Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 146 of 163
Found at i:48150788 original size:21 final size:22
Alignment explanation
Indices: 48150750--48150802 Score: 56
Period size: 21 Copynumber: 2.5 Consensus size: 22
48150740 ATCATCATTG
* *
48150750 TAAACATTAAATCATAAAC-TC
1 TAAACCTTAAACCATAAACATC
*
48150771 TAAACCTTAAACCCTAAACATC
1 TAAACCTTAAACCATAAACATC
*
48150793 -AAACCCTAAA
1 TAAACCTTAAA
48150803 ACAGTAACTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 25 0.93
22 2 0.07
ACGTcount: A:0.51, C:0.26, G:0.00, T:0.23
Consensus pattern (22 bp):
TAAACCTTAAACCATAAACATC
Found at i:48152860 original size:31 final size:32
Alignment explanation
Indices: 48152819--48152885 Score: 118
Period size: 31 Copynumber: 2.1 Consensus size: 32
48152809 AGACAACGAC
48152819 CATACACTTCCACACCATTAAACTCAACAAA-
1 CATACACTTCCACACCATTAAACTCAACAAAG
*
48152850 CATACTCTTCCACACCATTAAACTCAACAAAG
1 CATACACTTCCACACCATTAAACTCAACAAAG
48152882 CATA
1 CATA
48152886 ACGCCATGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
31 30 0.88
32 4 0.12
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.21
Consensus pattern (32 bp):
CATACACTTCCACACCATTAAACTCAACAAAG
Found at i:48159779 original size:26 final size:26
Alignment explanation
Indices: 48159743--48159794 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
48159733 GTTCCTAGTA
*
48159743 GTCTATCTGTGCAGATATATGTGTGT
1 GTCTATATGTGCAGATATATGTGTGT
*
48159769 GTCTATATGTGCAGATATGTGTGTGT
1 GTCTATATGTGCAGATATATGTGTGT
48159795 TTGCTGATTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.19, C:0.10, G:0.29, T:0.42
Consensus pattern (26 bp):
GTCTATATGTGCAGATATATGTGTGT
Found at i:48172142 original size:23 final size:22
Alignment explanation
Indices: 48172085--48172142 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 22
48172075 CTAATTAAAC
* *
48172085 TTATTA-TTATAAATTTATTGT
1 TTATTATTTTTAAATCTATTGT
*
48172106 TGA-TATTGTTTAAATCTATTGT
1 TTATTATT-TTTAAATCTATTGT
48172128 ATTATTATTTTTAAA
1 -TTATTATTTTTAAA
48172143 GGTTTCTTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 6
0.74 0.10 0.15
Matches are distributed among these distances:
20 2 0.07
21 3 0.10
22 12 0.41
23 8 0.28
24 4 0.14
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.59
Consensus pattern (22 bp):
TTATTATTTTTAAATCTATTGT
Found at i:48172196 original size:16 final size:16
Alignment explanation
Indices: 48172183--48172214 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
48172173 TGTATTATTC
48172183 TTCAAATTTATTATGT
1 TTCAAATTTATTATGT
*
48172199 TTCAAATTTGTTATGT
1 TTCAAATTTATTATGT
48172215 ATTATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.28, C:0.06, G:0.09, T:0.56
Consensus pattern (16 bp):
TTCAAATTTATTATGT
Found at i:48172253 original size:24 final size:24
Alignment explanation
Indices: 48172209--48172254 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
48172199 TTCAAATTTG
* *
48172209 TTATGTATTATTTTATATATTTTT
1 TTATGTATAATTTAATATATTTTT
48172233 TTATGTA-AATTTAATATTATTT
1 TTATGTATAATTTAATA-TATTT
48172255 ATACACAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 7 0.37
24 12 0.63
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (24 bp):
TTATGTATAATTTAATATATTTTT
Found at i:48185386 original size:26 final size:26
Alignment explanation
Indices: 48185357--48185411 Score: 110
Period size: 26 Copynumber: 2.1 Consensus size: 26
48185347 TTTATTTTGA
48185357 GATGGAATAGATTTTATGGTCAAGTG
1 GATGGAATAGATTTTATGGTCAAGTG
48185383 GATGGAATAGATTTTATGGTCAAGTG
1 GATGGAATAGATTTTATGGTCAAGTG
48185409 GAT
1 GAT
48185412 ATCTTTGAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.04, G:0.31, T:0.35
Consensus pattern (26 bp):
GATGGAATAGATTTTATGGTCAAGTG
Found at i:48186556 original size:17 final size:18
Alignment explanation
Indices: 48186534--48186577 Score: 63
Period size: 17 Copynumber: 2.4 Consensus size: 18
48186524 TTTATTTTAC
48186534 AATTATAAAACATTA-AA
1 AATTATAAAACATTATAA
*
48186551 AATTATAAAAGATTATTAA
1 AATTATAAAACATTA-TAA
48186570 AATTATAA
1 AATTATAA
48186578 TAATGAATAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 14 0.58
19 10 0.42
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.34
Consensus pattern (18 bp):
AATTATAAAACATTATAA
Found at i:48186943 original size:9 final size:9
Alignment explanation
Indices: 48186931--48186994 Score: 56
Period size: 10 Copynumber: 6.6 Consensus size: 9
48186921 ATAAATTATT
48186931 TTTTATAAA
1 TTTTATAAA
48186940 TTTTATAAAA
1 TTTTAT-AAA
*
48186950 TTTTATGAA
1 TTTTATAAA
*
48186959 TTTTAATTAA
1 TTTT-ATAAA
*
48186969 TTTCTATTACA
1 TTT-TA-TAAA
48186980 TTTTATAAA
1 TTTTATAAA
48186989 GTTTTA
1 -TTTTA
48186995 AAACAAATCT
Statistics
Matches: 45, Mismatches: 5, Indels: 9
0.76 0.08 0.15
Matches are distributed among these distances:
9 15 0.33
10 24 0.53
11 6 0.13
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (9 bp):
TTTTATAAA
Found at i:48186955 original size:19 final size:19
Alignment explanation
Indices: 48186931--48186994 Score: 58
Period size: 19 Copynumber: 3.3 Consensus size: 19
48186921 ATAAATTATT
48186931 TTTTATAAATTTTATAAAA
1 TTTTATAAATTTTATAAAA
* *
48186950 TTTTATGAATTTTA-ATTAA
1 TTTTATAAATTTTATA-AAA
* *
48186969 TTTCTATTACATTTTATAAAG
1 TTT-TA-TAAATTTTATAAAA
48186990 TTTTA
1 TTTTA
48186995 AAACAAATCT
Statistics
Matches: 35, Mismatches: 6, Indels: 7
0.73 0.12 0.15
Matches are distributed among these distances:
18 1 0.03
19 18 0.51
20 4 0.11
21 11 0.31
22 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.03, T:0.56
Consensus pattern (19 bp):
TTTTATAAATTTTATAAAA
Found at i:48187023 original size:21 final size:22
Alignment explanation
Indices: 48186994--48187037 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
48186984 ATAAAGTTTT
*
48186994 AAAACAAATCTA-ATTTTTATA
1 AAAAAAAATCTATATTTTTATA
* *
48187015 AAAAAAAATTTATGTTTTTATA
1 AAAAAAAATCTATATTTTTATA
48187037 A
1 A
48187038 TTCTAGAATG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 10 0.53
22 9 0.47
ACGTcount: A:0.52, C:0.05, G:0.02, T:0.41
Consensus pattern (22 bp):
AAAAAAAATCTATATTTTTATA
Found at i:48187451 original size:15 final size:16
Alignment explanation
Indices: 48187431--48187460 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
48187421 AACCAAAAAT
48187431 AAAAT-AATAGTCCAA
1 AAAATAAATAGTCCAA
48187446 AAAATAAATAGTCCA
1 AAAATAAATAGTCCA
48187461 TTTACAAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.60, C:0.13, G:0.07, T:0.20
Consensus pattern (16 bp):
AAAATAAATAGTCCAA
Found at i:48188529 original size:4 final size:4
Alignment explanation
Indices: 48188520--48188562 Score: 68
Period size: 4 Copynumber: 10.8 Consensus size: 4
48188510 TCTCCTACGT
* *
48188520 TATG TATG TATG TATG TAAG TATG TAAG TATG TATG TATG TAT
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TAT
48188563 TTTATTTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
4 35 1.00
ACGTcount: A:0.30, C:0.00, G:0.23, T:0.47
Consensus pattern (4 bp):
TATG
Found at i:48191571 original size:31 final size:32
Alignment explanation
Indices: 48191536--48191598 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 32
48191526 GGTTTAAGGG
*
48191536 TTAGGTGTTATGATTT-AGGGGTTAGGGGGAT
1 TTAGGGGTTATGATTTAAGGGGTTAGGGGGAT
* *
48191567 TTAGGGGTTATGCTTTAAGGGGTTATGGGGAT
1 TTAGGGGTTATGATTTAAGGGGTTAGGGGGAT
48191599 ATATTTAGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
31 14 0.50
32 14 0.50
ACGTcount: A:0.19, C:0.02, G:0.41, T:0.38
Consensus pattern (32 bp):
TTAGGGGTTATGATTTAAGGGGTTAGGGGGAT
Found at i:48201794 original size:21 final size:21
Alignment explanation
Indices: 48201764--48201811 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
48201754 CAACAACTTA
*
48201764 AAGCAAAGGCAGCAACAAGAG
1 AAGCAGAGGCAGCAACAAGAG
* * *
48201785 AAGCAGAGGCCGCAGCGAGAG
1 AAGCAGAGGCAGCAACAAGAG
48201806 AAGCAG
1 AAGCAG
48201812 CGATAGAAGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.21, G:0.35, T:0.00
Consensus pattern (21 bp):
AAGCAGAGGCAGCAACAAGAG
Found at i:48202492 original size:85 final size:84
Alignment explanation
Indices: 48202288--48202643 Score: 464
Period size: 85 Copynumber: 4.2 Consensus size: 84
48202278 GTTTTTAAAC
* * * * * *
48202288 AAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTTCAAAGTGCCGCTAAAGAACATGA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCG-TTTATTTCTAAGCGCCGCTAAAGAACATGA
* *
48202352 TCTTTAGCGGCGTTTTTGTCCT
64 TCTTTAGTGGCGTTTTT-TTCT
* *
48202374 AAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTTTAGCGCCGCTAAAGAACATGAT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTC-TAAGCGCCGCTAAAGAACATGAT
48202439 CTTTAGTGGC-TTTTATTTCT
65 CTTTAGTGGCGTTTT-TTTCT
* * *
48202459 AAGCGCCGCTAAAGAACATGCTCTTTAGTGGCGTTTATTTCTAAGCGCCGCTAAAGAACATGGTC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACATGATC
* *
48202524 TTTAGTGGTGTTTATTTTTT
66 TTTAGTGGCGTTT-TTTTCT
* *
48202544 TAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTCTTTCTAAGCGCCGCTAAAGAACATGATC
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACATGATC
48202609 TTTAGTGGCGTTTTTTTCTGT
66 TTTAGTGGCGTTTTTTTC--T
*
48202630 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
48202644 TTTACGACGT
Statistics
Matches: 237, Mismatches: 26, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
84 34 0.14
85 131 0.55
86 71 0.30
87 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (84 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTAAGCGCCGCTAAAGAACATGATC
TTTAGTGGCGTTTTTTTCT
Found at i:48202627 original size:42 final size:42
Alignment explanation
Indices: 48202288--48202643 Score: 446
Period size: 43 Copynumber: 8.3 Consensus size: 42
48202278 GTTTTTAAAC
* * * *
48202288 AAGCGCCGCTATAGAACATTA-CTTTTAGAGGCGTTTTCTTTCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGTGGCGTTTT-TTTCT
* * *
48202331 AAGTGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTGTCCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTT-TTCT
* * *
48202374 AAGCGTCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTCTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC-T
*
48202417 TAGCGCCGCTAAAGAACATGATCTTTAGTGGC-TTTTATTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTT-TTTCT
* *
48202459 AAGCGCCGCTAAAGAACATGCTCTTTAGTGGCGTTTATTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
* * *
48202501 AAGCGCCGCTAAAGAACATGGTCTTTAGTGGTGTTTATTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTT-TTTTCT
* * *
48202544 TAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTCTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
48202586 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCTGT
1 AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTC--T
*
48202630 AAGCGCCGCAAAAG
1 AAGCGCCGCTAAAG
48202644 TTTACGACGT
Statistics
Matches: 274, Mismatches: 31, Indels: 15
