAGAT
* * *
37826604 CTTATCTCTCTGAAGTTGCAGTAGAGTAGAT
1 CTTATCTCCCTGAAGTTGCAGTGGAGCAGAT
37826635 CGTATCGGGT
Statistics
Matches: 93, Mismatches: 22, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
43 16 0.17
44 77 0.83
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (45 bp):
CTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAAATAACAGAT
Found at i:37826539 original size:176 final size:176
Alignment explanation
Indices: 37826123--37826541 Score: 549
Period size: 176 Copynumber: 2.4 Consensus size: 176
37826113 TTGTAAGTCC
* * ** *
37826123 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT-GTGAATCC-TATCTCCCTAAGCAACAG
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAG-A-CCTTATCTCCCTAAGCAGCAG
* * *
37826185 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTG
63 TGGAGGAAGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGCG
37826250 AATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
128 AATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* ** * *
37826299 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATTTCCCTGAGCAGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
* ** * *
37826364 AGGAAGTTGAAAGTTACAGATCTTATCTCCCTAAGTGGTAGTGGAGCAGATCGAAGACGGCGGAT
66 AGGAAGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGCGAAT
* *
37826429 -TATATCTTCCCAAGTTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
131 CT-TATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* ** **
37826475 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATTTTATCTCCCTAAGTTGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
37826540 AG
66 AG
37826542 CAGATTGAAG
Statistics
Matches: 213, Mismatches: 26, Indels: 8
0.86 0.11 0.03
Matches are distributed among these distances:
175 3 0.01
176 208 0.98
177 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.26, T:0.27
Consensus pattern (176 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
AGGAAGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGCGAAT
CTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:37826571 original size:87 final size:88
Alignment explanation
Indices: 37826453--37826634 Score: 199
Period size: 87 Copynumber: 2.1 Consensus size: 88
37826443 TTAGTAGGGA
* * * * *
37826453 AGCAGATTTAAGCCACTAGCCTTATCTCCCTG-AGCAGTAGTGGAGTAGGTTGAAAATTACAGAT
1 AGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGCAGCAGTGGAGCAGATT-AAAATAACAGAT
* *
37826517 TTTATCTCCCT-AAGTTGCAGTGG
65 CTTATCTCCCTGAAGTTGCAGTAG
* * ** *
37826540 AGCAGATTGAAGCCAGTAATCC-TATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAATAATAGAT
1 AGCAGATTGAAGCCACT-AGCCTTATCTCCCTGAAGCAGCAGTGGAGCAGATTAAAATAACAGAT
*
37826604 CTTATCTCTCTGAAGTTGCAGTAG
65 CTTATCTCCCTGAAGTTGCAGTAG
*
37826628 AGTAGAT
1 AGCAGAT
37826635 CGTATCGGGT
Statistics
Matches: 78, Mismatches: 14, Indels: 5
0.80 0.14 0.05
Matches are distributed among these distances:
87 44 0.56
88 34 0.44
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (88 bp):
AGCAGATTGAAGCCACTAGCCTTATCTCCCTGAAGCAGCAGTGGAGCAGATTAAAATAACAGATC
TTATCTCCCTGAAGTTGCAGTAG
Found at i:37826585 original size:176 final size:175
Alignment explanation
Indices: 37826123--37826590 Score: 509
Period size: 176 Copynumber: 2.7 Consensus size: 175
37826113 TTGTAAGTCC
* * ** *
37826123 TATCTCCCTG-GTCAGCAGTGGAATAGGTTGAAGATT-GTGAATCC-TATCTCCCTAAGCAACAG
1 TATCTCCCTGAG-CAGCAGTGGAGTAGGTTGAAAATTACAG-A-CCTTATCTCCCTAAGCAGCAG
* * * * ** * * *
37826185 TGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAGTACTGGAGCAGATCGAAGACGGTG
63 TGGAGCAAGTTG-AAAGTACAGATCCTATCTCCCTAAGTGGCAGTGGAGCAGATCGAAGACGGCG
37826250 AATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
127 AATCTTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* ** * *
37826299 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAGATTGTAGACCTTATTTCCCTGAGCAGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
* * * *
37826364 AGGAAGTTGAAAGTTACAGATCTTATCTCCCTAAGTGGTAGTGGAGCAGATCGAAGACGGCGGAT
66 AGCAAGTTGAAAG-TACAGATCCTATCTCCCTAAGTGGCAGTGGAGCAGATCGAAGACGGCGAAT
* *
37826429 -TATATCTTCCCAAGTTAGTAGGGAAGCAGATTTAAGCCACTAGCCT
130 CT-TATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
* ** **
37826475 TATCTCCCTGAGCAGTAGTGGAGTAGGTTGAAAATTACAGATTTTATCTCCCTAAGTTGCAGTGG
1 TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
* *
37826540 AGC-AGATTG-AAG-CCAGTAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGAT
66 AGCAAG-TTGAAAGTACAG--ATCCTATCTCCCT-AAGTGGCAGTGGAGCAGAT
37826591 TAAAATAATA
Statistics
Matches: 252, Mismatches: 31, Indels: 18
0.84 0.10 0.06
Matches are distributed among these distances:
173 3 0.01
175 23 0.09
176 224 0.89
177 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (175 bp):
TATCTCCCTGAGCAGCAGTGGAGTAGGTTGAAAATTACAGACCTTATCTCCCTAAGCAGCAGTGG
AGCAAGTTGAAAGTACAGATCCTATCTCCCTAAGTGGCAGTGGAGCAGATCGAAGACGGCGAATC
TTATCTTCCCAAGGTAGTAGGGAAGAAGATTTAAGCCACTAGCCT
Found at i:37827211 original size:21 final size:21
Alignment explanation
Indices: 37827186--37827250 Score: 130
Period size: 21 Copynumber: 3.1 Consensus size: 21
37827176 ATCTTCAAGG
37827186 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
37827207 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
37827228 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
37827249 AT
1 AT
37827251 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.38
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:37829939 original size:49 final size:48
Alignment explanation
Indices: 37829815--37829959 Score: 173
Period size: 49 Copynumber: 3.0 Consensus size: 48
37829805 GTGGCATGAA
** * *
37829815 ACTTGAACCTGTGACTGCATAACCACCGCCAACTGGAGGCCCGAGTTAT
1 ACTTGAACCCATGACTGCATAACCACTGTCAACTGGA-GCCCGAGTTAT
* *
37829864 ACTTGAACCCATGATTGCATAACCACTGTCAACTAGGAGCCCTAGTTAT
1 ACTTGAACCCATGACTGCATAACCACTGTCAACT-GGAGCCCGAGTTAT
** * *
37829913 ACTTGAACCCATGACTATATAACCACTGTGAACTGGGAGCTCGAGTT
1 ACTTGAACCCATGACTGCATAACCACTGTCAACT-GGAGCCCGAGTT
37829960 GCAATGTAAC
Statistics
Matches: 82, Mismatches: 13, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
49 79 0.96
50 3 0.04
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (48 bp):
ACTTGAACCCATGACTGCATAACCACTGTCAACTGGAGCCCGAGTTAT
Found at i:37830447 original size:28 final size:28
Alignment explanation
Indices: 37830393--37830447 Score: 65
Period size: 28 Copynumber: 2.0 Consensus size: 28
37830383 TGTTCACTTC
* ***
37830393 TCCCAGATTGGTACTTATGGTTCTTTTG
1 TCCCAGATTGGTACTCAAACTTCTTTTG
*
37830421 TCCCAGATTGGTACTCAAACTTTTTTT
1 TCCCAGATTGGTACTCAAACTTCTTTT
37830448 CTGTCCAATA
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.18, C:0.20, G:0.16, T:0.45
Consensus pattern (28 bp):
TCCCAGATTGGTACTCAAACTTCTTTTG
Found at i:37831315 original size:34 final size:35
Alignment explanation
Indices: 37831271--37831337 Score: 91
Period size: 34 Copynumber: 1.9 Consensus size: 35
37831261 CAGTAAAATA
*
37831271 TTTTCCGTAAAATAATTT-CGGGAAAATGTTTTAC
1 TTTTCCGTAAAATAATTTACGGGAAAATATTTTAC
* * *
37831305 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATAATTTACGGGAAAATATTTT
37831338 CTGGTGTTTG
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
34 16 0.57
35 12 0.43
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.45
Consensus pattern (35 bp):
TTTTCCGTAAAATAATTTACGGGAAAATATTTTAC
Found at i:37833166 original size:23 final size:24
Alignment explanation
Indices: 37833140--37833187 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 24
37833130 AAAAGAAAGT
37833140 TTAAAGAACATAAAA-GAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
** *
37833163 TTAAATTACTTAAAACGAAAAAAA
1 TTAAAGAACATAAAACGAAAAAAA
37833187 T
1 T
37833188 ATGAGGATCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 12 0.57
24 9 0.43
ACGTcount: A:0.67, C:0.06, G:0.06, T:0.21
Consensus pattern (24 bp):
TTAAAGAACATAAAACGAAAAAAA
Found at i:37842334 original size:2 final size:2
Alignment explanation
Indices: 37842329--37842380 Score: 104
Period size: 2 Copynumber: 26.0 Consensus size: 2
37842319 AAAAAGTTCA
37842329 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37842371 AT AT AT AT AT
1 AT AT AT AT AT
37842381 TCACTAAAAT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:37842587 original size:11 final size:11
Alignment explanation
Indices: 37842573--37842615 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
37842563 TTTTGCTGCT
37842573 ATTTTGCTATC
1 ATTTTGCTATC
* * *
37842584 ATTTTACTGTT
1 ATTTTGCTATC
*
37842595 GTTTTGCTATC
1 ATTTTGCTATC
37842606 ATTTTGCTAT
1 ATTTTGCTAT
37842616 TATATTATTA
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.16, C:0.14, G:0.12, T:0.58
Consensus pattern (11 bp):
ATTTTGCTATC
Found at i:37849540 original size:76 final size:77
Alignment explanation
Indices: 37849428--37849580 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 77
37849418 TATTTTATCA
37849428 ATTAATGTACAAATAAATTTTTTTAATAAATTGGATAAAATTTTATATATAATTAATTTAATTTG
1 ATTAATGTACAAATAAATTTTTTTAATAAATTGGATAAAATTTTATATATAATTAATTTAATTTG
37849493 ATTTTACTTACT
66 ATTTTACTTACT
37849505 ATTAATGTAC-AATAAATTTTTTTAATAAATTGGATAAAATTTTATATATAATTAATTTAATTTG
1 ATTAATGTACAAATAAATTTTTTTAATAAATTGGATAAAATTTTATATATAATTAATTTAATTTG
37849569 ATTTTACTTACT
66 ATTTTACTTACT
37849581 CCATTGGAAT
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
76 66 0.87
77 10 0.13
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (77 bp):
ATTAATGTACAAATAAATTTTTTTAATAAATTGGATAAAATTTTATATATAATTAATTTAATTTG
ATTTTACTTACT
Found at i:37853608 original size:7 final size:7
Alignment explanation
Indices: 37853584--37853629 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
37853574 GATCATAGAT
37853584 CTTAAAC
1 CTTAAAC
* *
37853591 TTTAAAT
1 CTTAAAC
*
37853598 CTTGAAC
