Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 15 of 163
Found at i:5148163 original size:14 final size:16
Alignment explanation
Indices: 5148124--5148164 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
5148114 GAAATAAAAA
5148124 TAAAAATG-TTATCAT
1 TAAAAATGATTATCAT
5148139 TAAAAAT-ATTAT-AT
1 TAAAAATGATTATCAT
5148153 T-AAAATGATTAT
1 TAAAAATGATTAT
5148165 TTATAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
13 5 0.21
14 8 0.33
15 11 0.46
ACGTcount: A:0.51, C:0.02, G:0.05, T:0.41
Consensus pattern (16 bp):
TAAAAATGATTATCAT
Found at i:5151780 original size:17 final size:17
Alignment explanation
Indices: 5151746--5151780 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5151736 TTTCAACTCT
* *
5151746 AGTGGTTAAATTAGTTA
1 AGTGGTTAAACTAATTA
5151763 AGTGGTTAAACTAATTA
1 AGTGGTTAAACTAATTA
5151780 A
1 A
5151781 TTCATCAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.37
Consensus pattern (17 bp):
AGTGGTTAAACTAATTA
Found at i:5158160 original size:17 final size:19
Alignment explanation
Indices: 5158127--5158161 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
5158117 TTCACTATTA
5158127 TATTGTATAACTTTTGTTT
1 TATTGTATAACTTTTGTTT
5158146 TATTGT-TAA-TTTTGTT
1 TATTGTATAACTTTTGTT
5158162 ACTATTATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.20, C:0.03, G:0.11, T:0.66
Consensus pattern (19 bp):
TATTGTATAACTTTTGTTT
Found at i:5158279 original size:32 final size:32
Alignment explanation
Indices: 5158219--5158280 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
5158209 ATTTAAATAT
5158219 AAATATTTTTTAATTTATTTTGAATTTATTAGA
1 AAATATTTTTTAA-TTATTTTGAATTTATTAGA
* *
5158252 AAATATTTATTTAA-TATTTTTAGTTTATT
1 AAATATTT-TTTAATTATTTTGAATTTATT
5158281 TGATGTATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
32 13 0.50
33 8 0.31
34 5 0.19
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (32 bp):
AAATATTTTTTAATTATTTTGAATTTATTAGA
Found at i:5166829 original size:12 final size:12
Alignment explanation
Indices: 5166812--5166838 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
5166802 CCTTTGAGTC
5166812 TTAAAATTTAGG
1 TTAAAATTTAGG
5166824 TTAAAATTTAGG
1 TTAAAATTTAGG
5166836 TTA
1 TTA
5166839 GAGTCTTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (12 bp):
TTAAAATTTAGG
Found at i:5167330 original size:24 final size:24
Alignment explanation
Indices: 5167303--5167348 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
5167293 TTTCTCTTTG
* *
5167303 TATTGGGTTGATTTTAATATAACA
1 TATTGAGTTGATGTTAATATAACA
* *
5167327 TATTTATTTGATGTTAATATAA
1 TATTGAGTTGATGTTAATATAA
5167349 ATGTAAATGT
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.35, C:0.02, G:0.13, T:0.50
Consensus pattern (24 bp):
TATTGAGTTGATGTTAATATAACA
Found at i:5167363 original size:18 final size:18
Alignment explanation
Indices: 5167337--5167373 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
5167327 TATTTATTTG
* *
5167337 ATGTTAATATAAATGTAA
1 ATGTAAATATAAATATAA
5167355 ATGTAAATATAAATATAA
1 ATGTAAATATAAATATAA
5167373 A
1 A
5167374 ATTTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.08, T:0.35
Consensus pattern (18 bp):
ATGTAAATATAAATATAA
Found at i:5168360 original size:3 final size:3
Alignment explanation
Indices: 5168352--5168424 Score: 146