0.86 0.10 0.05
Matches are distributed among these distances:
42 118 0.43
43 141 0.51
44 15 0.05
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGTGGCGTTTTTTTCT
Found at i:48206134 original size:69 final size:69
Alignment explanation
Indices: 48206016--48207055 Score: 1879
Period size: 69 Copynumber: 15.1 Consensus size: 69
48206006 AGCATTTATA
* * * * * *
48206016 TATTTATTTATTATTCTTT--ATTTTTAAAATACCTAAATTTAATACTATTTATATATGTTTTAT
1 TATTTATTTATCATTCTTTGAATTTTT-AAATACTTAAATTTAATATTATTTATATTTATTTTAC
**
48206079 TTATT
65 CGATT
* * * ** * *
48206084 TACTTT-TTCATTATTCTTTTACCTTTTAAATATTTAAATATAATATTATTTATATTTATTTTAC
1 TA-TTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTAC
48206148 CGATT
65 CGATT
48206153 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206218 GATT
66 GATT
48206222 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206287 GATT
66 GATT
48206291 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206356 GATT
66 GATT
48206360 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206425 GATT
66 GATT
48206429 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206494 GATT
66 GATT
48206498 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206563 GATT
66 GATT
48206567 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206632 GATT
66 GATT
48206636 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206701 GATT
66 GATT
48206705 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206770 GATT
66 GATT
48206774 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206839 GATT
66 GATT
48206843 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206908 GATT
66 GATT
48206912 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
48206977 GATT
66 GATT
* *
48206981 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATCTTATC
1 TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
*
48207046 TATT
66 GATT
48207050 TATTTA
1 TATTTA
48207056 GTCATTTATT
Statistics
Matches: 946, Mismatches: 22, Indels: 7
0.97 0.02 0.01
Matches are distributed among these distances:
68 17 0.02
69 925 0.98
70 4 0.00
ACGTcount: A:0.32, C:0.07, G:0.03, T:0.58
Consensus pattern (69 bp):
TATTTATTTATCATTCTTTGAATTTTTAAATACTTAAATTTAATATTATTTATATTTATTTTACC
GATT
Found at i:48207052 original size:23 final size:26
Alignment explanation
Indices: 48207026--48207082 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 26
48207016 AAATTTAATA
48207026 TTATTTAT-ATTTA-TC-TTATCTAT
1 TTATTTATCATTTATTCGTTATCTAT
*
48207049 TTATTTAGTCATTTATTCGTTATTTAT
1 TTATTTA-TCATTTATTCGTTATCTAT
48207076 TT-TTTAT
1 TTATTTAT
48207083 TTATTTTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
23 7 0.24
24 1 0.03
25 6 0.21
26 6 0.21
27 9 0.31
ACGTcount: A:0.23, C:0.07, G:0.04, T:0.67
Consensus pattern (26 bp):
TTATTTATCATTTATTCGTTATCTAT
Found at i:48207055 original size:4 final size:4
Alignment explanation
Indices: 48207033--48207108 Score: 50
Period size: 4 Copynumber: 19.2 Consensus size: 4
48207023 ATATTATTTA
* * * **
48207033 TATT TATCT TATC TATT TATT TAGT CATT TA-T TCGT TATT TATT T-TT
1 TATT TAT-T TATT TATT TATT TATT TATT TATT TATT TATT TATT TATT
* *
48207080 TATT TATT T-TT TATA TATAC TATT TATT T
1 TATT TATT TATT TATT TAT-T TATT TATT T
48207109 TCATTTTATT
Statistics
Matches: 55, Mismatches: 12, Indels: 10
0.71 0.16 0.13
Matches are distributed among these distances:
3 8 0.15
4 40 0.73
5 7 0.13
ACGTcount: A:0.24, C:0.07, G:0.03, T:0.67
Consensus pattern (4 bp):
TATT
Found at i:48207088 original size:11 final size:11
Alignment explanation
Indices: 48207068--48207093 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
48207058 CATTTATTCG
48207068 TTATTTATTTT
1 TTATTTATTTT
48207079 TTATTTATTTT
1 TTATTTATTTT
48207090 TTAT
1 TTAT
48207094 ATATACTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (11 bp):
TTATTTATTTT
Found at i:48209332 original size:9 final size:9
Alignment explanation
Indices: 48209318--48209377 Score: 61
Period size: 9 Copynumber: 6.6 Consensus size: 9
48209308 GCAGTAGAGG
48209318 AAAAAAAAC
1 AAAAAAAAC
48209327 AAAAAAAAC
1 AAAAAAAAC
*
48209336 -AAAAAAAG
1 AAAAAAAAC
*
48209344 ATAAAAAAC
1 AAAAAAAAC
48209353 AAAAAAATA-
1 AAAAAAA-AC
48209362 ATAAAAAGAAC
1 A-AAAAA-AAC
48209373 AAAAA
1 AAAAA
48209378 TCAAAACAAA
Statistics
Matches: 42, Mismatches: 4, Indels: 9
0.76 0.07 0.16
Matches are distributed among these distances:
8 7 0.17
9 22 0.52
10 11 0.26
11 2 0.05
ACGTcount: A:0.85, C:0.07, G:0.03, T:0.05
Consensus pattern (9 bp):
AAAAAAAAC
Found at i:48209350 original size:26 final size:25
Alignment explanation
Indices: 48209320--48209403 Score: 82
Period size: 26 Copynumber: 3.2 Consensus size: 25
48209310 AGTAGAGGAA
48209320 AAAAAACAAAAAAAACAAAAAAAGAT
1 AAAAAACAAAAAAAA-AAAAAAAGAT
*
48209346 AAAAAACAAAAAAATAATAAAAAGA-
1 AAAAAACAAAAAAA-AAAAAAAAGAT
*
48209371 ACAAAAATCAAAACAAAGAACAAAAA-AT
1 A-AAAAA-CAAAA-AAA-AAAAAAAAGAT
48209399 AAAAA
1 AAAAA
48209404 CCTCTACTGG
Statistics
Matches: 50, Mismatches: 3, Indels: 9
0.81 0.05 0.15
Matches are distributed among these distances:
25 1 0.02
26 27 0.54
27 11 0.22
28 11 0.22
ACGTcount: A:0.82, C:0.08, G:0.04, T:0.06
Consensus pattern (25 bp):
AAAAAACAAAAAAAAAAAAAAAGAT
Found at i:48209378 original size:18 final size:18
Alignment explanation
Indices: 48209327--48209396 Score: 63
Period size: 19 Copynumber: 3.8 Consensus size: 18
48209317 GAAAAAAAAC
* *
48209327 AAAAAAAACAAAAAAAGAT
1 AAAAAGAACAAAAATA-AT
*
48209346 AAAAA-ACAAAAAAATAAT
1 AAAAAGA-ACAAAAATAAT
48209364 AAAAAGAACAAAAATCAA-
1 AAAAAGAACAAAAAT-AAT
48209382 AACAAAGAACAAAAA
1 AA-AAAGAACAAAAA
48209397 ATAAAAACCT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
18 17 0.39
19 27 0.61
ACGTcount: A:0.81, C:0.09, G:0.04, T:0.06
Consensus pattern (18 bp):
AAAAAGAACAAAAATAAT
Found at i:48209396 original size:20 final size:19
Alignment explanation
Indices: 48209354--48209402 Score: 66
Period size: 19 Copynumber: 2.6 Consensus size: 19
48209344 ATAAAAAACA
48209354 AAAAAATAATAA-AAAGAAC
1 AAAAAATAA-AACAAAGAAC
48209373 -AAAAATCAAAACAAAGAAC
1 AAAAAAT-AAAACAAAGAAC
48209392 AAAAAATAAAA
1 AAAAAATAAAA
48209403 ACCTCTACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
18 8 0.30
19 13 0.48
20 6 0.22
ACGTcount: A:0.80, C:0.08, G:0.04, T:0.08
Consensus pattern (19 bp):
AAAAAATAAAACAAAGAAC
Found at i:48209402 original size:19 final size:18
Alignment explanation
Indices: 48209318--48209403 Score: 72
Period size: 18 Copynumber: 4.7 Consensus size: 18
48209308 GCAGTAGAGG
*
48209318 AAAAAA-AACAAAAAAAAC
1 AAAAAATAA-AAAAAGAAC
*
48209336 AAAAAA-AGATAAAA-AAC
1 AAAAAATA-AAAAAAGAAC
48209353 AAAAAAATAATAAAAAGAAC
1 -AAAAAATAA-AAAAAGAAC
48209373 -AAAAATCAAAACAAAGAAC
1 AAAAAAT-AAAA-AAAGAAC
48209392 AAAAAATAAAAA
1 AAAAAATAAAAA
48209404 CCTCTACTGG
Statistics
Matches: 58, Mismatches: 2, Indels: 16
0.76 0.03 0.21
Matches are distributed among these distances:
17 3 0.05
18 27 0.47
19 19 0.33
20 9 0.16
ACGTcount: A:0.83, C:0.08, G:0.03, T:0.06
Consensus pattern (18 bp):
AAAAAATAAAAAAAGAAC
Found at i:48209403 original size:20 final size:20
Alignment explanation
Indices: 48209354--48209404 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
48209344 ATAAAAAACA
*
48209354 AAAAAATAATAA-AAAGAAC
1 AAAAAATAAAAACAAAGAAC
*
48209373 -AAAAATCAAAACAAAGAAC
1 AAAAAATAAAAACAAAGAAC
48209392 AAAAAATAAAAAC
1 AAAAAATAAAAAC
48209405 CTCTACTGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
18 9 0.33
19 7 0.26
20 11 0.41
ACGTcount: A:0.78, C:0.10, G:0.04, T:0.08
Consensus pattern (20 bp):
AAAAAATAAAAACAAAGAAC
Found at i:48211259 original size:235 final size:233
Alignment explanation
Indices: 48210904--48211357 Score: 746
Period size: 235 Copynumber: 1.9 Consensus size: 233
48210894 TTATTTTCCT
*
48210904 TAAAGTTACAGTGGAAGATTGAAGCTATAAATTGTAGATCTTATCTATTTGAAGTTGCAGTAGAG
1 TAAAGTTACAGTGGAAGATTGAAGCTATAAATTGTAGATCTTATCTATTTGAAATTGCAGTAGAG
* *
48210969 CAGATCATATCAAGCCTTATCTCCCTAAAGTTGCAACGGAGCAGATTGAAGACAGCAAATCTTAT
66 CAGATCATATCAAACCTTATCTCCCTAAAGTTACAACGGAGCAGATTGAAGACAGCAAATCTTAT
* * * * *
48211034 TTCCCTAATGTTGCAGTGGAATAGATTAAAGCTACAAATTATGACAGATCTTATCTTCTTAAAGT
131 TTCCCTAACGTTGCAGTGGAACAAATTAAAGCTACAAATTATGACAAATCTTATCTTCCTAAAGT
*
48211099 TGCGGTGGAGCAAATTGAAGCCACCAGTATTATTTCTC
196 TGCAGTGGAGCAAATTGAAGCCACCAGTATTATTTCTC
48211137 TAAAGTTACAGTGGAACAGATTGAAGCTATAAATTGTAGATCTTATCTATTTGAAATTGCAGTAG
1 TAAAGTTACAGTGG-A-AGATTGAAGCTATAAATTGTAGATCTTATCTATTTGAAATTGCAGTAG
* **
48211202 AGCAGATCATATCAAACCTTATCTCCCTGAAGTTACAGTGGAGCAGATTGAAGACAGCAAATCTT
64 AGCAGATCATATCAAACCTTATCTCCCTAAAGTTACAACGGAGCAGATTGAAGACAGCAAATCTT
** *
48211267 ATTTCCCTGGCGTTGCAGTGGAACAAATTAAAGCTACAAATTATGGCAAATCTTATCTTCCTAAA
129 ATTTCCCTAACGTTGCAGTGGAACAAATTAAAGCTACAAATTATGACAAATCTTATCTTCCTAAA
*
48211332 GTTGCAGTGGAGCAGATTGAAGCCAC
194 GTTGCAGTGGAGCAAATTGAAGCCAC
48211358 TAGCCTTATC
Statistics
Matches: 203, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
233 14 0.07
234 1 0.00
235 188 0.93
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.30
Consensus pattern (233 bp):
TAAAGTTACAGTGGAAGATTGAAGCTATAAATTGTAGATCTTATCTATTTGAAATTGCAGTAGAG
CAGATCATATCAAACCTTATCTCCCTAAAGTTACAACGGAGCAGATTGAAGACAGCAAATCTTAT
TTCCCTAACGTTGCAGTGGAACAAATTAAAGCTACAAATTATGACAAATCTTATCTTCCTAAAGT
TGCAGTGGAGCAAATTGAAGCCACCAGTATTATTTCTC
Found at i:48211414 original size:44 final size:44
Alignment explanation
Indices: 48211318--48211419 Score: 116
Period size: 44 Copynumber: 2.3 Consensus size: 44
48211308 TATGGCAAAT
* * * * * *
48211318 CTTATCTTCCTAAAGTTGCAGTGGAGCAGATTGAAGCCACTAGC
1 CTTATCTCCCTGAAGTTGCAGCGAAGCAGATCGAAGCCACAAGC
* *
48211362 CTTATCTCCCTGAAGTTGCAGCGAAGCAGATCGAAGCTACAAGT
1 CTTATCTCCCTGAAGTTGCAGCGAAGCAGATCGAAGCCACAAGC
48211406 CTCT-TCTCCCTGAA
1 CT-TATCTCCCTGAA
48211420 ATTACATTGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 48 0.98
45 1 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (44 bp):
CTTATCTCCCTGAAGTTGCAGCGAAGCAGATCGAAGCCACAAGC
Found at i:48213010 original size:20 final size:20
Alignment explanation
Indices: 48212970--48213013 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
48212960 CATTTCATTT
* *
48212970 TTTTAATATTTGATTATTTA
1 TTTTAATATTTGATAAATTA
*
48212990 TTTTAATATTTTATAAATTA
1 TTTTAATATTTGATAAATTA
48213010 TTTT
1 TTTT
48213014 TCTAAATATT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (20 bp):
TTTTAATATTTGATAAATTA
Found at i:48213846 original size:247 final size:247
Alignment explanation
Indices: 48213392--48213851 Score: 535
Period size: 247 Copynumber: 1.9 Consensus size: 247
48213382 AATTTCAAAT
* *
48213392 TTTTGACATCAAGACATTAATTAATTAATTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAACC
1 TTTTGACATCAAGACATTAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAACC
* **
48213457 CTTCCTTGTGCGTAACCGACTCTTGAATCCATTTATCTCAAATTTCATAGACCAAAATCATTGTT
