Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 124 of 163
Found at i:39904989 original size:19 final size:19
Alignment explanation
Indices: 39904965--39905058 Score: 143
Period size: 19 Copynumber: 4.8 Consensus size: 19
39904955 AATCATATCT
*
39904965 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
39904984 TCTAAGATTGTATATATCATA
1 TCTAAGATTG--CATATCATA
39905005 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
39905024 TCTAGGATTGCATATCATA
1 TCTAAGATTGCATATCATA
39905043 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
39905059 CTCAAAAATT
Statistics
Matches: 68, Mismatches: 5, Indels: 4
0.88 0.06 0.05
Matches are distributed among these distances:
19 50 0.74
21 18 0.26
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:39920165 original size:31 final size:29
Alignment explanation
Indices: 39920110--39920170 Score: 86
Period size: 31 Copynumber: 2.0 Consensus size: 29
39920100 AAATAACATT
*
39920110 TCAGTTACTAAATTTTCAAAAGTGATAAA
1 TCAGTTACTAAATTTTCAAAAGTGACAAA
*
39920139 TCAGTTACTAATATTTATGAAAAGTGACAAA
1 TCAGTTACTAA-ATTT-TCAAAAGTGACAAA
39920170 T
1 T
39920171 TAGTCACCTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 11 0.39
30 4 0.14
31 13 0.46
ACGTcount: A:0.44, C:0.10, G:0.11, T:0.34
Consensus pattern (29 bp):
TCAGTTACTAAATTTTCAAAAGTGACAAA
Found at i:39923286 original size:20 final size:20
Alignment explanation
Indices: 39923261--39923300 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
39923251 CGTAAAATGA
*
39923261 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
39923281 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
39923301 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:39923290 original size:34 final size:35
Alignment explanation
Indices: 39923246--39923312 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
39923236 CAGTAAAATA
*
39923246 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
39923280 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
39923313 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:39923316 original size:14 final size:15
Alignment explanation
Indices: 39923240--39923316 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
39923230 GATTGCCAGT
* *
39923240 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
39923254 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
39923268 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
39923288 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
39923303 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
39923317 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:39924315 original size:7 final size:7
Alignment explanation
Indices: 39924303--39924327 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
39924293 GATTGGTTTT
39924303 GAAATAA
1 GAAATAA
39924310 GAAATAA
1 GAAATAA
39924317 GAAATAA
1 GAAATAA
39924324 GAAA
1 GAAA
39924328 AATAGTAAAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.72, C:0.00, G:0.16, T:0.12
Consensus pattern (7 bp):
GAAATAA
Found at i:39925210 original size:27 final size:30
Alignment explanation
Indices: 39925166--39925241 Score: 79
Period size: 27 Copynumber: 2.6 Consensus size: 30
39925156 TTAAAATTAA
*
39925166 AATTTGATTTCTTTAAAAC-AATAAATTC-AT
1 AATTTAATTT-TTTAAAACAAAT-AATTCTAT
*
39925196 AA-TT-ATTTTTTAAAAGAAATAATTCTAT
1 AATTTAATTTTTTAAAACAAATAATTCTAT
39925224 AATTTAATTCTTTTAAAA
1 AATTTAATT-TTTTAAAA
39925242 ATTTATAATT
Statistics
Matches: 40, Mismatches: 1, Indels: 9
0.80 0.02 0.18
Matches are distributed among these distances:
27 12 0.30
28 11 0.28
29 4 0.10
30 5 0.12
31 8 0.20
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.46
Consensus pattern (30 bp):
AATTTAATTTTTTAAAACAAATAATTCTAT
Found at i:39934468 original size:25 final size:25
Alignment explanation
Indices: 39934450--39934530 Score: 119
Period size: 25 Copynumber: 3.2 Consensus size: 25
39934440 AAGCTCCTCT
39934450 GAGCTGAATAACGGGAAGCTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
39934475 GAGCTGAATAACGGGAAGCTCATGC
1 GAGCTGAATAACGGGAAGCTCATGC
* * *
39934500 GAGCT-AAGTATCGAGAAGCTCATGA
1 GAGCTGAA-TAACGGGAAGCTCATGC
39934525 GAGCTG
1 GAGCTG
39934531 TGGTGTGTCT
Statistics
Matches: 51, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
24 2 0.04
25 49 0.96
ACGTcount: A:0.32, C:0.19, G:0.32, T:0.17
Consensus pattern (25 bp):
GAGCTGAATAACGGGAAGCTCATGC
Found at i:39937658 original size:11 final size:10
Alignment explanation
Indices: 39937618--39937670 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 10
39937608 GGCCCATTTT
39937618 TATTTTAAAA
1 TATTTTAAAA
39937628 -ATTTTAAAA
1 TATTTTAAAA
* *
39937637 AATTTAAAAAA
1 TATTT-TAAAA
39937648 GTATTTTAAAAA
1 -TATTTT-AAAA
39937660 TATTTTAAAA
1 TATTTTAAAA
39937670 T
1 T
39937671 TAAAAAAATT
Statistics
Matches: 36, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
9 9 0.25
10 9 0.25
11 10 0.28
12 8 0.22
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (10 bp):
TATTTTAAAA
Found at i:39937676 original size:30 final size:30
Alignment explanation
Indices: 39937618--39937708 Score: 98
Period size: 31 Copynumber: 3.0 Consensus size: 30
39937608 GGCCCATTTT
*
39937618 TATTTTAAAAAT-TTTAAAAAATTTAAAAAA
1 TATTTTAAAAATATTT-TAAAATTTAAAAAA
39937648 GTATTTTAAAAATATTTTAAAA-TTAAAAAA
1 -TATTTTAAAAATATTTTAAAATTTAAAAAA
**
39937678 -ATTAAAAAAAAGTATTTTAAAATTTAAAAAA
1 TATT-TTAAAAA-TATTTTAAAATTTAAAAAA
39937709 AATTAAAAAA
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
28 3 0.06
29 5 0.09
30 18 0.34
31 24 0.45
32 3 0.06
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.37
Consensus pattern (30 bp):
TATTTTAAAAATATTTTAAAATTTAAAAAA
Found at i:39937678 original size:41 final size:42
Alignment explanation
Indices: 39937618--39937699 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 42
39937608 GGCCCATTTT
* *
39937618 TATTTTAAAAATTTTAAAAAATT-TAAAAAAGTATTTTAAAAA
1 TATTTTAAAAA-TTAAAAAAATTAAAAAAAAGTATTTTAAAAA
39937660 TATTTT-AAAATTAAAAAAATTAAAAAAAAGTATTTTAAAA
1 TATTTTAAAAATTAAAAAAATTAAAAAAAAGTATTTTAAAA
39937700 TTTAAAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 10 0.27
41 21 0.57
42 6 0.16
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (42 bp):
TATTTTAAAAATTAAAAAAATTAAAAAAAAGTATTTTAAAAA
Found at i:39937705 original size:31 final size:30
Alignment explanation
Indices: 39937655--39937718 Score: 103
Period size: 32 Copynumber: 2.1 Consensus size: 30
39937645 AAAGTATTTT
39937655 AAAAATATTTTAAAATT-AAAAAAATTAAA
1 AAAAATATTTTAAAATTAAAAAAAATTAAA
39937684 AAAAAGTATTTTAAAATTTAAAAAAAATTAAA
1 AAAAA-TATTTTAAAA-TTAAAAAAAATTAAA
39937716 AAA
1 AAA
39937719 GTATGTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
29 5 0.16
30 10 0.31
31 2 0.06
32 15 0.47
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.30
Consensus pattern (30 bp):
AAAAATATTTTAAAATTAAAAAAAATTAAA
Found at i:39937708 original size:71 final size:73
Alignment explanation
Indices: 39937618--39937751 Score: 209
Period size: 71 Copynumber: 1.9 Consensus size: 73
39937608 GGCCCATTTT
* * * *
39937618 TATTTTAAAAATTTTAAAAAATTTAAAAAAGTATTTTAAAAATATTTTAAAA-TTAAAAAAATTA
1 TATTTTAAAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTTAAAAAAATTA
39937682 AAAAAAAG
66 AAAAAAAG
*
39937690 TATTTT-AAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTTTAAAAAAT
1 TATTTTAAAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTTAAAAAAAT
39937752 AAGGCCCGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
71 41 0.73
72 15 0.27
ACGTcount: A:0.60, C:0.00, G:0.03, T:0.37
Consensus pattern (73 bp):
TATTTTAAAAATTTAAAAAAAATTAAAAAAGTATGTAAAAAATATTTTAAAATTTAAAAAAATTA
AAAAAAAG
Found at i:39937711 original size:41 final size:39
Alignment explanation
Indices: 39937666--39937751 Score: 102
Period size: 41 Copynumber: 2.1 Consensus size: 39
39937656 AAAATATTTT
*
39937666 AAAATTAAAAAAATTAAAAAAAAGTATTTTAAAATTTAAAA
1 AAAATTAAAAAAATT-TAAAAAAGTATTTTAAAATTT-AAA
* *
39937707 AAAATTAAAAAAGTATGTAAAAAA-TATTTTAAAATTTTAA
1 AAAATTAAAAAA--ATTTAAAAAAGTATTTTAAAATTTAAA
39937747 AAAAT
1 AAAAT
39937752 AAGGCCCGGG
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
40 7 0.17
41 25 0.62
42 6 0.15
43 2 0.05
ACGTcount: A:0.65, C:0.00, G:0.03, T:0.31
Consensus pattern (39 bp):
AAAATTAAAAAAATTTAAAAAAGTATTTTAAAATTTAAA
Found at i:39944992 original size:43 final size:42
Alignment explanation
Indices: 39944944--39945190 Score: 329
Period size: 43 Copynumber: 5.8 Consensus size: 42
39944934 GTGTCGCTAA
*
39944944 CTTTAGCGGCGCTTTTCCTACAAACGCCGCTAAAGACCAGGAC
1 CTTTAGCGGCGCTTTTCC-ACAAACGCCGCTAAAGACCATGAC
39944987 CTTTAGCGGCGCTTTTCCCACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGCTTTT-CCACAAACGCCGCTAAAGACCATGAC
* * *
39945030 CTTTAGCGACACATTTTACACAAACGCCGCTAAAGACCATGAC
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTAAAGACCATGAC
* *
39945073 CTTTAGCGGTGCTTTTACCACAAACGCCGCTAAAGACCAAGAC
1 CTTTAGCGGCGCTTTT-CCACAAACGCCGCTAAAGACCATGAC
*
39945116 CTTTAGCGGCACTTTTTCCACAAACGCCGCTAAAGACCA--A-
1 CTTTAGCGGCGC-TTTTCCACAAACGCCGCTAAAGACCATGAC
* * *
39945156 CTTTAGCGGCGCTTTCCCCAAAAACGCCACTAAAG
1 CTTTAGCGGCGCTTT-TCCACAAACGCCGCTAAAG
39945191 GTCACGAAAA
Statistics
Matches: 184, Mismatches: 15, Indels: 13
0.87 0.07 0.06
Matches are distributed among these distances:
39 3 0.02
40 27 0.15
41 1 0.01
42 4 0.02
43 139 0.76
44 10 0.05
ACGTcount: A:0.29, C:0.32, G:0.17, T:0.21
Consensus pattern (42 bp):
CTTTAGCGGCGCTTTTCCACAAACGCCGCTAAAGACCATGAC
Found at i:39946249 original size:46 final size:46
Alignment explanation
Indices: 39946094--39946841 Score: 635
Period size: 46 Copynumber: 16.5 Consensus size: 46
39946084 AATGGAAAGT
* * * **
39946094 AGCACTTT-AACACTTCAATTTACAGCATTTAAACACTTCAGTTTGT
1 AGCA-TTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* * ** * * * *
39946140 AACACTTT-AACACATCAATTAACAACATTTATACACATCAA-TTAC
1 AGCA-TTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* * * **
39946185 AGCGA-TAAAACA-TCTCAATTTCCAGCAAC-TAAACAATTCAATTTGT
1 AGC-ATTTAAACACT-TCAATTTGCAGC-ACTTAAACACTTCAATTTAC
* *
39946231 AGCACTTAAACACTTCAATTTGCAGCACTTAAACGCTTCAATTTAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* *
39946277 AGCATTTAAACACTTCAATTTGCAGCA-GTAAACA-TATCAATTAAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTTAC
* * * * * *
39946322 AACATTTATACACCTT-AA-TTACAGCAATAAAACA-TCTCAATTTCC
1 AGCATTTAAACA-CTTCAATTTGCAGCACTTAAACACT-TCAATTTAC
** * * *
39946367 AGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTAAATAT-G
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* *
39946412 TGC---TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAT
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
*
39946455 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAT
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
39946501 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* * * *