Period size: 3 Copynumber: 24.3 Consensus size: 3
5168342 NNNNNAACAT
5168352 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
5168400 ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA A
5168425 ACGGAAAAAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:5171321 original size:6 final size:6
Alignment explanation
Indices: 5171307--5171342 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
5171297 GACAGGAGAA
*
5171307 ATATTT ATATCT ATATCT ATATCT ATATCT A-ATCT A
1 ATATCT ATATCT ATATCT ATATCT ATATCT ATATCT A
5171343 CATTAAAATC
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
5 5 0.17
6 24 0.83
ACGTcount: A:0.36, C:0.14, G:0.00, T:0.50
Consensus pattern (6 bp):
ATATCT
Found at i:5172291 original size:43 final size:43
Alignment explanation
Indices: 5172222--5172330 Score: 177
Period size: 43 Copynumber: 2.5 Consensus size: 43
5172212 GCTTCCTAAA
*
5172222 GCGCATTT-TACACAAACGCCGCTAAAGAACATGTTCTTTAGCG
1 GCGC-TTTCTACACAAACGCCACTAAAGAACATGTTCTTTAGCG
5172265 GCGCTTTCTACACAAACGCCACTAAAGAACATGTTCTTTAGCG
1 GCGCTTTCTACACAAACGCCACTAAAGAACATGTTCTTTAGCG
5172308 GCGC-TTCTAACACAAACGCCACT
1 GCGCTTTCT-ACACAAACGCCACT
5172331 TTTTGTTTGG
Statistics
Matches: 63, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
42 7 0.11
43 56 0.89
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (43 bp):
GCGCTTTCTACACAAACGCCACTAAAGAACATGTTCTTTAGCG
Found at i:5172666 original size:78 final size:79
Alignment explanation
Indices: 5172563--5172720 Score: 309
Period size: 78 Copynumber: 2.0 Consensus size: 79
5172553 TCTGTTCTGC
5172563 TCTGCTTCTCTCGCTGCAGCCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAG
1 TCTGCTTCTCTCGCTGCAGCCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAG
5172628 TTCTTCATATTTCT
66 TTCTTCATATTTCT
5172642 TCTGCTTCTC-CGCTGCAGCCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAG
1 TCTGCTTCTCTCGCTGCAGCCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAG
5172706 TTCTTCATATTTCT
66 TTCTTCATATTTCT
5172720 T
1 T
5172721 TTGAACTTCT
Statistics
Matches: 79, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
78 69 0.87
79 10 0.13
ACGTcount: A:0.11, C:0.29, G:0.20, T:0.39
Consensus pattern (79 bp):
TCTGCTTCTCTCGCTGCAGCCTCTGCTTCTCTGGATGCCGCATCAGCTTTAAGTTGTCGCTGGAG
TTCTTCATATTTCT
Found at i:5176846 original size:41 final size:41
Alignment explanation
Indices: 5176787--5177123 Score: 611
Period size: 41 Copynumber: 8.2 Consensus size: 41
5176777 NNNNNNNNNN
* * * *
5176787 CTAAATCCCAGAATATTAGCGGCGCATAAATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
*
5176828 CTAAAGCTCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
* *
5176869 CTAAAGCACATAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5176910 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5176951 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5176992 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5177033 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5177074 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
1 CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
5177115 CTAAAGCCC
1 CTAAAGCCC
5177124 CCGAAAAGTC
Statistics
Matches: 287, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 287 1.00
ACGTcount: A:0.37, C:0.28, G:0.19, T:0.15