66 CTTCCTCGTGCGTAACCGACTCTCCAATCCATTTATCTCAAATTTCATAGACCAAAATCATTGTT
* * * * *
48213522 TTAATAAAATCAAAATGTTTTATTAAAACGATCGAATTGCAAGGTGATCTGCTCACACCTCAAAA
131 TTAATAAAATCAAAATATTTTATTAAAACGATCGAATTGAAAGGTGATCCGATCACACCCCAAAA
*
48213587 AATGTCGGTGGCGACTCCTATTTTCATTTTTAAAGTTGATTCAAAAAAATGG
196 AAGGTCGGTGGCGACTCCTATTTTCATTTTTAAAGTTGATTCAAAAAAATGG
* * * *
48213639 TTTTGACA-CTAAGACTTTAATTAATCAACTAGGTATCGATTTTGGGTGT-TACGAGGGTGCTAA
1 TTTTGACATC-AAGACATTAATTAATCAACTAGGTACCAATTTTGGGCGTAT-CGAGGGTGCTAA
* * * **
48213702 TCCTTCCTCGTGCGTCACCGACTC-CCAATCC-TGTT-TC-CTTAATTTTGTAGACCACAAAT-A
64 CCCTTCCTCGTGCGTAACCGACTCTCCAATCCAT-TTATCTC-AAATTTCATAGACCA-AAATCA
* * * *
48213762 TTTGTTTTAGT-AAATCAAACTATTTT-TTAAAGCGATC-AATTTAAGAGGTGATCCGATCACAC
126 -TTGTTTTAATAAAATCAAAATATTTTATTAAAACGATCGAATTGAA-AGGTGATCCGATCACAC
*
48213824 CCCATAAAAAAGGATTGGTGGCGACTCC
189 CCC--AAAAAAGG-TCGGTGGCGACTCC
48213852 CGTTTTTGTT
Statistics
Matches: 178, Mismatches: 25, Indels: 20
0.80 0.11 0.09
Matches are distributed among these distances:
243 5 0.03
244 28 0.16
245 29 0.16
246 29 0.16
247 87 0.49
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (247 bp):
TTTTGACATCAAGACATTAATTAATCAACTAGGTACCAATTTTGGGCGTATCGAGGGTGCTAACC
CTTCCTCGTGCGTAACCGACTCTCCAATCCATTTATCTCAAATTTCATAGACCAAAATCATTGTT
TTAATAAAATCAAAATATTTTATTAAAACGATCGAATTGAAAGGTGATCCGATCACACCCCAAAA
AAGGTCGGTGGCGACTCCTATTTTCATTTTTAAAGTTGATTCAAAAAAATGG
Found at i:48214140 original size:26 final size:26
Alignment explanation
Indices: 48214110--48214160 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
48214100 CTTCCTTGTA
48214110 GTCTATATGTGCAGATATATGTGTGC
1 GTCTATATGTGCAGATATATGTGTGC
*
48214136 GTCTATATGTGCAGATATGTGTGTG
1 GTCTATATGTGCAGATATATGTGTG
48214161 TTATATATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.10, G:0.29, T:0.39
Consensus pattern (26 bp):
GTCTATATGTGCAGATATATGTGTGC
Found at i:48224349 original size:21 final size:19
Alignment explanation
Indices: 48224311--48224356 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 19
48224301 GATTTAAATA
48224311 AATTTATATTTTACATTAATT
1 AATTTATATTTTACATT-A-T
48224332 AATTTATATTTTGA-ATTAT
1 AATTTATATTTT-ACATTAT
48224351 AATTTA
1 AATTTA
48224357 GACGTAGTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 7 0.29
20 1 0.04
21 15 0.62
22 1 0.04
ACGTcount: A:0.39, C:0.02, G:0.02, T:0.57
Consensus pattern (19 bp):
AATTTATATTTTACATTAT
Found at i:48227862 original size:12 final size:12
Alignment explanation
Indices: 48227845--48227869 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
48227835 CCCATCTCTA
48227845 AGTATAAAATTT
1 AGTATAAAATTT
48227857 AGTATAAAATTT
1 AGTATAAAATTT
48227869 A
1 A
48227870 TCTTCATCTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (12 bp):
AGTATAAAATTT
Found at i:48228723 original size:33 final size:33
Alignment explanation
Indices: 48228678--48228929 Score: 477
Period size: 33 Copynumber: 7.6 Consensus size: 33
48228668 NNNNNNNNNN
*
48228678 AGGGTTAGGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228711 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228744 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228777 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228810 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228843 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
48228876 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
1 AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
* *
48228909 AGGGTTAGGGTTAGGATTTTT
1 AGGGTTATGGTTAGGGTTTTT
48228930 GTTAGGGTTT
Statistics
Matches: 216, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
33 216 1.00
ACGTcount: A:0.21, C:0.00, G:0.37, T:0.42
Consensus pattern (33 bp):
AGGGTTATGGTTAGGGTTTTTAAGTTAAGGGTT
Found at i:48228954 original size:53 final size:54
Alignment explanation
Indices: 48228891--48228993 Score: 181
Period size: 54 Copynumber: 1.9 Consensus size: 54
48228881 TATGGTTAGG
48228891 GTTTTTAAGTTAAGGGTTAGGG-TTAGGGTTAGGATTTTTGTTAGGGTTTTGGT
1 GTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTAGGATTTTTGTTAGGGTTTTGGT
* *
48228944 GTTTTTAAGTTAAGGTTTAGGGTTTAGGGTTAGGGTTTTTGTTAGGGTTT
1 GTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTAGGATTTTTGTTAGGGTTT
48228994 GTCAATTAAA
Statistics
Matches: 47, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
53 21 0.45
54 26 0.55
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.49
Consensus pattern (54 bp):
GTTTTTAAGTTAAGGGTTAGGGTTTAGGGTTAGGATTTTTGTTAGGGTTTTGGT
Found at i:48229249 original size:21 final size:21
Alignment explanation
Indices: 48229220--48229265 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
48229210 TCGTCCAGCT
* * * *
48229220 TCCGGCGGGGGTTGTGATTGC
1 TCCGACGGGGATTCTGATTCC
48229241 TCCGACGGGGATTCTGATTCC
1 TCCGACGGGGATTCTGATTCC
48229262 TCCG
1 TCCG
48229266 GTAGGGCATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.26, G:0.37, T:0.28
Consensus pattern (21 bp):
TCCGACGGGGATTCTGATTCC
Found at i:48229548 original size:18 final size:18
Alignment explanation
Indices: 48229522--48229564 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
48229512 GACTCGAAAA
* * *
48229522 AGGAAACATATAAGGGTT
1 AGGATACATAAAAGGGCT
48229540 AGGATACATAAAAGGGCT
1 AGGATACATAAAAGGGCT
48229558 AGGATAC
1 AGGATAC
48229565 GCACCTGACA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.44, C:0.09, G:0.28, T:0.19
Consensus pattern (18 bp):
AGGATACATAAAAGGGCT
Found at i:48230220 original size:7 final size:7
Alignment explanation
Indices: 48230210--48230235 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
48230200 TTATATACAT
48230210 AATACTA
1 AATACTA
48230217 AATACTA
1 AATACTA
48230224 AATACTA
1 AATACTA
48230231 AATAC
1 AATAC
48230236 CAATCGACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AATACTA
Found at i:48231168 original size:17 final size:17
Alignment explanation
Indices: 48231127--48231161 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
48231117 TTTTACGATT
48231127 TAAAATTTTTTTTTAAAA
1 TAAAA-TTTTTTTTAAAA
*
48231145 TGAAATTTTTTTTAAAA
1 TAAAATTTTTTTTAAAA
48231162 AATAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (17 bp):
TAAAATTTTTTTTAAAA
Found at i:48231267 original size:11 final size:11
Alignment explanation
Indices: 48231251--48231292 Score: 57
Period size: 11 Copynumber: 3.8 Consensus size: 11
48231241 ATTTGGAAGG
* *
48231251 AAATTGAGTGT
1 AAATTGAGAGC
48231262 AAATTGAGAGC
1 AAATTGAGAGC
*
48231273 AAATTGAGAGG
1 AAATTGAGAGC
48231284 AAATTGAGA
1 AAATTGAGA
48231293 AAATAATTGA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.24
Consensus pattern (11 bp):
AAATTGAGAGC
Found at i:48231277 original size:22 final size:22
Alignment explanation
Indices: 48231251--48231292 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
48231241 ATTTGGAAGG
* *
48231251 AAATTGAGTGTAAATTGAGAGC
1 AAATTGAGAGGAAATTGAGAGC
48231273 AAATTGAGAGGAAATTGAGA
1 AAATTGAGAGGAAATTGAGA
48231293 AAATAATTGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.02, G:0.29, T:0.24
Consensus pattern (22 bp):
AAATTGAGAGGAAATTGAGAGC
Found at i:48238221 original size:82 final size:82
Alignment explanation
Indices: 48238135--48238554 Score: 275
Period size: 82 Copynumber: 5.0 Consensus size: 82
48238125 AGGATTTTTT
** *
48238135 TTCTGCCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGTGATCTGCTCCACTACTACTTAG
1 TTCTGCCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCAATCTACTCCACTACTACTTAG
48238200 GGAGATAAGATCTGTGG
66 GGAGATAAGATCTGTGG
* * * *
48238217 TTCTGTCTGCTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAG
1 TTCTGCCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCAATCTACTCCACTACTACTTAG
48238282 GGAGATAAGATCTGTGG
66 GGAGATAAGATCTGTGG
* * * * * * *
48238299 TTTTAATCC-GCTCCACT-GTAACTTCAAGGAGATAGGA-TTG-GGTTTTTTC-GTCTACTCCAC
1 TTCT--GCCTGCTCCACTACT-GCTT-AGGGAGATAAGACTTGAGG------CAATCTACTCCAC
* * *
48238359 TACTGCTTAGGGAGATGAGAT-T-TGA
56 TACTACTTAGGGAGATAAGATCTGTGG
* *** * ** ** *
48238384 TGCAATCTACTCCACTACTGCTTAGGGAGATAAGATCTGTG-GTTTTAATCCGCTCCACT-GTAA
1 TTCTGCCTGCTCCACTACTGCTTAGGGAGATAAGA-CT-TGAG--GCAATCTACTCCACTACT-A
* * **
48238447 CTTCAAGGAGATAGGAT-TGGTTT
61 CTT-AGGGAGATAAGATCT-GTGG
* * * * * *
48238470 TTTTCGTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTA
1 TTCT-GCCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCAATCTACTCCACTACTACTTA
48238535 GGGAGATAAGATCTGTGG
65 GGGAGATAAGATCTGTGG
48238553 TT
1 TT
48238555 TTAATCCGTT
Statistics
Matches: 256, Mismatches: 56, Indels: 51
0.71 0.15 0.14
Matches are distributed among these distances:
82 81 0.32
83 52 0.20
84 47 0.18
85 8 0.03
86 7 0.03
87 60 0.23
88 1 0.00
ACGTcount: A:0.24, C:0.20, G:0.23, T:0.33
Consensus pattern (82 bp):
TTCTGCCTGCTCCACTACTGCTTAGGGAGATAAGACTTGAGGCAATCTACTCCACTACTACTTAG
GGAGATAAGATCTGTGG
Found at i:48238292 original size:40 final size:40
Alignment explanation
Indices: 48238144--48238676 Score: 290
Period size: 40 Copynumber: 12.8 Consensus size: 40
48238134 TTTCTGCCTG
* ** * *
48238144 CTCCACTACTGCTTAGGGAGATAAGACTTGAGGT-GATCTG
1 CTCCACTACTGCTTAGGGAGATAAGATTTG-TTTCAATCTA
* * ** *
48238184 CTCCACTACTACTTAGGGAGATAAGATCTGTGGTTCTGTCTG
1 CTCCACTACTGCTTAGGGAGATAAGAT-T-TGTTTCAATCTA
* *
48238226 CTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATTTGTTTCAATCTA
* **
48238266 CTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTACTGCTTAGGGAGATAAGAT-T-T-GTTTCAATCTA
* * * * * *
48238309 CTCCACT-GTAACTTCAAGGAGATAGGATTGGGTTTTTTC-GTCTA
1 CTCCACTACT-GCTT-AGGGAGATAAGA-T---TTGTTTCAATCTA
* * *
48238353 CTCCACTACTGCTTAGGGAGATGAGATTTGATGCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATTTGTTTCAATCTA
* **
48238393 CTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTACTGCTTAGGGAGATAAGAT-T-T-GTTTCAATCTA
* * * * * *
48238436 CTCCACT-GTAACTTCAAGGAGATAGGATTGGTTTTTTTC-GTCTA
1 CTCCACTACT-GCTT-AGGGAGATA--A--GATTTGTTTCAATCTA
* *
48238480 CTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTA
1 CTCCACTACTGCTTAGGGAGATAAGATTTGTTTCAATCTA
* **
48238520 CTCCACTACTGCTTAGGGAGATAAGATCTGTGGTTTTAATCCG
1 CTCCACTACTGCTTAGGGAGATAAGAT-T-T-GTTTCAATCTA
* * * * * ** *
48238563 TTCCACT-GTAACTTCAGGGAGATAGGATTGGTTTTTTTATCTG
1 CTCCACTACT-GCTT-AGGGAGATAAGATT--TGTTTCAATCTA
* * * *
48238606 CTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGA
1 CTCCACTACTGCTTAGGGAGATAAGATTTGTTTCAATCT-A
*
48238647 -TCC-CTACTGCTTAGGGAGATAAGATCTGTT
1 CTCCACTACTGCTTAGGGAGATAAGATTTGTT
48238677 ATTTTTAGTT
Statistics
Matches: 377, Mismatches: 84, Indels: 65
0.72 0.16 0.12
Matches are distributed among these distances:
39 34 0.09
40 129 0.34
41 8 0.02
42 51 0.14
43 82 0.22
44 57 0.15
45 9 0.02
46 3 0.01
47 2 0.01
48 2 0.01
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (40 bp):
CTCCACTACTGCTTAGGGAGATAAGATTTGTTTCAATCTA