1 CTTAAAC
*
37853605 CTTGAAC
1 CTTAAAC
37853612 CTTAAAC
1 CTTAAAC
37853619 CTTAAAC
1 CTTAAAC
37853626 CTTA
1 CTTA
37853630 TACTTTGGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.37, C:0.24, G:0.04, T:0.35
Consensus pattern (7 bp):
CTTAAAC
Found at i:37853724 original size:7 final size:7
Alignment explanation
Indices: 37853686--37853736 Score: 52
Period size: 7 Copynumber: 7.4 Consensus size: 7
37853676 CTAGGCCATG
37853686 GACCTT-
1 GACCTTA
*
37853692 GACTTTA
1 GACCTTA
*
37853699 GACCCTA
1 GACCTTA
*
37853706 AACCTTTA
1 GACC-TTA
37853714 -ACCTTA
1 GACCTTA
37853720 GACCTTA
1 GACCTTA
37853727 GACCTTA
1 GACCTTA
37853734 GAC
1 GAC
37853737 TCAGGACCTT
Statistics
Matches: 37, Mismatches: 5, Indels: 5
0.79 0.11 0.11
Matches are distributed among these distances:
6 8 0.22
7 27 0.73
8 2 0.05
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (7 bp):
GACCTTA
Found at i:37853836 original size:29 final size:29
Alignment explanation
Indices: 37853790--37853846 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
37853780 CTGGGTCCAT
* *
37853790 GGTTCAAGGTTTAGGATTCAAGATTTTAA
1 GGTTCAAGGTCTAAGATTCAAGATTTTAA
*
37853819 GGTTTAAGGTCTAAGATTCAAGATTTTA
1 GGTTCAAGGTCTAAGATTCAAGATTTTA
37853847 GAGTCCAAGG
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.07, G:0.23, T:0.39
Consensus pattern (29 bp):
GGTTCAAGGTCTAAGATTCAAGATTTTAA
Found at i:37853856 original size:29 final size:28
Alignment explanation
Indices: 37853794--37853865 Score: 74
Period size: 29 Copynumber: 2.5 Consensus size: 28
37853784 GTCCATGGTT
* *
37853794 CAAGGTTTAGGATTCAAGATTTTAAGGTT
1 CAAGG-TTAAGATTCAAGATTTTAAGGTC
*
37853823 TAAGGTCTAAGATTCAAGATTTT-AGAGTC
1 CAAGGT-TAAGATTCAAGATTTTAAG-GTC
*
37853852 CAAGGTTTAGATTC
1 CAAGGTTAAGATTC
37853866 TAGGGTCCAA
Statistics
Matches: 36, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
28 10 0.28
29 26 0.72
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (28 bp):
CAAGGTTAAGATTCAAGATTTTAAGGTC
Found at i:37853863 original size:21 final size:21
Alignment explanation
Indices: 37853839--37853879 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
37853829 CTAAGATTCA
*
37853839 AGATTTTAGAGTCCAAGGTTT
1 AGATTCTAGAGTCCAAGGTTT
*
37853860 AGATTCTAGGGTCCAAGGTT
1 AGATTCTAGAGTCCAAGGTT
37853880 CAAGGTATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.34
Consensus pattern (21 bp):
AGATTCTAGAGTCCAAGGTTT
Found at i:37858892 original size:32 final size:32
Alignment explanation
Indices: 37858856--37858920 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
37858846 CTCTTTGCAA
37858856 TTTAGTCCTTAGATTAGCATATTTAATTTTCC
1 TTTAGTCCTTAGATTAGCATATTTAATTTTCC
37858888 TTTAGTCCTTAGATTAGCATATTTAATTTTCC
1 TTTAGTCCTTAGATTAGCATATTTAATTTTCC
37858920 T
1 T
37858921 ATCATATTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.25, C:0.15, G:0.09, T:0.51
Consensus pattern (32 bp):
TTTAGTCCTTAGATTAGCATATTTAATTTTCC
Found at i:37864941 original size:13 final size:13
Alignment explanation
Indices: 37864923--37864948 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
37864913 CTAGTTTCCG
37864923 TTGTTTCATTTTT
1 TTGTTTCATTTTT
37864936 TTGTTTCATTTTT
1 TTGTTTCATTTTT
37864949 ATTTATTTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.77
Consensus pattern (13 bp):
TTGTTTCATTTTT
Found at i:37865158 original size:21 final size:21
Alignment explanation
Indices: 37865133--37865182 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
37865123 TACTCTTTTT
37865133 TTATTTCATTCATTA-TT-ATTA
1 TTATTT-A-TCATTATTTAATTA
37865154 TTATTTATCATTATTTAATTA
1 TTATTTATCATTATTTAATTA
*
37865175 TTACTTAT
1 TTATTTAT
37865183 TCTTCTTCCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
19 6 0.23
20 3 0.12
21 17 0.65
ACGTcount: A:0.30, C:0.08, G:0.00, T:0.62
Consensus pattern (21 bp):
TTATTTATCATTATTTAATTA
Found at i:37875347 original size:20 final size:20
Alignment explanation
Indices: 37875324--37875366 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
37875314 AACTATTTAA
** *
37875324 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
37875344 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
37875364 ATA
1 ATA
37875367 TGCTTCTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:37875850 original size:14 final size:15
Alignment explanation
Indices: 37875831--37875859 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
37875821 TGTGGAAATG
37875831 TGTTTTTTT-TTTTT
1 TGTTTTTTTGTTTTT
37875845 TGTTTTTTTGTTTTT
1 TGTTTTTTTGTTTTT
37875860 ACTGTGTTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.00, C:0.00, G:0.10, T:0.90
Consensus pattern (15 bp):
TGTTTTTTTGTTTTT
Found at i:37876115 original size:22 final size:22
Alignment explanation
Indices: 37876073--37876115 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
37876063 CCCCTTATAG
* *
37876073 CCTTCTCTTTCTCTCTCCATCT
1 CCTTCTCCTTCTCTCTACATCT
37876095 CCTTCTTCCTTCTCT-TACATC
1 CCTTC-TCCTTCTCTCTACATC
37876116 AAGCTATGCT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.07, C:0.44, G:0.00, T:0.49
Consensus pattern (22 bp):
CCTTCTCCTTCTCTCTACATCT
Found at i:37879373 original size:3 final size:3
Alignment explanation
Indices: 37879365--37879399 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
37879355 CTGCAGACTA
* *
37879365 ATT ATT ATT ATT ATT GTT GTT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
37879400 AGAAGAGTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:37885879 original size:108 final size:108
Alignment explanation
Indices: 37885690--37885905 Score: 389
Period size: 108 Copynumber: 2.0 Consensus size: 108
37885680 CATACCTAAG
* *
37885690 CTTACAATTATCATTCCATAACCAAGCATCAATCAAAGCATATCACATAACATATCATTTTCTCT
1 CTTACAATTATCATTCCATAACCAAGCATCAATCAAAGCATATCACACAACATATCATTTTCTCC
37885755 ACCATTAAACATTAAACATATGATCTAAGCTACCTAGCAAAAT
66 ACCATTAAACATTAAACATATGATCTAAGCTACCTAGCAAAAT
*
37885798 CTTACAATTATCATTCCATAACCAAGCAT-AATTCAAAGCATATCACACAACATATCATTTTTTC
1 CTTACAATTATCATTCCATAACCAAGCATCAA-TCAAAGCATATCACACAACATATCATTTTCTC
37885862 CACCATTAAACATTAAACATATGATCTAAGCTACCTAGCAAAAT
65 CACCATTAAACATTAAACATATGATCTAAGCTACCTAGCAAAAT
37885906 AACAACATGG
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
107 2 0.02
108 102 0.98
ACGTcount: A:0.42, C:0.24, G:0.05, T:0.30
Consensus pattern (108 bp):
CTTACAATTATCATTCCATAACCAAGCATCAATCAAAGCATATCACACAACATATCATTTTCTCC
ACCATTAAACATTAAACATATGATCTAAGCTACCTAGCAAAAT
Found at i:37896503 original size:24 final size:24
Alignment explanation
Indices: 37896476--37896522 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
37896466 AATAATTTAA
*
37896476 TAAA-TAAAAATAAAATTCTAAAAC
1 TAAACTAAAAAT-AAAGTCTAAAAC
*
37896500 TAAACTAAAACTAAAGTCTAAAA
1 TAAACTAAAAATAAAGTCTAAAA
37896523 GTCTAAAAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.64, C:0.11, G:0.02, T:0.23
Consensus pattern (24 bp):
TAAACTAAAAATAAAGTCTAAAAC
Found at i:37896586 original size:27 final size:27
Alignment explanation
Indices: 37896554--37896623 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
37896544 GTAGGGATTC
*
37896554 AATTCGGTTAATTCAGGTAATTCGGGT
1 AATTCGGTTAATTCAGGTAATTCGAGT
* *
37896581 AATTCGGTTAATTCGGGTAATTCGATT
1 AATTCGGTTAATTCAGGTAATTCGAGT
*
37896608 AATGCGGTTAATTCAG
1 AATTCGGTTAATTCAG
37896624 TTAACCGACC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.27, C:0.11, G:0.24, T:0.37
Consensus pattern (27 bp):
AATTCGGTTAATTCAGGTAATTCGAGT
Found at i:37896610 original size:9 final size:9
Alignment explanation
Indices: 37896554--37896627 Score: 87
Period size: 9 Copynumber: 8.2 Consensus size: 9
37896544 GTAGGGATTC
37896554 AATTCGGTT
1 AATTCGGTT
37896563 AATTCAGG-T
1 AATTC-GGTT
*
37896572 AATTCGGGT
1 AATTCGGTT
37896581 AATTCGGTT
1 AATTCGGTT
*
37896590 AATTCGGGT
1 AATTCGGTT
*
37896599 AATTCGATT
1 AATTCGGTT
*
37896608 AATGCGGTT
1 AATTCGGTT
*
37896617 AATTCAGTT
1 AATTCGGTT
37896626 AA
1 AA
37896628 CCGACCGAAT
Statistics
Matches: 55, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
8 2 0.04
9 51 0.93
10 2 0.04
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (9 bp):
AATTCGGTT
Found at i:37903914 original size:17 final size:17
Alignment explanation
Indices: 37903892--37903924 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37903882 ATTTTATAAA
37903892 ATAATATTTTAATTAAG
1 ATAATATTTTAATTAAG
*
37903909 ATAATATTTTATTTAA
1 ATAATATTTTAATTAA
37903925 TAAATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
ATAATATTTTAATTAAG
Found at i:37907867 original size:17 final size:17
Alignment explanation
Indices: 37907845--37907877 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
37907835 ATTTTATAAA
37907845 ATAATATTTTAATTAAG
1 ATAATATTTTAATTAAG
*
37907862 ATAATATTTTATTTAA
1 ATAATATTTTAATTAA
37907878 TAAATTATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (17 bp):
ATAATATTTTAATTAAG
Found at i:37910243 original size:24 final size:24
Alignment explanation
Indices: 37910211--37910296 Score: 95
Period size: 24 Copynumber: 3.7 Consensus size: 24
37910201 ATAAAACAGT
* *
37910211 TTGGGCAGCATTTAAGCATCAAAA
1 TTGGACAGCATTTATGCATCAAAA
* *
37910235 TTGGACAGCA-TTATGTAAC-AAA
1 TTGGACAGCATTTATGCATCAAAA
* *
37910257 TTGGGCAGCTTTTATGCATCAAAA
1 TTGGACAGCATTTATGCATCAAAA
*
37910281 TTGGACAGCATATATG
1 TTGGACAGCATTTATG
37910297 TAATAAATTG
Statistics
Matches: 49, Mismatches: 11, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
22 11 0.22
23 13 0.27
24 25 0.51
ACGTcount: A:0.35, C:0.15, G:0.21, T:0.29
Consensus pattern (24 bp):
TTGGACAGCATTTATGCATCAAAA
Found at i:37910263 original size:46 final size:47
Alignment explanation
Indices: 37910188--37910307 Score: 161
Period size: 46 Copynumber: 2.6 Consensus size: 47
37910178 ATTCATGAAT
* ** **
37910188 TTGGTCAGCATATATAAAACAGTTTGGGCAGCATTTAAGCATCAAAA