39946547 AGTATTTAAACACTTAAATTTGCAGTACTTAAACA-TATCAATTAAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTTAC
** * * * *
39946593 AATATTTATACACCTCAATTAT--AGCGA-TAAAACA-TCTCAATTTCC
1 AGCATTTAAACACTTCAATT-TGCAGC-ACTTAAACACT-TCAATTTAC
** *
39946638 AGCAACTAAACACTTCAATTTGCAGCACTTAACCACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* * *
39946684 AACATTTAAACACTTCCATTTGCAGCACTTAAACA-TATCAATTAAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACT-TCAATTTAC
* * * * * *
39946730 AACATTTATACACCTCAA-TTACAGCGA-TAAAACA-TCTCAATTTCC
1 AGCATTTAAACACTTCAATTTGCAGC-ACTTAAACACT-TCAATTTAC
**
39946775 AGCAACTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
* *
39946821 AACATTTAAACACTTAAATTT
1 AGCATTTAAACACTTCAATTT
39946842 ACAAATCCAC
Statistics
Matches: 569, Mismatches: 103, Indels: 60
0.78 0.14 0.08
Matches are distributed among these distances:
42 36 0.06
43 2 0.00
44 13 0.02
45 146 0.26
46 367 0.64
47 5 0.01
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (46 bp):
AGCATTTAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTAC
Found at i:39946463 original size:23 final size:23
Alignment explanation
Indices: 39946094--39946844 Score: 529
Period size: 23 Copynumber: 33.0 Consensus size: 23
39946084 AATGGAAAGT
39946094 AGCACTTT-AACACTTCAATTTAC
1 AGCA-TTTAAACACTTCAATTTAC
* **
39946117 AGCATTTAAACACTTCAGTTTGT
1 AGCATTTAAACACTTCAATTTAC
* * *
39946140 AACACTTT-AACACATCAATTAAC
1 AGCA-TTTAAACACTTCAATTTAC
* * *
39946163 AACATTTATACACATCAA-TTAC
1 AGCATTTAAACACTTCAATTTAC
* *
39946185 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ATTTAAACACT-TCAATTTAC
** * **
39946208 AGCAACTAAACAATTCAATTTGT
1 AGCATTTAAACACTTCAATTTAC
* *
39946231 AGCACTTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946254 AGCACTTAAACGCTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
*
39946277 AGCATTTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946300 AGCA-GTAAACA-TATCAATTAAC
1 AGCATTTAAACACT-TCAATTTAC
* *
39946322 AACATTTATACACCTT-AA-TTAC
1 AGCATTTAAACA-CTTCAATTTAC
* * *
39946344 AGCAATAAAACA-TCTCAATTTCC
1 AGCATTTAAACACT-TCAATTTAC
** *
39946367 AGCAACTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* * * *
39946390 AGCACTTAAACACTTAAATAT-G
1 AGCATTTAAACACTTCAATTTAC
* *
39946412 TGC---TAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946432 AGCACTTAAACACTTCAATTTAT
1 AGCATTTAAACACTTCAATTTAC
*
39946455 AGCATTTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946478 AGCACTTAAACACTTCAATTTAT
1 AGCATTTAAACACTTCAATTTAC
*
39946501 AGCATTTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
*
39946524 AGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
* * *
39946547 AGTATTTAAACACTTAAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* * *
39946570 AGTACTTAAACA-TATCAATTAAC
1 AGCATTTAAACACT-TCAATTTAC
** * * *
39946593 AATATTTATACACCTCAA-TTAT
1 AGCATTTAAACACTTCAATTTAC
* *
39946615 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ATTTAAACACT-TCAATTTAC
** *
39946638 AGCAACTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946661 AGCACTTAACCACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
* * *
39946684 AACATTTAAACACTTCCATTTGC
1 AGCATTTAAACACTTCAATTTAC
* *
39946707 AGCACTTAAACA-TATCAATTAAC
1 AGCATTTAAACACT-TCAATTTAC
* * *
39946730 AACATTTATACACCTCAA-TTAC
1 AGCATTTAAACACTTCAATTTAC
* *
39946752 AGCGA-TAAAACA-TCTCAATTTCC
1 AGC-ATTTAAACACT-TCAATTTAC
** *
39946775 AGCAACTAAACACTTCAATTTGC
1 AGCATTTAAACACTTCAATTTAC
*
39946798 AGCACTTAAACACTTCAATTTAC
1 AGCATTTAAACACTTCAATTTAC
* *
39946821 AACATTTAAACACTTAAATTTAC
1 AGCATTTAAACACTTCAATTTAC
39946844 A
1 A
39946845 AATCCACCAT
Statistics
Matches: 570, Mismatches: 124, Indels: 68
0.75 0.16 0.09
Matches are distributed among these distances:
19 13 0.02
20 3 0.01
21 2 0.00
22 82 0.14
23 461 0.81
24 8 0.01
25 1 0.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (23 bp):
AGCATTTAAACACTTCAATTTAC
Found at i:39946676 original size:137 final size:137
Alignment explanation
Indices: 39946237--39946841 Score: 857
Period size: 137 Copynumber: 4.4 Consensus size: 137
39946227 TTGTAGCACT
*
39946237 TAAACACTTCAATTTGCAGCACTTAAACGCTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
* * *
39946302 CA-GTAAACATATCAATTAACAACATTTATACACCTTAATTACAGCAATAAAACATCTCAATTTC
66 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
39946366 CAGCAAC
131 CAGCAAC
* * **
39946373 TAAACACTTCAATTTGCAGCACTTAAACACTTAAATAT-GTGC---TAAACACTTCAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
* * * * * * *
39946434 CACTTAAACACT-TCAATTTATAGCATTTAAACACTTCAATTTGCAGC-ACTTAAACA-CTTCAA
66 CACTTAAACA-TATCAATTAACAACATTTATACACCTCAA-TTACAGCGA-TAAAACATC-TCAA
** **
39946496 TTTATAGCATT
127 TTTCCAGCAAC
* *
39946507 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGTATTTAAACACTTAAATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
* * *
39946572 TACTTAAACATATCAATTAACAATATTTATACACCTCAATTATAGCGATAAAACATCTCAATTTC
66 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
39946637 CAGCAAC
131 CAGCAAC
* * *
39946644 TAAACACTTCAATTTGCAGCACTTAACCACTTCAATTTACAACATTTAAACACTTCCATTTGCAG
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
39946709 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
66 CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
39946774 CAGCAAC
131 CAGCAAC
* *
39946781 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAACATTTAAACACTTAAATTT
1 TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTT
39946842 ACAAATCCAC
Statistics
Matches: 408, Mismatches: 49, Indels: 23
0.85 0.10 0.05
Matches are distributed among these distances:
132 21 0.05
133 29 0.07
134 60 0.15
135 3 0.01
136 35 0.09
137 210 0.51
138 50 0.12
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (137 bp):
TAAACACTTCAATTTGCAGCACTTAAACACTTCAATTTACAGCATTTAAACACTTCAATTTGCAG
CACTTAAACATATCAATTAACAACATTTATACACCTCAATTACAGCGATAAAACATCTCAATTTC
CAGCAAC
Found at i:39950684 original size:18 final size:16
Alignment explanation
Indices: 39950629--39950738 Score: 103
Period size: 16 Copynumber: 6.5 Consensus size: 16
39950619 AAACACAAAA
39950629 AAAATTTTAAAACACG
1 AAAATTTTAAAACACG
* *
39950645 AGAATTTTAGAGACACG
1 AAAATTTTA-AAACACG
*
39950662 GAAATTCTTAAAAACACG
1 AAAATT-TT-AAAACACG
39950680 AAAATTTTTGAAAACACG
1 AAAA-TTTT-AAAACACG
* *
39950698 ACAATTTTGAAACACG
1 AAAATTTTAAAACACG
* *
39950714 AGAATTTTGAAACACG
1 AAAATTTTAAAACACG
39950730 AGAAATTTT
1 A-AAATTTT
39950739 TTTTGAAAAC
Statistics
Matches: 78, Mismatches: 11, Indels: 9
0.80 0.11 0.09
Matches are distributed among these distances:
16 31 0.40
17 20 0.26
18 24 0.31
19 3 0.04
ACGTcount: A:0.47, C:0.13, G:0.14, T:0.26
Consensus pattern (16 bp):
AAAATTTTAAAACACG
Found at i:39950738 original size:17 final size:17
Alignment explanation
Indices: 39950630--39950847 Score: 114
Period size: 18 Copynumber: 12.4 Consensus size: 17
39950620 AACACAAAAA
*
39950630 AAATTTTAAAACACGAG
1 AAATTTTGAAACACGAG
*
39950647 -AATTTTAGAGACACG-G
1 AAATTTT-GAAACACGAG
*
39950663 AAATTCTTAAAAACACGA-
1 AAATT-TT-GAAACACGAG
39950681 AAATTTTTGAAAACACGA-
1 AAA-TTTTG-AAACACGAG
*
39950699 CAATTTTGAAACACGAG
1 AAATTTTGAAACACGAG
39950716 -AATTTTGAAACACGAG
1 AAATTTTGAAACACGAG
*
39950732 AAATTTTTTTTGAAAACACGATT
1 AAA----TTTTG-AAACACGA-G
*** *
39950755 TTTTTTTGAAACGCGA-
1 AAATTTTGAAACACGAG
39950771 AAATTTGTGAAACACGAG
1 AAATTT-TGAAACACGAG
*
39950789 -AATTGTTGAAATCAAGA-
1 AAATT-TTGAAA-CACGAG
39950806 AAATTTTGGAAAACACGA-
1 AAATTTT-G-AAACACGAG
39950824 AAATTTTTGAAACAC-AG
1 AAA-TTTTGAAACACGAG
*
39950841 AAGTTTT
1 AAATTTT
39950848 TAGAAAACAC
Statistics
Matches: 160, Mismatches: 18, Indels: 47
0.71 0.08 0.21
Matches are distributed among these distances:
16 39 0.24
17 45 0.28
18 49 0.31
19 14 0.09
21 5 0.03
22 8 0.05
ACGTcount: A:0.44, C:0.11, G:0.15, T:0.29
Consensus pattern (17 bp):
AAATTTTGAAACACGAG
Found at i:39950934 original size:36 final size:35
Alignment explanation
Indices: 39950809--39950938 Score: 88
Period size: 36 Copynumber: 3.6 Consensus size: 35
39950799 ATCAAGAAAA
* *
39950809 TTTTGGAAAACACGAAAATTTTTGAAACACAGAAGT
1 TTTTAGAAAAAACGAAAA-TTTTGAAACACAGAAGT
** * **
39950845 TTTTAGAAAACACAAAAAAAATTTTG-ATCATTGGAA-T
1 TTTTAG-AAA-A-AACGAAAATTTTGAAACA-CAGAAGT
* *
39950882 TTTTCAG--AACATGAAAATTTATGAAACACAGAAGT
1 TTTT-AGAAAAAACGAAAATTT-TGAAACACAGAAGT
39950917 TTTTAGAAAAAACGAAAATTTT
1 TTTTAGAAAAAACGAAAATTTT
39950939 TTTGGCGACA
Statistics
Matches: 69, Mismatches: 15, Indels: 21
0.66 0.14 0.20
Matches are distributed among these distances:
33 8 0.12
34 8 0.12
35 10 0.14
36 16 0.23
37 11 0.16
38 11 0.16
39 5 0.07
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.31
Consensus pattern (35 bp):
TTTTAGAAAAAACGAAAATTTTGAAACACAGAAGT
Found at i:39951505 original size:17 final size:18
Alignment explanation
Indices: 39951485--39951526 Score: 70
Period size: 17 Copynumber: 2.4 Consensus size: 18
39951475 TTTTGGGGCC
39951485 TTTCTTTTT-TCTTTTTT
1 TTTCTTTTTCTCTTTTTT
39951502 TTTCTTTTTCTCTTTTTT
1 TTTCTTTTTCTCTTTTTT
39951520 TTT-TTTT
1 TTTCTTTT
39951527 GCAGATTGGG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 13 0.54
18 11 0.46
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (18 bp):
TTTCTTTTTCTCTTTTTT
Found at i:39951805 original size:10 final size:11
Alignment explanation
Indices: 39951790--39951853 Score: 55
Period size: 10 Copynumber: 6.0 Consensus size: 11
39951780 CCCGACTGTG
39951790 ATTTTT-TTCT
1 ATTTTTCTTCT
39951800 ATTTTTCTTCT
1 ATTTTTCTTCT
39951811 -TTTTTCTTCCT
1 ATTTTTCTT-CT
*
39951822 TTTTTTCTTCT
1 ATTTTTCTTCT
*
39951833 -TTCTTT-TTTT
1 ATT-TTTCTTCT
*
39951843 CTTTTTCTTCT
1 ATTTTTCTTCT
39951854 TCAGGCTGAA
Statistics
Matches: 46, Mismatches: 2, Indels: 11
0.78 0.03 0.19
Matches are distributed among these distances:
10 22 0.48
11 16 0.35
12 8 0.17
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (11 bp):
ATTTTTCTTCT
Found at i:39951827 original size:12 final size:11
Alignment explanation
Indices: 39951791--39951855 Score: 71
Period size: 12 Copynumber: 5.8 Consensus size: 11
39951781 CCGACTGTGA
*
39951791 TTTTT-TTCTA
1 TTTTTCTTCTT
39951801 TTTTTCTTC-T
1 TTTTTCTTCTT
39951811 TTTTTCTTCCTT
1 TTTTTCTT-CTT
39951823 TTTTTCTTCTT
1 TTTTTCTTCTT
*
39951834 TCTTTTTTTCTT
1 T-TTTTCTTCTT
39951846 TTTCTTCTTC
1 TTT-TTCTTC
39951856 AGGCTGAACC
Statistics
Matches: 47, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
10 13 0.28
11 10 0.21
12 24 0.51
ACGTcount: A:0.02, C:0.20, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTTCTTCTT
Found at i:39952473 original size:30 final size:31
Alignment explanation
Indices: 39952348--39952478 Score: 128
Period size: 30 Copynumber: 4.4 Consensus size: 31
39952338 ATTTGGGGTA
* * *
39952348 AAAATGTAATTTTAG-GAAAATAT-GGGGCC
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
**
39952377 AAAATGTAATTTTT-AGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
* * **