Found at i:48238380 original size:127 final size:127
Alignment explanation
Indices: 48238221--48238675 Score: 790
Period size: 127 Copynumber: 3.6 Consensus size: 127
48238211 CTGTGGTTCT
*
48238221 GTCTGCTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
1 GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
48238286 ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGGTTTTTTC
66 ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGGTTTTTTC
*
48238348 GTCTACTCCACTACTGCTTAGGGAGATGAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
1 GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
*
48238413 ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGTTTTTTTC
66 ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGGTTTTTTC
48238475 GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
1 GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
* * *
48238540 ATAAGATCTGTGGTTTTAATCCGTTCCACTGTAACTTCAGGGAGATAGGATT-GGTTTTTTT
66 ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGGTTTTTTC
* * * *
48238601 ATCTGCTCCACTACTGCTTAGGGAGATAAGACTTGATGCGATCTGA-TCC-CTACTGCTTAGGGA
1 GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCT-ACTCCACTACTGCTTAGGGA
48238664 GATAAGATCTGT
65 GATAAGATCTGT
48238676 TATTTTTAGT
Statistics
Matches: 315, Mismatches: 12, Indels: 4
0.95 0.04 0.01
Matches are distributed among these distances:
125 26 0.08
126 50 0.16
127 239 0.76
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (127 bp):
GTCTACTCCACTACTGCTTAGGGAGATAAGATTTGATGCAATCTACTCCACTACTGCTTAGGGAG
ATAAGATCTGTGGTTTTAATCCGCTCCACTGTAACTTCAAGGAGATAGGATTGGGTTTTTTC
Found at i:48238502 original size:43 final size:43
Alignment explanation
Indices: 48238261--48238628 Score: 181
Period size: 44 Copynumber: 8.7 Consensus size: 43
48238251 ATTTGATGCA
* ** *
48238261 ATCTACTCCACTACTGCTTAGGGAGATAAGATCT-GTGGTTTTA
1 ATCTACTCCACTACTGCTTAGGGAGATAGGAT-TGGTTTTTTTC
** * * * *
48238304 ATCCGCTCCACT-GTAACTTCAAGGAGATAGGATTGGGTTTTTTC
1 ATCTACTCCACTACT-GCTT-AGGGAGATAGGATTGGTTTTTTTC
* * ** *
48238348 GTCTACTCCACTACTGCTTAGGGAGAT--GA--GATTTGATGC
1 ATCTACTCCACTACTGCTTAGGGAGATAGGATTGGTTTTTTTC
* ** *
48238387 AATCTACTCCACTACTGCTTAGGGAGATAAGATCT-GTGGTTTTA
1 -ATCTACTCCACTACTGCTTAGGGAGATAGGAT-TGGTTTTTTTC
** * * *
48238431 ATCCGCTCCACT-GTAACTTCAAGGAGATAGGATTGGTTTTTTTC
1 ATCTACTCCACTACT-GCTT-AGGGAGATAGGATTGGTTTTTTTC
* * ** *
48238475 GTCTACTCCACTACTGCTTAGGGAGATA--A--GATTTGATGC
1 ATCTACTCCACTACTGCTTAGGGAGATAGGATTGGTTTTTTTC
* ** *
48238514 AATCTACTCCACTACTGCTTAGGGAGATAAGATCT-GTGGTTTTA
1 -ATCTACTCCACTACTGCTTAGGGAGATAGGAT-TGGTTTTTTTC
*** * *
48238558 ATCCGTTCCACT-GTAACTTCAGGGAGATAGGATTGGTTTTTTT-
1 ATCTACTCCACTACT-GCTT-AGGGAGATAGGATTGGTTTTTTTC
*
48238601 ATCTGCTCCACTACTGCTTAGGGAGATA
1 ATCTACTCCACTACTGCTTAGGGAGATA
48238629 AGACTTGATG
Statistics
Matches: 233, Mismatches: 68, Indels: 49
0.67 0.19 0.14
Matches are distributed among these distances:
39 11 0.05
40 53 0.23
41 3 0.01
42 15 0.06
43 69 0.30
44 80 0.34
45 2 0.01
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (43 bp):
ATCTACTCCACTACTGCTTAGGGAGATAGGATTGGTTTTTTTC
Found at i:48238816 original size:50 final size:50
Alignment explanation
Indices: 48238756--48238925 Score: 144
Period size: 50 Copynumber: 3.4 Consensus size: 50
48238746 GCACCACCAA
* * *
48238756 GGAAGTAAGATTCGTCGTTGCGGCTTCAATCTTTTAAATTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGCGGCTTTAATCTTTTAAATTGCAATGTCGG
* * ** ** ** * * **
48238806 GGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGC-ATCGCCAT
1 GGAAGCAAGATTCGCCGTTGCGGCTTTAATCTTTTAAATTGCAAT-GTCGG
* * * *
48238856 GGAAGTAAGATTTGCCGTTACGGCTTTAATCTTTTTAATTGCAATGTCGG
1 GGAAGCAAGATTCGCCGTTGCGGCTTTAATCTTTTAAATTGCAATGTCGG
*
48238906 GGAAACAAGATTCGCCGTTG
1 GGAAGCAAGATTCGCCGTTG
48238926 TAGTTTTAAT
Statistics
Matches: 84, Mismatches: 34, Indels: 4
0.69 0.28 0.03
Matches are distributed among these distances:
49 2 0.02
50 80 0.95
51 2 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (50 bp):
GGAAGCAAGATTCGCCGTTGCGGCTTTAATCTTTTAAATTGCAATGTCGG
Found at i:48238880 original size:100 final size:100
Alignment explanation
Indices: 48238695--48238954 Score: 358
Period size: 100 Copynumber: 2.6 Consensus size: 100
48238685 TTTGATTAAC
* * * ** * *
48238695 TGCAATGTCGGGGAAGCAAGATTCGCTGTTGTAGCTTTAATCAGTTCTGCTGCACCACCAAGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAAGGAA
* *
48238760 GTAAGATTCGTCGTTGCGGCTTCAATCTTTTAAAT
66 GTAAGATTCGCCGTTACGGCTTCAATCTTTTAAAT
* * *
48238795 TGCAATGTCGGGGAAGCAAGATTCACCGTCGTAGCTTTAATCTGCTCCACTGCATCGCCATGGAA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAAGGAA
* * *
48238860 GTAAGATTTGCCGTTACGGCTTTAATCTTTTTAAT
66 GTAAGATTCGCCGTTACGGCTTCAATCTTTTAAAT
* * *
48238895 TGCAATGTCGGGGAAACAAGATTCGCCGTTGTAGTTTTAATCTGCTTCACTGCATCGCCA
1 TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCA
48238955 GAGAGATAAG
Statistics
Matches: 140, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
100 140 1.00
ACGTcount: A:0.24, C:0.22, G:0.23, T:0.31
Consensus pattern (100 bp):
TGCAATGTCGGGGAAGCAAGATTCGCCGTTGTAGCTTTAATCTGCTCCACTGCATCGCCAAGGAA
GTAAGATTCGCCGTTACGGCTTCAATCTTTTAAAT
Found at i:48239155 original size:88 final size:88
Alignment explanation
Indices: 48239016--48239361 Score: 342
Period size: 88 Copynumber: 3.9 Consensus size: 88
48239006 ATCTGTTTTC
* * ** * *
48239016 TTCGATCCACTTCGCCACCAGTATGGGAAGACAAGATCTGCATAT-TT-GATCTACTCCGCCACC
1 TTCGATCCACTTC-CTACCAATACAGGAAGACAAGATCTGC-TATCTTCGATCTACTTCACCACC
48239079 AATATGGGAAGACAAGATCTGCATT
64 AATATGGGAAGACAAGATCTGCATT
* * * * * *
48239104 TTCGATCTACTTCAC-GCCAATGCATGAAGACAAGATTTGCTTTCTTCGATCTACTTCACCACCA
1 TTCGATCCACTTC-CTACCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACCACCA
*
48239168 GTATGGGAAGACAAGATCTGCATCT
65 ATATGGGAAGACAAGATCTGCAT-T
* * * **
48239193 TT-GATCCACTTCCTACCAATATAGGAAGACAAGACCTGCTATCTTCAATCTACTTCACTGCCAA
1 TTCGATCCACTTCCTACCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACCACCAA
* * * *
48239257 CACGAGAAGACAAGATCTGCATC
66 TATGGGAAGACAAGATCTGCATT
* * * * * *
48239280 TTCGATCCACTTCCTACCAATATAGGAAGGCATGACCTGCTATCTTCGATCTACTTTA-CGCCAA
1 TTCGATCCACTTCCTACCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACCACCAA
***
48239344 TACATGAAGACAAGATCT
66 TATGGGAAGACAAGATCT
48239362 ACTTTAATAA
Statistics
Matches: 216, Mismatches: 37, Indels: 11
0.82 0.14 0.04
Matches are distributed among these distances:
86 2 0.01
87 43 0.20
88 168 0.78
89 3 0.01
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (88 bp):
TTCGATCCACTTCCTACCAATACAGGAAGACAAGATCTGCTATCTTCGATCTACTTCACCACCAA
TATGGGAAGACAAGATCTGCATT
Found at i:48239244 original size:132 final size:133
Alignment explanation
Indices: 48239003--48239292 Score: 399
Period size: 132 Copynumber: 2.2 Consensus size: 133
48238993 TCAGAGAGAT
* * *
48239003 AAGATCTGTTTTCTTCGATCCACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTTGATCT
1 AAGATCTGCTTTCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATATTTGATCC
* * * * **
48239068 ACTCCGCCACCAATATGGGAAGACAAGATCTGCATTTTCGATCTACTTCAC-GCCAATGC-ATGA
66 ACTCCGCCACCAATATAGGAAGACAAGACCTGCATCTTCAATCTACTTCACTGCCAACACGA-GA
48239131 AGAC
130 AGAC
* * *
48239135 AAGATTTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCC
1 AAGATCTGCTTTCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATATTTGATCC
* *
48239200 ACTTC-CTACCAATATAGGAAGACAAGACCTGCTATCTTCAATCTACTTCACTGCCAACACGAGA
66 ACTCCGCCACCAATATAGGAAGACAAGACCTGC-ATCTTCAATCTACTTCACTGCCAACACGAGA
48239264 AGAC
130 AGAC
*
48239268 AAGATCTGC-ATCTTCGATCCACTTC
1 AAGATCTGCTTTCTTCGATCCACTTC
48239293 CTACCAATAT
Statistics
Matches: 138, Mismatches: 17, Indels: 6
0.86 0.11 0.04
Matches are distributed among these distances:
131 24 0.17
132 93 0.67
133 20 0.14
134 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (133 bp):
AAGATCTGCTTTCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATATTTGATCC
ACTCCGCCACCAATATAGGAAGACAAGACCTGCATCTTCAATCTACTTCACTGCCAACACGAGAA
GAC
Found at i:48239325 original size:132 final size:132
Alignment explanation
Indices: 48239003--48239335 Score: 395
Period size: 132 Copynumber: 2.5 Consensus size: 132
48238993 TCAGAGAGAT
* * * *
48239003 AAGATCTGTTTTCTTCGATCCACTTCGCCACCAGTATGGGAAGACAAGATCTGCATATTTGATCT
1 AAGATCTGCTATCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCT
* * * * * **
48239068 ACTCCGCCACCAATATGGGAAGACAAGATCTGCATTTTCGATCTACTTCACGCCAATGCATGAAG
66 ACTTCGCCACCAATATAGGAAGACAAGACCTGCATCTTCAATCTACTTCACGCCAACACATGAAG
48239133 AC
131 AC
* * * *
48239135 AAGATTTGCTTTCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCC
1 AAGATCTGCTATCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCT
*
48239200 ACTTC-CTACCAATATAGGAAGACAAGACCTGCTATCTTCAATCTACTTCACTGCCAACACGA-G
66 ACTTCGCCACCAATATAGGAAGACAAGACCTGC-ATCTTCAATCTACTTCAC-GCCAACAC-ATG
48239263 AAGAC
128 AAGAC
* * * * * * *
48239268 AAGATCTGC-ATCTTCGATCCACTTC-CTACCAATATAGGAAGGCATGACCTGCTATCTTCGATC
1 AAGATCTGCTATCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGC-ATCTTTGATC
48239331 TACTT
65 TACTT
48239336 TACGCCAATA
Statistics
Matches: 172, Mismatches: 25, Indels: 8
0.84 0.12 0.04
Matches are distributed among these distances:
131 45 0.26
132 106 0.62
133 20 0.12
134 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.16, T:0.28
Consensus pattern (132 bp):
AAGATCTGCTATCTTCGATCCACTTCACCACCAGTATGGGAAGACAAGATCTGCATCTTTGATCT
ACTTCGCCACCAATATAGGAAGACAAGACCTGCATCTTCAATCTACTTCACGCCAACACATGAAG
AC
Found at i:48239344 original size:44 final size:43
Alignment explanation
Indices: 48239014--48239361 Score: 270
Period size: 44 Copynumber: 7.9 Consensus size: 43
48239004 AGATCTGTTT
* * * * *
48239014 TCTTCGATCCACTTCGCCACCAGTATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTC-ACGCCAATATAGGAAGACAAGATCTGCA
* * * * * *
48239058 TATTTGATCTACTCCGCCACCAATATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTC-ACGCCAATATAGGAAGACAAGATCTGCA
* ** * * *
48239102 TTTTCGATCTACTTCACGCCAATGCATGAAGACAAGATTTGCTT
1 TCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGC-A
* * *
48239146 TCTTCGATCTACTTCACCACCAGTATGGGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCA-CGCCAATATAGGAAGACAAGATCTGCA
* * * *
48239190 TCTTTGATCCACTTC-CTACCAATATAGGAAGACAAGACCTGCTA
1 TCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGATCTGC-A
* * *
48239234 TCTTCAATCTACTTCACTGCCAACA-CGAGAAGACAAGATCTGCA
1 TCTTCGATCTACTTCAC-GCCAATATAG-GAAGACAAGATCTGCA
* * * * *
48239278 TCTTCGATCCACTTC-CTACCAATATAGGAAGGCATGACCTGCTA
1 TCTTCGATCTACTTCAC-GCCAATATAGGAAGACAAGATCTGC-A
* * *
48239322 TCTTCGATCTACTTTACGCCAATACATGAAGACAAGATCT
1 TCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCT
48239362 ACTTTAATAA
Statistics
Matches: 242, Mismatches: 53, Indels: 18
0.77 0.17 0.06
Matches are distributed among these distances:
