genome.fa.s4.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  127  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40875189--40875226	20	1.9	19	89	5	58	39	18	7	34	1.80
40875209--40875260	15	3.6	14	79	7	59	36	17	5	40	1.73
40880941--40881133	51	3.8	50	80	6	210	32	25	15	26	1.95
40880945--40881131	101	1.8	101	85	5	261	33	25	14	26	1.95
40881887--40881955	5	13.8	5	77	6	68	36	21	8	33	1.84
40881887--40881954	20	3.4	19	87	4	91	35	22	8	33	1.85
40882123--40882197	7	10.0	7	71	23	55	45	14	0	40	1.45
40882130--40882179	17	2.9	18	85	8	61	46	18	0	36	1.49
40882122--40882184	23	2.7	24	83	9	78	47	15	0	36	1.46
40882707--40882822	49	2.4	49	89	0	169	18	27	25	29	1.98
40882797--40882908	49	2.3	49	89	3	172	30	31	22	16	1.95
40888647--40888839	51	3.8	51	80	6	196	23	18	27	30	1.97
40889005--40889077	37	1.9	38	86	13	107	42	2	23	31	1.68
40895683--40895781	52	1.9	52	91	0	162	49	8	1	41	1.39
40895907--40895972	14	4.7	14	73	0	60	57	4	15	22	1.56
40895899--40895957	28	2.1	28	87	0	82	55	3	16	23	1.56
40897505--40897559	22	2.4	24	73	14	62	56	1	1	40	1.21
40902750--40902785	16	2.2	16	90	0	54	33	11	5	50	1.61
40909100--40909269	85	2.0	85	89	0	259	32	19	14	33	1.91
40911204--40911326	40	3.1	40	85	3	160	34	21	23	21	1.97
40911378--40911569	41	4.7	41	89	1	287	22	23	25	28	1.99
40911837--40912077	133	1.8	132	86	4	351	27	0	28	42	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40911953--40911998	14	3.3	14	78	0	56	28	0	39	32	1.57
40912234--40912288	27	2.0	29	82	13	71	50	0	5	43	1.25
40913797--40914031	43	5.6	43	80	8	234	28	20	28	23	1.99
40913819--40914031	79	2.6	82	82	5	270	28	20	28	23	1.99
40914007--40914054	23	2.1	23	88	0	69	18	22	41	16	1.90
40914173--40914267	43	2.2	43	84	0	118	27	18	29	24	1.98
40914184--40914289	43	2.5	43	78	6	133	24	16	29	29	1.97
40914540--40914573	3	11.3	3	100	0	68	67	0	0	32	0.91
40915681--40915796	40	2.9	40	70	13	105	37	20	20	20	1.94
40916156--40916203	21	2.3	21	81	0	51	10	2	39	47	1.49
40916253--40916326	7	10.6	7	71	5	51	18	1	33	45	1.58
40916279--40916326	14	3.4	14	82	5	60	20	2	33	43	1.64
40916294--40916325	15	2.1	15	94	0	55	18	3	31	46	1.65
40916341--40916495	7	21.1	7	70	13	62	21	0	32	44	1.57
40916341--40916495	14	10.6	14	70	11	71	21	0	32	44	1.57
40916387--40916443	29	1.9	30	89	3	89	24	0	22	52	1.47
40916703--40916777	40	1.9	38	86	7	107	50	6	4	38	1.47
40917228--40917267	20	2.0	20	90	4	64	25	42	2	30	1.68
40917908--40917981	21	3.8	20	82	17	93	40	10	2	45	1.53
40917940--40917974	16	2.2	16	100	0	70	34	11	0	54	1.37
40917945--40917980	16	2.2	16	90	0	54	38	8	0	52	1.32
40918403--40918456	28	1.9	28	96	0	99	14	1	25	57	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40918459--40918532	35	2.1	35	97	0	139	25	13	17	43	1.86
40919664--40919988	9	34.8	9	71	14	196	44	19	0	35	1.57
40919674--40919895	56	4.0	56	92	0	365	45	19	0	34	1.54
40919674--40919951	112	2.5	111	85	5	366	44	19	0	34	1.54
40919881--40919995	56	2.1	54	90	3	176	43	19	1	35	1.61
40919798--40919982	85	2.2	85	91	2	291	44	18	0	36	1.54
40925503--40925559	21	2.8	21	86	5	82	40	15	40	3	1.65
40929339--40929405	35	1.9	35	96	0	125	35	17	7	38	1.78
40937869--40938049	40	4.5	40	92	0	308	30	23	19	25	1.98
40940253--40940733	143	3.4	142	84	4	592	26	22	20	30	1.98
40940906--40941250	89	3.9	90	84	2	412	24	22	24	28	1.99
40941066--40941220	44	3.5	44	71	13	138	19	25	25	29	1.98
40941023--40941176	45	3.5	44	71	12	125	21	26	22	29	1.99
40953946--40954002	3	19.0	3	100	0	114	33	0	0	66	0.92
40960711--40960741	16	2.0	15	93	6	53	83	0	16	0	0.64
40965457--40965524	26	2.7	26	97	2	129	70	0	25	4	1.05