1 TTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCAAAA
* *
37910235 TTGGACAGCAT-TATGTAACAAATTGGGCAGCTTTTATGCATCAAAA
1 TTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCAAAA
*
37910281 TTGGACAGCATATATGTAATAAATTGG
1 TTGGACAGCATATATGTAACAAATTGG
37910308 TTCAACTCAT
Statistics
Matches: 64, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
46 40 0.62
47 24 0.38
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (47 bp):
TTGGACAGCATATATGTAACAAATTGGGCAGCATTTAAGCATCAAAA
Found at i:37910271 original size:23 final size:22
Alignment explanation
Indices: 37910232--37910307 Score: 71
Period size: 24 Copynumber: 3.3 Consensus size: 22
37910222 TTAAGCATCA
*
37910232 AAATTGGACAGCATTATGTAAC
1 AAATTGGACAGCTTTATGTAAC
* * *
37910254 AAATTGGGCAGCTTTTATGCATC
1 AAATTGGACAGC-TTTATGTAAC
* *
37910277 AAAATTGGACAGCATATATGTAAT
1 -AAATTGGACAGC-TTTATGTAAC
37910301 AAATTGG
1 AAATTGG
37910308 TTCAACTCAT
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
22 11 0.26
23 14 0.33
24 17 0.40
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (22 bp):
AAATTGGACAGCTTTATGTAAC
Found at i:37911218 original size:43 final size:43
Alignment explanation
Indices: 37911131--37911260 Score: 160
Period size: 43 Copynumber: 3.0 Consensus size: 43
37911121 AACTCGTACA
* * *
37911131 ATGCCAACGTCCCAGACGTGGTCGTACATGTAATCACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
37911174 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGTAAACACA-AGTCG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAAACACATA-TCG
*
37911217 ATGCCAACGTCCCAGACGTGGTCTTAGACG-ATAACACATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTA-AACACATATCG
37911260 A
1 A
37911261 AAATCCTATG
Statistics
Matches: 76, Mismatches: 4, Indels: 14
0.81 0.04 0.15
Matches are distributed among these distances:
42 5 0.07
43 67 0.88
44 4 0.05
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAAACACATATCG
Found at i:37919379 original size:21 final size:21
Alignment explanation
Indices: 37919338--37919380 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
37919328 CAAAAGCCTG
* *
37919338 AAAGCTAAACAGAAGCTCATA
1 AAAGCTAAACAGAAACCCATA
*
37919359 AAAGCTAAATAGAAACCCATA
1 AAAGCTAAACAGAAACCCATA
37919380 A
1 A
37919381 GGGTTGAACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.56, C:0.19, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAGCTAAACAGAAACCCATA
Found at i:37919393 original size:21 final size:21
Alignment explanation
Indices: 37919345--37919499 Score: 112
Period size: 21 Copynumber: 7.4 Consensus size: 21
37919335 CTGAAAGCTA
* * * *
37919345 AACAGAAGCTCATAAAAGCTA
1 AACAGAAACTCATAAGAGTTG
* * *
37919366 AATAGAAACCCATAAGGGTTG
1 AACAGAAACTCATAAGAGTTG
* **
37919387 AACAGAAGCTTGTAAGAGTTG
1 AACAGAAACTCATAAGAGTTG
*
37919408 AACAGAAACTCAAAAGAGTTG
1 AACAGAAACTCATAAGAGTTG
* * *
37919429 AAAAGAAGCTCGTAAGAGTTG
1 AACAGAAACTCATAAGAGTTG
* * *
37919450 AACAGAAACTCGTATGAGTTA
1 AACAGAAACTCATAAGAGTTG
* * * * *
37919471 AAAAGAAGCTCGTAAGAGCTA
1 AACAGAAACTCATAAGAGTTG
37919492 AACAGAAA
1 AACAGAAA
37919500 GTAAAACACG
Statistics
Matches: 103, Mismatches: 31, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
21 103 1.00
ACGTcount: A:0.47, C:0.14, G:0.22, T:0.17
Consensus pattern (21 bp):
AACAGAAACTCATAAGAGTTG
Found at i:37919415 original size:42 final size:42
Alignment explanation
Indices: 37919369--37919499 Score: 172
Period size: 42 Copynumber: 3.1 Consensus size: 42
37919359 AAAGCTAAAT
* * * *
37919369 AGAAACCCATAAGGGTTGAACAGAAGCTTGTAAGAGTTGAAC
1 AGAAACTCATAAGAGTTGAAAAGAAGCTCGTAAGAGTTGAAC
*
37919411 AGAAACTCAAAAGAGTTGAAAAGAAGCTCGTAAGAGTTGAAC
1 AGAAACTCATAAGAGTTGAAAAGAAGCTCGTAAGAGTTGAAC
* * * * *
37919453 AGAAACTCGTATGAGTTAAAAAGAAGCTCGTAAGAGCTAAAC
1 AGAAACTCATAAGAGTTGAAAAGAAGCTCGTAAGAGTTGAAC
37919495 AGAAA
1 AGAAA
37919500 GTAAAACACG
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 78 1.00
ACGTcount: A:0.46, C:0.13, G:0.24, T:0.18
Consensus pattern (42 bp):
AGAAACTCATAAGAGTTGAAAAGAAGCTCGTAAGAGTTGAAC
Found at i:37921056 original size:25 final size:25
Alignment explanation
Indices: 37920974--37921056 Score: 69
Period size: 25 Copynumber: 3.3 Consensus size: 25
37920964 CCTTCTCTCA
* **
37920974 AGCCATATAA-TGGAAAGCTCATGTG
1 AGCCATATAACAGG-AAGCTCATAAG
* * **
37920999 AGCCATATAACGGGAAGCTTATCCG
1 AGCCATATAACAGGAAGCTCATAAG
* *
37921024 GGCTATATAACAGGAAGCTCATAAG
1 AGCCATATAACAGGAAGCTCATAAG
37921049 AGCCATAT
1 AGCCATAT
37921057 TTGGGAAGCT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
25 43 0.96
26 2 0.04
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22
Consensus pattern (25 bp):
AGCCATATAACAGGAAGCTCATAAG
Found at i:37921127 original size:72 final size:73
Alignment explanation
Indices: 37921051--37921188 Score: 172
Period size: 72 Copynumber: 1.9 Consensus size: 73
37921041 CTCATAAGAG
* * * *
37921051 CCATAT-TTGGGAAGCTCATGCGAGTCAAAAACGGGTAGCTCCGAAGAGCCATTAA-CGGGAAGC
1 CCATATATCGGGAAGCTCAAGCGAG-CAAAAACGGGAAGCTCCGAAGAGCCATTAATCAGGAAGC
37921114 TCCAGATAT
65 TCCAGATAT
* * * * *
37921123 CCATATATCGGGAAGTTCAAGCGAGCCATATCGGGAAGCTCCGGAGAGCCATTAATCAGGAAGCT
1 CCATATATCGGGAAGCTCAAGCGAGCAAAAACGGGAAGCTCCGAAGAGCCATTAATCAGGAAGCT
37921188 C
66 C
37921189 ACAAAGAGCC
Statistics
Matches: 55, Mismatches: 9, Indels: 3
0.82 0.13 0.04
Matches are distributed among these distances:
72 31 0.56
73 24 0.44
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (73 bp):
CCATATATCGGGAAGCTCAAGCGAGCAAAAACGGGAAGCTCCGAAGAGCCATTAATCAGGAAGCT
CCAGATAT
Found at i:37921187 original size:25 final size:25
Alignment explanation
Indices: 37921082--37921214 Score: 105
Period size: 25 Copynumber: 5.4 Consensus size: 25
37921072 GAGTCAAAAA
*
37921082 CGGGTAGCTCC-GAAGAGCCATTAA-
1 CGGGAAGCTCCAG-AGAGCCATTAAT
* *
37921106 CGGGAAGCTCCAGATATCCA-TATAT
1 CGGGAAGCTCCAGAGAGCCATTA-AT
* * *
37921131 CGGGAAGTTCAAGCGAGCCA-T-AT
1 CGGGAAGCTCCAGAGAGCCATTAAT
*
37921154 CGGGAAGCTCCGGAGAGCCATTAAT
1 CGGGAAGCTCCAGAGAGCCATTAAT
* * *
37921179 CAGGAAGCTCACAAAGAGCCTTTAAT
1 CGGGAAGCTC-CAGAGAGCCATTAAT
*
37921205 CGTGAAGCTC
1 CGGGAAGCTC
37921215 ACAAAGAGTC
Statistics
Matches: 85, Mismatches: 18, Indels: 10
0.75 0.16 0.09
Matches are distributed among these distances:
23 20 0.24
24 17 0.20
25 28 0.33
26 20 0.24
ACGTcount: A:0.31, C:0.24, G:0.26, T:0.19
Consensus pattern (25 bp):
CGGGAAGCTCCAGAGAGCCATTAAT
Found at i:37921203 original size:26 final size:26
Alignment explanation
Indices: 37921167--37921222 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
37921157 GAAGCTCCGG
37921167 AGAGCCATTAATCAG-GAAGCTCACAA
1 AGAGCCATTAATC-GTGAAGCTCACAA
*
37921193 AGAGCCTTTAATCGTGAAGCTCACAA
1 AGAGCCATTAATCGTGAAGCTCACAA
37921219 AGAG
1 AGAG
37921223 TCATATAACG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.39, C:0.21, G:0.21, T:0.18
Consensus pattern (26 bp):
AGAGCCATTAATCGTGAAGCTCACAA
Found at i:37927816 original size:23 final size:23
Alignment explanation
Indices: 37927790--37927846 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
37927780 AATAATATAT
*
37927790 ATATAAATATGAGAAAAAAATAA
1 ATATAAATATAAGAAAAAAATAA
** * *
37927813 ATATGTATATAAGAAAACAATGA
1 ATATAAATATAAGAAAAAAATAA
*
37927836 ATATACATATA
1 ATATAAATATA
37927847 TATATAAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (23 bp):
ATATAAATATAAGAAAAAAATAA
Found at i:37929470 original size:44 final size:43
Alignment explanation
Indices: 37929409--37929538 Score: 147
Period size: 44 Copynumber: 3.0 Consensus size: 43
37929399 ACCCGATGCG
* * *
37929409 ATCTACTCTACTGCAACTTCAGAGAGATAAGATCTGTGAT-TTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGAT-TAT-ATCTTTA
* *
37929453 ATCTGCTCCACTGCAACTTCAGGGAGATAGGATTATATGCTTTA
1 ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATAT-CTTTA
*
37929497 ATCTGCTCCACTACAACTTCA-AGGAGATAAGATTTATATCTT
1 ATCTGCTCCACTGCAACTTCAGA-GAGATAAGA-TTATATCTT
37929539 CGATCTACTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 2 0.03
43 2 0.03
44 64 0.86
45 6 0.08
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (43 bp):
ATCTGCTCCACTGCAACTTCAGAGAGATAAGATTATATCTTTA
Found at i:37929692 original size:88 final size:88
Alignment explanation
Indices: 37929535--37930672 Score: 634
Period size: 88 Copynumber: 13.2 Consensus size: 88
37929525 AAGATTTATA
* * * * * * * *
37929535 TCTTCGATCTACTTCATGCCAATACATGAAGACAATATATGTCATCTTTGATCTACTTCACGCCA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
*
37929600 ATACATGAAGACAAGATCTGCTA
66 ATACATGAAGACAAGATCTGCTT
* * * * * *
37929623 CCTTTGATCTACTTCATGCCGATACATGAAGACAAGATCTTTTACCCTTGATCTACTTCATGCTG
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
* * *
37929688 ATACATGAAGATAAGATCAGTTT
66 ATACATGAAGACAAGATCTGCTT
*
37929711 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTCTACCTTTGATCTACTTCATGCCG
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
37929776 ATACATGAAGACAAGAT-T-CATTT
66 ATACATGAAGACAAGATCTGC--TT
* *
37929799 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATATTCTACCTTTGATCTACTTCATGCCG
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
* * *
37929864 ATACATGAAGACAATATATGTTT
66 ATACATGAAGACAAGATCTGCTT
* * * *
37929887 TCTTCTATCTACTTCACGCCAGTACATGAAGACAAGATCTGTTACCTTTGATCTACTTCACGCCG
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
*
37929952 ATACATAAAGACAAGATCTGCTT
66 ATACATGAAGACAAGATCTGCTT
* * *** *** * ** * * *
37929975 TCTTCGATCTACTTTGC-CACCAGTATGGGAAGACAAGATCTGCAATCTTCAATCCACTTCGTAA
1 TCTTCGATCTAC-TT-CACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCAT-G
* * * * * *
37930039 CCAATATAGGAAGACAGGATTTACTT
63 CCGATACATGAAGACAAGATCTGCTT
* * *
37930065 TCTTCGATATACTTCAAGCCAATACATGAAGACAAGAT-TTGCTT-TCTTTGATCTACTT--TGC
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTT--TTACCTTTGATCTACTTCATGC