42 1 0.00
43 61 0.25
44 139 0.57
45 41 0.17
ACGTcount: A:0.30, C:0.27, G:0.16, T:0.27
Consensus pattern (43 bp):
TCTTCGATCTACTTCACGCCAATATAGGAAGACAAGATCTGCA
Found at i:48240030 original size:108 final size:108
Alignment explanation
Indices: 48239841--48240036 Score: 277
Period size: 108 Copynumber: 1.8 Consensus size: 108
48239831 GAAAAATGCT
* *
48239841 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTGTTGAGAGCAAAGCTCTAAACAAATAAAT
1 TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAAT
*
48239906 CAATCAAGATATCAAATTTTGCTGATATACGAGATGAATAAGA
66 CAATCAAGATAGCAAATTTTGCTGATATACGAGATGAATAAGA
* * * * * **
48239949 TGAAAAATATTATCACAATTGATAAGATGGAAA-TTTATTGAGAGCAAAGCTCTAAATGAACAAA
1 TGAAAAAGATTATCAAAATGGACAAAAT-GAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAA
*
48240013 TTAATCAAGATAGCAAATTTTGCT
65 TCAATCAAGATAGCAAATTTTGCT
48240037 AGAATACAAA
Statistics
Matches: 76, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
108 72 0.95
109 4 0.05
ACGTcount: A:0.47, C:0.10, G:0.15, T:0.28
Consensus pattern (108 bp):
TGAAAAAGATTATCAAAATGGACAAAATGAAATTTTATTGAGAGCAAAGCTCTAAACAAACAAAT
CAATCAAGATAGCAAATTTTGCTGATATACGAGATGAATAAGA
Found at i:48240392 original size:6 final size:6
Alignment explanation
Indices: 48240378--48240437 Score: 54
Period size: 6 Copynumber: 10.2 Consensus size: 6
48240368 TTAGCCTCTC
* *
48240378 CTTTTT CTTTGT CTTTTT CTTTTT CTTTTT -TGTTTT GTTTTT -TTGTTT
1 CTTTTT CTTTTT CTTTTT CTTTTT CTTTTT CT-TTTT CTTTTT CTT-TTT
*
48240426 C-GTTT CTTTTT C
1 CTTTTT CTTTTT C
48240438 AAGTGAAGTA
Statistics
Matches: 45, Mismatches: 4, Indels: 10
0.76 0.07 0.17
Matches are distributed among these distances:
5 7 0.16
6 37 0.82
7 1 0.02
ACGTcount: A:0.00, C:0.13, G:0.08, T:0.78
Consensus pattern (6 bp):
CTTTTT
Found at i:48240419 original size:13 final size:13
Alignment explanation
Indices: 48240385--48240435 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
48240375 CTCCTTTTTC
* *
48240385 TTTGTCTTTTTCT
1 TTTGTTTTTTTGT
48240398 TTT-TCTTTTTTGT
1 TTTGT-TTTTTTGT
48240411 TTTGTTTTTTTGT
1 TTTGTTTTTTTGT
*
48240424 TTCGTTTCTTTT
1 TTTGTTT-TTTT
48240436 TCAAGTGAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
12 1 0.03
13 26 0.81
14 5 0.16
ACGTcount: A:0.00, C:0.10, G:0.10, T:0.80
Consensus pattern (13 bp):
TTTGTTTTTTTGT
Found at i:48240909 original size:23 final size:22
Alignment explanation
Indices: 48240879--48240934 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 22
48240869 GGTTTTTTTG
48240879 TTTTATTTTTTGTTTTCGCATTT
1 TTTTATTTTTTGTTTTCGC-TTT
*
48240902 TTTTATTTTTTTGTTTTTGCTTT
1 TTTTA-TTTTTTGTTTTCGCTTT
*
48240925 TTTTGTTTTT
1 TTTTATTTTT
48240935 CTATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
22 5 0.17
23 12 0.40
24 13 0.43
ACGTcount: A:0.05, C:0.05, G:0.09, T:0.80
Consensus pattern (22 bp):
TTTTATTTTTTGTTTTCGCTTT
Found at i:48240916 original size:24 final size:23
Alignment explanation
Indices: 48240879--48240934 Score: 78
Period size: 23 Copynumber: 2.4 Consensus size: 23
48240869 GGTTTTTTTG
48240879 TTTTA-TTTTTTGTTTTCGCATTT
1 TTTTATTTTTTTGTTTTCGC-TTT
*
48240902 TTTTATTTTTTTGTTTTTGCTTT
1 TTTTATTTTTTTGTTTTCGCTTT
*
48240925 TTTTGTTTTT
1 TTTTATTTTT
48240935 CTATTTTTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
23 17 0.57
24 13 0.43
ACGTcount: A:0.05, C:0.05, G:0.09, T:0.80
Consensus pattern (23 bp):
TTTTATTTTTTTGTTTTCGCTTT
Found at i:48240918 original size:15 final size:15
Alignment explanation
Indices: 48240900--48240944 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
48240890 GTTTTCGCAT
48240900 TTTTTTATTTTTTTG
1 TTTTTTATTTTTTTG
**
48240915 TTTTTGCTTTTTTTG
1 TTTTTTATTTTTTTG
48240930 TTTTTCTATTTTTTT
1 TTTTT-TATTTTTTT
48240945 ACCTCCACTA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
15 18 0.72
16 7 0.28
ACGTcount: A:0.04, C:0.04, G:0.07, T:0.84
Consensus pattern (15 bp):
TTTTTTATTTTTTTG
Found at i:48245248 original size:41 final size:41
Alignment explanation
Indices: 48245190--48245445 Score: 397
Period size: 41 Copynumber: 6.2 Consensus size: 41
48245180 NNNNNNNNNN
* *
48245190 GCCGCTAAAGAACTGAGCATTAGCGGCGCTTTTACAAAAAC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
* * * * *
48245231 ACCGCTAAAGAACTGAGCATTAGTGGCGCTTCTCCAAAAAT
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
* *
48245272 G-CGCTAAAGATCTGAGCATTAGCGGCGCTTCTCCATAAAC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
48245312 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
48245353 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
**
48245394 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTTTTAAAAAC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGC-TTTTCCAAAAAC
48245436 GCCGCTAAAG
1 GCCGCTAAAG
48245446 CCTCGAAAGG
Statistics
Matches: 199, Mismatches: 14, Indels: 3
0.92 0.06 0.01
Matches are distributed among these distances:
40 36 0.18
41 143 0.72
42 20 0.10
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (41 bp):
GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAAC
Found at i:48245396 original size:82 final size:82
Alignment explanation
Indices: 48245190--48245445 Score: 397
Period size: 81 Copynumber: 3.1 Consensus size: 82
48245180 NNNNNNNNNN
* * * * *
48245190 GCCGCTAAAGAACTGAGCATTAGCGGCGCTTTTACAAAAACACCGCTAAAGAACTGAGCATTAGT
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGC
* *
48245255 GGCGCTTCTCCAAAAAT
66 GGCGCTTTTCCAAAAAC
* *
48245272 G-CGCTAAAGATCTGAGCATTAGCGGCGCTTCTCCATAAACGCCGCTAAAGATCTGAGCATTAGC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGC
48245336 GGCGCTTTTCCAAAAAC
66 GGCGCTTTTCCAAAAAC
48245353 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGC
1 GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGC
**
48245418 GGCGCTTTTTTTAAAAAC
66 GGCGC-TTTTCCAAAAAC
48245436 GCCGCTAAAG
1 GCCGCTAAAG
48245446 CCTCGAAAGG
Statistics
Matches: 159, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
81 72 0.45
82 67 0.42
83 20 0.13
ACGTcount: A:0.30, C:0.25, G:0.22, T:0.22
Consensus pattern (82 bp):
GCCGCTAAAGATCTGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAAGATCTGAGCATTAGC
GGCGCTTTTCCAAAAAC
Found at i:48245538 original size:40 final size:40
Alignment explanation
Indices: 48245483--48245619 Score: 154
Period size: 40 Copynumber: 3.4 Consensus size: 40
48245473 GGGCTTAGAG
* * *
48245483 TTTTTTGCGGCGTTTTTCGAAAAATCGCCACTAATGCTCA
1 TTTTTAGCGGCGTTTTTCGAAAAAGCGCCGCTAATGCTCA
48245523 TTTTTAGCGGCGTTTTT-GAAAAAGCGCCGCTAA-GCTCGA
1 TTTTTAGCGGCGTTTTTCGAAAAAGCGCCGCTAATGCTC-A
* * * *
48245562 TCTTTTAGCGGCGTTTTACG-TAAAGCACCGCTAATGCTTGA
1 T-TTTTAGCGGCGTTTTTCGAAAAAGCGCCGCTAATGC-TCA
*
48245603 TTTTTAGCGGCATTTTT
1 TTTTTAGCGGCGTTTTT
48245620 TGTCCAAACG
Statistics
Matches: 83, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
38 4 0.05
39 16 0.19
40 57 0.69
41 5 0.06
42 1 0.01
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.37
Consensus pattern (40 bp):
TTTTTAGCGGCGTTTTTCGAAAAAGCGCCGCTAATGCTCA
Found at i:48247482 original size:11 final size:11
Alignment explanation
Indices: 48247466--48247521 Score: 69
Period size: 11 Copynumber: 5.2 Consensus size: 11
48247456 TCTTATCTAA
48247466 AATTTCCTCTC
1 AATTTCCTCTC
* *
48247477 AATTTCTTCTA
1 AATTTCCTCTC
48247488 AATTTCCTCTC
1 AATTTCCTCTC
*
48247499 AATTTGCTCTC
1 AATTTCCTCTC
*
48247510 AAATTCCT-TC
1 AATTTCCTCTC
48247520 AA
1 AA
48247522 AATTTCTCTT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
10 4 0.11
11 34 0.89
ACGTcount: A:0.25, C:0.29, G:0.02, T:0.45
Consensus pattern (11 bp):
AATTTCCTCTC
Found at i:48247555 original size:51 final size:51
Alignment explanation
Indices: 48247497--48247594 Score: 144
Period size: 51 Copynumber: 1.9 Consensus size: 51
48247487 AAATTTCCTC
*
48247497 TCAATTTGCTCTCAAATTCCT-TCAAAATTTCTCTTGAATCCATATTTATTT
1 TCAATTTGCTCTCAAATTCCTCT-AAAATTTCTCTTAAATCCATATTTATTT
* * *
48247548 TCAATTTGCTCTCAAGTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTTAAATCCATATTT
48247595 TTAAATAATT
Statistics
Matches: 42, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.23, G:0.04, T:0.47
Consensus pattern (51 bp):
TCAATTTGCTCTCAAATTCCTCTAAAATTTCTCTTAAATCCATATTTATTT
Found at i:48269770 original size:21 final size:21
Alignment explanation
Indices: 48269746--48269803 Score: 80
Period size: 21 Copynumber: 2.8 Consensus size: 21
48269736 NNNAGGCTGC
48269746 AGCGAGGGAAGCAGAGGCTAA
1 AGCGAGGGAAGCAGAGGCTAA
* **
48269767 AGCGAGGGAAGCAAAGGCTGC
1 AGCGAGGGAAGCAGAGGCTAA
*
48269788 AGTGAGGGAAGCAGAG
1 AGCGAGGGAAGCAGAG
48269804 CAGCGTCAAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.36, C:0.14, G:0.45, T:0.05
Consensus pattern (21 bp):
AGCGAGGGAAGCAGAGGCTAA
Found at i:48270304 original size:43 final size:42
Alignment explanation
Indices: 48270150--48270306 Score: 154
Period size: 43 Copynumber: 3.7 Consensus size: 42
48270140 AGGTGTTGGC
*
48270150 CTTTAGTGGCGTTTCTGGTAAAAGCGCCGCTAAAGATAAGGGT
1 CTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAA-GGT
* * * * * *
48270193 CTTTCGCGGCGTTT-TCGGAAAAAGCACCCCTAAAGATCATGGT
1 CTTTAGTGGCGTTTGT-GGTAAAAGCGCCGCTAAAGAT-AAGGT
** *
48270236 CTTTAGTGGCGTTTGTGGGGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGG-T
* **
48270279 CTCTAGTGGCGTTTGTGGTCGAAGCGCC
1 CTTTAGTGGCGTTTGTGGTAAAAGCGCC
48270307 ACTATAGACC
Statistics
Matches: 92, Mismatches: 18, Indels: 8
0.78 0.15 0.07
Matches are distributed among these distances:
42 3 0.03
43 87 0.95
44 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.31, T:0.28
Consensus pattern (42 bp):
CTTTAGTGGCGTTTGTGGTAAAAGCGCCGCTAAAGATAAGGT
Found at i:48270538 original size:43 final size:43
Alignment explanation
Indices: 48270491--48270764 Score: 248
Period size: 43 Copynumber: 6.4 Consensus size: 43
48270481 GTTTTTGGTC
* *
48270491 AAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGGAA
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* * * **
48270534 AAAGCGCCACTAAAGATCATGGTCTTTAGCGGTGTTTGTGGGG
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* * * * * **
48270577 AAAGTGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTC
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* * * **
48270620 GAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGG
1 AAAGCGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGTGGAA
* * * **
48270663 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTC
1 AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
* * * *
48270706 GAAGCGCCGCTATAGATCAGGGTCTATT-GCGGGGTTTGAGAGAA
1 AAAGCGCCGCTAAAGATCAGGGTCT-TTAGCGGCGTTTGTG-GAA
48270750 AAA-CGCCGCTAAAGA
1 AAAGCGCCGCTAAAGA
48270765 CCAACACCTT
Statistics
Matches: 181, Mismatches: 46, Indels: 8
0.77 0.20 0.03
Matches are distributed among these distances:
42 2 0.01
43 172 0.95
44 7 0.04
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (43 bp):