39952407 AAAGTG-AAATTTTGAGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
**
39952437 GGAATGTAATTTTTGA-AAAGTTTAGGGGCC
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
39952467 AAAATGTAATTT
1 AAAATGTAATTT
39952479 ATGTTTTTTT
Statistics
Matches: 83, Mismatches: 15, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
29 25 0.30
30 50 0.60
31 8 0.10
ACGTcount: A:0.37, C:0.03, G:0.25, T:0.34
Consensus pattern (31 bp):
AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
Found at i:39952751 original size:16 final size:16
Alignment explanation
Indices: 39952730--39952760 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
39952720 TTTTGTTCGA
39952730 TTGTCCAAATTTTTTT
1 TTGTCCAAATTTTTTT
*
39952746 TTGTCCATATTTTTT
1 TTGTCCAAATTTTTT
39952761 CAAAGCCTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.16, C:0.13, G:0.06, T:0.65
Consensus pattern (16 bp):
TTGTCCAAATTTTTTT
Found at i:39952967 original size:74 final size:75
Alignment explanation
Indices: 39952869--39953532 Score: 969
Period size: 74 Copynumber: 8.7 Consensus size: 75
39952859 CTCGGCATAG
* * * *
39952869 GACCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTAAAAAAGACAGAAATTAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
*
39952933 ACCTCAGCGC
66 ACCTCAGCGT
* *
39952943 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTAAAAAAAGACAGAAATTAAAGAT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
39953007 ACCTCAGCGT
66 ACCTCAGCGT
* * *
39953017 GACCCGATGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTAAAAAAAGACAGAAATTAAAGAT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
39953081 ACCTCAGCGT
66 ACCTCAGCGT
*
39953091 GACCCGATGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAATGACAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAA-GACAGAAATTAAAAA
39953156 TACCTCAGCGT
65 TACCTCAGCGT
* *
39953167 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAA-ATAGAAATTAAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATT-AAAAA
39953231 TACCTCAGCGT
65 TACCTCAGCGT
39953242 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAAGACAGAAATTAAATT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT-AAAAAAGACAG-----AAA-T
39953307 TAAAAAAAATACCTCAGCGT
59 T---AAAAATACCTCAGCGT
*
39953327 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTTGAAAAAAAACAGAAATTAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTTT-AAAAAAGACAGAAATT---A
*
39953392 AAAATACCTCAACGT
61 AAAATACCTCAGCGT
*
39953407 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA-ACATAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT-AAAAAAGACAGAAATTAAAAA
39953471 TACCTCAGCGT
65 TACCTCAGCGT
*
39953482 GACCCGAGGCTCAACTCATCTCTCGTATTATGAGTTGATTTTTGAAAAAAG
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT-AAAAAAG
39953533 TAGTAATTGA
Statistics
Matches: 554, Mismatches: 21, Indels: 28
0.92 0.03 0.05
Matches are distributed among these distances:
74 186 0.34
75 132 0.24
76 77 0.14
77 3 0.01
78 8 0.01
79 12 0.02
80 58 0.10
81 3 0.01
82 3 0.01
83 2 0.00
85 55 0.10
86 15 0.03
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (75 bp):
GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
ACCTCAGCGT
Found at i:39953498 original size:240 final size:226
Alignment explanation
Indices: 39952869--39953532 Score: 989
Period size: 240 Copynumber: 2.9 Consensus size: 226
39952859 CTCGGCATAG
* * * *
39952869 GACCCAAGGCTCAACTCACTTCTCGCAATATGAGTTGA-TTTTAAAAAAGACAGAAATTAAAAAT
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
* *
39952933 ACCTCAGCGCGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA--TTTAAAAAAAGACAG
66 ACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA-ACAG
* *
39952996 AAATTAAAGATACCTCAGCGTGACCCGATGCTCAACTCACCTCTCGTATTATGAGTTGA--TTTA
130 AAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTA
*
39953059 AAAAAAGACAGAAATTAAAGATACCTCAGCGT
195 AAAAAAGACAGAAATTAAAAATACCTCAGCGT
*
39953091 GACCCGATGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAATGACAGAAATTAAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAA-GACAGAAATTAAAAA
*
39953156 TACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTG-AAAAAATAG
65 TACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAACAG
39953220 AAATTAAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT
130 AAATT-AAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTT
39953285 AAAAAAAGACAGAAATTAAATTTAAAAAAAATACCTCAGCGT
194 AAAAAAAGACAG-----AAA-TT---AAAAATACCTCAGCGT
*
39953327 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTTGAAAAAAAACAGAAATTAAAA
1 GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGA-TTTTT-AAAAAAGACAGAAATT---A
*
39953392 AAAATACCTCAACGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA
61 AAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAA
* *
39953457 ACATAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCATCTCTCGTATTATGAGTTGATT
126 ACAGAAATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATT
*
39953522 TTTGAAAAAAG
191 TTTAAAAAAAG
39953533 TAGTAATTGA
Statistics
Matches: 402, Mismatches: 18, Indels: 26
0.90 0.04 0.06
Matches are distributed among these distances:
222 33 0.08
223 10 0.02
224 71 0.18
225 57 0.14
226 3 0.01
227 15 0.04
232 3 0.01
233 2 0.00
236 52 0.13
237 14 0.03
238 6 0.01
240 124 0.31
241 12 0.03
ACGTcount: A:0.37, C:0.21, G:0.16, T:0.27
Consensus pattern (226 bp):
GACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAAAAAAGACAGAAATTAAAAAT
ACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAAAACAGA
AATTAAAAATACCTCAGCGTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTAA
AAAAAGACAGAAATTAAAAATACCTCAGCGT
Found at i:39954424 original size:14 final size:13
Alignment explanation
Indices: 39954405--39954451 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 13
39954395 TTCATCTCGA
39954405 TTTTTCTTTTTCTT
1 TTTTTCTTTTT-TT
39954419 TTTTTCTTTTTTT
1 TTTTTCTTTTTTT
39954432 TTGTTT-TTTTGTTGT
1 TT-TTTCTTTT-TT-T
39954447 TTTTT
1 TTTTT
39954452 TAGGTATAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
13 8 0.27
14 19 0.63
15 3 0.10
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.87
Consensus pattern (13 bp):
TTTTTCTTTTTTT
Found at i:39954432 original size:18 final size:18
Alignment explanation
Indices: 39954406--39954452 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
39954396 TCATCTCGAT
39954406 TTTTCTTTTTCTTTTTTTC
1 TTTT-TTTTTCTTTTTTTC
* *
39954425 TTTTTTTTTGTTTTTTTG
1 TTTTTTTTTCTTTTTTTC
39954443 TTGTTTTTTT
1 TT-TTTTTTT
39954453 AGGTATAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 14 0.56
19 11 0.44
ACGTcount: A:0.00, C:0.06, G:0.06, T:0.87
Consensus pattern (18 bp):
TTTTTTTTTCTTTTTTTC
Found at i:39960631 original size:15 final size:16
Alignment explanation
Indices: 39960611--39960640 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
39960601 TCTACGATGC
39960611 ATGAAGAA-AAATAAA
1 ATGAAGAAGAAATAAA
39960626 ATGAAGAAGAAATAA
1 ATGAAGAAGAAATAA
39960641 CCTTGGTTAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.70, C:0.00, G:0.17, T:0.13
Consensus pattern (16 bp):
ATGAAGAAGAAATAAA
Found at i:39961929 original size:18 final size:18
Alignment explanation
Indices: 39961903--39961937 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
39961893 CGATCCGATC
* *
39961903 AAAATACGAATATTTTTT
1 AAAACACGAAGATTTTTT
39961921 AAAACACGAAGATTTTT
1 AAAACACGAAGATTTTT
39961938 GAGACAATTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.37
Consensus pattern (18 bp):
AAAACACGAAGATTTTTT
Found at i:39961991 original size:16 final size:16
Alignment explanation
Indices: 39961972--39962206 Score: 103
Period size: 17 Copynumber: 13.4 Consensus size: 16
39961962 AACACAAAAA
39961972 AATTTT-AACACACGAG
1 AATTTTGAA-ACACGAG
* *
39961988 AATTTTAGAGACACGAA
1 AATTTT-GAAACACGAG
* *
39962005 AATTCTTAAAAACACGAA
1 AATT-TT-GAAACACGAG
* *
39962023 AATTTTTGAAAACGCGAC
1 AA-TTTTG-AAACACGAG
*
39962041 AATTTTGAAACACAAG
1 AATTTTGAAACACGAG
39962057 AATTTTGAAACACGAG
1 AATTTTGAAACACGAG
*
39962073 AATTTTTTTTTGAAAACACGATT
1 AA-----TTTTG-AAACACGA-G
** * *
39962096 TTTTTTGAAACGCGAA
1 AATTTTGAAACACGAG
39962112 AATTTGTGAAACACGAG
1 AATTT-TGAAACACGAG
* *
39962129 AATTGTTGAAATCAAGAA
1 AATT-TTGAAA-CACGAG
*
39962147 AATTTTGGAAAACACGAA
1 AATTTT-G-AAACACGAG
* *
39962165 AATTTTTGAAACACAAA
1 AA-TTTTGAAACACGAG
*
39962182 AATTTTTAGAAAACACGAA
1 AA-TTTT-G-AAACACGAG
39962201 AATTTT
1 AATTTT
39962207 TTTGATCATC
Statistics
Matches: 174, Mismatches: 25, Indels: 38
0.73 0.11 0.16
Matches are distributed among these distances:
16 32 0.18
17 57 0.33
18 53 0.30
19 19 0.11
21 5 0.03
22 8 0.05
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.29
Consensus pattern (16 bp):
AATTTTGAAACACGAG
Found at i:39962197 original size:19 final size:18
Alignment explanation
Indices: 39961954--39962279 Score: 174
Period size: 18 Copynumber: 18.3 Consensus size: 18
39961944 ATTATTATTT
* *
39961954 TTTTTAAAAACACAAAAAA
1 TTTTTGAAAACAC-GAAAA
* * *
39961973 ATTTT-AACACACGAGAA
1 TTTTTGAAAACACGAAAA
* *
39961990 TTTTAG-AGACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
39962007 TTCTTAAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
* *
39962025 TTTTTGAAAACGCGACAA
1 TTTTTGAAAACACGAAAA
39962043 -TTTTG-AAACAC-AAGAA
1 TTTTTGAAAACACGAA-AA
*
39962059 -TTTTG-AAACACGAGAATTTT
1 TTTTTGAAAACACGA-AA---A
***
39962079 TTTTTGAAAACACGATTT
1 TTTTTGAAAACACGAAAA
*
39962097 TTTTTG-AAACGCGAAAA
1 TTTTTGAAAACACGAAAA
* *
39962114 TTTGTG-AAACACGAGAA
1 TTTTTGAAAACACGAAAA
* * *
39962131 TTGTTGAAATCAAGAAAA
1 TTTTTGAAAACACGAAAA
*
39962149 TTTTGGAAAACACGAAAA
1 TTTTTGAAAACACGAAAA
*
39962167 TTTTTG-AAACACAAAAA
1 TTTTTGAAAACACGAAAA
39962184 TTTTTAGAAAACACGAAAA
1 TTTTT-GAAAACACGAAAA
*** * *
39962203 TTTTTTTGATCATCG-GAA
1 TTTTTGAAAACA-CGAAAA
* *
39962221 TTTTTGAGAACATGAAAA
1 TTTTTGAAAACACGAAAA
* *
39962239 TTTATG-AAACAC-AGAAG
1 TTTTTGAAAACACGA-AAA
*
39962256 TTTTTAGAAAAAACGAAAA
1 TTTTT-GAAAACACGAAAA
39962275 TTTTT
1 TTTTT
39962280 TTGGCGACAC
Statistics
Matches: 231, Mismatches: 57, Indels: 38
0.71 0.17 0.12
Matches are distributed among these distances:
15 1 0.00
16 19 0.08
17 76 0.33
18 88 0.38
19 33 0.14
20 1 0.00
21 5 0.02
22 8 0.03
ACGTcount: A:0.45, C:0.11, G:0.13, T:0.30
Consensus pattern (18 bp):
TTTTTGAAAACACGAAAA
Found at i:39962238 original size:72 final size:72
Alignment explanation
Indices: 39962147--39962282 Score: 209
Period size: 72 Copynumber: 1.9 Consensus size: 72
39962137 AAATCAAGAA
* *
39962147 AATTTTGGAAAACACGAAAATTTTTGAAACACAAAAATTTTTAGAAAACACGAAAATTTTTTTGA
1 AATTTTGGAAAACACGAAAATTTATGAAACACAAAAATTTTTAGAAAAAACGAAAATTTTTTTGA
39962212 TCATCGG
66 TCATCGG
* * * * *
39962219 AATTTTTGAGAACATGAAAATTTATGAAACACAGAAGTTTTTAGAAAAAACGAAAATTTTTTTG
1 AATTTTGGAAAACACGAAAATTTATGAAACACAAAAATTTTTAGAAAAAACGAAAATTTTTTTG
39962283 GCGACACGGG
Statistics
Matches: 57, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
72 57 1.00