* *
37930126 C-ACCAATATGGGAAGACAAGA-------
64 CGA--TACAT--GAAGACAAGATCTGCTT
* * * * * ** * * * * *
37930147 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTAC
1 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTC-ATGC
* * * * *
37930211 CAATCCAGGAAGACAGGATTTGCTT
64 CGATACATGAAGACAAGATCTGCTT
* * ***
37930236 TCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTACTTTA--TTTGATCTAATTCGCCA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT--TTTACCTTTGATCTACTTC-ATG
* ***
37930299 CCAATATGGGAAGACAAGA-------
63 CCGATACATGAAGACAAGATCTGCTT
* * * * * ** * * * *
37930318 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCA
1 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCC
*
37930382 AATACATGAAGACAAGATCTGCTT
65 GATACATGAAGACAAGATCTGCTT
* * * *** * * * *
37930406 TCCTCGATCTACTTCGCCACCAATATGGGAAGACAAAATC--TT--C---GATCCACTTCCTACC
1 TCTTCGATCTACTTC-ACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCC
* * * * *
37930464 AATATAGGAAGACAGGATCTGCTA
65 GATACATGAAGACAAGATCTGCTT
* * ***
37930488 TCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTT-CC-TCGATCTACTTCGCCA
1 TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCT--TTTACCTTTGATCTACTTC-ATG
* ***
37930551 CCAATATGGGAAGACAAGA-------
63 CCGATACATGAAGACAAGATCTGCTT
* * * * * ** * * *
37930570 TCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGCC
1 TCTTCGATCTACTTCAC-GCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCC
*
37930634 AATACATGAAGACAAGATCTGCTT
65 GATACATGAAGACAAGATCTGCTT
37930658 TCTTCGATCTACTTC
1 TCTTCGATCTACTTC
37930673 GCCACCAGTA
Statistics
Matches: 828, Mismatches: 161, Indels: 122
0.75 0.14 0.11
Matches are distributed among these distances:
80 3 0.00
81 56 0.07
82 185 0.22
83 1 0.00
84 1 0.00
85 7 0.01
86 4 0.00
87 5 0.01
88 357 0.43
89 174 0.21
90 33 0.04
91 2 0.00
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (88 bp):
TCTTCGATCTACTTCACGCCAATACATGAAGACAAGATCTTTTACCTTTGATCTACTTCATGCCG
ATACATGAAGACAAGATCTGCTT
Found at i:37930090 original size:134 final size:126
Alignment explanation
Indices: 37929940--37930275 Score: 372
Period size: 134 Copynumber: 2.6 Consensus size: 126
37929930 ACCTTTGATC
* * * * *
37929940 TACTTCACGCCGATACATAAAGACAAGATCTGCTTTCTTCGATCTACTTTGCCACCAGTATGGGA
1 TACTTCAAGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTTGCCACCAATATGGGA
* * *
37930005 AGACAAGATCTGCAATCTTCAATCCACTTCGTAACCAATATAGGAAGACAGGATTTACTTTCTTC
66 AGAC-A-A---G--ATCTTCAATCCACTTCCT-ACCAATATAGGAAGACAGGATCTACTATCTTC
37930070 GATA
123 GATA
*
37930074 TACTTCAAGCCAATACATGAAGACAAGATTTGCTTTCTTTGATCTACTTTGCCACCAATATGGGA
1 TACTTCAAGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTTGCCACCAATATGGGA
* * *
37930139 AGACAAGATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATC
66 AGACAAGATCTTCAATCCACTTCCTACCAATATAGGAAGACAGGATCTACTATCTTCGATA
* * * * * * *
37930200 CACTTCGCTA-CCAATCCAGGAAGACAGGATTTGCTTTCTTCGATCTAC-TT-CACGCCAATATA
1 TACTT--CAAGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTTGC-CACCAATATG
*
37930262 TGAAGACAAGATCT
63 GGAAGACAAGATCT
37930276 ACTTTATTTG
Statistics
Matches: 178, Mismatches: 21, Indels: 14
0.84 0.10 0.07
Matches are distributed among these distances:
125 1 0.01
126 59 0.33
127 50 0.28
128 2 0.01
129 1 0.01
132 1 0.01
133 1 0.01
134 63 0.35
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (126 bp):
TACTTCAAGCCAATACATGAAGACAAGATTTGCTTTCTTCGATCTACTTTGCCACCAATATGGGA
AGACAAGATCTTCAATCCACTTCCTACCAATATAGGAAGACAGGATCTACTATCTTCGATA
Found at i:37930104 original size:44 final size:43
Alignment explanation
Indices: 37929525--37930672 Score: 561
Period size: 44 Copynumber: 26.6 Consensus size: 43
37929515 TCAAGGAGAT
* * *
37929525 AAGATTTATATCTTCGATCTACTTCATGCCAATACATGAAGAC
1 AAGATTTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * *
37929568 AATATATGTC-ATCTTTGATCTACTTCACGCCAATACATGAAGAC
1 AAGAT-T-TCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* ** * * *
37929612 AAGATCTGCTACCTTTGATCTACTTCATGCCGATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * ** *
37929656 AAGATCTT-TTACCCTT-GATCTACTTCATGCTGATACATGAAGAT
1 AAGAT-TTCTT--TCTTCGATCTACTTCACGCCAATACATGAAGAC
*
37929700 AAGATCAGT-TTTCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGAT--TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
** * * *
37929744 AAGATCTTCTACCTTTGATCTACTTCATGCCGATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
37929788 AAGA-TTCATTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
1 AAGATTTC--TTTCTTCGATCTACTTCACGCCAATACATGAAGAC
** * * *
37929832 AAGATATTCTACCTTTGATCTACTTCATGCCGATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * *
37929876 AATATATGT-TTTCTTCTATCTACTTCACGCCAGTACATGAAGAC
1 AAGAT-T-TCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * *
37929920 AAGATCTGTTACCTTTGATCTACTTCACGCCGATACATAAAGAC
1 AAGATTTCTT-TCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * ***
37929964 AAGATCTGCTTTCTTCGATCTACTTTGC-CACCAGTATGGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTAC-TT-CACGCCAATACATGAAGAC
* ** * * * * *
37930009 AAGATCTGCAATCTTCAATCCACTTCGTA-ACCAATATAGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTC--ACGCCAATACATGAAGAC
* * *
37930054 AGGATTTACTTTCTTCGATATACTTCAAGCCAATACATGAAGAC
1 AAGATTT-CTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * ***
37930098 AAGATTTGCTTTCTTTGATCTACTTTGC-CACCAATATGGGAAGAC
1 AAGATTT-CTTTCTTCGATCTAC-TT-CACGCCAATACATGAAGAC
* * * *
37930143 AAGA------TCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATTTCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* * * * * * * *
37930180 AGGATCTGCTATCTTCGATCCACTTCGCTACCAATCCAGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* *
37930225 AGGATTTGCTTTCTTCGATCTACTTCACGCCAATATATGAAGAC
1 AAGATTT-CTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * * * ***
37930269 AAGATCTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* * * *
37930314 AAGA------TCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATTTCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* * * *
37930351 AGGATCTGCTATCTTCGATCTACTTCACGCAAATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * ***
37930395 AAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* * * * *
37930440 AA-A-----ATCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATTTCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* * * *
37930477 AGGATCTGCTATCTTCGATCTACTTCACACCAATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
* * * * ***
37930521 AAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTC-ACGCCAATACATGAAGAC
* * * *
37930566 AAGA------TCTTCGATCCACTTC-CTACCAATATAGGAAGAC
1 AAGATTTCTTTCTTCGATCTACTTCAC-GCCAATACATGAAGAC
* * * *
37930603 AGGATCTGCTATCTTAGATCTACTTCACGCCAATACATGAAGAC
1 AAGAT-TTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
*
37930647 AAGATCTGCTTTCTTCGATCTACTTC
1 AAGAT-TTCTTTCTTCGATCTACTTC
37930673 GCCACCAGTA
Statistics
Matches: 878, Mismatches: 161, Indels: 131
0.75 0.14 0.11
Matches are distributed among these distances:
36 5 0.01
37 72 0.08
38 48 0.05
42 4 0.00
43 14 0.02
44 547 0.62
45 183 0.21
46 5 0.01
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (43 bp):
AAGATTTCTTTCTTCGATCTACTTCACGCCAATACATGAAGAC
Found at i:37930213 original size:82 final size:83
Alignment explanation
Indices: 37930083--37930653 Score: 436
Period size: 82 Copynumber: 6.8 Consensus size: 83
37930073 ATACTTCAAG
* * * * * * *
37930083 CCAATACATGAAGACAAGATTTGCTTTCTTTGATCTACTTTGCCACCAATATGGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGAT
37930148 CTTCGATCCACTTC-CTA
66 CTTCGATCCACTTCACTA
* * * **
37930165 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTACCAATCCAGGAAGACAGGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACA--A-
* * *
37930230 TTGCTTTCTTCGATCTACTTCAC-G
63 --G--ATCTTCGATCCACTTCACTA
* * * * * * *
37930254 CCAATATATGAAGACAAGATCTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGAT
37930319 CTTCGATCCACTTC-CTA
66 CTTCGATCCACTTCACTA
* * * *
37930336 CCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCA--AATACATGAAGACAAGA
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGC-CACCAATATAGGAAGACAAGA
* * *
37930399 TCTGCTTTCCTCGATCTACTTCGCCA
65 --T-C--T--TCGATCCACTTCACTA
* * *
37930425 CCAATATGGGAAGACAA-A------ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACA--A-
*
37930482 CTGCTATCTTCGATCTACTTCAC-A
63 --G--ATCTTCGATCCACTTCACTA
* * * * *
37930506 CCAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGAT
37930571 CTTCGATCCACTTC-CTA
66 CTTCGATCCACTTCACTA
* * * * * *
37930588 CCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTC-ACGCCAATACATGAAGACAAGAT
1 CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGAT
37930652 CT
66 CT
37930654 GCTTTCTTCG
Statistics
Matches: 383, Mismatches: 70, Indels: 73
0.73 0.13 0.14
Matches are distributed among these distances:
80 1 0.00
81 52 0.14
82 190 0.50
83 3 0.01
84 6 0.02
86 2 0.01
87 5 0.01
88 25 0.07
89 98 0.26
90 1 0.00
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (83 bp):
CCAATATAGGAAGACAAGATCTGCTATCTTCGATCTACTTCGCCACCAATATAGGAAGACAAGAT
CTTCGATCCACTTCACTA
Found at i:37930239 original size:171 final size:171
Alignment explanation
Indices: 37929975--37930420 Score: 619
Period size: 171 Copynumber: 2.6 Consensus size: 171
37929965 AGATCTGCTT
* * * * * *
37929975 TCTTCGATCTACTTTGCC-ACCAGTATGGGAAGACAAGATCTGCAATCTTCAATCCACTTCG-TA
1 TCTTCGATCCAC-TT-CCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCT-
* * *
37930038 ACCAATATAGGAAGACAGGATTTACTTTCTTCGATATACTTCAAGCCAATACATGAAGACAAGAT
63 ACCAATACAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCAAGCCAATACATGAAGACAAGAT
* * * * *