AAAGCGCCGCTAAAGATCAGGGTCTTTAGCGGCGTTTGTGGAA
Found at i:48270616 original size:86 final size:86
Alignment explanation
Indices: 48270491--48270764 Score: 379
Period size: 86 Copynumber: 3.2 Consensus size: 86
48270481 GTTTTTGGTC
* * * *** * * *
48270491 AAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGGAAAAAGCGCCACTAAAGATCATGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGG
* *
48270556 TCT-TTAGCGGTGTTTGTGGGG
66 TCTATT-GCGGCGTTTGAGGGG
*
48270577 AAAGTGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGG
48270642 TCTATTGCGGCGTTTGAGGGG
66 TCTATTGCGGCGTTTGAGGGG
*
48270663 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGG
1 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGG
* * *
48270728 TCTATTGCGGGGTTTGAGAGA
66 TCTATTGCGGCGTTTGAGGGG
*
48270749 AAAACGCCGCTAAAGA
1 AAAGCGCCGCTAAAGA
48270765 CCAACACCTT
Statistics
Matches: 169, Mismatches: 18, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
86 167 0.99
87 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.32, T:0.26
Consensus pattern (86 bp):
AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGG
TCTATTGCGGCGTTTGAGGGG
Found at i:48270652 original size:129 final size:129
Alignment explanation
Indices: 48270471--48270703 Score: 308
Period size: 129 Copynumber: 1.8 Consensus size: 129
48270461 TCATTGGAGC
* * *
48270471 CTTTAGTGACGTTTTTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGTGGAAAA
1 CTTTAGTGACATTTGTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGAGGAAAA
*
48270536 AGCGCCACTAAAGATCATGG-TCTTTAGCGGTGTTTGTGGGGAAAGTGCCGCTAAAGATTAGGTT
66 AGCGCCACTAAAGATCA-GGTTCTTTAGCGGCGTTTGTGGGGAAAGTGCCGCTAAAGATTAGGTT
* * * * * **
48270600 CTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATT-GCGGCGTTTGAGGGGA
1 CTTTAGTGACATTTGTGGTCAAAGCGCCGCTAAAGATAAGGGTCT-TTAGCGGCATTTGAGGAAA
* * *
48270664 AAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGTGG
65 AAGCGCCACTAAAGATCAGGTTCTTTAGCGGCGTTTGTGG
48270704 TCGAAGCGCC
Statistics
Matches: 88, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
128 2 0.02
129 84 0.95
130 2 0.02
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (129 bp):
CTTTAGTGACATTTGTGGTCAAAGCGCCGCTAAAGATAAGGGTCTTTAGCGGCATTTGAGGAAAA
AGCGCCACTAAAGATCAGGTTCTTTAGCGGCGTTTGTGGGGAAAGTGCCGCTAAAGATTAGGTT
Found at i:48270776 original size:86 final size:86
Alignment explanation
Indices: 48270600--48270785 Score: 264
Period size: 86 Copynumber: 2.2 Consensus size: 86
48270590 AGATTAGGTT
* *
48270600 CTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTGAGGGGAA
1 CTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTGAGAGAAA
* ** ****
48270665 AGCGCCGCTAAAGATTAGGTT
66 AACGCCGCTAAAGACCAACAC
* *
48270686 CTTTAGTGGCGTTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATTGCGGGGTTTGAGAGAAA
1 CTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTGAGAGAAA
48270751 AACGCCGCTAAAGACCAACAC
66 AACGCCGCTAAAGACCAACAC
*
48270772 CTTTAGCGGCATTT
1 CTTTAGTGGCATTT
48270786 ATTTCTAAAA
Statistics
Matches: 87, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
86 87 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (86 bp):
CTTTAGTGGCATTTGTGGTCGAAGCGCCGCTATAGATCAGGGTCTATTGCGGCGTTTGAGAGAAA
AACGCCGCTAAAGACCAACAC
Found at i:48270894 original size:21 final size:18
Alignment explanation
Indices: 48270858--48270900 Score: 77
Period size: 18 Copynumber: 2.4 Consensus size: 18
48270848 TCAAAGCGCA
48270858 GCTAAAAGTATTTGCGGC
1 GCTAAAAGTATTTGCGGC
*
48270876 GCTAAAAGTATTTGCTGC
1 GCTAAAAGTATTTGCGGC
48270894 GCTAAAA
1 GCTAAAA
48270901 AGCGCTGCTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.16, G:0.23, T:0.28
Consensus pattern (18 bp):
GCTAAAAGTATTTGCGGC
Found at i:48270925 original size:22 final size:22
Alignment explanation
Indices: 48270897--48270939 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
48270887 TTGCTGCGCT
* *
48270897 AAAAAGCGCTGCTAAAGGCCTA
1 AAAAAGCGCCGCTAAAAGCCTA
48270919 AAAAAGCGCCGCTAAAAGCCT
1 AAAAAGCGCCGCTAAAAGCCT
48270940 GTTTTGGTGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.21, T:0.12
Consensus pattern (22 bp):
AAAAAGCGCCGCTAAAAGCCTA
Found at i:48271048 original size:21 final size:21
Alignment explanation
Indices: 48271001--48271042 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
48270991 ACAATTTTGT
*
48271001 AATTAAAGTGAAATTAAAACA
1 AATTAAAGTAAAATTAAAACA
48271022 AATTAAAGTAAAATTAAAACA
1 AATTAAAGTAAAATTAAAACA
48271043 CTTTAATTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.64, C:0.05, G:0.07, T:0.24
Consensus pattern (21 bp):
AATTAAAGTAAAATTAAAACA
Found at i:48271958 original size:24 final size:24
Alignment explanation
Indices: 48271894--48271975 Score: 69
Period size: 24 Copynumber: 3.4 Consensus size: 24
48271884 GTTACCAATT
48271894 TTTAGCTC-GAGAGAGCTTACCGATA
1 TTTAGCTCGGA-AGAGCTTACCG-TA
* *** *
48271919 TTCAGCTTACATGAGCTTACCGTA
1 TTTAGCTCGGAAGAGCTTACCGTA
*
48271943 TTTAGCTCGGAAGAGCTTACTGT-
1 TTTAGCTCGGAAGAGCTTACCGTA
48271966 TTATAGCTCG
1 TT-TAGCTCG
48271976 TAAAAGCATA
Statistics
Matches: 45, Mismatches: 10, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
23 2 0.04
24 26 0.58
25 16 0.36
26 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (24 bp):
TTTAGCTCGGAAGAGCTTACCGTA
Found at i:48282462 original size:18 final size:16
Alignment explanation
Indices: 48282430--48282470 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 16
48282420 TAACATTGAA
48282430 TGAAAGAAAGAAATAC
1 TGAAAGAAAGAAATAC
48282446 TGAAATGAAAGGAAATAC
1 TGAAA-GAAA-GAAATAC
48282464 TGAAAGA
1 TGAAAGA
48282471 CTGAATTACT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
16 5 0.22
17 6 0.26
18 12 0.52
ACGTcount: A:0.59, C:0.05, G:0.22, T:0.15
Consensus pattern (16 bp):
TGAAAGAAAGAAATAC
Found at i:48286154 original size:8 final size:8
Alignment explanation
Indices: 48286143--48286169 Score: 54
Period size: 8 Copynumber: 3.4 Consensus size: 8
48286133 TTTTTATTAA
48286143 TTTAAAAT
1 TTTAAAAT
48286151 TTTAAAAT
1 TTTAAAAT
48286159 TTTAAAAT
1 TTTAAAAT
48286167 TTT
1 TTT
48286170 GTCATTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 19 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (8 bp):
TTTAAAAT
Found at i:48286825 original size:11 final size:11
Alignment explanation
Indices: 48286805--48286842 Score: 58
Period size: 11 Copynumber: 3.5 Consensus size: 11
48286795 GGCCCGGTCC
48286805 ATATTAAATAT
1 ATATTAAATAT
*
48286816 ATATTTAATAT
1 ATATTAAATAT
*
48286827 ATATAAAATAT
1 ATATTAAATAT
48286838 ATATT
1 ATATT
48286843 TGATTAAAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (11 bp):
ATATTAAATAT
Found at i:48292469 original size:17 final size:17
Alignment explanation
Indices: 48292447--48292487 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
48292437 AATATAGACT
*
48292447 CAAAAAATGAGTTTGGA
1 CAAAAAATGAGTTTAGA
*
48292464 CAAAAAATGGGTTTAGA
1 CAAAAAATGAGTTTAGA
*
48292481 TAAAAAA
1 CAAAAAA
48292488 ATGAAGTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (17 bp):
CAAAAAATGAGTTTAGA
Found at i:48294112 original size:19 final size:19
Alignment explanation
Indices: 48294084--48294197 Score: 147
Period size: 19 Copynumber: 5.8 Consensus size: 19
48294074 AATTTTTGAG
*
48294084 GATATACAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
48294103 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
48294122 GATATATGCAATCTTAGATAT
1 G--ATATGCAATCTTAGATAT
48294143 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
48294162 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
48294181 GATTTTGTAATCTTAGA
1 GA-TATGCAATCTTAGA
48294198 GATTTAATTT
Statistics
Matches: 85, Mismatches: 7, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
19 55 0.65
20 12 0.14
21 18 0.21
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:48294137 original size:40 final size:39
Alignment explanation
Indices: 48294084--48294183 Score: 168
Period size: 40 Copynumber: 2.6 Consensus size: 39
48294074 AATTTTTGAG
48294084 GATATA-CAATCTTAGATATGATATGCAATCCTAGATAT
1 GATATATCAATCTTAGATATGATATGCAATCCTAGATAT
*
48294122 GATATATGCAATCTTAGATATGATATGCAATCTTAGATAT
1 GATATAT-CAATCTTAGATATGATATGCAATCCTAGATAT
48294162 GATATAT-AATCTTAGATATGAT
1 GATATATCAATCTTAGATATGAT
48294184 TTTGTAATCT
Statistics
Matches: 59, Mismatches: 1, Indels: 4
0.92 0.02 0.06
Matches are distributed among these distances:
38 21 0.36
40 38 0.64
ACGTcount: A:0.39, C:0.10, G:0.14, T:0.37
Consensus pattern (39 bp):
GATATATCAATCTTAGATATGATATGCAATCCTAGATAT
Found at i:48294178 original size:59 final size:58
Alignment explanation
Indices: 48294084--48294197 Score: 165
Period size: 59 Copynumber: 1.9 Consensus size: 58
48294074 AATTTTTGAG
*
48294084 GATATACAATCTTAGATATGATATGCAATCCTAGATATGATATATGCAATCTTAGATAT
1 GATATACAATCTTAGATATGATATACAATCCTAGATATGAT-TATGCAATCTTAGATAT
* * * * *
48294143 GATATGCAATCTTAGATATGATATATAATCTTAGATATGATTTTGTAATCTTAGA
1 GATATACAATCTTAGATATGATATACAATCCTAGATATGATTATGCAATCTTAGA
48294198 GATTTAATTT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
58 12 0.24
59 37 0.76
ACGTcount: A:0.38, C:0.10, G:0.14, T:0.39
Consensus pattern (58 bp):
GATATACAATCTTAGATATGATATACAATCCTAGATATGATTATGCAATCTTAGATAT
Found at i:48295193 original size:9 final size:9
Alignment explanation
Indices: 48295181--48295205 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
48295171 GATGATGTAT
48295181 TTATTATTG
1 TTATTATTG
48295190 TTATTATTG
1 TTATTATTG
48295199 TTATTAT
1 TTATTAT
48295206 AGCATTTGCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
TTATTATTG
Found at i:48306392 original size:24 final size:25
Alignment explanation
Indices: 48306356--48306409 Score: 67
Period size: 24 Copynumber: 2.2 Consensus size: 25
48306346 ATGTTATTGG
*
48306356 ATTATTGATTTAATATAAAT-ATATA
1 ATTATTGATTTAACATAAATAAT-TA
*
48306381 ATTATT-ATTTAACATATATAATTA
1 ATTATTGATTTAACATAAATAATTA
48306405 ATTAT
1 ATTAT
48306410 AATATTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 18 0.69
25 8 0.31
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.50
Consensus pattern (25 bp):
ATTATTGATTTAACATAAATAATTA
Found at i:48308835 original size:25 final size:26
Alignment explanation
Indices: 48308780--48308836 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 26
48308770 GAATGTATTG
*
48308780 TGTATTAAACGAATAAAACTAAATCAA
1 TGTATTAAAAGAATAAAACTAAA-CAA
48308807 -GTATTAAAAGAAT-AAACTGAAA-AA
1 TGTATTAAAAGAATAAAACT-AAACAA
48308831 TGTATT
1 TGTATT
48308837 TAGTATGATA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
24 2 0.07
25 10 0.37
26 15 0.56
ACGTcount: A:0.54, C:0.07, G:0.11, T:0.28
Consensus pattern (26 bp):
TGTATTAAAAGAATAAAACTAAACAA
Found at i:48309769 original size:26 final size:27
Alignment explanation
Indices: 48309733--48309795 Score: 74
Period size: 28 Copynumber: 2.3 Consensus size: 27
48309723 GGCCCGGCCC