Consensus pattern (41 bp):
CTAAAGCCCAGAACATTAGCGGCGCTTACATAAAAACGCCG
Found at i:5177420 original size:15 final size:15
Alignment explanation
Indices: 5177402--5177439 Score: 51
Period size: 14 Copynumber: 2.5 Consensus size: 15
5177392 CTTCAATATT
5177402 TATTTTTTCAACACA
1 TATTTTTTCAACACA
*
5177417 TA-TTTTTCAACACT
1 TATTTTTTCAACACA
5177431 TAATTTTTT
1 T-ATTTTTT
5177440 AGTTTATCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 12 0.60
15 3 0.15
16 5 0.25
ACGTcount: A:0.29, C:0.16, G:0.00, T:0.55
Consensus pattern (15 bp):
TATTTTTTCAACACA
Found at i:5179791 original size:114 final size:112
Alignment explanation
Indices: 5179470--5179939 Score: 509
Period size: 114 Copynumber: 4.3 Consensus size: 112
5179460 TGTCTAGGAT
* * * * *
5179470 GTCTCATCTGAAGCTATCTCGGCTGCACAAATGTCTCCAGGAGCAG-CTGGGGGAGGGCCTCCTC
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAA-GTCTCCAGGAG-AGTCT-GGGGAGGGTCTCCTC
* * *
5179534 AGGTTCAGCATTCTGGACTGTCGGGCACTGCCTCTGGACTCATCAAGCAG
63 AGGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * * *
5179584 ATCTCTTCCGATGCCATCTCGGCTGCCCAAA--CTCCAGGAGTGTTTGAGGGAGGGTCTCCTCAG
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAAGTCTCCAGGAGAGTCTG-GGGAGGGTCTCCTCAG
* * *
5179647 GCTCAGCCTTCTGAACTGTTGGGTACTGCCTCTGGATTCATCAAGCAG
65 GCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * *
5179695 GTCTCATCCGATGCCATCTCGGTTGCCCAAATGTCTCCAGGAGGGTCTGGGGAAAGGTCTCCTCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAA-GTCTCCAGGAGAGTCTGGGG-AGGGTCTCCTCA
* *
5179760 GGCTCAGAATTCTGGACTGTTGGGCACTGCCTCTGGGTTCATCAAGCAG
64 GGCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* * *
5179809 GTCTCATCCGATGCCATCTCGACTGCCCAAAGTTCTCCA-G-GAG--T------GG-CTACTAAG
1 GTCTCATCCGATGCCATCTCGGCTGCCCAAAG-TCTCCAGGAGAGTCTGGGGAGGGTCTCCTCAG
* * ** *
5179863 GCCCAGCATTCTGGACTGTTCGGTGCTGCCTCTGGATTGATCAAGCAG
65 GCTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
* *
5179911 GTCTCATCTGATGCCATCTCAGCTGCCCA
1 GTCTCATCCGATGCCATCTCGGCTGCCCA
5179940 CAATGTGGCT
Statistics
Matches: 308, Mismatches: 41, Indels: 26
0.82 0.11 0.07
Matches are distributed among these distances:
102 73 0.24
103 2 0.01
110 3 0.01
111 95 0.31
112 2 0.01
113 5 0.02
114 128 0.42
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (112 bp):
GTCTCATCCGATGCCATCTCGGCTGCCCAAAGTCTCCAGGAGAGTCTGGGGAGGGTCTCCTCAGG
CTCAGCATTCTGGACTGTTGGGCACTGCCTCTGGATTCATCAAGCAG
Found at i:5183123 original size:18 final size:18
Alignment explanation
Indices: 5183100--5183201 Score: 96
Period size: 18 Copynumber: 5.7 Consensus size: 18
5183090 GGTTGGAGGT
*
5183100 GATTTGAGTAAGCTTGGC
1 GATTTGAGTAAGCTTGGA
* *
5183118 GATTTGAGTAATCTCGGA
1 GATTTGAGTAAGCTTGGA
* * * *
5183136 GATTTGTGCACGCTTGGC
1 GATTTGAGTAAGCTTGGA
* *
5183154 GATTTCAGTACGCTTGGA
1 GATTTGAGTAAGCTTGGA
* * *
5183172 GGTTTGAGTAAGCTCGGT
1 GATTTGAGTAAGCTTGGA
5183190 GATTTGAGTAAG
1 GATTTGAGTAAG
5183202 ATTGATGATC
Statistics
Matches: 65, Mismatches: 19, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 65 1.00
ACGTcount: A:0.22, C:0.13, G:0.32, T:0.33
Consensus pattern (18 bp):
GATTTGAGTAAGCTTGGA
Found at i:5185468 original size:6 final size:6
Alignment explanation
Indices: 5185457--5185500 Score: 79
Period size: 6 Copynumber: 7.3 Consensus size: 6