37930103 TTGCTTTCTTTGATCTACTTTGCCACCAATATGGGAAGACAAGA
128 CTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGA
37930147 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTACC
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTACC
* * *
37930212 AATCCAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCACGCCAATATATGAAGACAAGATCTA
66 AATACAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCAAGCCAATACATGAAGACAAGATCTA
37930277 CTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGA
131 CTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGA
* * * *
37930318 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCAC-GCA
1 TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTACC
* * * *
37930382 AATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTC
66 AATACAGGAAGACAGGATTTGCTTTCTTCGATCTACTTC
37930421 GCCACCAATA
Statistics
Matches: 246, Mismatches: 26, Indels: 6
0.88 0.09 0.02
Matches are distributed among these distances:
170 37 0.15
171 197 0.80
172 12 0.05
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.29
Consensus pattern (171 bp):
TCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCCACTTCGCTACC
AATACAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCAAGCCAATACATGAAGACAAGATCTA
CTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGA
Found at i:37930270 original size:126 final size:123
Alignment explanation
Indices: 37930189--37930779 Score: 729
Period size: 126 Copynumber: 4.7 Consensus size: 123
37930179 CAGGATCTGC
** * *
37930189 TATCTTCGATCCACTTCGCTACCAATCCAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCACG
1 TATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACG
* * * *
37930254 CCAATATATGAAGACAAGATCTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAG
65 CCAATACATGAAGACAAGAT-TGC--T-TTCGATCTACTTCGCCACCAATATGGGAAGACAAG
37930317 -ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
1 TATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
*
37930381 AAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAA-
66 CAATACATGAAGACAAGAT-TGC-TT--TCGATCTACTTCGCCACCAATATGGGAAGACAAG
* *
37930442 AATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
1 TATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
37930507 CAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAG
66 CAATACATGAAGACAAGAT-TGC-TT--TCGATCTACTTCGCCACCAATATGGGAAGACAAG
*
37930569 -ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGC
1 TATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
*
37930633 CAATACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAGATC
66 CAATACATGAAGACAAGAT-TGC--T-TTCGATCTACTTCGCCACCAATATGGGAAGAC-A-A--
37930698 TG
123 -G
* * * *
37930700 TACCTTCGATCCACTTCCTACC--------AA-ACATGACCTGCTATCTTCGATCTACTTCACGG
1 TATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
*
37930756 TAATACATGAAGACAAGATCTGCT
66 CAATACATGAAGACAAGAT-TGCT
37930780 ATTTTCAACC
Statistics
Matches: 431, Mismatches: 20, Indels: 31
0.89 0.04 0.06
Matches are distributed among these distances:
121 1 0.00
123 50 0.12
124 3 0.01
125 2 0.00
126 333 0.77
127 19 0.04
128 2 0.00
131 1 0.00
132 20 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.28
Consensus pattern (123 bp):
TATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
CAATACATGAAGACAAGATTGCTTTCGATCTACTTCGCCACCAATATGGGAAGACAAG
Found at i:37930456 original size:297 final size:301
Alignment explanation
Indices: 37929887--37930572 Score: 916
Period size: 297 Copynumber: 2.3 Consensus size: 301
37929877 ATATATGTTT
* * * * * * *
37929887 TCTTCTATCTACTTCACGCCAGTACATGAAGACAAGATCTG-TTACCTTTGATCTACTTCACGCC
1 TCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCTGCTTTCC-TCGATCTACTTCACGCC
* * * * * * * *
37929951 GATACATAAAGACAAGATCTGCTTTCTTCGATCTACTTTGCCACCAGTATGGGAAGACAAGATCT
65 AATATATGAAGACAAGATCTACTTTATTCGATCTAATTCGCCACCAATATGGGAAGACAAGA--T
* * *
37930016 GCAATCTTCAATCCACTTCGTAACCAATATAGGAAGACAGGATTTACTTTCTTCGATATACTTCA
128 G-AATCTTCAATCCACTTCCTAACCAATATAGGAAGACAGGATCTACTATCTTCGATATACTTCA
* * * * * *
37930081 AGCCAATACATGAAGACAAGATTTGCTTTCTTTGATCTACTTTGCCACCAATATGGGAAGACAAG
192 AGCAAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAA
37930146 ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
257 ATCTTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
* * * * *
37930191 TCTTCGATCCACTTCGCTACCAATCCAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCACGCC
1 TCTTCGATCCACTTCAC-ACCAATACAGGAAGACAAGATCTGCTTTCCTCGATCTACTTCACGCC
*
37930256 AATATATGAAGACAAGATCTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGAC-A-A-G-
65 AATATATGAAGACAAGATCTACTTTATTCGATCTAATTCGCCACCAATATGGGAAGACAAGATGA
* * * *
37930317 ATCTTCGATCCACTTCCT-ACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGC
130 ATCTTCAATCCACTTCCTAACCAATATAGGAAGACAGGATCTACTATCTTCGATATACTTCAAGC
37930381 AAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAAATC
195 AAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAAATC
37930446 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
260 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
* * * *
37930488 TCTTCGATCTACTTCACACCAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACC
1 TCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCTGCTTTCCTCGATCTACTTC-ACGCC
**
37930553 AATATGGGAAGACAAGATCT
65 AATATATGAAGACAAGATCT
37930573 TCGATCCACT
Statistics
Matches: 334, Mismatches: 45, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
296 37 0.11
297 178 0.53
298 16 0.05
300 1 0.00
303 1 0.00
304 15 0.04
305 83 0.25
306 3 0.01
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (301 bp):
TCTTCGATCCACTTCACACCAATACAGGAAGACAAGATCTGCTTTCCTCGATCTACTTCACGCCA
ATATATGAAGACAAGATCTACTTTATTCGATCTAATTCGCCACCAATATGGGAAGACAAGATGAA
TCTTCAATCCACTTCCTAACCAATATAGGAAGACAGGATCTACTATCTTCGATATACTTCAAGCA
AATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAAATCT
TCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTA
Found at i:37930498 original size:252 final size:253
Alignment explanation
Indices: 37930190--37930698 Score: 867
Period size: 252 Copynumber: 2.0 Consensus size: 253
37930180 AGGATCTGCT
* * * *
37930190 ATCTTCGATCCACTTCGCTACCAATCCAGGAAGACAGGATTTGCTTTCTTCGATCTACTTCACGC
1 ATCTTCGATCCACTTCGCTACCAATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
* * *
37930255 CAATATATGAAGACAAGATCTACTTTATTTGATCTAATTCGCCACCAATATGGGAAGACAAGATC
66 CAATACATGAAGACAAGATCTACTTTACTCGATCTAATTCGCCACCAATATGGGAAGACAAGATC
*
37930320 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACGCAAAT
131 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGCAAAT
37930385 ACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAA
196 ACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAA
*
37930443 ATCTTCGATCCACTTC-CTACCAATATAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
1 ATCTTCGATCCACTTCGCTACCAATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
* * *
37930507 CAATACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAGATC
66 CAATACATGAAGACAAGATCTACTTTACTCGATCTAATTCGCCACCAATATGGGAAGACAAGATC
*
37930572 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGCCAAT
131 TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGCAAAT
* * *
37930637 ACATGAAGACAAGATCTGCTTTCTTCGATCTACTTCGCCACCAGTATGGGAAGACAAG
196 ACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAA
37930695 ATCT
1 ATCT
37930699 GTACCTTCGA
Statistics
Matches: 240, Mismatches: 16, Indels: 1
0.93 0.06 0.00
Matches are distributed among these distances:
252 224 0.93
253 16 0.07
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (253 bp):
ATCTTCGATCCACTTCGCTACCAATACAGGAAGACAGGATCTGCTATCTTCGATCTACTTCACAC
CAATACATGAAGACAAGATCTACTTTACTCGATCTAATTCGCCACCAATATGGGAAGACAAGATC
TTCGATCCACTTCCTACCAATATAGGAAGACAGGATCTGCTATCTTAGATCTACTTCACGCAAAT
ACATGAAGACAAGATCTGCTTTCCTCGATCTACTTCGCCACCAATATGGGAAGACAAA
Found at i:37936980 original size:23 final size:23
Alignment explanation
Indices: 37936954--37937010 Score: 60
Period size: 23 Copynumber: 2.5 Consensus size: 23
37936944 AATAATATAT
*
37936954 ATATAAATATGAGAAAAAAATAA
1 ATATAAATATAAGAAAAAAATAA
** * *
37936977 ATATGTATATAAGAAAACAATGA
1 ATATAAATATAAGAAAAAAATAA
*
37937000 ATATACATATA
1 ATATAAATATA
37937011 TATATAAATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.61, C:0.04, G:0.09, T:0.26
Consensus pattern (23 bp):
ATATAAATATAAGAAAAAAATAA
Found at i:37940298 original size:25 final size:25
Alignment explanation
Indices: 37940270--37940385 Score: 92
Period size: 25 Copynumber: 4.7 Consensus size: 25
37940260 TTCTCTCGAT
* *
37940270 CCATATAACGGGTAGCTCATGTGAG
1 CCATATAACGGGAAGCTCATGCGAG
* * *
37940295 CCATGTAACGGGAAGCTTATCCGAG
1 CCATATAACGGGAAGCTCATGCGAG
* ** **
37940320 CTATATAATAGGAAGCTCATAAGAG
1 CCATATAACGGGAAGCTCATGCGAG
* *
37940345 TCATAT-TCGGGAAGCTCATGCGAG
1 CCATATAACGGGAAGCTCATGCGAG
* *
37940369 CCA-AAAACGGGTAGCTC
1 CCATATAACGGGAAGCTC
37940386 CGAAAAGTCA
Statistics
Matches: 67, Mismatches: 23, Indels: 3
0.72 0.25 0.03
Matches are distributed among these distances:
23 1 0.01
24 24 0.36
25 42 0.63
ACGTcount: A:0.32, C:0.21, G:0.26, T:0.22
Consensus pattern (25 bp):
CCATATAACGGGAAGCTCATGCGAG
Found at i:37940497 original size:26 final size:26
Alignment explanation
Indices: 37940460--37940517 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
37940450 GGAAGCTCCG
37940460 AAGAGCTATTAATCAG-AAAACTCACA
1 AAGAGCTATTAATC-GTAAAACTCACA
* *
37940486 AAGAGTCT-TTAATCGTGAAGCTCACA
1 AAGAG-CTATTAATCGTAAAACTCACA
37940512 AAGAGC
1 AAGAGC
37940518 CATATAACGG
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
25 2 0.07
26 24 0.86
27 2 0.07
ACGTcount: A:0.43, C:0.19, G:0.17, T:0.21
Consensus pattern (26 bp):
AAGAGCTATTAATCGTAAAACTCACA
Found at i:37949608 original size:32 final size:32