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.33
Consensus pattern (72 bp):
AATTTTGGAAAACACGAAAATTTATGAAACACAAAAATTTTTAGAAAAAACGAAAATTTTTTTGA
TCATCGG
Found at i:39962486 original size:20 final size:20
Alignment explanation
Indices: 39962461--39962499 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
39962451 CGTGATCTTA
39962461 TTAAAACACGAGAATTTTTT
1 TTAAAACACGAGAATTTTTT
*
39962481 TTAAAACACGAGGATTTTT
1 TTAAAACACGAGAATTTTT
39962500 GAATATTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (20 bp):
TTAAAACACGAGAATTTTTT
Found at i:39962840 original size:15 final size:16
Alignment explanation
Indices: 39962822--39962856 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
39962812 TTTTTGGGCC
39962822 TTTTCTTTTT-TATTT
1 TTTTCTTTTTCTATTT
*
39962837 TTTTCTTTTTCTCTTT
1 TTTTCTTTTTCTATTT
39962853 TTTT
1 TTTT
39962857 TTTGCAGATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.03, C:0.11, G:0.00, T:0.86
Consensus pattern (16 bp):
TTTTCTTTTTCTATTT
Found at i:39963131 original size:10 final size:10
Alignment explanation
Indices: 39963118--39963184 Score: 70
Period size: 9 Copynumber: 6.9 Consensus size: 10
39963108 GACTGTGATA
39963118 TTTTT-TTCT
1 TTTTTCTTCT
39963127 ATTTTTCTTCT
1 -TTTTTCTTCT
39963138 TTTTTCTTCCT
1 TTTTTCTT-CT
39963149 TTTTT-TTCT
1 TTTTTCTTCT
*
39963158 TCTTTCTT-T
1 TTTTTCTTCT
39963167 TTTTTCTT-T
1 TTTTTCTTCT
*
39963176 TTCTTCTTC
1 TTTTTCTTC
39963185 GGGCTGAACC
Statistics
Matches: 50, Mismatches: 3, Indels: 8
0.82 0.05 0.13
Matches are distributed among these distances:
9 22 0.44
10 17 0.34
11 11 0.22
ACGTcount: A:0.01, C:0.19, G:0.00, T:0.79
Consensus pattern (10 bp):
TTTTTCTTCT
Found at i:39963155 original size:13 final size:13
Alignment explanation
Indices: 39963137--39963184 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
39963127 ATTTTTCTTC
39963137 TTTTTTCTTCCTT
1 TTTTTTCTTCCTT
39963150 TTTTTTCTT-CTT
1 TTTTTTCTTCCTT
*
39963162 TCTTTTT-TTTCTT
1 T-TTTTTCTTCCTT
*
39963175 TTTCTTCTTC
1 TTTTTTCTTC
39963185 GGGCTGAACC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
12 10 0.33
13 20 0.67
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTCTTCCTT
Found at i:39963166 original size:16 final size:16
Alignment explanation
Indices: 39963118--39963180 Score: 71
Period size: 16 Copynumber: 4.1 Consensus size: 16
39963108 GACTGTGATA
*
39963118 TTTTTTTCTATTTTTCT
1 TTTTTTTCT-TCTTTCT
39963135 TCTTTTTTCTTC---CT
1 T-TTTTTTCTTCTTTCT
39963149 TTTTTTTCTTCTTTCT
1 TTTTTTTCTTCTTTCT
39963165 TTTTTTTCTT-TTTCT
1 TTTTTTTCTTCTTTCT
39963180 T
1 T
39963181 CTTCGGGCTG
Statistics
Matches: 41, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
13 10 0.24
14 3 0.07
15 6 0.15
16 12 0.29
17 2 0.05
18 8 0.20
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTTCTTCTTTCT
Found at i:39963292 original size:9 final size:9
Alignment explanation
Indices: 39963257--39963315 Score: 50
Period size: 9 Copynumber: 6.6 Consensus size: 9
39963247 GGCGCGCCCC
*
39963257 CTTCTCTTC
1 CTTCTCTTT
*
39963266 CTCTCTCTCT
1 CT-TCTCTTT
*
39963276 CTTTTCTTT
1 CTTCTCTTT
39963285 CTTCTCTTT
1 CTTCTCTTT
*
39963294 TTTCT-TTT
1 CTTCTCTTT
39963302 CTT-TCTTCT
1 CTTCTCTT-T
39963311 CTTCT
1 CTTCT
39963316 TTCTTTTTGG
Statistics
Matches: 39, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
7 1 0.03
8 7 0.18
9 23 0.59
10 8 0.21
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (9 bp):
CTTCTCTTT
Found at i:39963299 original size:12 final size:13
Alignment explanation
Indices: 39963257--39963315 Score: 57
Period size: 14 Copynumber: 4.4 Consensus size: 13
39963247 GGCGCGCCCC
* *
39963257 CTTCTCTTCCTCT
1 CTTCTCTTTCTTT
39963270 CTCTCTCTTTTCTTT
1 CT-TCTC-TTTCTTT
39963285 CTTCTCTTT-TTT
1 CTTCTCTTTCTTT
*
39963297 CTTTTCTTTCTTCT
1 CTTCTCTTTCTT-T
39963311 CTTCT
1 CTTCT
39963316 TTCTTTTTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
12 11 0.29
13 7 0.18
14 13 0.34
15 7 0.18
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (13 bp):
CTTCTCTTTCTTT
Found at i:39963299 original size:21 final size:21
Alignment explanation
Indices: 39963261--39963322 Score: 88
Period size: 21 Copynumber: 2.9 Consensus size: 21
39963251 CGCCCCCTTC
*
39963261 TCTTCCTCTCTCTCTCTTTTCTT
1 TCTT-CTCT-TCTTTCTTTTCTT
*
39963284 TCTTCTCTTTTTTCTTTTCTT
1 TCTTCTCTTCTTTCTTTTCTT
39963305 TCTTCTCTTCTTTCTTTT
1 TCTTCTCTTCTTTCTTTT
39963323 TGGCTGCTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
21 28 0.78
22 4 0.11
23 4 0.11
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (21 bp):
TCTTCTCTTCTTTCTTTTCTT
Found at i:39963316 original size:12 final size:12
Alignment explanation
Indices: 39963279--39963320 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
39963269 TCTCTCTCTT
39963279 TTCTTTCTTCTC
1 TTCTTTCTTCTC
*
39963291 -T-TTT-TTCTT
1 TTCTTTCTTCTC
39963300 TTCTTTCTTCTC
1 TTCTTTCTTCTC
39963312 TTCTTTCTT
1 TTCTTTCTT
39963321 TTTGGCTGCT
Statistics
Matches: 25, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
9 4 0.16
10 4 0.16
11 4 0.16
12 13 0.52
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (12 bp):
TTCTTTCTTCTC
Found at i:39963321 original size:16 final size:16
Alignment explanation
Indices: 39963257--39963321 Score: 53
Period size: 16 Copynumber: 4.0 Consensus size: 16
39963247 GGCGCGCCCC
* *
39963257 CTTCTCTTC-CTCTCT
1 CTTCTCTTCTTTCTTT
*
39963272 CTCTCTTTTCTTTCTTCT
1 CT-TCTCTTCTTTCTT-T
*
39963290 CTT-TTTTCTTTTCTTT
1 CTTCTCTTC-TTTCTTT
39963306 CTTCTCTTCTTTCTTT
1 CTTCTCTTCTTTCTTT
39963322 TTGGCTGCTG
Statistics
Matches: 41, Mismatches: 4, Indels: 9
0.76 0.07 0.17
Matches are distributed among these distances:
15 2 0.05
16 22 0.54
17 14 0.34
18 3 0.07
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (16 bp):
CTTCTCTTCTTTCTTT
Found at i:39965678 original size:30 final size:31
Alignment explanation
Indices: 39965553--39965683 Score: 119
Period size: 30 Copynumber: 4.4 Consensus size: 31
39965543 ATTTGGGGTA
* * *
39965553 AAAATGTAATTTTAG-GAAAATAT-GGGGCC
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
* **
39965582 ACAATGTAATTTTT-AGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
* * **
39965612 AAAGTG-AAATTTTGAGAAAGTTTAGGGGTT
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
**
39965642 GGAATGTAATTTTTGA-AAAGTTTAGGGGCC
1 AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
39965672 AAAATGTAATTT
1 AAAATGTAATTT
39965684 ATGTTTTTTT
Statistics
Matches: 81, Mismatches: 17, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
29 24 0.30
30 49 0.60
31 8 0.10
ACGTcount: A:0.37, C:0.04, G:0.25, T:0.34
Consensus pattern (31 bp):
AAAATGTAATTTTTGAGAAAGTTTAGGGGCC
Found at i:39965922 original size:41 final size:41
Alignment explanation
Indices: 39965863--39966204 Score: 594
Period size: 41 Copynumber: 8.3 Consensus size: 41
39965853 TGATTACAGT
* *
39965863 CGCTAAAGACACGAGCATTAGCGGCGCTTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
* *
39965904 CACTAAAGACCCGAGCATTAGCGACGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
39965945 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
*
39965986 CACTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
*
39966027 TGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
39966068 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
**
39966109 CGCTAAAGACCTAAGCATTAGCGGCGCCTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
*
39966150 CGCTAAAGACCCGAGCATTAGCGGCGCTTTTTCAAAAACGC
1 CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
*
39966191 CGCTAAAGCCCCGA
1 CGCTAAAGACCCGA
39966205 AAGGTCAAAA
Statistics
Matches: 285, Mismatches: 16, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 285 1.00
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.18
Consensus pattern (41 bp):
CGCTAAAGACCCGAGCATTAGCGGCGCCTTTTCAAAAACGC
Found at i:39966286 original size:40 final size:40
Alignment explanation
Indices: 39966236--39966373 Score: 163
Period size: 40 Copynumber: 3.5 Consensus size: 40
39966226 TGGGCTTAGG
* *
39966236 TTTTTTGCGGCGTTTTTTGGAAAAACGCCGCTAATGCTC-A
1 TTTTTAGCGGCGTTTTTTGG-AAAGCGCCGCTAATGCTCGA
* **
39966276 TTTTTCGCGGCGCTTTCCTGG-AAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCG-TTTTTTGGAAAGCGCCGCTAATGCTCGA
* ** *
39966316 TCTTTAGCGGCGTTTTAAGTAAAGCGCCGCTAATGCTCGA
1 TTTTTAGCGGCGTTTTTTGGAAAGCGCCGCTAATGCTCGA
39966356 TTTTTAGCGGCGTTTTTT
1 TTTTTAGCGGCGTTTTTT
39966374 ATCCAAATGC
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
39 20 0.24
40 56 0.68
41 6 0.07
ACGTcount: A:0.17, C:0.22, G:0.25, T:0.36
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTTGGAAAGCGCCGCTAATGCTCGA
Found at i:39975904 original size:2 final size:2
Alignment explanation
Indices: 39975897--39975922 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
39975887 ACGAGAAATC
39975897 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
39975923 TGTTATTATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39977215 original size:2 final size:2
Alignment explanation
Indices: 39977208--39977235 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
39977198 NNNNNNNNTT
39977208 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
39977236 GGCATTTTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:39981059 original size:7 final size:7
Alignment explanation
Indices: 39981049--39981100 Score: 54
Period size: 7 Copynumber: 7.4 Consensus size: 7
39981039 TTTTTAATTT
39981049 TTTAATA
1 TTTAATA
39981056 TTTAAATA
1 TTT-AATA
39981064 TTTAATA
1 TTTAATA
*
39981071 TTATAATT
1 TT-TAATA
*
39981079 TTTTA-A
1 TTTAATA
39981085 TTTAA-A
1 TTTAATA
39981091 TTTAATA
1 TTTAATA
39981098 TTT
1 TTT
39981101 TTATTTAAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 6
0.79 0.08 0.12
Matches are distributed among these distances:
6 10 0.26
7 15 0.39
8 13 0.34
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (7 bp):
TTTAATA
Found at i:39981078 original size:31 final size:27
Alignment explanation
Indices: 39981043--39981099 Score: 78
Period size: 27 Copynumber: 2.0 Consensus size: 27
39981033 TAGATTTTTT
39981043 TAATTTTTTAATATTTAAATATTTAATATTA
1 TAATTTTTT-A-ATTT-AA-ATTTAATATTA
39981074 TAATTTTTTAATTTAAATTTAATATT
1 TAATTTTTTAATTTAAATTTAATATT
39981100 TTTATTTAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
27 10 0.38
28 2 0.08
29 4 0.15
30 1 0.04
31 9 0.35
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (27 bp):
TAATTTTTTAATTTAAATTTAATATTA
Found at i:40001166 original size:18 final size:19
Alignment explanation
Indices: 40001140--40001176 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
40001130 ATTATTAAAT
40001140 TTTAAT-AAAAATAGAAAA
1 TTTAATAAAAAATAGAAAA
*
40001158 TTTATTAAAAAATAGAAAA
1 TTTAATAAAAAATAGAAAA
40001177 AAATTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.65, C:0.00, G:0.05, T:0.30
Consensus pattern (19 bp):
TTTAATAAAAAATAGAAAA
Found at i:40001187 original size:19 final size:20
Alignment explanation