5185447 ATCCCCCAAC
*
5185457 CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CTAAAT CC
1 CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CCAAAT CC
5185501 TAGTAATGGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
6 36 1.00
ACGTcount: A:0.48, C:0.34, G:0.00, T:0.18
Consensus pattern (6 bp):
CCAAAT
Found at i:5187059 original size:11 final size:10
Alignment explanation
Indices: 5187029--5187059 Score: 53
Period size: 10 Copynumber: 3.0 Consensus size: 10
5187019 TGATTGATCC
5187029 TATATTTCAT
1 TATATTTCAT
5187039 TATATTTCAT
1 TATATTTCAT
5187049 TATAGTTTCAT
1 TATA-TTTCAT
5187060 GATTCGGAGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.70
11 6 0.30
ACGTcount: A:0.29, C:0.10, G:0.03, T:0.58
Consensus pattern (10 bp):
TATATTTCAT
Found at i:5193186 original size:224 final size:225
Alignment explanation
Indices: 5192791--5193239 Score: 873
Period size: 224 Copynumber: 2.0 Consensus size: 225
5192781 ATTTTTCCAA
5192791 GATTTTCATATGCTTTAAGGATATGAATACGATATGAATATTTCAAGAAAAATGTGAAGAGCCGG
1 GATTTTCATATGCTTTAAGGATATGAATACGATATGAATATTTCAAGAAAAATGTGAAGAGCCGG
5192856 AGTCCCTGGTAGTGTAGTTTTAGTTGGATTATTTGTGAGCTTGTCTTGGTAAGTGTCATAAGGCT
66 AGTCCCTGGTAGTGTAGTTTTAGTTGGATTATTTGTGAGCTTGTCTTGGTAAGTGTCATAAGGCT
*
5192921 AGCTTTCAAGATTTATATGCCGTTTAAGAGTGTAGTTGCTGTCTGCTTTAGCGGCAATGTGTATC
131 AGCTTTCAAGATTTATATGCCATTTAAGAGTGTAGTTGCTGTCTGCTTTAGCGGCAATGTGTATC
5192986 -ATCATTGTATTTTAAGATGCTTCATTTCT
196 AATCATTGTATTTTAAGATGCTTCATTTCT
5193015 GATTTTCATATGCTTTAAGGATATGAATACGATATGAATATTTCAAGAAAAATGTGAAGAGCCGG
1 GATTTTCATATGCTTTAAGGATATGAATACGATATGAATATTTCAAGAAAAATGTGAAGAGCCGG
5193080 AGTCCCTGGTAGTGTAGTTTTAGTTGGATTATTTGTGAGCTTGTCTTGGTAAGTGTCATAAGGCT
66 AGTCCCTGGTAGTGTAGTTTTAGTTGGATTATTTGTGAGCTTGTCTTGGTAAGTGTCATAAGGCT
*
5193145 AGCTTTCAAGATTTATATGCCATTTAAGAGTGTATTTGCTGTCTGCTTTAGCGGCAATGTGTATC
131 AGCTTTCAAGATTTATATGCCATTTAAGAGTGTAGTTGCTGTCTGCTTTAGCGGCAATGTGTATC
5193210 AATCATTGTATTTTAAGATGCTTCATTTCT
196 AATCATTGTATTTTAAGATGCTTCATTTCT
5193240 ATCATTTTCC
Statistics
Matches: 222, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
224 193 0.87
225 29 0.13
ACGTcount: A:0.26, C:0.12, G:0.23, T:0.39
Consensus pattern (225 bp):
GATTTTCATATGCTTTAAGGATATGAATACGATATGAATATTTCAAGAAAAATGTGAAGAGCCGG
AGTCCCTGGTAGTGTAGTTTTAGTTGGATTATTTGTGAGCTTGTCTTGGTAAGTGTCATAAGGCT
AGCTTTCAAGATTTATATGCCATTTAAGAGTGTAGTTGCTGTCTGCTTTAGCGGCAATGTGTATC
AATCATTGTATTTTAAGATGCTTCATTTCT
Found at i:5197070 original size:15 final size:16
Alignment explanation
Indices: 5197050--5197080 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
5197040 AAATTTTTTT
5197050 TCTCTCT-TTTTCTTC
1 TCTCTCTATTTTCTTC
5197065 TCTCTCTATTTTCTTC
1 TCTCTCTATTTTCTTC
5197081 CCTTTTTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.47
16 8 0.53
ACGTcount: A:0.03, C:0.32, G:0.00, T:0.65
Consensus pattern (16 bp):
TCTCTCTATTTTCTTC
Found at i:5198074 original size:36 final size:36
Alignment explanation
Indices: 5198034--5198146 Score: 86
Period size: 36 Copynumber: 3.1 Consensus size: 36
5198024 ACAAACATTC
5198034 AAATAAATTTTATTTAAGATCGAGTCATCATCAGTA
1 AAATAAATTTTATTTAAGATCGAGTCATCATCAGTA
* * * ** * * * * *
5198070 AAATAAACTATCA-TTAATATATAAATTA-CAAACATTC
1 AAATAAA-TTTTATTTAAGAT-CGAGTCATC-ATCAGTA
*