* * * *
48309733 ATTTTTAAAAT-AAACATTAAAAAATT
1 ATTTTAAAAATAAAAAATAAAAAAAAT
48309759 ATTTTAAAAATAAAAAAATAAAAAAAAT
1 ATTTTAAAAAT-AAAAAATAAAAAAAAT
48309787 ATTTTAAAA
1 ATTTTAAAA
48309796 GTATTTTAAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 10 0.32
28 21 0.68
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (27 bp):
ATTTTAAAAATAAAAAATAAAAAAAAT
Found at i:48315415 original size:35 final size:35
Alignment explanation
Indices: 48315376--48315452 Score: 127
Period size: 35 Copynumber: 2.2 Consensus size: 35
48315366 TATCCTATCT
*
48315376 TTAAGGGTTTGACTTTATCTTATTTGAAAGCTAAG
1 TTAAGGATTTGACTTTATCTTATTTGAAAGCTAAG
*
48315411 TTAAGGATTTGACTTTATCTTATTTGAAAGCTAGG
1 TTAAGGATTTGACTTTATCTTATTTGAAAGCTAAG
*
48315446 TTGAGGA
1 TTAAGGA
48315453 GTTTCTTTCA
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 39 1.00
ACGTcount: A:0.29, C:0.08, G:0.22, T:0.42
Consensus pattern (35 bp):
TTAAGGATTTGACTTTATCTTATTTGAAAGCTAAG
Found at i:48323803 original size:14 final size:14
Alignment explanation
Indices: 48323784--48323813 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
48323774 ATTTCTTTAG
48323784 TTTATTTTACTTAC
1 TTTATTTTACTTAC
*
48323798 TTTATTTTATTTAC
1 TTTATTTTACTTAC
48323812 TT
1 TT
48323814 AATAATTAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.10, G:0.00, T:0.70
Consensus pattern (14 bp):
TTTATTTTACTTAC
Found at i:48323972 original size:21 final size:21
Alignment explanation
Indices: 48323948--48323988 Score: 57
Period size: 22 Copynumber: 2.0 Consensus size: 21
48323938 CAAATAATAA
48323948 TATT-ACAAATGTACATATATT
1 TATTGACAAATGTACA-ATATT
*
48323969 TATTGATAAATGTACAATAT
1 TATTGACAAATGTACAATAT
48323989 CATCTCTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.44, C:0.07, G:0.07, T:0.41
Consensus pattern (21 bp):
TATTGACAAATGTACAATATT
Found at i:48324208 original size:17 final size:15
Alignment explanation
Indices: 48324172--48324211 Score: 53
Period size: 17 Copynumber: 2.5 Consensus size: 15
48324162 ATTTATTTCA
48324172 TAATATAATAATAAT
1 TAATATAATAATAAT
*
48324187 TAATATAATTTATAATT
1 TAATATAA-TAATAA-T
48324204 TAATATAA
1 TAATATAA
48324212 AACCTTAATC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
15 8 0.36
16 5 0.23
17 9 0.41
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
TAATATAATAATAAT
Found at i:48329983 original size:30 final size:30
Alignment explanation
Indices: 48329949--48330012 Score: 85
Period size: 30 Copynumber: 2.1 Consensus size: 30
48329939 TCAAGTAGGG
*
48329949 TTAAATCCAAT-TATTATAATTCTATATTTT
1 TTAAATCC-ATGTATGATAATTCTATATTTT
* *
48329979 TTAAATGCATGTATGATAATTCTATTTTTT
1 TTAAATCCATGTATGATAATTCTATATTTT
48330009 TTAA
1 TTAA
48330013 TAAAACAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 28 0.93
ACGTcount: A:0.34, C:0.08, G:0.05, T:0.53
Consensus pattern (30 bp):
TTAAATCCATGTATGATAATTCTATATTTT
Found at i:48335028 original size:63 final size:63
Alignment explanation
Indices: 48334908--48335032 Score: 187
Period size: 63 Copynumber: 2.0 Consensus size: 63
48334898 GGTCAACTCT
* * **
48334908 AGGACTTTCCTGGCATGTTCTCATACCAATGTCCACCACAAATTATGTTTAGGAACTACTTCC
1 AGGACTTTCCTGGCATGTTCTCATACCAATGTCCACCACAAATTATCTTGACCAACTACTTCC
** *
48334971 AGGACTTTCCTGGCATGTTCTCATGTCAATGTCCACCGCAAATTATCTTGACCAACTACTTC
1 AGGACTTTCCTGGCATGTTCTCATACCAATGTCCACCACAAATTATCTTGACCAACTACTTC
48335033 TCAGTAACCT
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
63 55 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (63 bp):
AGGACTTTCCTGGCATGTTCTCATACCAATGTCCACCACAAATTATCTTGACCAACTACTTCC
Found at i:48335293 original size:30 final size:30
Alignment explanation
Indices: 48335248--48335320 Score: 85
Period size: 30 Copynumber: 2.4 Consensus size: 30
48335238 ATTAATGATA
* * *
48335248 AATAAAATATTTTAAA-AACTTAAATATAAT
1 AATAAATTATATTAAATAA-TTAAATACAAT
*
48335278 AATAAATTATATTAAATAATTTAATACAAT
1 AATAAATTATATTAAATAATTAAATACAAT
*
48335308 GATAAATTATATT
1 AATAAATTATATT
48335321 TATATAATGG
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
30 35 0.95
31 2 0.05
ACGTcount: A:0.56, C:0.03, G:0.01, T:0.40
Consensus pattern (30 bp):
AATAAATTATATTAAATAATTAAATACAAT
Found at i:48335491 original size:55 final size:55
Alignment explanation
Indices: 48335425--48335538 Score: 185
Period size: 55 Copynumber: 2.1 Consensus size: 55
48335415 TTTAAGTAGA
* *
48335425 AAAACAATTTTTCACCGTAGTTTTGACCCCAAAATTCAATTAT-CTTTCTAGGTGT
1 AAAACAATTTTTCACCGTAGTTTTAACCCCAAAAATCAATTATAC-TTCTAGGTGT
*
48335480 AAAACAATTTTTCACCGTAGTTTTAACCCCAAAAATCAGTTATACTTCTAGGTGT
1 AAAACAATTTTTCACCGTAGTTTTAACCCCAAAAATCAATTATACTTCTAGGTGT
48335535 AAAA
1 AAAA
48335539 GCACTTTTGG
Statistics
Matches: 55, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
55 54 0.98
56 1 0.02
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.35
Consensus pattern (55 bp):
AAAACAATTTTTCACCGTAGTTTTAACCCCAAAAATCAATTATACTTCTAGGTGT
Found at i:48338094 original size:195 final size:195
Alignment explanation
Indices: 48337856--48338252 Score: 758
Period size: 195 Copynumber: 2.0 Consensus size: 195
48337846 TTGGGAGTCG
* *
48337856 TCTTTATTGGGCTTATTCTTTGCTATACATAGTTGATTGATTGCTAAGCAGGAGAAATACATAAT
1 TCTTTCTTGGGCTTATTCTTTGCCATACATAGTTGATTGATTGCTAAGCAGGAGAAATACATAAT
48337921 TTTTTGTTAATGATTTTGATGCATAGATTACGGTCTGTTGGTTATCAGGGTTATAATCTCCGCCT
66 TTTTTGTTAATGATTTTGATGCATAGATTACGGTCTGTTGGTTATCAGGGTTATAATCTCCGCCT
48337986 TTAGGAAAGTTTGCCACTTTTTACTTATTTTGATATGTCTGACTGCTGTATGTTGTTATGTGACT
131 TTAGGAAAGTTTGCCACTTTTTACTTATTTTGATATGTCTGACTGCTGTATGTTGTTATGTGACT
48338051 TCTTTCTTGGGCTTATTCTTTGCCATACATAGTTGATTGATTGCTAAGCAGGAGAAATACATAAT
1 TCTTTCTTGGGCTTATTCTTTGCCATACATAGTTGATTGATTGCTAAGCAGGAGAAATACATAAT
* *
48338116 TTTTTGTTAATGATTTTGATGCATATATTTCGGTCTGTTGGTTATCAGGGTTATAATCTCCGCCT
66 TTTTTGTTAATGATTTTGATGCATAGATTACGGTCTGTTGGTTATCAGGGTTATAATCTCCGCCT
48338181 TTAGGAAAGTTTGCCACTTTTTACTTATTTTGATATGTCTGACTGCTGTATGTTGTTATGTGACT
131 TTAGGAAAGTTTGCCACTTTTTACTTATTTTGATATGTCTGACTGCTGTATGTTGTTATGTGACT
48338246 TCTTTCT
1 TCTTTCT
48338253 CTTTTCTCTT
Statistics
Matches: 198, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
195 198 1.00
ACGTcount: A:0.22, C:0.14, G:0.19, T:0.45
Consensus pattern (195 bp):
TCTTTCTTGGGCTTATTCTTTGCCATACATAGTTGATTGATTGCTAAGCAGGAGAAATACATAAT
TTTTTGTTAATGATTTTGATGCATAGATTACGGTCTGTTGGTTATCAGGGTTATAATCTCCGCCT
TTAGGAAAGTTTGCCACTTTTTACTTATTTTGATATGTCTGACTGCTGTATGTTGTTATGTGACT
Found at i:48341161 original size:23 final size:24
Alignment explanation
Indices: 48341115--48341166 Score: 61
Period size: 23 Copynumber: 2.2 Consensus size: 24
48341105 ATAAAATTAT
* *
48341115 TTAATAAATATATTTTTTTGAATAA
1 TTAATAAATATA-TTATTTAAATAA
*
48341140 TTAATAAATATA-TATTTAAATAG
1 TTAATAAATATATTATTTAAATAA
48341163 TTAA
1 TTAA
48341167 AACTATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
23 12 0.50
25 12 0.50
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (24 bp):
TTAATAAATATATTATTTAAATAA
Found at i:48341580 original size:15 final size:15
Alignment explanation
Indices: 48341544--48341597 Score: 76
Period size: 15 Copynumber: 3.7 Consensus size: 15
48341534 TAAATTCAAT
*
48341544 ACTTAA-TTTTTAAT
1 ACTTAATTTTTTAAC
48341558 ACTT-ATTTTTTAAC
1 ACTTAATTTTTTAAC
*
48341572 ACTTAATTTTTTGAC
1 ACTTAATTTTTTAAC
48341587 ACTTAATTTTT
1 ACTTAATTTTT
48341598 CAATCTATCA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
13 1 0.03
14 15 0.42
15 20 0.56
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (15 bp):
ACTTAATTTTTTAAC
Found at i:48341596 original size:13 final size:14
Alignment explanation
Indices: 48341544--48341597 Score: 72
Period size: 14 Copynumber: 3.8 Consensus size: 14
48341534 TAAATTCAAT
*
48341544 ACTTAATTTTTAAT
1 ACTTAATTTTTAAC
*
48341558 ACTTATTTTTTAAC
1 ACTTAATTTTTAAC
*
48341572 ACTTAATTTTTTGAC
1 ACTTAA-TTTTTAAC
48341587 ACTTAATTTTT
1 ACTTAATTTTT
48341598 CAATCTATCA
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
14 22 0.63
15 13 0.37
ACGTcount: A:0.30, C:0.11, G:0.02, T:0.57
Consensus pattern (14 bp):
ACTTAATTTTTAAC
Found at i:48347300 original size:11 final size:11
Alignment explanation
Indices: 48347283--48347325 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
48347273 CAAAATAGTG
48347283 AAAAAAATAAC
1 AAAAAAATAAC
* *
48347294 AAGAAAATAGC
1 AAAAAAATAAC
* *
48347305 AACAAAATAAT
1 AAAAAAATAAC
48347316 AAAAAAATAA
1 AAAAAAATAA
48347326 ATATTTTGCA
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
11 26 1.00
ACGTcount: A:0.77, C:0.07, G:0.05, T:0.12
Consensus pattern (11 bp):
AAAAAAATAAC
Found at i:48355325 original size:2 final size:2
Alignment explanation
Indices: 48355318--48355343 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
48355308 GAGGTGGCAC
48355318 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
48355344 TTACGTGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:48361236 original size:6 final size:6
Alignment explanation
Indices: 48361225--48361252 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
48361215 AGAATTAGGG
48361225 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTT
48361253 TATGAAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTCT
Found at i:48367612 original size:24 final size:24
Alignment explanation
Indices: 48367570--48367621 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
48367560 AATCAAAGTC
** *
48367570 AAATATATTATGCTAATAAATGCT
1 AAATATATTATAATAATAAATACT
*
48367594 AAATATATTATAATCATAAATACT
1 AAATATATTATAATAATAAATACT
48367618 AAAT
1 AAAT
48367622 CTTCTAGAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.08, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATAATAATAAATACT
Found at i:48369894 original size:110 final size:110
Alignment explanation
Indices: 48369543--48369956 Score: 688
Period size: 110 Copynumber: 3.7 Consensus size: 110
48369533 NNNNNTAAAT
* *
48369543 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTT-TCAAATGCAAAACATTGC
1 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGCAAAACATTGC
48369607 CTTATTTTAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
66 CTTATTTTAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
*
48369652 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAATGCAAAAACATTG
1 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGC-AAAACATTG
*
48369717 CCTTATTTCAAAAATTCTTTAAAAGGATATTTAGCCATTTGGTTGAAC
65 CCTTATTT-TAAAATT-TTTAAAAGGATATTTAGCCATTTGGTTGAAC
* * *
48369765 GAGAAAAACCGACACCCAGCACCTTAGGGCACGTTCTCTCGAATTTCCCAAACGCAAAACGTTGC
1 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGCAAAACATTGC
* *
48369830 CTTATTTTAAAATTTTTAAAAGGATATTTAGCCAGTTGGTTGAAT
66 CTTATTTTAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
48369875 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGCCAAAA-ATTG
1 GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACG-CAAAACATTG