Indices: 40001144--40001188 Score: 58
Period size: 19 Copynumber: 2.4 Consensus size: 20
40001134 TTAAATTTTA
**
40001144 ATAAAAATAGAAAATTTATT
1 ATAAAAATAGAAAATAAATT
40001164 A-AAAAATAGAAAA-AAATT
1 ATAAAAATAGAAAATAAATT
40001182 ATAAAAA
1 ATAAAAA
40001189 CTTTAAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
18 4 0.18
19 17 0.77
20 1 0.05
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.24
Consensus pattern (20 bp):
ATAAAAATAGAAAATAAATT
Found at i:40001544 original size:22 final size:22
Alignment explanation
Indices: 40001516--40001562 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
40001506 CTTCTCTTTG
*
40001516 ATGAAAGTTTTATTTTCCCATA
1 ATGAAAGTTTTATTTTCCCAGA
40001538 ATGAAAGTTTTATTTTCCCAGA
1 ATGAAAGTTTTATTTTCCCAGA
40001560 ATG
1 ATG
40001563 TATCCTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.32, C:0.13, G:0.13, T:0.43
Consensus pattern (22 bp):
ATGAAAGTTTTATTTTCCCAGA
Found at i:40001901 original size:9 final size:9
Alignment explanation
Indices: 40001887--40001942 Score: 51
Period size: 9 Copynumber: 6.0 Consensus size: 9
40001877 TTTCGGTACG
40001887 ATAATTTTT
1 ATAATTTTT
40001896 ATAATTTTTT
1 ATAA-TTTTT
40001906 ATGAA-TTTT
1 AT-AATTTTT
*
40001915 ATATTTCTTT
1 ATAATT-TTT
* *
40001925 ACATTTTTT
1 ATAATTTTT
40001934 ATAATTTTT
1 ATAATTTTT
40001943 TTACGACTTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
8 1 0.03
9 21 0.54
10 15 0.38
11 2 0.05
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.66
Consensus pattern (9 bp):
ATAATTTTT
Found at i:40001912 original size:11 final size:10
Alignment explanation
Indices: 40001887--40002201 Score: 60
Period size: 10 Copynumber: 32.0 Consensus size: 10
40001877 TTTCGGTACG
40001887 ATAA-TTTTT
1 ATAATTTTTT
40001896 ATAATTTTTT
1 ATAATTTTTT
40001906 ATGAA--TTTT
1 AT-AATTTTTT
40001915 AT-ATTTCTTT
1 ATAATTT-TTT
*
40001925 A-CATTTTTT
1 ATAATTTTTT
40001934 ATAATTTTTT
1 ATAATTTTTT
****
40001944 -TACGACTTT
1 ATAATTTTTT
***
40001953 ATAAAAGTTT
1 ATAATTTTTT
40001963 ATAATTTTTT
1 ATAATTTTTT
* *
40001973 CT-ATATTTCT
1 ATAAT-TTTTT
*
40001983 ATATATTTTAT
1 ATA-ATTTTTT
*
40001994 AAATATATTTTT
1 ATA-AT-TTTTT
*
40002006 ATGATTTTTT
1 ATAATTTTTT
* *
40002016 GTAGA--ATTT
1 ATA-ATTTTTT
40002025 ATAATTTTTT
1 ATAATTTTTT
40002035 ATGAA--TTTT
1 AT-AATTTTTT
40002044 AT-ATTTCTTT
1 ATAATTT-TTT
*
40002054 A-CATTTTTT
1 ATAATTTTTT
40002063 ATAATTTTTT
1 ATAATTTTTT
****
40002073 -TACGACTTT
1 ATAATTTTTT
***
40002082 ATAAAAGTTT
1 ATAATTTTTT
40002092 ATAATTTTTT
1 ATAATTTTTT
* *
40002102 CT-ATATTTCT
1 ATAAT-TTTTT
*
40002112 ATATATTTTAT
1 ATA-ATTTTTT
*
40002123 AAATATATTTTT
1 ATA-AT-TTTTT
*
40002135 ATGATTTTTT
1 ATAATTTTTT
* *
40002145 GTAGA--ATTT
1 ATA-ATTTTTT
40002154 ATAATTTTTT
1 ATAATTTTTT
40002164 ATGAA--TTTT
1 AT-AATTTTTT
40002173 AT-ATTTCTTT
1 ATAATTT-TTT
*
40002183 A-CATTTTTT
1 ATAATTTTTT
40002192 ATAATTTTTT
1 ATAATTTTTT
40002202 TACGACTTTA
Statistics
Matches: 222, Mismatches: 49, Indels: 69
0.65 0.14 0.20
Matches are distributed among these distances:
7 3 0.01
8 2 0.01
9 61 0.27
10 112 0.50
11 30 0.14
12 14 0.06
ACGTcount: A:0.30, C:0.04, G:0.04, T:0.62
Consensus pattern (10 bp):
ATAATTTTTT
Found at i:40001916 original size:19 final size:19
Alignment explanation
Indices: 40001892--40001943 Score: 54
Period size: 19 Copynumber: 2.7 Consensus size: 19
40001882 GTACGATAAT
*
40001892 TTTTATAATTTTTTATGA-A
1 TTTTATAATTTTTTA-CATA
*
40001911 TTTTAT-ATTTCTTTACATT
1 TTTTATAATTT-TTTACATA
40001930 TTTTATAATTTTTT
1 TTTTATAATTTTTT
40001944 TACGACTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
18 5 0.18
19 19 0.68
20 4 0.14
ACGTcount: A:0.25, C:0.04, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTATAATTTTTTACATA
Found at i:40002032 original size:129 final size:129
Alignment explanation
Indices: 40001893--40002302 Score: 811
Period size: 129 Copynumber: 3.2 Consensus size: 129
40001883 TACGATAATT
40001893 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
1 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
40001958 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
66 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
40002022 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
1 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
40002087 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
66 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
40002151 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
1 TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
40002216 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
66 AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
*
40002280 TTTATAATTTTTTATGATTTTTA
1 TTTATAATTTTTTATGAATTTTA
40002303 ATATAAAATA
Statistics
Matches: 280, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
129 280 1.00
ACGTcount: A:0.30, C:0.04, G:0.05, T:0.61
Consensus pattern (129 bp):
TTTATAATTTTTTATGAATTTTATATTTCTTTACATTTTTTATAATTTTTTTACGACTTTATAAA
AGTTTATAATTTTTTCTATATTTCTATATATTTTATAAATATATTTTTATGATTTTTTGTAGAA
Found at i:40002049 original size:18 final size:20
Alignment explanation
Indices: 40002002--40002072 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 20
40001992 ATAAATATAT
* *
40002002 TTTTATGATTTTTTGTAGAA
1 TTTTATAATTTTTTATAGAA
40002022 -TTTATAATTTTTTAT-GAA
1 TTTTATAATTTTTTATAGAA
* **
40002040 TTTTAT-ATTTCTTTACA-TT
1 TTTTATAATTT-TTTATAGAA
40002059 TTTTATAATTTTTT
1 TTTTATAATTTTTT
40002073 TACGACTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
18 7 0.17
19 31 0.74
20 4 0.10
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTTTTATAGAA
Found at i:40002178 original size:18 final size:20
Alignment explanation
Indices: 40002131--40002201 Score: 60
Period size: 19 Copynumber: 3.7 Consensus size: 20
40002121 ATAAATATAT
* *
40002131 TTTTATGATTTTTTGTAGAA
1 TTTTATAATTTTTTATAGAA
40002151 -TTTATAATTTTTTAT-GAA
1 TTTTATAATTTTTTATAGAA
* **
40002169 TTTTAT-ATTTCTTTACA-TT
1 TTTTATAATTT-TTTATAGAA
40002188 TTTTATAATTTTTT
1 TTTTATAATTTTTT
40002202 TACGACTTTA
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
18 7 0.17
19 31 0.74
20 4 0.10
ACGTcount: A:0.25, C:0.03, G:0.06, T:0.66
Consensus pattern (20 bp):
TTTTATAATTTTTTATAGAA
Found at i:40002314 original size:29 final size:29
Alignment explanation
Indices: 40002252--40002332 Score: 69
Period size: 29 Copynumber: 2.8 Consensus size: 29
40002242 TATATTTTAT
**
40002252 AAATAT-A-TTTTTATGATTTTTTGTAGA
1 AAATATAATTTTTTATGATTTTTAATAGA
** *
40002279 ATTTATAATTTTTTATGATTTTTAATATA
1 AAATATAATTTTTTATGATTTTTAATAGA
40002308 AAATATAAATATTTTTTAT-ATTTTT
1 AAATAT--A-ATTTTTTATGATTTTT
40002333 TATTTTTTAT
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
27 4 0.10
28 1 0.02
29 21 0.50
31 7 0.17
32 9 0.21
ACGTcount: A:0.36, C:0.00, G:0.05, T:0.59
Consensus pattern (29 bp):
AAATATAATTTTTTATGATTTTTAATAGA
Found at i:40003233 original size:41 final size:41
Alignment explanation
Indices: 40003175--40003537 Score: 554
Period size: 41 Copynumber: 8.9 Consensus size: 41
40003165 GACTTTTCGG
*
40003175 GGGCTTTAGCGGTGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
40003216 GGGCTTTAGCGGCG-TTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
40003256 GGGATTTAGCGGCGTTTTTATTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * *
40003297 GGGATTTAGTGGCTTTTTTA-GTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATG-TAAGCGCCGCTAATGTTCT
40003338 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
40003379 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* *
40003420 GGGATTTAGCGGCGTTTTTATTTAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
* * *
40003461 GGGATTTAGTGGCTTTTTTA-GTAAAGCGCCGCTAATGTTCT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAATGTTCT
* *
40003502 GGGCTTTAGCGGCGTTTTTGT-TGATGCGCCGCTAAT
1 GGGCTTTAGCGGCGTTTTTATGT-AAGCGCCGCTAAT
40003538 TCGCAGGCCT
Statistics
Matches: 297, Mismatches: 20, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
40 40 0.13
41 256 0.86
42 1 0.00
ACGTcount: A:0.16, C:0.18, G:0.29, T:0.38
Consensus pattern (41 bp):
GGGCTTTAGCGGCGTTTTTATGTAAGCGCCGCTAATGTTCT
Found at i:40020145 original size:43 final size:43
Alignment explanation
Indices: 40020083--40020250 Score: 176
Period size: 43 Copynumber: 3.7 Consensus size: 43
40020073 NNNNNNNNNN
*
40020083 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTGTAGAAAG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTGTACAAAG
* *
40020126 TGCCGCTAAAGAACATGTTCTTTAGCTTCTTTAGCGGCGTTTGTGTATAAAG
1 CGCCGCTAAAGAACA-------T-G-TTCTTTAGCGGCGTTTGTGTACAAAG
** * *
40020178 CGCCGCTAAAGAACATGTTCTTTAGCGGCACTT-TCTACACAAA
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTGTACA-AAG
40020221 CGCCGCTAAAGAACATGTTCTTTAGCGGCG
1 CGCCGCTAAAGAACATGTTCTTTAGCGGCG
40020251 CTTTTAAAAA
Statistics
Matches: 106, Mismatches: 9, Indels: 20
0.79 0.07 0.15
Matches are distributed among these distances:
42 4 0.04
43 59 0.56
44 1 0.01
45 1 0.01
50 1 0.01
51 1 0.01
52 39 0.37
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29
Consensus pattern (43 bp):
CGCCGCTAAAGAACATGTTCTTTAGCGGCGTTTGTGTACAAAG
Found at i:40020183 original size:52 final size:52
Alignment explanation
Indices: 40020100--40020203 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
40020090 AAAGAACATG
*
40020100 TTCTTTAGCGGCGTTTGTGTAGAAAGTGCCGCTAAAGAACATGTTCTTTAGC
1 TTCTTTAGCGGCGTTTGTGTAGAAAGCGCCGCTAAAGAACATGTTCTTTAGC
*
40020152 TTCTTTAGCGGCGTTTGTGTATAAAGCGCCGCTAAAGAACATGTTCTTTAGC
1 TTCTTTAGCGGCGTTTGTGTAGAAAGCGCCGCTAAAGAACATGTTCTTTAGC
40020204 GGCACTTTCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 50 1.00
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (52 bp):
TTCTTTAGCGGCGTTTGTGTAGAAAGCGCCGCTAAAGAACATGTTCTTTAGC
Found at i:40026777 original size:31 final size:30
Alignment explanation
Indices: 40026739--40026796 Score: 82
Period size: 31 Copynumber: 1.9 Consensus size: 30
40026729 AACAATCCAA
*
40026739 TGACTTAACT-AAAAATATTTGAATAGTTCAG
1 TGACTTAA-TGAAAAAT-TTTGAACAGTTCAG
40026770 TGACTTAATGAAAAATTTTGAACAGTT
1 TGACTTAATGAAAAATTTTGAACAGTT
40026797 TAGTAACCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 11 0.44
31 14 0.56
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.36
Consensus pattern (30 bp):
TGACTTAATGAAAAATTTTGAACAGTTCAG
Found at i:40029116 original size:27 final size:26
Alignment explanation
Indices: 40029068--40029133 Score: 62
Period size: 27 Copynumber: 2.5 Consensus size: 26
40029058 TAGTTTTTTT
* *
40029068 TAAATTTTTTATAGTTTTTAAA-ATATA
1 TAAATTTTTGA-ACTTTTTAAATAT-TA
*
40029095 TAAATTTTTGAACTTTTATAAATATTT
1 TAAATTTTTGAACTTTT-TAAATATTA
*
40029122 TGAATTTTTGAA
1 TAAATTTTTGAA
40029134 AATTATTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
26 5 0.15
27 26 0.79
28 2 0.06
ACGTcount: A:0.38, C:0.02, G:0.06, T:0.55
Consensus pattern (26 bp):
TAAATTTTTGAACTTTTTAAATATTA
Found at i:40029121 original size:20 final size:21