5198107 AAATAAATTTTATTTAAGATCGAGTCATCATCGGTA
1 AAATAAATTTTATTTAAGATCGAGTCATCATCAGTA
5198143 AAAT
1 AAAT
5198147 GAACTATCAT
Statistics
Matches: 51, Mismatches: 21, Indels: 10
0.62 0.26 0.12
Matches are distributed among these distances:
36 27 0.53
37 24 0.47
ACGTcount: A:0.46, C:0.12, G:0.08, T:0.35
Consensus pattern (36 bp):
AAATAAATTTTATTTAAGATCGAGTCATCATCAGTA
Found at i:5198102 original size:73 final size:73
Alignment explanation
Indices: 5198017--5198165 Score: 280
Period size: 73 Copynumber: 2.0 Consensus size: 73
5198007 TTATATTTTA
5198017 ATAAATTACAAACATTCAAATAAATTTTATTTAAGATCGAGTCATCATCAGTAAAATAAACTATC
1 ATAAATTACAAACATTCAAATAAATTTTATTTAAGATCGAGTCATCATCAGTAAAATAAACTATC
5198082 ATTAATAT
66 ATTAATAT
* *
5198090 ATAAATTACAAACATTCAAATAAATTTTATTTAAGATCGAGTCATCATCGGTAAAATGAACTATC
1 ATAAATTACAAACATTCAAATAAATTTTATTTAAGATCGAGTCATCATCAGTAAAATAAACTATC
5198155 ATTAATAT
66 ATTAATAT
5198163 ATA
1 ATA
5198166 CTTAACTACA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
73 74 1.00
ACGTcount: A:0.47, C:0.12, G:0.07, T:0.34
Consensus pattern (73 bp):
ATAAATTACAAACATTCAAATAAATTTTATTTAAGATCGAGTCATCATCAGTAAAATAAACTATC
ATTAATAT
Found at i:5206866 original size:18 final size:17
Alignment explanation
Indices: 5206838--5206872 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
5206828 ATTATTAAGA
*
5206838 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
5206855 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
5206873 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:5207110 original size:39 final size:40
Alignment explanation
Indices: 5207067--5207171 Score: 113
Period size: 44 Copynumber: 2.5 Consensus size: 40
5207057 TTCCATTATG
5207067 CTATTACACCTCTATTCCATTCAACCAAACACAAGA-TTA
1 CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
* *** *
5207106 CTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATTTG
1 CTATTACACCTCTATT-C----CATTCAACCAAACACAAGATTTA
5207151 CTATTACACCTCTATTCCATT
1 CTATTACACCTCTATTCCATT
5207172 ACACCTCTAA
Statistics
Matches: 54, Mismatches: 6, Indels: 11
0.76 0.08 0.15
Matches are distributed among these distances:
39 15 0.28
40 5 0.09
44 17 0.31
45 17 0.31
ACGTcount: A:0.31, C:0.30, G:0.05, T:0.34
Consensus pattern (40 bp):
CTATTACACCTCTATTCCATTCAACCAAACACAAGATTTA
Found at i:5207165 original size:45 final size:44
Alignment explanation
Indices: 5207065--5207174 Score: 131
Period size: 45 Copynumber: 2.6 Consensus size: 44
5207055 TTTTCCATTA
5207065 TGCTATTACACCTCTATT-C----CATTCAACCAAACACAAGAT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
* * ***
5207104 TACTATTACGCCTCTATTCCATTACATTCAACCAAACAGTTGATT
1 TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGA-T
5207149 TGCTATTACACCTCTATTCCATTACA
1 TGCTATTACACCTCTATTCCATTACA
5207175 CCTCTAATCC
Statistics
Matches: 58, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
39 16 0.28
40 1 0.02
44 16 0.28
45 25 0.43
ACGTcount: A:0.32, C:0.29, G:0.05, T:0.34
Consensus pattern (44 bp):
TGCTATTACACCTCTATTCCATTACATTCAACCAAACACAAGAT
Found at i:5207174 original size:16 final size:16
Alignment explanation
Indices: 5207153--5207222 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
5207143 TTGATTTGCT
*
5207153 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