Alignment explanation
Indices: 37949554--37949614 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
37949544 ATACCATATT
*
37949554 ATAGAGCTGTTCTTGAAAAACAATTGTTCATA
1 ATAGAGCTGCTCTTGAAAAACAATTGTTCATA
*
37949586 ATAGAAGCTGCTC-TGAACAACAATTGTTC
1 ATAG-AGCTGCTCTTGAAAAACAATTGTTC
37949615 TAAACATAGT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
32 19 0.73
33 7 0.27
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.31
Consensus pattern (32 bp):
ATAGAGCTGCTCTTGAAAAACAATTGTTCATA
Found at i:37949790 original size:16 final size:16
Alignment explanation
Indices: 37949764--37949816 Score: 61
Period size: 16 Copynumber: 3.2 Consensus size: 16
37949754 CAAATTTAGA
37949764 TTCTCAAACAATAATTG
1 TTCT-AAACAATAATTG
* *
37949781 TTCTAAACAATAACTA
1 TTCTAAACAATAATTG
* *
37949797 TTCTAAACAAGAGTTG
1 TTCTAAACAATAATTG
37949813 TTCT
1 TTCT
37949817 TCCAGAAGAG
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
16 26 0.87
17 4 0.13
ACGTcount: A:0.40, C:0.17, G:0.08, T:0.36
Consensus pattern (16 bp):
TTCTAAACAATAATTG
Found at i:37952942 original size:30 final size:30
Alignment explanation
Indices: 37952920--37952991 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
37952910 TAGCCTTCGA
37952920 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37952950 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37952980 AGTAGTTTTTGT
1 AGTAGTTTTTGT
37952992 ACTCTTCCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.14, C:0.11, G:0.26, T:0.49
Consensus pattern (30 bp):
AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
Found at i:37953009 original size:30 final size:29
Alignment explanation
Indices: 37952920--37953009 Score: 92
Period size: 30 Copynumber: 3.0 Consensus size: 29
37952910 TAGCCTTCGA
* *
37952920 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGCCCTTA-CCTTAGG
* *
37952950 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGCCCTTA-CCTTAGG
*
37952980 AGTAGTTTTTGTACTCTTCCCTT-CCTTAGG
1 AGTAGTTTTTGT-CT-TGCCCTTACCTTAGG
37953010 CTTTGAGGCA
Statistics
Matches: 55, Mismatches: 3, Indels: 4
0.89 0.05 0.06
Matches are distributed among these distances:
30 48 0.87
31 2 0.04
32 5 0.09
ACGTcount: A:0.13, C:0.17, G:0.23, T:0.47
Consensus pattern (29 bp):
AGTAGTTTTTGTCTTGCCCTTACCTTAGG
Found at i:37956188 original size:16 final size:16
Alignment explanation
Indices: 37956167--37956203 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
37956157 GACAATATGT
37956167 GAGGATGAATCTTTTC
1 GAGGATGAATCTTTTC
37956183 GAGGATGAATCTTTTC
1 GAGGATGAATCTTTTC
37956199 GAGGA
1 GAGGA
37956204 AATAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (16 bp):
GAGGATGAATCTTTTC
Found at i:37957168 original size:21 final size:21
Alignment explanation
Indices: 37957142--37957182 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37957132 TTTTATTATT
37957142 TTAAATAT-TTGTTCTTAGTTC
1 TTAAATATCTTGTT-TTAGTTC
*
37957163 TTAAATTTCTTGTTTTAGTT
1 TTAAATATCTTGTTTTAGTT
37957183 TTTTTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.22, C:0.07, G:0.10, T:0.61
Consensus pattern (21 bp):
TTAAATATCTTGTTTTAGTTC
Found at i:37959074 original size:47 final size:47
Alignment explanation
Indices: 37959017--37959176 Score: 257
Period size: 47 Copynumber: 3.4 Consensus size: 47
37959007 GTCACAGTAA
*
37959017 TGCAGATAAACTGCCACTTAATAATATTATGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* * *
37959064 TGTAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACTACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* *
37959111 TGCAGATAAATTGCCACTTTATAATATTGTGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
*
37959158 TGCAGATAAACTACCACTT
1 TGCAGATAAACTGCCACTT
37959177 CTTCCTTCTT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (47 bp):
TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
Found at i:37959247 original size:20 final size:20
Alignment explanation
Indices: 37959222--37959260 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37959212 ATATGACCAC
*
37959222 AAAAATCACTTTTTCACTTT
1 AAAAATCAATTTTTCACTTT
*
37959242 AAAAATTAATTTTTCACTT
1 AAAAATCAATTTTTCACTT
37959261 CGGCATGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATCAATTTTTCACTTT
Found at i:37962312 original size:30 final size:30
Alignment explanation
Indices: 37962290--37963111 Score: 1644
Period size: 30 Copynumber: 27.4 Consensus size: 30
37962280 TAGCCTTCGA
37962290 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962320 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962350 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962380 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962410 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962440 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962470 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962500 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962530 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962560 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962590 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962620 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962650 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962680 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962710 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962740 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962770 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962800 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962830 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962860 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962890 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962920 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962950 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37962980 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37963010 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37963040 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37963070 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
1 AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
37963100 AGTAGTTTTTGT
1 AGTAGTTTTTGT
37963112 ACTCTTCCCT
Statistics
Matches: 792, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 792 1.00
ACGTcount: A:0.13, C:0.13, G:0.27, T:0.47
Consensus pattern (30 bp):
AGTAGTTTTTGTCTTGGCCTTAGCTTTAGG
Found at i:37966308 original size:16 final size:16
Alignment explanation
Indices: 37966287--37966323 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
37966277 GACAATATGT
37966287 GAGGATGAATCTTTTC
1 GAGGATGAATCTTTTC
37966303 GAGGATGAATCTTTTC
1 GAGGATGAATCTTTTC
37966319 GAGGA
1 GAGGA
37966324 AATAAATAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.27, C:0.11, G:0.30, T:0.32
Consensus pattern (16 bp):
GAGGATGAATCTTTTC
Found at i:37967288 original size:21 final size:21
Alignment explanation
Indices: 37967262--37967302 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
37967252 TTTTATTATT
37967262 TTAAATAT-TTGTTCTTAGTTC
1 TTAAATATCTTGTT-TTAGTTC
*
37967283 TTAAATTTCTTGTTTTAGTT
1 TTAAATATCTTGTTTTAGTT
37967303 TTTTTTTTGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 13 0.72
22 5 0.28
ACGTcount: A:0.22, C:0.07, G:0.10, T:0.61
Consensus pattern (21 bp):
TTAAATATCTTGTTTTAGTTC
Found at i:37969194 original size:47 final size:47
Alignment explanation
Indices: 37969137--37969296 Score: 257
Period size: 47 Copynumber: 3.4 Consensus size: 47
37969127 GTCACAGTAA
*
37969137 TGCAGATAAACTGCCACTTAATAATATTATGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* * *
37969184 TGTAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACTACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
* *
37969231 TGCAGATAAATTGCCACTTTATAATATTGTGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
*
37969278 TGCAGATAAACTACCACTT
1 TGCAGATAAACTGCCACTT
37969297 CTTCCTTCTT
Statistics
Matches: 102, Mismatches: 11, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 102 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (47 bp):
TGCAGATAAACTGCCACTTAATAATATTGTGGACAAGCCACCACTTT
Found at i:37969367 original size:20 final size:20
Alignment explanation
Indices: 37969342--37969380 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
37969332 ATATGACCAC
*
37969342 AAAAATCACTTTTTCACTTT
1 AAAAATCAATTTTTCACTTT
*
37969362 AAAAATTAATTTTTCACTT
1 AAAAATCAATTTTTCACTT
37969381 CGGCATGTGA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.15, G:0.00, T:0.46
Consensus pattern (20 bp):
AAAAATCAATTTTTCACTTT
Found at i:37970640 original size:135 final size:135
Alignment explanation
Indices: 37970487--37970761 Score: 523
Period size: 135 Copynumber: 2.0 Consensus size: 135
37970477 AAGAGAGGAG
* *
37970487 AAAGGAGGGGAATGACAATGAAAAGGAAAAGAATAAAATATGGAACAAAGAGTGTTCTTCATCTT
1 AAAGGAGGGGAATGACAATAAAAAGGAAAAGAATAAAAGATGGAACAAAGAGTGTTCTTCATCTT
37970552 GTCTAGGTTCAATGAACATCACACAAGGTAAGGATGAAGAGAATGGTATGTTGAGAGGATAAAGG
66 GTCTAGGTTCAATGAACATCACACAAGGTAAGGATGAAGAGAATGGTATGTTGAGAGGATAAAGG
37970617 AGCAA
131 AGCAA
*
37970622 AAAGGAGGGGAATGACAATAAAAAGGAAAAGAATGAAAGATGGAACAAAGAGTGTTCTTCATCTT
1 AAAGGAGGGGAATGACAATAAAAAGGAAAAGAATAAAAGATGGAACAAAGAGTGTTCTTCATCTT
37970687 GTCTAGGTTCAATGAACATCACACAAGGTAAGGATGAAGAGAATGGTATGTTGAGAGGATAAAGG
66 GTCTAGGTTCAATGAACATCACACAAGGTAAGGATGAAGAGAATGGTATGTTGAGAGGATAAAGG
37970752 AGCAA
131 AGCAA
37970757 AAAGG
1 AAAGG
37970762 GGATTATGGG
Statistics
Matches: 137, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
135 137 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (135 bp):
AAAGGAGGGGAATGACAATAAAAAGGAAAAGAATAAAAGATGGAACAAAGAGTGTTCTTCATCTT
GTCTAGGTTCAATGAACATCACACAAGGTAAGGATGAAGAGAATGGTATGTTGAGAGGATAAAGG