Alignment explanation
Indices: 40029098--40029143 Score: 53
Period size: 19 Copynumber: 2.3 Consensus size: 21
40029088 AAATATATAA
40029098 ATTTTTGAACTTTT-ATAAA-T
1 ATTTTTGAACTTTTGA-AAATT
*
40029118 A-TTTTGAATTTTTGAAAATT
1 ATTTTTGAACTTTTGAAAATT
40029138 ATTTTT
1 ATTTTT
40029144 ATTTCTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
19 14 0.64
20 4 0.18
21 4 0.18
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (21 bp):
ATTTTTGAACTTTTGAAAATT
Found at i:40029136 original size:19 final size:19
Alignment explanation
Indices: 40029093--40029129 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
40029083 TTTTAAAATA
40029093 TATAAAT-TTTTGAACTTT
1 TATAAATATTTTGAACTTT
40029111 TATAAATATTTTGAA-TTT
1 TATAAATATTTTGAACTTT
40029129 T
1 T
40029130 TGAAAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (19 bp):
TATAAATATTTTGAACTTT
Found at i:40039272 original size:21 final size:23
Alignment explanation
Indices: 40039229--40039284 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
40039219 TATATGTAAT
40039229 AAATATAAAAAAACTAAATGATG
1 AAATATAAAAAAACTAAATGATG
*
40039252 AAAT-TAAAAAAATTAAA-GATG
1 AAATATAAAAAAACTAAATGATG
*
40039273 ACAATATTAAAA
1 A-AATATAAAAA
40039285 GATTGAAGTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 5 0.17
22 15 0.52
23 9 0.31
ACGTcount: A:0.66, C:0.04, G:0.07, T:0.23
Consensus pattern (23 bp):
AAATATAAAAAAACTAAATGATG
Found at i:40040187 original size:16 final size:16
Alignment explanation
Indices: 40040166--40040201 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
40040156 GTTGAACCGC
*
40040166 TTTTTATTTTTTAATA
1 TTTTTATTTTATAATA
*
40040182 TTTTTATTTTATAATC
1 TTTTTATTTTATAATA
40040198 TTTT
1 TTTT
40040202 AATAATTTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.22, C:0.03, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTATTTTATAATA
Found at i:40056052 original size:13 final size:13
Alignment explanation
Indices: 40056034--40056059 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40056024 TAACTGACAC
40056034 CCCCCCCCCCCCG
1 CCCCCCCCCCCCG
40056047 CCCCCCCCCCCCG
1 CCCCCCCCCCCCG
40056060 GCAAAACAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.92, G:0.08, T:0.00
Consensus pattern (13 bp):
CCCCCCCCCCCCG
Found at i:40058093 original size:13 final size:13
Alignment explanation
Indices: 40058075--40058100 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
40058065 AATGAGAGTA
40058075 AAGCTCCAGAACT
1 AAGCTCCAGAACT
40058088 AAGCTCCAGAACT
1 AAGCTCCAGAACT
40058101 GAGTTTGATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.31, G:0.15, T:0.15
Consensus pattern (13 bp):
AAGCTCCAGAACT
Found at i:40059937 original size:15 final size:15
Alignment explanation
Indices: 40059911--40059962 Score: 70
Period size: 15 Copynumber: 3.5 Consensus size: 15
40059901 AATTTGTTGA
40059911 ATTTTTAATATTTTT
1 ATTTTTAATATTTTT
*
40059926 ACTTTTT-TTATTTTT
1 A-TTTTTAATATTTTT
40059941 ATTTTTAATATTTTT
1 ATTTTTAATATTTTT
*
40059956 AATTTTA
1 ATTTTTA
40059963 TAGAATTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
14 5 0.16
15 22 0.69
16 5 0.16
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (15 bp):
ATTTTTAATATTTTT
Found at i:40059945 original size:21 final size:21
Alignment explanation
Indices: 40059919--40059963 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
40059909 GAATTTTTAA
* * *
40059919 TATTTTTACTTTTTTTATTTT
1 TATTTTTAATATTTTTAATTT
40059940 TATTTTTAATATTTTTAATTT
1 TATTTTTAATATTTTTAATTT
40059961 TAT
1 TAT
40059964 AGAATTATTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (21 bp):
TATTTTTAATATTTTTAATTT
Found at i:40060785 original size:21 final size:20
Alignment explanation
Indices: 40060761--40060801 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
40060751 TTACATGTGG
40060761 AAAATAATAAAATAAATAAAC
1 AAAATAATAAAATAAA-AAAC
*
40060782 AAAATAATAAATTAAAAAAC
1 AAAATAATAAAATAAAAAAC
40060802 TCTTAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (20 bp):
AAAATAATAAAATAAAAAAC
Found at i:40062445 original size:31 final size:29
Alignment explanation
Indices: 40062373--40062432 Score: 86
Period size: 29 Copynumber: 2.1 Consensus size: 29
40062363 TTGATCTCGG
* *
40062373 GTTACATTTTAGTCATTTATGTTTAAAAT
1 GTTACATTTTAGTCAATTACGTTTAAAAT
*
40062402 GTTACATTTTAGTCAATTACG-TTAACAT
1 GTTACATTTTAGTCAATTACGTTTAAAAT
40062430 GTT
1 GTT
40062433 GTAACATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
28 9 0.32
29 19 0.68
ACGTcount: A:0.30, C:0.10, G:0.12, T:0.48
Consensus pattern (29 bp):
GTTACATTTTAGTCAATTACGTTTAAAAT
Found at i:40064253 original size:7 final size:7
Alignment explanation
Indices: 40064241--40064266 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
40064231 TTATCTGATC
40064241 AGTGACA
1 AGTGACA
40064248 AGTGACA
1 AGTGACA
40064255 AGTGACA
1 AGTGACA
40064262 AGTGA
1 AGTGA
40064267 TAAATGTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.12, G:0.31, T:0.15
Consensus pattern (7 bp):
AGTGACA
Found at i:40068950 original size:132 final size:133
Alignment explanation
Indices: 40068712--40068976 Score: 523
Period size: 132 Copynumber: 2.0 Consensus size: 133
40068702 GGCGCCGTCG
40068712 CCGGCTACCGGCGCGGTGGTAGACGACCGGACCTTAGGCCGGAAATCAGATTGCCCCTAAAGGGC
1 CCGGCTACCGGCGCGGTGGTAGACGACCGGACCTTAGGCCGGAAATCAGATTGCCCCTAAAGGGC
40068777 TTGAGAGAGTTTTTTTTTGAGTTTTTTTAAAGAAAAGTGAATAAAATGAGAAATCTGAAAAAAAA
66 TTGAGAGAGTTTTTTTTTGAGTTTTTTTAAAGAAAAGTGAATAAAATGAGAAATCTGAAAAAAAA
40068842 AAT
131 AAT
40068845 CCGGCTACC-GCGCGGTGGTAGACGACCGGACCTTAGGCCGGAAATCAGATTGCCCCTAAAGGGC
1 CCGGCTACCGGCGCGGTGGTAGACGACCGGACCTTAGGCCGGAAATCAGATTGCCCCTAAAGGGC
40068909 TTGAGAGAGTTTTTTTTTGAGTTTTTTTAAAGAAAAGTGAATAAAATGAGAAATCTGAAAAAAAA
66 TTGAGAGAGTTTTTTTTTGAGTTTTTTTAAAGAAAAGTGAATAAAATGAGAAATCTGAAAAAAAA
40068974 AAT
131 AAT
40068977 TGTTTTTATA
Statistics
Matches: 132, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
132 123 0.93
133 9 0.07
ACGTcount: A:0.34, C:0.16, G:0.25, T:0.25
Consensus pattern (133 bp):
CCGGCTACCGGCGCGGTGGTAGACGACCGGACCTTAGGCCGGAAATCAGATTGCCCCTAAAGGGC
TTGAGAGAGTTTTTTTTTGAGTTTTTTTAAAGAAAAGTGAATAAAATGAGAAATCTGAAAAAAAA
AAT
Found at i:40073959 original size:2 final size:2
Alignment explanation
Indices: 40073952--40073976 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
40073942 CTGGGAGTTA
40073952 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
40073977 CATTTTCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:40076852 original size:4 final size:4
Alignment explanation
Indices: 40076843--40076872 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
40076833 CATTTATAAA
*
40076843 ATTT ATTT ATTT ATTC ATTT ATTT ATTT AT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATTT AT
40076873 CCTTTATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (4 bp):
ATTT
Found at i:40076864 original size:16 final size:15
Alignment explanation
Indices: 40076843--40076887 Score: 63
Period size: 16 Copynumber: 2.9 Consensus size: 15
40076833 CATTTATAAA
40076843 ATTTATTTATTTATTC
1 ATTTATTTATTTA-TC
40076859 ATTTATTTATTTATC
1 ATTTATTTATTTATC
*
40076874 CTTTATTATATTTA
1 ATTTATT-TATTTA
40076888 AAATTGATAT
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
15 8 0.30
16 19 0.70
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (15 bp):
ATTTATTTATTTATC
Found at i:40078762 original size:22 final size:24
Alignment explanation
Indices: 40078715--40078763 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 24
40078705 ACATGGATTG
*
40078715 ATTATTTAACTAGATGAAGTATAAT
1 ATTATTTAACTAGATGAAG-ACAAT
40078740 ATTATTTAACTAGAT-AA-ACAAT
1 ATTATTTAACTAGATGAAGACAAT
40078762 AT
1 AT
40078764 AATGGTTTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
24 2 0.09
25 15 0.65
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (24 bp):
ATTATTTAACTAGATGAAGACAAT
Found at i:40085067 original size:216 final size:217
Alignment explanation
Indices: 40084816--40085248 Score: 859
Period size: 216 Copynumber: 2.0 Consensus size: 217
40084806 TTTTAATTAT
40084816 GAAGTAAAAATAAATATTTTATATTTTAAGTAGTGAAAATAACGTAAAAATATTCTATATTTTTA
1 GAAGTAAAAATAAATATTTTATATTTTAAGTAGTGAAAATAACGTAAAAATATTCTATATTTTTA
40084881 AAAAAAGTATTATATAAGAGTTCTTGATTCTCTTTTATTTAATTGAAAAACTATATTTATGTACT
66 AAAAAAGTATTATATAAGAGTTCTTGATTCTCTTTTATTTAATTGAAAAACTATATTTATGTACT
40084946 AATATTTATGAAAAAACCTTTAAAACCACCAAAATATAAAACAAAAGTCATTTTATCAAAATAAA
131 AATATTTATGAAAAAACCTTTAAAACCACCAAAATATAAAACAAAAGTCATTTTATCAAAATAAA
40085011 ATTTAAAAATATAATATTTAAA
196 ATTTAAAAATATAATATTTAAA
40085033 GAAGTAAAAA-AAATATTTTATATTTTAAGTAGTGAAAATAACGTAAAAATATTCTATATTTTTA
1 GAAGTAAAAATAAATATTTTATATTTTAAGTAGTGAAAATAACGTAAAAATATTCTATATTTTTA
40085097 AAAAAAGTATTATATAAGAGTTCTTGATTCTCTTTTATTTAATTGAAAAACTATATTTATGTACT
66 AAAAAAGTATTATATAAGAGTTCTTGATTCTCTTTTATTTAATTGAAAAACTATATTTATGTACT
40085162 AATATTTATGAAAAAACCTTTAAAACCACCAAAATATAAAACAAAAGTCATTTTATCAAAATAAA
131 AATATTTATGAAAAAACCTTTAAAACCACCAAAATATAAAACAAAAGTCATTTTATCAAAATAAA
40085227 ATTTAAAAATATAATATTTAAA
196 ATTTAAAAATATAATATTTAAA
40085249 ATTAGCATGA
Statistics
Matches: 216, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
216 206 0.95
217 10 0.05
ACGTcount: A:0.49, C:0.07, G:0.06, T:0.37
Consensus pattern (217 bp):
GAAGTAAAAATAAATATTTTATATTTTAAGTAGTGAAAATAACGTAAAAATATTCTATATTTTTA
AAAAAAGTATTATATAAGAGTTCTTGATTCTCTTTTATTTAATTGAAAAACTATATTTATGTACT
AATATTTATGAAAAAACCTTTAAAACCACCAAAATATAAAACAAAAGTCATTTTATCAAAATAAA
ATTTAAAAATATAATATTTAAA
Found at i:40089612 original size:231 final size:225
Alignment explanation
Indices: 40089180--40089614 Score: 636
Period size: 231 Copynumber: 1.9 Consensus size: 225
40089170 TTATCCTTCA
* *
40089180 TATCAACATCATCAGGAATCACATCATTATCATAATGACCAGAAACGCCTCCGGCAGTGCCATCA
1 TATCAACATCATCAGGAATCACATCATTATCATAATGACCAGAAACGCCTCCGCCACTGCCATCA
* * * * *
40089245 TCATCACCCTCCTCATCTTCATCTTCACCATCAAAGTCATCGTCTTTACCAACATCATCATTATT
66 CCATCACCCGCCTCATCCTCATCTTCACCATCAAAGTCATCGTCTTCACCAACATCATCATCATT
** * *
40089310 ATTAACATTATCTTGATTAAAACCAGCATCCTCTGATAATCCGTTATCATTGCCATCTATATGAT
131 ATTAACATTATCTTGATTAAAACCAGCATCCTCTGATAATCCGGAATCATTGCCATCTATACGAC
40089375 ATTCTTCATTAGCTTCATCCTCATCCCCCT
196 ATTCTTCATTAGCTTCATCCTCATCCCCCT
* *
40089405 TATCAACATCATCAGGAATCACATCATTATCATAATGGCCAGAAATGCCTCCGCCACTGCCATCA
1 TATCAACATCATCAGGAATCACATCATTATCATAATGACCAGAAACGCCTCCGCCACTGCCATCA
* * *
40089470 CCATCACCATCAGCCTCCTCCTCATCTTCATCATCAAATTCATCGTCCTTACCACCAACATCATC
66 CCATCACC--C-GCCTCATCCTCATCTTCACCATCAAAGTCATCGT-CTT--CACCAACATCATC
* * * *
40089535 ATCATTATTAACTTTATCTTGATTAAAACCGGCATCCTCTGATACTCCGGAATCATTGCCATTTA
125 ATCATTATTAACATTATCTTGATTAAAACCAGCATCCTCTGATAATCCGGAATCATTGCCATCTA
40089600 TACGACATTCTTCAT
190 TACGACATTCTTCAT
40089615 CCTGTACCAA
Statistics
Matches: 184, Mismatches: 20, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
225 68 0.37
227 1 0.01
228 29 0.16
229 3 0.02
231 83 0.45