40965468--40965516	21	2.5	19	80	9	53	71	0	26	2	0.97
40966638--40966683	15	3.1	15	87	3	67	65	8	2	23	1.32
40968467--40968717	51	5.2	49	66	21	136	30	15	17	36	1.91
40968463--40968767	95	3.2	94	83	3	376	29	15	18	36	1.92
40968481--40968984	44	11.0	44	70	13	272	29	16	18	36	1.92
40978774--40978829	3	18.7	3	89	7	87	67	0	1	30	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40978918--40978963	24	2.0	24	86	4	67	47	6	15	30	1.70
40981201--40981243	19	2.3	19	95	0	77	46	2	30	20	1.63
40996431--40996473	13	3.4	12	82	17	52	74	0	2	23	0.93
40996885--40997074	95	2.0	94	84	5	249	35	11	22	30	1.90
40997599--40997624	13	2.0	13	100	0	52	61	0	0	38	0.96
41001338--41001387	26	1.9	26	84	8	66	56	10	10	24	1.63
41002065--41002100	18	2.0	18	100	0	72	38	16	11	33	1.84
41002482--41002520	15	2.5	15	87	4	51	82	0	10	7	0.86
41003212--41003321	45	2.5	45	79	4	116	31	21	17	29	1.96
41003604--41003758	44	3.4	44	76	15	136	31	29	13	25	1.94
41014100--41014158	26	2.3	26	81	0	73	61	8	5	25	1.46
41015632--41015672	17	2.4	17	91	0	64	9	7	39	43	1.65
41015675--41015718	17	2.4	19	81	14	56	22	2	15	59	1.48
41016173--41016266	27	3.5	27	89	5	154	36	14	10	38	1.81
41018122--41018185	33	1.9	33	84	6	85	26	15	17	40	1.89
41018599--41018650	27	1.9	27	92	0	86	32	0	15	51	1.43
41020168--41020470	163	1.9	162	91	0	498	26	17	19	36	1.94
41022441--41022870	214	2.0	215	98	0	826	49	9	10	30	1.70
41024871--41025020	44	3.4	44	80	5	144	26	24	18	30	1.98
41025011--41025380	85	4.3	84	75	10	291	29	20	20	29	1.97
41024909--41025162	44	5.8	44	73	11	161	28	22	18	29	1.98
41025186--41025332	41	3.5	41	71	7	125	31	18	22	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41025225--41025377	44	3.5	44	73	5	150	29	18	21	30	1.97
41026479--41026628	44	3.4	44	80	5	144	26	24	18	30	1.98
41026517--41026770	44	5.8	44	73	11	161	28	22	18	29	1.98
41026833--41027028	44	4.5	44	79	4	220	29	18	20	31	1.97
41026789--41027028	128	1.9	129	88	0	365	29	19	20	30	1.97
41026873--41027029	85	1.8	85	93	0	269	28	19	21	31	1.97
41027038--41027543	90	5.6	90	92	1	827	30	24	16	29	1.96
41027038--41027533	45	11.0	45	86	7	695	30	24	16	28	1.96
41027668--41027769	44	2.3	45	86	5	136	24	24	27	23	2.00
41029017--41029073	12	4.5	12	81	14	62	1	17	0	80	0.79
41029020--41029085	24	2.7	25	79	13	75	6	13	0	80	0.89
41029017--41029074	20	3.0	20	85	5	75	1	17	0	81	0.78
41029030--41029082	20	2.6	19	80	11	61	5	13	0	81	0.86
41029012--41029074	26	2.4	27	76	15	78	1	20	0	77	0.85
41029261--41029285	12	2.1	12	100	0	50	0	24	0	76	0.80
41040711--41040772	6	10.7	6	93	6	110	67	16	0	16	1.23
41040711--41040764	28	1.9	28	100	0	108	66	16	0	16	1.25
41040704--41040806	34	3.1	33	81	5	100	72	10	3	12	1.24
41043289--41043953	99	6.7	100	86	2	750	31	22	21	24	1.98
41043345--41043704	50	7.3	50	68	6	239	33	22	20	23	1.97
41043689--41043829	51	2.8	49	70	4	120	29	19	22	28	1.98
41052046--41052121	3	25.0	3	97	2	143	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41052191--41052235	22	2.0	23	87	12	67	26	4	4	64	1.32
41058561--41059205	44	14.7	44	80	7	533	29	18	24	27	1.98
41058568--41059383	132	6.2	133	73	10	480	29	19	24	26	1.98
41059349--41059517	50	3.4	50	76	3	169	37	24	12	25	1.91
41060999--41061047	12	3.8	13	80	15	50	34	4	0	61	1.15
41061136--41061253	40	3.0	39	77	7	141	38	19	18	22	1.93
41061313--41061595	41	6.9	41	90	0	422	23	20	29	27	1.99
41064345--41064396	23	2.3	23	79	0	59	26	30	7	34	1.85
41065185--41065452	43	6.2	43	92	0	392	20	17	35	26	1.95
41065593--41065638	23	2.0	23	91	8	76	26	4	4	65	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163