AGCAA
Found at i:37971247 original size:28 final size:28
Alignment explanation
Indices: 37971204--37971259 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
37971194 TTGGGATGTG
*
37971204 ACAATTCTGGTGAAGTGCAAAGGACTAA
1 ACAATTCTGGTAAAGTGCAAAGGACTAA
37971232 ACAATTCTGGTAAAGTGCAAAGGACTAA
1 ACAATTCTGGTAAAGTGCAAAGGACTAA
37971260 CATCTTCCAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.41, C:0.14, G:0.23, T:0.21
Consensus pattern (28 bp):
ACAATTCTGGTAAAGTGCAAAGGACTAA
Found at i:37979097 original size:30 final size:30
Alignment explanation
Indices: 37979063--37979130 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
37979053 TAATTGTACA
* *
37979063 TTCATTTTAATCAC-CAAACTTTAGTAAATT
1 TTCATTTTAATAACTC-AACTTTAGTAAACT
* *
37979093 TTCATTTTGATAACTCAACTTTAGTAAGCT
1 TTCATTTTAATAACTCAACTTTAGTAAACT
37979123 TTCATTTT
1 TTCATTTT
37979131 GGTCACTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 32 0.97
31 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.06, T:0.47
Consensus pattern (30 bp):
TTCATTTTAATAACTCAACTTTAGTAAACT
Found at i:37985292 original size:21 final size:21
Alignment explanation
Indices: 37985263--37985305 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
37985253 TTTGGGTGGA
37985263 TCAGCTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
*
37985284 TCAGGTCTCACGAGCTTCTGT
1 TCAGCTCTCACGAGCTTCTGT
37985305 T
1 T
37985306 GGCGTGTTTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.30, G:0.21, T:0.35
Consensus pattern (21 bp):
TCAGCTCTCACGAGCTTCTGT
Found at i:37987698 original size:16 final size:16
Alignment explanation
Indices: 37987679--37987713 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
37987669 TAGTAATTTT
37987679 AATGTTAAAG-GACTAA
1 AATGTTAAAGTGA-TAA
37987695 AATGTTAAAGTGATAA
1 AATGTTAAAGTGATAA
37987711 AAT
1 AAT
37987714 TACAAGGACT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 16 0.89
17 2 0.11
ACGTcount: A:0.51, C:0.03, G:0.17, T:0.29
Consensus pattern (16 bp):
AATGTTAAAGTGATAA
Found at i:37990932 original size:75 final size:76
Alignment explanation
Indices: 37990809--37991128 Score: 398
Period size: 75 Copynumber: 4.2 Consensus size: 76
37990799 AACTAATAAT
* * * * *
37990809 TATAATGATGTGCCCAGCACTAGTCAGATAAACTGACGAAAG-TTGCGCCAAACGCTAGTCGAAT
1 TATAATGGTGTGCCCTGCACTAGTCAGATAAACTGATGAAAGATTGCGCCAAGCACTAGTCGAAT
37990873 AAA-CTGACAAA
66 AAATC-GACAAA
* *
37990884 TATAATGGTGTGCCCTGCACTGGTCAGATAAACTGATGAAAG-TTGCGCCCAGCACTAGTCGAAT
1 TATAATGGTGTGCCCTGCACTAGTCAGATAAACTGATGAAAGATTGCGCCAAGCACTAGTCGAAT
37990948 AAATCGACAAA
66 AAATCGACAAA
* * *
37990959 TATAATGGTGTGCCCTGCACTAGTCAGATAAATTGATG-AAGATTGCGCCAAGCACTAGTTGGAT
1 TATAATGGTGTGCCCTGCACTAGTCAGATAAACTGATGAAAGATTGCGCCAAGCACTAGTCGAAT
37991023 AAATCGACAAA
66 AAATCGACAAA
* * * ** **
37991034 TATAATGGTGTGCCCTGCACTAGTCAGATAAATTGA-CAAAGATTGCACCAAGTGCTAGTCGGGT
1 TATAATGGTGTGCCCTGCACTAGTCAGATAAACTGATGAAAGATTGCGCCAAGCACTAGTCGAAT
* *
37991098 AAACCGACAGA
66 AAATCGACAAA
* *
37991109 TATAGAGGGTGTGCCTTGCA
1 TATA-ATGGTGTGCCCTGCA
37991129 GTACTTGGTT
Statistics
Matches: 219, Mismatches: 22, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
74 3 0.01
75 202 0.92
76 14 0.06
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (76 bp):
TATAATGGTGTGCCCTGCACTAGTCAGATAAACTGATGAAAGATTGCGCCAAGCACTAGTCGAAT
AAATCGACAAA
Found at i:37990950 original size:35 final size:35
Alignment explanation
Indices: 37990820--37990943 Score: 99
Period size: 35 Copynumber: 3.4 Consensus size: 35
37990810 ATAATGATGT
*
37990820 GCCCAGCACTAGTCAGATAAACTGACGAAAGTTGC
1 GCCCAGCACTAGTCAGATAAACTGATGAAAGTTGC
* * * * *
37990855 GCCAAACGCTAGTC-GAATAAACTGACAAAT-ATAATGGTGT
1 GCCCAGCACTAGTCAG-ATAAACTG----ATGA-AA-GTTGC
* *
37990895 GCCCTGCACTGGTCAGATAAACTGATGAAAGTTGC
1 GCCCAGCACTAGTCAGATAAACTGATGAAAGTTGC
37990930 GCCCAGCACTAGTC
1 GCCCAGCACTAGTC
37990944 GAATAAATCG
Statistics
Matches: 65, Mismatches: 15, Indels: 18
0.66 0.15 0.18
Matches are distributed among these distances:
34 1 0.02
35 34 0.52
36 4 0.06
37 1 0.02
38 1 0.02
39 3 0.05
40 20 0.31
41 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.23, T:0.20
Consensus pattern (35 bp):
GCCCAGCACTAGTCAGATAAACTGATGAAAGTTGC
Found at i:37990990 original size:40 final size:40
Alignment explanation
Indices: 37990878--37991073 Score: 148
Period size: 40 Copynumber: 5.2 Consensus size: 40
37990868 CGAATAAACT
*
37990878 GACAAATATAATGGTGTGCCCTGCACTGGTCAGATAAA-C
1 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATC
* * *
37990917 TG----ATGA-AA-GTTGCGCCCAGCACTAGTC-GAATAAATC
1 -GACAAAT-ATAATGGTGTGCCCTGCACTAGTCAG-ATAAATC
*
37990953 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATT
1 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATC
** * * ** **
37990993 GA-TGA-A-GAT--TGCGCCAAGCACTAGTTGGATAAATC
1 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATC
*
37991028 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATT
1 GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATC
37991068 GACAAA
1 GACAAA
37991074 GATTGCACCA
Statistics
Matches: 115, Mismatches: 26, Indels: 30
0.67 0.15 0.18
Matches are distributed among these distances:
34 1 0.01
35 43 0.37
36 6 0.05
37 4 0.03
38 4 0.03
39 5 0.04
40 51 0.44
41 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (40 bp):
GACAAATATAATGGTGTGCCCTGCACTAGTCAGATAAATC
Found at i:37992826 original size:17 final size:18
Alignment explanation
Indices: 37992801--37992835 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
37992791 GGAAATAATA
*
37992801 TTTTGGAAAA-TAATTTT
1 TTTTAGAAAATTAATTTT
37992818 TTTTAGAAAATTAATTTT
1 TTTTAGAAAATTAATTTT
37992836 ATATTTTTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (18 bp):
TTTTAGAAAATTAATTTT
Found at i:37999719 original size:16 final size:15
Alignment explanation
Indices: 37999690--37999735 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
37999680 TTAATGAACG
37999690 TTAATGTTAA-TAAA
1 TTAATGTTAATTAAA
37999704 TTAATGTGTAATTAAA
1 TTAATGT-TAATTAAA
*
37999720 CTAAT-TATAATTAAA
1 TTAATGT-TAATTAAA
37999735 T
1 T
37999736 AATAAGTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 7 0.26
15 12 0.44
16 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (15 bp):
TTAATGTTAATTAAA
Found at i:38005958 original size:16 final size:15
Alignment explanation
Indices: 38005929--38005974 Score: 51
Period size: 15 Copynumber: 3.1 Consensus size: 15
38005919 TTAATGAACG
38005929 TTAATGTTAA-TAAA
1 TTAATGTTAATTAAA
38005943 TTAATGTGTAATTAAA
1 TTAATGT-TAATTAAA
*
38005959 CTAAT-TATAATTAAA
1 TTAATGT-TAATTAAA
38005974 T
1 T
38005975 AATAAGTTAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
14 7 0.26
15 12 0.44
16 8 0.30
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (15 bp):
TTAATGTTAATTAAA
Found at i:38009546 original size:33 final size:33
Alignment explanation
Indices: 38009504--38009566 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
38009494 TGAATTTTTT
38009504 TTTTGTGAGATACCACTCACATGTCCTAGCTTA
1 TTTTGTGAGATACCACTCACATGTCCTAGCTTA
*
38009537 TTTTGTGAGATACCCCTCACATGTCCTAGC
1 TTTTGTGAGATACCACTCACATGTCCTAGC
38009567 GATCGATACA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.22, C:0.27, G:0.16, T:0.35
Consensus pattern (33 bp):
TTTTGTGAGATACCACTCACATGTCCTAGCTTA
Found at i:38014219 original size:3 final size:3
Alignment explanation
Indices: 38014211--38014243 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
38014201 AATAAATAGG
38014211 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
38014244 CATCAAAGTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:38016958 original size:21 final size:21
Alignment explanation
Indices: 38016934--38016983 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
38016924 ACTCACATGC
*
38016934 CCATGTGGCTAAGGGACACGA
1 CCATGTGGCTAAGGCACACGA
* *
38016955 CCATGTGTCTAAGGCACACGC
1 CCATGTGGCTAAGGCACACGA
*
38016976 CCGTGTGG
1 CCATGTGG
38016984 AAATCGAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.32, T:0.18
Consensus pattern (21 bp):
CCATGTGGCTAAGGCACACGA
Found at i:38018426 original size:14 final size:16
Alignment explanation
Indices: 38018407--38018439 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
38018397 AAATTTCTAT
38018407 CACATACC-AT-TAAC
1 CACATACCAATATAAC
38018421 CACATACCAATATAAC
1 CACATACCAATATAAC
38018437 CAC
1 CAC
38018440 CTATAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 2 0.12
16 7 0.41
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.18
Consensus pattern (16 bp):
CACATACCAATATAAC
Found at i:38019745 original size:54 final size:54
Alignment explanation
Indices: 38019673--38019783 Score: 195
Period size: 54 Copynumber: 2.1 Consensus size: 54
38019663 AACTATACCG
* *
38019673 TATGAACTTACCAAGGAATAACAACAATAGAAGAAGTGTCAGGGACTAATCTGC
1 TATGAACTGACCAAGGAATAACAACAATAGAAGAAGTGTCAGGGACCAATCTGC
*
38019727 TATGAACTGACCAGGGAATAACAACAATAGAAGAAGTGTCAGGGACCAATCTGC
1 TATGAACTGACCAAGGAATAACAACAATAGAAGAAGTGTCAGGGACCAATCTGC
38019781 TAT
1 TAT
38019784 TTTTCCTTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.17, G:0.22, T:0.20
Consensus pattern (54 bp):
TATGAACTGACCAAGGAATAACAACAATAGAAGAAGTGTCAGGGACCAATCTGC
Found at i:38021112 original size:66 final size:66
Alignment explanation
Indices: 38020803--38021113 Score: 437
Period size: 66 Copynumber: 4.7 Consensus size: 66
38020793 GTGCAAGAAC
* *
38020803 TACTTCAGTTTATTCGATGAGGCACTGGGTGCCAAATACATCGATAAGCATTGGGCGCAATTGAA
1 TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGAGCATTGGGCGCAATTGAA
38020868 T
66 T
* * * *
38020869 TACTTCGGTTTACCCGATAAGGCACTGGGTGCCAAATATATCGATGAGCATTGGGCGCAATTGAA
1 TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGAGCATTGGGCGCAATTGAA
38020934 T
66 T
* * * *