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.31
Consensus pattern (225 bp):
TATCAACATCATCAGGAATCACATCATTATCATAATGACCAGAAACGCCTCCGCCACTGCCATCA
CCATCACCCGCCTCATCCTCATCTTCACCATCAAAGTCATCGTCTTCACCAACATCATCATCATT
ATTAACATTATCTTGATTAAAACCAGCATCCTCTGATAATCCGGAATCATTGCCATCTATACGAC
ATTCTTCATTAGCTTCATCCTCATCCCCCT
Found at i:40090641 original size:32 final size:30
Alignment explanation
Indices: 40090566--40090644 Score: 86
Period size: 32 Copynumber: 2.5 Consensus size: 30
40090556 CTAAAATGTT
* * *
40090566 TATAATTAAATAAAGAATAAATTTTCTTATA
1 TATAATTAAATCAA-AATAAAATTTCGTATA
40090597 TATAATTGAAATCAAAATCAAAATTTCGTATA
1 TATAATT-AAATCAAAAT-AAAATTTCGTATA
*
40090629 TAATTATTAAATCAAA
1 T-ATAATTAAATCAAA
40090645 CTTCATGTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
31 10 0.24
32 26 0.63
33 5 0.12
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (30 bp):
TATAATTAAATCAAAATAAAATTTCGTATA
Found at i:40096658 original size:5 final size:6
Alignment explanation
Indices: 40096642--40096670 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
40096632 ATTGAGATTT
40096642 TAAAAA TAAAAA TAAAAA T-AAAA TAAAAA
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
40096671 GCCCCAGCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.23
6 17 0.77
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (6 bp):
TAAAAA
Found at i:40096664 original size:11 final size:12
Alignment explanation
Indices: 40096642--40096670 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
40096632 ATTGAGATTT
40096642 TAAAAATAAAAA
1 TAAAAATAAAAA
40096654 TAAAAAT-AAAA
1 TAAAAATAAAAA
40096665 TAAAAA
1 TAAAAA
40096671 GCCCCAGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 10 0.59
12 7 0.41
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (12 bp):
TAAAAATAAAAA
Found at i:40104973 original size:23 final size:23
Alignment explanation
Indices: 40104918--40104993 Score: 86
Period size: 23 Copynumber: 3.4 Consensus size: 23
40104908 AGACACTTTA
* *
40104918 TGTGTCATATTTCAAGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
40104941 TGTGTCGTATTTCAGGCACCTCG
1 TGTGTCGTATTTCAGGCACCTCG
* **
40104964 TGTGTTGTA--TCAGGCA-CTTA
1 TGTGTCGTATTTCAGGCACCTCG
40104984 TGTGTCGTAT
1 TGTGTCGTAT
40104994 ACTGATCAGG
Statistics
Matches: 46, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
20 10 0.22
21 7 0.15
23 29 0.63
ACGTcount: A:0.17, C:0.21, G:0.24, T:0.38
Consensus pattern (23 bp):
TGTGTCGTATTTCAGGCACCTCG
Found at i:40114456 original size:25 final size:25
Alignment explanation
Indices: 40114392--40114552 Score: 91
Period size: 25 Copynumber: 6.4 Consensus size: 25
40114382 GCATACTCTC
*
40114392 GAGCCATATAACGGGAAGCTCATAT
1 GAGCCATATAACGGGAAGCTCAGAT
*
40114417 GAGCCATGTAACGGGAAGCTCTAGAT
1 GAGCCATATAACGGGAAGCTC-AGAT
* * * * *
40114443 -AGTCATATATCGGGAAGTTTA-AGC
1 GAGCCATATAACGGGAAGCTCAGA-T
* *
40114467 GAGCCATAT--CGGGAAGCTCTGAA
1 GAGCCATATAACGGGAAGCTCAGAT
* * * *
40114490 GAGCCAT-TAATCAGGAAGCCCACAAA
1 GAGCCATATAA-CGGGAAGCTCA-GAT
* *
40114516 GAGCC-TTTAATCGGGAAGCTCACGAA
1 GAGCCATATAA-CGGGAAGCTCA-GAT
40114542 GAGCCATATAA
1 GAGCCATATAA
40114553 TAGGACACTC
Statistics
Matches: 105, Mismatches: 21, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
22 1 0.01
23 16 0.15
24 2 0.02
25 51 0.49
26 31 0.30
27 4 0.04
ACGTcount: A:0.35, C:0.20, G:0.25, T:0.19
Consensus pattern (25 bp):
GAGCCATATAACGGGAAGCTCAGAT
Found at i:40114519 original size:26 final size:26
Alignment explanation
Indices: 40114488--40114557 Score: 88
Period size: 26 Copynumber: 2.7 Consensus size: 26
40114478 GGAAGCTCTG
40114488 AAGAGCCATTAATCAGGAAGCCCACA
1 AAGAGCCATTAATCAGGAAGCCCACA
* * * *
40114514 AAGAGCCTTTAATCGGGAAGCTCACG
1 AAGAGCCATTAATCAGGAAGCCCACA
40114540 AAGAGCCATATAAT-AGGA
1 AAGAGCCAT-TAATCAGGA
40114558 CACTCATAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
26 33 0.89
27 4 0.11
ACGTcount: A:0.40, C:0.21, G:0.23, T:0.16
Consensus pattern (26 bp):
AAGAGCCATTAATCAGGAAGCCCACA
Found at i:40116295 original size:2 final size:2
Alignment explanation
Indices: 40116277--40116356 Score: 51
Period size: 2 Copynumber: 41.5 Consensus size: 2
40116267 AAAGGTATGA
* * * *
40116277 AT AT GT AT AT GT AT AT AT AT TT AT A- AT -T AT AT AC AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
40116316 GAT AG A- AT AT AT AT AC AT AT GT GT AT AT AT AT AT AT AT AT A
1 -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
40116357 GTTTTTGAAT
Statistics
Matches: 60, Mismatches: 13, Indels: 10
0.72 0.16 0.12
Matches are distributed among these distances:
1 4 0.07
2 54 0.90
3 2 0.03
ACGTcount: A:0.45, C:0.03, G:0.07, T:0.45
Consensus pattern (2 bp):
AT
Found at i:40116826 original size:41 final size:41
Alignment explanation
Indices: 40116781--40116930 Score: 203
Period size: 41 Copynumber: 3.6 Consensus size: 41
40116771 GACTTTACAT
* *
40116781 CTAGCGGGCTAAGTGCCGGTGATCTGAATCAAGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
*
40116822 CTAGCAGGCTAAGTGTCGGTGATCTGAATCAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
* * *
40116863 CTAGCAGGCTAAGTGCCTGTGAACTGAATTAGGCTATAAGC
1 CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
* *
40116904 CTAACAGG-TGAAGTGCCAGTGAATCTG
1 CTAGCAGGCT-AAGTGCCGGTG-ATCTG
40116931 TTTAAATTAA
Statistics
Matches: 97, Mismatches: 10, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
40 1 0.01
41 92 0.95
42 4 0.04
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.23
Consensus pattern (41 bp):
CTAGCAGGCTAAGTGCCGGTGATCTGAATCAGGCTATAAGC
Found at i:40119347 original size:58 final size:57
Alignment explanation
Indices: 40119285--40119407 Score: 156
Period size: 57 Copynumber: 2.1 Consensus size: 57
40119275 AAAGAAATGG
* * **
40119285 TGAAAATGGAGAAATGAGAAACATTTGGAAATGATTATGGTTTTCTCGAAAATGAAAA
1 TGAAAATGGAGAAATG-GAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAA
* * * * *
40119343 TGAAACTAGAGAAATGGAATCATTTGGAAATTAATGTGGTTTTCTCCAAAACCAAAA
1 TGAAAATGGAGAAATGGAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAA
40119400 TGAAAATG
1 TGAAAATG
40119408 ACATGTAAAT
Statistics
Matches: 54, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
57 40 0.74
58 14 0.26
ACGTcount: A:0.44, C:0.08, G:0.20, T:0.28
Consensus pattern (57 bp):
TGAAAATGGAGAAATGGAAACATTTGGAAATGAATATGGTTTTCTCCAAAACCAAAA
Found at i:40126732 original size:18 final size:18
Alignment explanation
Indices: 40126711--40126745 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
40126701 GAGACATTTG
*
40126711 AGAGAATTGATAGAAATT
1 AGAGAATTGATAAAAATT
40126729 AGAGAATTGATAAAAAT
1 AGAGAATTGATAAAAAT
40126746 GGATTTGAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.54, C:0.00, G:0.20, T:0.26
Consensus pattern (18 bp):
AGAGAATTGATAAAAATT
Found at i:40127334 original size:14 final size:17
Alignment explanation
Indices: 40127305--40127340 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
40127295 AAATATAAAA
40127305 AAAAATTAGAAATTTT-
1 AAAAATTAGAAATTTTC
40127321 AAAAA-TAG-AATTTTC
1 AAAAATTAGAAATTTTC
40127336 AAAAA
1 AAAAA
40127341 GTATAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 6 0.32
15 8 0.42
16 5 0.26
ACGTcount: A:0.61, C:0.03, G:0.06, T:0.31
Consensus pattern (17 bp):
AAAAATTAGAAATTTTC
Found at i:40133810 original size:4 final size:4
Alignment explanation
Indices: 40133801--40133840 Score: 64
Period size: 4 Copynumber: 10.0 Consensus size: 4
40133791 ATTCGTATGG
40133801 CTTT CTTT CTTT CTTT CTTT CTTT CTTT -TATT CTTT CTTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CT-TT CTTT CTTT
40133841 TAATACTTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
3 1 0.03
4 32 0.94
5 1 0.03
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (4 bp):
CTTT
Found at i:40140247 original size:10 final size:10
Alignment explanation
Indices: 40140229--40140276 Score: 55
Period size: 10 Copynumber: 4.9 Consensus size: 10
40140219 CCAATATCCA
*
40140229 ATATCAATTC
1 ATATAAATTC
40140239 ATATAAATTC
1 ATATAAATTC
*
40140249 A-ATTCAATTC
1 ATA-TAAATTC
40140259 ATATAAATTC
1 ATATAAATTC
40140269 A-ATAAATT
1 ATATAAATT
40140277 TATCACATAC
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
9 8 0.24
10 24 0.73
11 1 0.03
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.40
Consensus pattern (10 bp):
ATATAAATTC
Found at i:40140257 original size:20 final size:21
Alignment explanation
Indices: 40140227--40140272 Score: 85
Period size: 20 Copynumber: 2.2 Consensus size: 21
40140217 AACCAATATC
40140227 CAATATCAATTCATATAAATT
1 CAATATCAATTCATATAAATT
40140248 CAAT-TCAATTCATATAAATT
1 CAATATCAATTCATATAAATT
40140268 CAATA
1 CAATA
40140273 AATTTATCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
20 20 0.83
21 4 0.17
ACGTcount: A:0.48, C:0.15, G:0.00, T:0.37
Consensus pattern (21 bp):
CAATATCAATTCATATAAATT
Found at i:40150566 original size:21 final size:20
Alignment explanation
Indices: 40150542--40150583 Score: 52
Period size: 19 Copynumber: 2.1 Consensus size: 20
40150532 GGCTGGTGTA
40150542 TAAAATAATATTTATTTAA-AT
1 TAAAA-AATATTT-TTTAATAT
40150563 T-AAAAATATTTTTTAATAT
1 TAAAAAATATTTTTTAATAT
40150582 TA
1 TA
40150584 TTTCAAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 5
0.79 0.00 0.21
Matches are distributed among these distances:
18 5 0.26
19 10 0.53
20 3 0.16
21 1 0.05
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
TAAAAAATATTTTTTAATAT
Found at i:40150597 original size:29 final size:29
Alignment explanation
Indices: 40150547--40150614 Score: 77
Period size: 30 Copynumber: 2.3 Consensus size: 29
40150537 GTGTATAAAA
*
40150547 TAATATTTATTTAAATTAAAAAT-ATTTTT
1 TAATA-TTATTTAAATTAAAAATAATTTTG
40150576 TAATATTATTTCAAAATT-AAAATAATTTTG
1 TAATATTATTT--AAATTAAAAATAATTTTG
*
40150606 TAATTTTAT
1 TAATATTAT
40150615 GTGGAATATT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
28 6 0.18
29 10 0.29
30 18 0.53
ACGTcount: A:0.44, C:0.01, G:0.01, T:0.53
Consensus pattern (29 bp):
TAATATTATTTAAATTAAAAATAATTTTG
Found at i:40167762 original size:35 final size:35
Alignment explanation
Indices: 40167723--40167793 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
40167713 ACAATAAGAA
40167723 AGAATCAATTTCAAATATTAACTAGTTCGGGCTGT
1 AGAATCAATTTCAAATATTAACTAGTTCGGGCTGT
40167758 AGAATCAATTTCAAATATTAACTAGTTCGGGCTGT
1 AGAATCAATTTCAAATATTAACTAGTTCGGGCTGT
40167793 A
1 A
40167794 ATTCAACGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.35, C:0.14, G:0.17, T:0.34
Consensus pattern (35 bp):
AGAATCAATTTCAAATATTAACTAGTTCGGGCTGT
Found at i:40174995 original size:31 final size:31
Alignment explanation
Indices: 40174957--40175018 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
40174947 TAAAAACTGA
40174957 GTAAACTATTCCAGAGTCAATTATACAAGTT
1 GTAAACTATTCCAGAGTCAATTATACAAGTT
40174988 GTAAACTATTCCAGAGTCAATTATACAAGTT
1 GTAAACTATTCCAGAGTCAATTATACAAGTT
40175019 AACTTTAACA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (31 bp):