*
48369939 CCTTATTTGAAAATTTTT
65 CCTTATTTTAAAATTTTT
48369957 GTTTTTGATA
Statistics
Matches: 287, Mismatches: 13, Indels: 9
0.93 0.04 0.03
Matches are distributed among these distances:
109 46 0.16
110 108 0.38
111 28 0.10
112 22 0.08
113 83 0.29
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (110 bp):
GAGAAAAATCGACACCCAGCACCTTAGGGCACGTTTTCTCGAATTTCCCAAACGCAAAACATTGC
CTTATTTTAAAATTTTTAAAAGGATATTTAGCCATTTGGTTGAAC
Found at i:48370095 original size:18 final size:17
Alignment explanation
Indices: 48370064--48370099 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
48370054 ATATATAATG
*
48370064 AAAAGAAATCAACAAAT
1 AAAAGAAATAAACAAAT
48370081 AAAAGTAAATAAACAAAT
1 AAAAG-AAATAAACAAAT
48370099 A
1 A
48370100 TAAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 5 0.29
18 12 0.71
ACGTcount: A:0.72, C:0.08, G:0.06, T:0.14
Consensus pattern (17 bp):
AAAAGAAATAAACAAAT
Found at i:48370462 original size:22 final size:22
Alignment explanation
Indices: 48370419--48370466 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
48370409 TGTGTGTAAG
* *
48370419 TATATAAAAAAATATATGTATA
1 TATATAAAAAAACATATATATA
*
48370441 TATATAAAAAAACGTATATATA
1 TATATAAAAAAACATATATATA
48370463 TATA
1 TATA
48370467 AGGGCAAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (22 bp):
TATATAAAAAAACATATATATA
Found at i:48371610 original size:13 final size:14
Alignment explanation
Indices: 48371592--48371625 Score: 52
Period size: 13 Copynumber: 2.5 Consensus size: 14
48371582 CTTTTGGGGG
*
48371592 ATTTGGGCTCT-AA
1 ATTTGGGCTATAAA
48371605 ATTTGGGCTATAAA
1 ATTTGGGCTATAAA
48371619 ATTTGGG
1 ATTTGGG
48371626 TTAGGCTAGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.53
14 9 0.47
ACGTcount: A:0.26, C:0.09, G:0.26, T:0.38
Consensus pattern (14 bp):
ATTTGGGCTATAAA
Found at i:48372767 original size:24 final size:24
Alignment explanation
Indices: 48372752--48372805 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
48372742 AATTAAAGTC
48372752 AAATATATTATGCTAATAAATACT
1 AAATATATTATGCTAATAAATACT
* * *
48372776 AAATATATTATACTCATAAGTACT
1 AAATATATTATGCTAATAAATACT
48372800 AAATAT
1 AAATAT
48372806 TCTAGAAAGA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATATATTATGCTAATAAATACT
Found at i:48374723 original size:16 final size:17
Alignment explanation
Indices: 48374702--48374737 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
48374692 TATTAAAAAA
48374702 TATATTTT-ATAATTTT
1 TATATTTTAATAATTTT
*
48374718 TATATTTTAATTATTTT
1 TATATTTTAATAATTTT
48374735 TAT
1 TAT
48374738 GTGGATCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TATATTTTAATAATTTT
Found at i:48382681 original size:25 final size:25
Alignment explanation
Indices: 48382653--48382700 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
48382643 AGGTCTATTC
48382653 ATTTTATTTTAAAAATTAAAAATTT
1 ATTTTATTTTAAAAATTAAAAATTT
*
48382678 ATTTTTTTTTAAAAATTAAAAAT
1 ATTTTATTTTAAAAATTAAAAAT
48382701 CTTAATCCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (25 bp):
ATTTTATTTTAAAAATTAAAAATTT
Found at i:48384394 original size:2 final size:2
Alignment explanation
Indices: 48384387--48384446 Score: 120
Period size: 2 Copynumber: 30.0 Consensus size: 2
48384377 GTTGGGAAGA
48384387 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
48384429 AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG
48384447 GGGGGGTTTT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 58 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:48384502 original size:2 final size:2
Alignment explanation
Indices: 48384490--48384522 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
48384480 NGGGAAAAAG
*
48384490 GA GA GA AA GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
48384523 GGCATTGTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
GA
Found at i:48390453 original size:89 final size:89
Alignment explanation
Indices: 48390325--48390505 Score: 344
Period size: 89 Copynumber: 2.0 Consensus size: 89
48390315 AAATTATATA
*
48390325 AAGTAGTAGTGATATTGATGAAGGAAACTTGATAAGAAAAATAATGCACATATCCACTATGATGT
1 AAGTAGTAGTGATATTGATGAAGGAAACTTGATAAGAAAAATAATGCACATATCCACAATGATGT
48390390 TTAGGTAAATCATATACTATAGTG
66 TTAGGTAAATCATATACTATAGTG
*
48390414 AAGTAGTAGTGATATTGATGAAGGAAACTTGATAAGAAAAATAATGCACATATCCACAATGCTGT
1 AAGTAGTAGTGATATTGATGAAGGAAACTTGATAAGAAAAATAATGCACATATCCACAATGATGT
48390479 TTAGGTAAATCATATACTATAGTG
66 TTAGGTAAATCATATACTATAGTG
48390503 AAG
1 AAG
48390506 CAAATCGCAT
Statistics
Matches: 90, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
89 90 1.00
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.29
Consensus pattern (89 bp):
AAGTAGTAGTGATATTGATGAAGGAAACTTGATAAGAAAAATAATGCACATATCCACAATGATGT
TTAGGTAAATCATATACTATAGTG
Found at i:48396925 original size:6 final size:6
Alignment explanation
Indices: 48396914--48396951 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
48396904 AACTATATAA
*
48396914 TATATG TATATG TATATG TATACG TATATG TATATG TA
1 TATATG TATATG TATATG TATATG TATATG TATATG TA
48396952 CCTGCAATAG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.34, C:0.03, G:0.16, T:0.47
Consensus pattern (6 bp):
TATATG
Found at i:48403633 original size:23 final size:23
Alignment explanation
Indices: 48403607--48403660 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
48403597 TACTAAATAA
* *
48403607 ATTAATAACAAT-AAAATAATAT
1 ATTAATAAAAATCAAAATAAAAT
*
48403629 CATTAA-AAAAATCAAATTAAAAT
1 -ATTAATAAAAATCAAAATAAAAT
48403652 ATTAATAAA
1 ATTAATAAA
48403661 CTAATATTTA
Statistics
Matches: 26, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
22 10 0.38
23 16 0.62
ACGTcount: A:0.65, C:0.06, G:0.00, T:0.30
Consensus pattern (23 bp):
ATTAATAAAAATCAAAATAAAAT
Found at i:48408663 original size:113 final size:111
Alignment explanation
Indices: 48408542--48408744 Score: 273
Period size: 112 Copynumber: 1.8 Consensus size: 111
48408532 AAAAAAAAAA
*
48408542 TTTACTGTACTGGGTATCAGCCATTGACAGGCC-AGCACCCAAAAAAAATTTCTTTTTTACTTTT
1 TTTACTGTACTGGGTACCAGCCATTGACA-GCCTAGCA-CCAAAAAAAATTTCTTTTTTACTTTT
* * *
48408606 TTTTGTACTCTGGTGCCTGCCATTGACAAACCAAAACTCGAAATTTTTT
64 TTTCGTACT-GGGTGCCGGCCATTGACAAACCAAAACTCGAAATTTTTT
* * * ** * *
48408655 TTTACTGTACTGGGTGCCGGCCATTGACAGCCTAGCACCTAAAAATTTTTTTTTTTTCCTTTTTT
1 TTTACTGTACTGGGTACCAGCCATTGACAGCCTAGCACCAAAAAAAATTTCTTTTTTACTTTTTT
48408720 TCGTACTGGGTGCCGGCCATTGACA
66 TCGTACTGGGTGCCGGCCATTGACA
48408745 GGCCAGCACC
Statistics
Matches: 78, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
111 16 0.21
112 32 0.41
113 30 0.38
ACGTcount: A:0.23, C:0.23, G:0.17, T:0.37
Consensus pattern (111 bp):
TTTACTGTACTGGGTACCAGCCATTGACAGCCTAGCACCAAAAAAAATTTCTTTTTTACTTTTTT
TCGTACTGGGTGCCGGCCATTGACAAACCAAAACTCGAAATTTTTT
Found at i:48412517 original size:2 final size:2
Alignment explanation
Indices: 48412510--48412540 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
48412500 TTATTAATAG
48412510 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
48412541 TAACTATACA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:48426441 original size:97 final size:97
Alignment explanation
Indices: 48426275--48426470 Score: 383
Period size: 97 Copynumber: 2.0 Consensus size: 97
48426265 TGATTTATAT
*
48426275 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATGTTTGGTTTAATATATC
1 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
48426340 TAGATTAATGATCAATATTTGATGTGCTCAAA
66 TAGATTAATGATCAATATTTGATGTGCTCAAA
48426372 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
1 TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
48426437 TAGATTAATGATCAATATTTGATGTGCTCAAA
66 TAGATTAATGATCAATATTTGATGTGCTCAAA
48426469 TT
1 TT
48426471 GGTGGTTGAA
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (97 bp):
TTATGCAACAAATACTTAGTTTCTTGTTCTCAATTATGTGTGCTTAATATTTGGTTTAATATATC
TAGATTAATGATCAATATTTGATGTGCTCAAA
Found at i:48428629 original size:43 final size:43
Alignment explanation
Indices: 48428574--48428745 Score: 344
Period size: 43 Copynumber: 4.0 Consensus size: 43
48428564 AAACAAGAGT
48428574 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
1 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
48428617 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
1 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
48428660 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
1 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
48428703 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
1 TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
48428746 ATTCAACCAT
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 129 1.00
ACGTcount: A:0.40, C:0.19, G:0.26, T:0.16
Consensus pattern (43 bp):
TAGTGGGCGGACACAAAGCAGATGATATCATTCGAAGAACAAC
Found at i:48433624 original size:16 final size:15
Alignment explanation
Indices: 48433575--48433625 Score: 50
Period size: 16 Copynumber: 3.3 Consensus size: 15
48433565 ATAATTTTTT
48433575 TAAATAATCAAAACC
1 TAAATAATCAAAACC
*
48433590 TAAATAAATTCAAGA-C
1 TAAAT-AA-TCAAAACC
*
48433606 TAACCTAATCAAAACC
1 TAA-ATAATCAAAACC
48433622 TAAA
1 TAAA
48433626 ATAAAATTAT
Statistics
Matches: 28, Mismatches: 4, Indels: 8
0.70 0.10 0.20
Matches are distributed among these distances:
15 10 0.36
16 12 0.43
17 6 0.21
ACGTcount: A:0.57, C:0.20, G:0.02, T:0.22
Consensus pattern (15 bp):
TAAATAATCAAAACC
Found at i:48433899 original size:21 final size:22
Alignment explanation
Indices: 48433857--48433901 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
48433847 TTCTAGACAT
*
48433857 AAAAAAAGTGAAATTAACATTA
1 AAAAAAAGGGAAATTAACATTA
48433879 AAAAAAAGGGAGAA-TAA-ATTA
1 AAAAAAAGGGA-AATTAACATTA
48433900 AA
1 AA
48433902 TCCACATGCA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 13 0.62
23 2 0.10
ACGTcount: A:0.67, C:0.02, G:0.13, T:0.18
Consensus pattern (22 bp):
AAAAAAAGGGAAATTAACATTA
Found at i:48434000 original size:18 final size:19
Alignment explanation
Indices: 48433974--48434009 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
48433964 NNNNNNNNNN
*
48433974 GTTACACAAAAA-ATTTAC
1 GTTAAACAAAAATATTTAC
48433992 GTTAAACAAAAATATTTA
1 GTTAAACAAAAATATTTA
48434010 AATAATATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.53, C:0.11, G:0.06, T:0.31
Consensus pattern (19 bp):
GTTAAACAAAAATATTTAC
Found at i:48436355 original size:19 final size:20
Alignment explanation
Indices: 48436312--48436355 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
48436302 AAAAAGTAAC
* *
48436312 GATTTCAACTTTTTAGTGTA
1 GATTTCAACGTTTTAGGGTA
*
48436332 TATTTCAA-GTTTTAGGGTA
1 GATTTCAACGTTTTAGGGTA
48436351 GATTT
1 GATTT
48436356 GACAAAAAAG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 13 0.65
20 7 0.35
ACGTcount: A:0.25, C:0.07, G:0.18, T:0.50
Consensus pattern (20 bp):
GATTTCAACGTTTTAGGGTA
Done.