38020935 TACTTAAGTTTATCTGATGAGGCACTGGGTGCCAAATACATCGATGAACATTGGGCGCAATCGAA
1 TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGAGCATTGGGCGCAATTGAA
38021000 T
66 T
* * * * * *
38021001 TAC-TAAGGTTTATCCAATGGGGCACTGGGTGCCAAATACATCGATGAGTACTT-GGCGTAATTA
1 TACTTCA-GTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGAGCA-TTGGGCGCAATTG
38021064 AAT
64 AAT
*
38021067 TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATATATCGATGA
1 TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGA
38021114 ACACTGGACA
Statistics
Matches: 216, Mismatches: 26, Indels: 6
0.87 0.10 0.02
Matches are distributed among these distances:
65 3 0.01
66 209 0.97
67 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.28
Consensus pattern (66 bp):
TACTTCAGTTTATCCGATGAGGCACTGGGTGCCAAATACATCGATGAGCATTGGGCGCAATTGAA
T
Found at i:38022220 original size:31 final size:32
Alignment explanation
Indices: 38022177--38022243 Score: 109
Period size: 31 Copynumber: 2.1 Consensus size: 32
38022167 AGGCTTAACA
38022177 ACTTAGGTATTCATCAACTACTCAAAAAAGAC
1 ACTTAGGTATTCATCAACTACTCAAAAAAGAC
* *
38022209 ACTT-GGTATTCATCAACTATTCAAACAAGAC
1 ACTTAGGTATTCATCAACTACTCAAAAAAGAC
38022240 ACTT
1 ACTT
38022244 CCATCATCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
31 29 0.88
32 4 0.12
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.28
Consensus pattern (32 bp):
ACTTAGGTATTCATCAACTACTCAAAAAAGAC
Found at i:38022947 original size:25 final size:25
Alignment explanation
Indices: 38022913--38022985 Score: 92
Period size: 25 Copynumber: 2.9 Consensus size: 25
38022903 CGGATACCGA
* * *
38022913 AATTGCTCACACGAGTTGTGAATAT
1 AATTGCTCACACGAGATATAAATAT
38022938 AATTGCTCACACGAGATATAAATAT
1 AATTGCTCACACGAGATATAAATAT
* * *
38022963 AATTTCTCATACGAGCTATAAAT
1 AATTGCTCACACGAGATATAAAT
38022986 CGGGACATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 42 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (25 bp):
AATTGCTCACACGAGATATAAATAT
Found at i:38030565 original size:34 final size:32
Alignment explanation
Indices: 38030502--38030568 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 32
38030492 GCCATATACT
*
38030502 AGGAGATTATGGTACAGAAAAAATGGACAGCC
1 AGGAGATTATGGTACAGAAAAAAAGGACAGCC
38030534 AGGAGATTATGGTACAGAAAAAAAAGAGACAGCC
1 AGGAGATTATGGTACAG-AAAAAAAG-GACAGCC
38030568 A
1 A
38030569 ACAGATCAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 17 0.53
33 7 0.22
34 8 0.25
ACGTcount: A:0.48, C:0.12, G:0.27, T:0.13
Consensus pattern (32 bp):
AGGAGATTATGGTACAGAAAAAAAGGACAGCC
Found at i:38034406 original size:1 final size:1
Alignment explanation
Indices: 38034402--38034432 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
38034392 ATTTTTTTGG
38034402 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
38034433 ACATATGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:38041122 original size:61 final size:61
Alignment explanation
Indices: 38040994--38041132 Score: 172
Period size: 61 Copynumber: 2.3 Consensus size: 61
38040984 TGATTTTTTT
* * *
38040994 TTCAATTTAATATCTAAACTTGATATTTTTTTTCTAATTTGGTACTTAAATTTTTATTAAG
1 TTCAATTTAGTACCTAAACTTGACATTTTTTTTCTAATTTGGTACTTAAATTTTTATTAAG
** * * * *
38041055 CCCAATTTAGTACCTGAACTTGGCATTTTTTTTCTAATTTGGTACTTAACCTTTTT-TTAGG
1 TTCAATTTAGTACCTAAACTTGACATTTTTTTTCTAATTTGGTACTTAA-ATTTTTATTAAG
*
38041116 TTCAATTTAGTAACTAA
1 TTCAATTTAGTACCTAA
38041133 TTTGTTAAAT
Statistics
Matches: 64, Mismatches: 13, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
61 59 0.92
62 5 0.08
ACGTcount: A:0.28, C:0.13, G:0.09, T:0.50
Consensus pattern (61 bp):
TTCAATTTAGTACCTAAACTTGACATTTTTTTTCTAATTTGGTACTTAAATTTTTATTAAG
Found at i:38041654 original size:31 final size:30
Alignment explanation
Indices: 38041583--38041657 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 30
38041573 CCCAAAAAGA
38041583 TTAAGTA-CAAACTTAAGAAAAAATGTCAAG
1 TTAAGTACCAAA-TTAAGAAAAAATGTCAAG
* * *
38041613 TTTAGATACCAAATTAGGAAAAAGTGTCAAG
1 TTAAG-TACCAAATTAAGAAAAAATGTCAAG
38041644 TTCAAGTACCAAAT
1 TT-AAGTACCAAAT
38041658 GTTATATTAA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
30 4 0.11
31 28 0.74
32 6 0.16
ACGTcount: A:0.48, C:0.12, G:0.15, T:0.25
Consensus pattern (30 bp):
TTAAGTACCAAATTAAGAAAAAATGTCAAG
Found at i:38042741 original size:21 final size:23
Alignment explanation
Indices: 38042691--38042747 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
38042681 ATTTTCTATC
38042691 ATATTATTAAATTAATTTTAAAA
1 ATATTATTAAATTAATTTTAAAA
*
38042714 ATAATTA-TAATTTAA-TTTAAAA
1 AT-ATTATTAAATTAATTTTAAAA
*
38042736 GTATTAGTTAAA
1 ATATTA-TTAAA
38042748 AAGTTATGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.14
22 8 0.29
23 12 0.43
24 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (23 bp):
ATATTATTAAATTAATTTTAAAA
Found at i:38045118 original size:21 final size:23
Alignment explanation
Indices: 38045068--38045124 Score: 64
Period size: 23 Copynumber: 2.5 Consensus size: 23
38045058 ATTTTCTATC
38045068 ATATTATTAAATTAATTTTAAAA
1 ATATTATTAAATTAATTTTAAAA
*
38045091 ATAATTA-TAATTTAA-TTTAAAA
1 AT-ATTATTAAATTAATTTTAAAA
*
38045113 GTATTAGTTAAA
1 ATATTA-TTAAA
38045125 AAGTTATGCA
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 4 0.14
22 8 0.29
23 12 0.43
24 4 0.14
ACGTcount: A:0.51, C:0.00, G:0.04, T:0.46
Consensus pattern (23 bp):
ATATTATTAAATTAATTTTAAAA
Found at i:38049701 original size:2 final size:2
Alignment explanation
Indices: 38049696--38049735 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
38049686 CACTTGGACC
*
38049696 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
38049736 CGATTACCTT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:38054092 original size:26 final size:26
Alignment explanation
Indices: 38054056--38054114 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
38054046 CAAGTAATAT
*
38054056 AGATGAGGTGGCTCTCTCTTTTCTAA
1 AGATGAGGTGGCTCTCTCTATTCTAA
*
38054082 AGATGAGGTGGCTCTTTCTATTCTAA
1 AGATGAGGTGGCTCTCTCTATTCTAA
38054108 AGATGAG
1 AGATGAG
38054115 ATATTAGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (26 bp):
AGATGAGGTGGCTCTCTCTATTCTAA
Found at i:38064598 original size:22 final size:23
Alignment explanation
Indices: 38064571--38064615 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
38064561 AGGTATCTAC
*
38064571 AAATCAAATC-TCTAATATTACA
1 AAATCAAATCTTCTAAGATTACA
*
38064593 AAATCATATCTTCTAAGATTACA
1 AAATCAAATCTTCTAAGATTACA
38064616 TATCATATCT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.47, C:0.18, G:0.02, T:0.33
Consensus pattern (23 bp):
AAATCAAATCTTCTAAGATTACA
Found at i:38064619 original size:17 final size:17
Alignment explanation
Indices: 38064597--38064649 Score: 52
Period size: 19 Copynumber: 3.0 Consensus size: 17
38064587 ATTACAAAAT
38064597 CATATCTTCTAAGATTA
1 CATATCTTCTAAGATTA
* *
38064614 CATATCATATCTACGATTG
1 CATATC-T-TCTAAGATTA
* *
38064633 CATATCCTCGAAGATTA
1 CATATCTTCTAAGATTA
38064650 TGTTTCCATA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
17 13 0.46
18 1 0.04
19 14 0.50
ACGTcount: A:0.34, C:0.21, G:0.09, T:0.36
Consensus pattern (17 bp):
CATATCTTCTAAGATTA
Found at i:38064620 original size:22 final size:22
Alignment explanation
Indices: 38064568--38064625 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
38064558 AAAAGGTATC
* *
38064568 TACAAATCAAATC-TCTAATAT
1 TACAAATCATATCTTCTAAGAT
38064589 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATCTTCTAAGAT
*
38064612 TACATATCATATCT
1 TACAAATCATATCT
38064626 ACGATTGCAT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 19 0.59
23 10 0.31
ACGTcount: A:0.43, C:0.19, G:0.02, T:0.36
Consensus pattern (22 bp):
TACAAATCATATCTTCTAAGAT
Found at i:38085783 original size:11 final size:11
Alignment explanation
Indices: 38085710--38085785 Score: 52
Period size: 12 Copynumber: 6.8 Consensus size: 11
38085700 ATTCCAAAAA
*
38085710 TAATATTATTT
1 TAATATTAATT
38085721 TAATAATTTAATGT
1 TAAT-A-TTAAT-T
38085735 TAA-ATTTAATT
1 TAATA-TTAATT
*
38085746 TAATACTTATTT
1 TAATA-TTAATT
*
38085758 TAATAGT-ATT
1 TAATATTAATT
38085768 T--TATTAATT
1 TAATATTAATT
38085777 TAATATTAA
1 TAATATTAA
38085786 AGTGATTAAG
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 3 0.06
9 4 0.08
10 3 0.06
11 15 0.29
12 19 0.37
13 4 0.08
14 4 0.08
ACGTcount: A:0.41, C:0.01, G:0.03, T:0.55
Consensus pattern (11 bp):
TAATATTAATT
Found at i:38087045 original size:23 final size:26
Alignment explanation
Indices: 38087017--38087077 Score: 76
Period size: 26 Copynumber: 2.5 Consensus size: 26
38087007 ATCAACTCTT
38087017 ATGAGCTTACCG-T-TTCAACTC-G-
1 ATGAGCTTACCGTTCTTCAACTCGGA
*
38087039 ATAGAGCTTACTGTTCTTCAACTCGGA
1 AT-GAGCTTACCGTTCTTCAACTCGGA
38087066 ATGAGCTTACCG
1 ATGAGCTTACCG
38087078 ATCATGGTTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
22 2 0.06
23 9 0.28
24 1 0.03
25 8 0.25
26 10 0.31
27 2 0.06
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.31
Consensus pattern (26 bp):
ATGAGCTTACCGTTCTTCAACTCGGA
Found at i:38105429 original size:35 final size:35
Alignment explanation
Indices: 38105390--38105509 Score: 116
Period size: 35 Copynumber: 3.3 Consensus size: 35
38105380 GCAGCTCTAA
*
38105390 TTGGATAAACCAACGATATTTGCACCTAGCGCTAG
1 TTGGATAAACCAACGATATTTGCACCAAGCGCTAG
* * **
38105425 TTGGATGAACCAACGAATGTATTTAGTGAGCCAAGCTTTAG
1 TTGGATAAACCAACG-A--TATTT-G-CA-CCAAGCGCTAG
*
38105466 TTGGATAAACCAACGATATTTGCACCCAA-TGCTAG
1 TTGGATAAACCAACGATATTTGCA-CCAAGCGCTAG
38105501 TTGGATAAA
1 TTGGATAAA
38105510 TTGACGAATG
Statistics
Matches: 68, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
35 26 0.38
36 6 0.09
37 1 0.01
38 10 0.15
39 1 0.01
40 2 0.03
41 22 0.32
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (35 bp):
TTGGATAAACCAACGATATTTGCACCAAGCGCTAG
Done.