GTAAACTATTCCAGAGTCAATTATACAAGTT
Found at i:40178587 original size:133 final size:133
Alignment explanation
Indices: 40178411--40178653 Score: 389
Period size: 133 Copynumber: 1.8 Consensus size: 133
40178401 GATGGCTGAA
* * *
40178411 AGTGATGAGCTCAACATGTCCCATTACATATGCATGTTTAATGTAATGTAATTTGAAATCACAAA
1 AGTGATGAGCTCAACATGTCCCATTACATATGCATGTTCAATGTAAGGCAATTTGAAATCACAAA
*
40178476 AACAGCTTTTGGCTAGCCCTCCTCATCCTAGATGTAGATTTCTACGGTGGATGAAAGTGATGAGT
66 AACAGCTTTTGGCTAGCCCTCCTCATCCTAGATGAAGATTTCTACGGTGGATGAAAGTGATGAGT
40178541 GAG
131 GAG
* * * *
40178544 AGTGATGAGCTCAATATG-CCCTATTCCATATGCATGTTCAATGTAAGGCAATTTGGAATCCCAA
1 AGTGATGAGCTCAACATGTCCC-ATTACATATGCATGTTCAATGTAAGGCAATTTGAAATCACAA
*
40178608 AAACAGCTTTTGGCTAGCCTTCCTCATCCTAGATGAAGATTTCTAC
65 AAACAGCTTTTGGCTAGCCCTCCTCATCCTAGATGAAGATTTCTAC
40178654 AGTAGTTGCT
Statistics
Matches: 100, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
132 3 0.03
133 97 0.97
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (133 bp):
AGTGATGAGCTCAACATGTCCCATTACATATGCATGTTCAATGTAAGGCAATTTGAAATCACAAA
AACAGCTTTTGGCTAGCCCTCCTCATCCTAGATGAAGATTTCTACGGTGGATGAAAGTGATGAGT
GAG
Found at i:40180938 original size:24 final size:25
Alignment explanation
Indices: 40180911--40180961 Score: 61
Period size: 24 Copynumber: 2.1 Consensus size: 25
40180901 AAAATGTATG
*
40180911 TTTATATTAT-TAAAGT-ATTCATAT
1 TTTAT-TTATATAAAGTAATACATAT
*
40180935 TTTATTTATATATAGTAATACATAT
1 TTTATTTATATAAAGTAATACATAT
40180960 TT
1 TT
40180962 ATTATTGAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 4 0.17
24 10 0.43
25 9 0.39
ACGTcount: A:0.37, C:0.04, G:0.04, T:0.55
Consensus pattern (25 bp):
TTTATTTATATAAAGTAATACATAT
Found at i:40181427 original size:22 final size:22
Alignment explanation
Indices: 40181402--40181443 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
40181392 TAGTTTTTAC
* *
40181402 TAAATACATGTACCACATTAGA
1 TAAAAACACGTACCACATTAGA
*
40181424 TAAAAACACGTATCACATTA
1 TAAAAACACGTACCACATTA
40181444 AAAAAATGTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.19, G:0.07, T:0.26
Consensus pattern (22 bp):
TAAAAACACGTACCACATTAGA
Found at i:40193573 original size:2 final size:2
Alignment explanation
Indices: 40193566--40193590 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
40193556 CAAATTAATC
40193566 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
40193591 AAACCGTGAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:40204130 original size:22 final size:22
Alignment explanation
Indices: 40204105--40204169 Score: 64
Period size: 21 Copynumber: 3.0 Consensus size: 22
40204095 ATTTTAAAAT
40204105 TTATATTTATCAAATAATTTAA
1 TTATATTTATCAAATAATTTAA
*
40204127 TTATA-TT-CCAAATAATTTTAA
1 TTATATTTATCAAATAA-TTTAA
*
40204148 TTA-ATATATCAAACCTAATTTA
1 TTATATTTATCAAA--TAATTTA
40204170 TAATTTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
20 8 0.23
21 11 0.31
22 9 0.26
23 4 0.11
24 3 0.09
ACGTcount: A:0.45, C:0.09, G:0.00, T:0.46
Consensus pattern (22 bp):
TTATATTTATCAAATAATTTAA
Found at i:40206096 original size:13 final size:13
Alignment explanation
Indices: 40206078--40206102 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
40206068 GGTTCGGGTA
40206078 AAAATATAGGCCC
1 AAAATATAGGCCC
40206091 AAAATATAGGCC
1 AAAATATAGGCC
40206103 TGGGCAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.20, G:0.16, T:0.16
Consensus pattern (13 bp):
AAAATATAGGCCC
Found at i:40206219 original size:37 final size:37
Alignment explanation
Indices: 40206178--40206255 Score: 88
Period size: 36 Copynumber: 2.1 Consensus size: 37
40206168 TCCCGGCCCG
40206178 AATA-TAATAAATATATATTTTTAATTTTTAATTTT-AA
1 AATATTAATAAA-ATAT-TTTTTAATTTTTAATTTTGAA
** * *
40206215 AATATTTTTAAAATATTTTTTTATTTTTTATTTTGAA
1 AATATTAATAAAATATTTTTTAATTTTTAATTTTGAA
40206252 AATA
1 AATA
40206256 ATATTTTAAT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
36 16 0.46
37 14 0.40
38 5 0.14
ACGTcount: A:0.41, C:0.00, G:0.01, T:0.58
Consensus pattern (37 bp):
AATATTAATAAAATATTTTTTAATTTTTAATTTTGAA
Found at i:40206225 original size:11 final size:11
Alignment explanation
Indices: 40206209--40206234 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
40206199 TAATTTTTAA
40206209 TTTTAAAATAT
1 TTTTAAAATAT
40206220 TTTTAAAATAT
1 TTTTAAAATAT
40206231 TTTT
1 TTTT
40206235 TTATTTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:40206253 original size:26 final size:26
Alignment explanation
Indices: 40206217--40206274 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
40206207 AATTTTAAAA
* * * * *
40206217 TATTTTTAAAATATTTTTTTATTTTT
1 TATTTTGAAAATAATATTTTAATGTT
40206243 TATTTTGAAAATAATATTTTAATGTT
1 TATTTTGAAAATAATATTTTAATGTT
40206269 TATTTT
1 TATTTT
40206275 AAATGGGCCA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (26 bp):
TATTTTGAAAATAATATTTTAATGTT
Found at i:40206624 original size:30 final size:29
Alignment explanation
Indices: 40206553--40206640 Score: 88
Period size: 31 Copynumber: 2.9 Consensus size: 29
40206543 CTACTATCCG
*
40206553 AGGATATCTTTTAGGAATATATT-ATTATA
1 AGGATATCTTTTAGGAATAT-TTAAATATA
*
40206582 AGATATTATCTTTTAGGAATATTTAAATATA
1 AG-GA-TATCTTTTAGGAATATTTAAATATA
*
40206613 TTGGATATCTTTTAGGTATATATTTAAA
1 -AGGATATCTTTTAGG-A-ATATTTAAA
40206641 AATAGACCTG
Statistics
Matches: 49, Mismatches: 4, Indels: 9
0.79 0.06 0.15
Matches are distributed among these distances:
29 2 0.04
30 14 0.29
31 23 0.47
32 10 0.20
ACGTcount: A:0.38, C:0.03, G:0.12, T:0.47
Consensus pattern (29 bp):
AGGATATCTTTTAGGAATATTTAAATATA
Found at i:40207312 original size:31 final size:31
Alignment explanation
Indices: 40207269--40207327 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
40207259 TATACACCTC
* *
40207269 TATTTAGAAATATATTATTTATCTTTCCAAA
1 TATTTAGAAATATATTATATATATTTCCAAA
40207300 TATTTATG-AATATATTATATATATTTCC
1 TATTTA-GAAATATATTATATATATTTCC
40207328 TATAAATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
31 24 0.96
32 1 0.04
ACGTcount: A:0.37, C:0.08, G:0.03, T:0.51
Consensus pattern (31 bp):
TATTTAGAAATATATTATATATATTTCCAAA
Found at i:40209646 original size:25 final size:24
Alignment explanation
Indices: 40209618--40209717 Score: 100
Period size: 22 Copynumber: 4.2 Consensus size: 24
40209608 TAGCGCGCTT
*
40209618 TCTGATTATTGGCACGTTAGTGCTC
1 TCTG-TTATTAGCACGTTAGTGCTC
* *
40209643 TCTGATTACTAGCACGTCAGTGCTC
1 TCTG-TTATTAGCACGTTAGTGCTC
* *
40209668 TCTG-T-TTAGCACATTTGTGCTC
1 TCTGTTATTAGCACGTTAGTGCTC
*
40209690 TCTG-TA-TAGCACTTTAGTGCTC
1 TCTGTTATTAGCACGTTAGTGCTC
40209712 TCTGTT
1 TCTGTT
40209718 TATTTGTGCA
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
22 36 0.56
23 2 0.03
25 26 0.41
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.41
Consensus pattern (24 bp):
TCTGTTATTAGCACGTTAGTGCTC
Found at i:40209687 original size:22 final size:22
Alignment explanation
Indices: 40209629--40209719 Score: 103
Period size: 22 Copynumber: 4.0 Consensus size: 22
40209619 CTGATTATTG
*
40209629 GCACGTTAGTGCTCTCTGATTACTA
1 GCACTTTAGTGCTCTCTG-TT--TA
* *
40209654 GCACGTCAGTGCTCTCTGTTTA
1 GCACTTTAGTGCTCTCTGTTTA
*
40209676 GCACATTT-GTGCTCTCTGTATA
1 GCAC-TTTAGTGCTCTCTGTTTA
40209698 GCACTTTAGTGCTCTCTGTTTA
1 GCACTTTAGTGCTCTCTGTTTA
40209720 TTTGTGCATA
Statistics
Matches: 59, Mismatches: 5, Indels: 7
0.83 0.07 0.10
Matches are distributed among these distances:
21 3 0.05
22 36 0.61
23 1 0.02
24 2 0.03
25 17 0.29
ACGTcount: A:0.16, C:0.24, G:0.20, T:0.40
Consensus pattern (22 bp):
GCACTTTAGTGCTCTCTGTTTA
Found at i:40213190 original size:15 final size:15
Alignment explanation
Indices: 40213170--40213202 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
40213160 ATGGGAACTC
*
40213170 TGGAATGTATGGTGG
1 TGGAATGTATGGCGG
40213185 TGGAATGTATGGCGG
1 TGGAATGTATGGCGG
40213200 TGG
1 TGG
40213203 CCTTGGTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.03, G:0.48, T:0.30
Consensus pattern (15 bp):
TGGAATGTATGGCGG
Found at i:40223081 original size:190 final size:190
Alignment explanation
Indices: 40222535--40223056 Score: 649
Period size: 198 Copynumber: 2.7 Consensus size: 190
40222525 TTATGTGTTC
* * * *
40222535 GGGATTTTGTTGCACTCTTTGCCCTTTGTGAAATTAAATCCCATTCTATATCAGTGGAAACTAAT
1 GGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTCCATTCTATACCA-TGGAAACTAAT
* *
40222600 TGTTATCTCCAACCTAGTACTTTATTAGCCTGTTCAAGATCCTTAAAGCATTCTTGATCTTATAT
65 TG-TATCTCCAACCTAGTACTTTATTAGCTTGTTCAAGA-ACTTAAAGCATTCTTGATCTTATAT
* *
40222665 AAATGGACTCTCTGGAATTTTAAAGGTTGAAACTACTCTGAATTTGCGGTTAGATTGGTATGCAA
128 AAA-GGACTCTCCGGAATTTTAAAGGTTGAAACTACTCTGAATTTGCGGTTA-ATTGCTAT---A
40222730 TAT
188 TAT
* *
40222733 GGAATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTGCATTCTATATCCATGGAAACTAAT
1 GGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTCCATTCTATA-CCATGGAAACTAAT
* * *
40222798 TGGTATCTCCAACCTAGTTCTTTATTAGTTTGTTCAAGAACCTTCAAGCATTCTTGATCTTATAT
65 T-GTATCTCCAACCTAGTACTTTATTAGCTTGTTCAAGAA-CTTAAAGCATTCTTGATCTTATAT
* * *
40222863 AAAGGACTGTCCGGAATTTTAGAGGTTGAAACTACT-TCGAATTTGTGGTT-A-TGCT-T-TAT
128 AAAGGACTCTCCGGAATTTTAAAGGTTGAAACTACTCT-GAATTTGCGGTTAATTGCTATATAT
* * *
40222922 GGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTTCATTCTGTAGCATGGAAACTAAAT
1 GGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTCCATTCTATACCATGGAAACT-AAT
* * * * *
40222987 TGTATCTCCAATCTATAGTAATTTATTAGCTTGTTCAAGAGACTTAAAGCATTGTTGATCATATG
65 TGTATCTCCAA-C-CTAGTACTTTATTAGCTTGTTCAAGA-ACTTAAAGCATTCTTGATCTTATA
40223052 TAAAG
127 TAAAG
40223057 CATTCACCAG
Statistics
Matches: 288, Mismatches: 28, Indels: 24
0.85 0.08 0.07
Matches are distributed among these distances:
188 20 0.07
189 55 0.19
190 46 0.16
191 1 0.00
193 1 0.00
194 3 0.01
195 1 0.00
196 1 0.00
197 41 0.14
198 116 0.40
199 3 0.01
ACGTcount: A:0.27, C:0.16, G:0.17, T:0.40
Consensus pattern (190 bp):
GGGATTTTGTTGCACTCTTTGCCCTTTTTGAAATTGAATTCCATTCTATACCATGGAAACTAATT
GTATCTCCAACCTAGTACTTTATTAGCTTGTTCAAGAACTTAAAGCATTCTTGATCTTATATAAA
GGACTCTCCGGAATTTTAAAGGTTGAAACTACTCTGAATTTGCGGTTAATTGCTATATAT
Found at i:40232179 original size:2 final size:2
Alignment explanation
Indices: 40232174--40232220 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
40232164 GCACGAGAGA
40232174 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
40232216 AT AT A
1 AT AT A
40232221 GTAAATATAC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:40232897 original size:20 final size:20
Alignment explanation
Indices: 40232846--40232902 Score: 53
Period size: 20 Copynumber: 2.8 Consensus size: 20
40232836 ATATTTATAT
* *
40232846 TTTTAAAAATTTTAAATTTTA
1 TTTT-AAAATTTTTATTTTTA
*
40232867 TTTCT-ATATTTTTATTTTTA
1 TTT-TAAAATTTTTATTTTTA
*
40232887 TTTTAAAATTTATATT
1 TTTTAAAATTTTTATT
40232903 CAACTGTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 1 0.03
20 24 0.83
21 3 0.10
22 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (20 bp):
TTTTAAAATTTTTATTTTTA
Done.