5207169 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
5207185 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
5207201 AATACACCTCTAATCC
1 ATTACACCTCTAATCC
*
5207217 AATACA
1 ATTACA
5207223 GCGAACCAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
16 52 1.00
ACGTcount: A:0.34, C:0.36, G:0.00, T:0.30
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:5211028 original size:30 final size:29
Alignment explanation
Indices: 5210994--5211052 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
5210984 AAATTGAATC
*
5210994 AAATTAAGATTTAATGTATAAAATTACACA
1 AAATTAA-AGTTAATGTATAAAATTACACA
* * *
5211024 AAATTAAAGTTCATGTATAATATTGCACA
1 AAATTAAAGTTAATGTATAAAATTACACA
5211053 TCGAACCAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 18 0.72
30 7 0.28
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.34
Consensus pattern (29 bp):
AAATTAAAGTTAATGTATAAAATTACACA
Found at i:5215507 original size:159 final size:160
Alignment explanation
Indices: 5215197--5215525 Score: 448
Period size: 159 Copynumber: 2.1 Consensus size: 160
5215187 CTCATATCTG
*
5215197 TCATAGGT-CAACATAATTAATACGAATATAATTTTCAAAACTTTATTTTAATTGTATGAAATGT
1 TCATAGGTCCAACATAATTAATACGAATATAATTTTCAAAACTTTATTCTAATTGTATGAAATGT
* **
5215261 ATAGTACACAAAAAGAAAGTCATGAAAACAACAAAAAGGAGTCACAGAAATACAATTATTGGAAT
66 ACAGTACACAAAAAG--AGTCATGAAAACAACAAAAAAAAGTCACAGAAATACAATTATTGGAAT
5215326 TTTCAAATATTTTGATTTGATCATTATATCCA
129 TTTCAAATATTTTGATTTGATCATTATATCCA
* * *
5215358 TCATAGGTCCAACATAATTCATATGAATATCATTTTCAAAACTTTATTCTAATTGTATGAAATGT
1 TCATAGGTCCAACATAATTAATACGAATATAATTTTCAAAACTTTATTCTAATTGTATGAAATGT
* * * ** * *
5215423 GCAGTACACAAAATG-GTCATTAAAACAACAAAAAAAAGTCACAGAAATATTATT-TTTGATTTT
66 ACAGTACACAAAAAGAGTCATGAAAACAACAAAAAAAAGTCACAGAAATACAATTATTGGA-ATT
* * *
5215486 TTCGAATATTTTGATTTGATCATTTTATCTA
130 TTCAAATATTTTGATTTGATCATTATATCCA
*
5215517 TCACAGGTC
1 TCATAGGTC
5215526 AACCTATTTA
Statistics
Matches: 148, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
158 4 0.03
159 72 0.49
161 8 0.05
162 64 0.43
ACGTcount: A:0.41, C:0.12, G:0.11, T:0.35
Consensus pattern (160 bp):
TCATAGGTCCAACATAATTAATACGAATATAATTTTCAAAACTTTATTCTAATTGTATGAAATGT
ACAGTACACAAAAAGAGTCATGAAAACAACAAAAAAAAGTCACAGAAATACAATTATTGGAATTT
TCAAATATTTTGATTTGATCATTATATCCA
Found at i:5215766 original size:18 final size:19
Alignment explanation
Indices: 5215743--5215790 Score: 71
Period size: 18 Copynumber: 2.5 Consensus size: 19
5215733 TAAAAATTCT
5215743 AAAGATATAAACTAT-TAA
1 AAAGATATAAACTATCTAA
5215761 AAAGATATAAACTATCGTAA
1 AAAGATATAAACTATC-TAA
*
5215781 AAATATATAA
1 AAAGATATAA
5215791 TTTAATTCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
18 15 0.56
20 12 0.44
ACGTcount: A:0.60, C:0.06, G:0.06, T:0.27
Consensus pattern (19 bp):
AAAGATATAAACTATCTAA
Found at i:5225163 original size:20 final size:20
Alignment explanation
Indices: 5225114--5225163 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
5225104 ATCCTTTCTC
*
5225114 ATTATTTGAATAGTTATAAT
1 ATTATTTGAATAATTATAAT
**
5225134 ATTAGATGAATAATTATATAT
1 ATTATTTGAATAATTATA-AT
5225155 ATT-TTTGAA
1 ATTATTTGAA
5225164 GATGTTATAA
Statistics
Matches: 24, Mismatches: 5, Indels: 2
0.77 0.16 0.06
Matches are distributed among these distances:
20 19 0.79
21 5 0.21
ACGTcount: A:0.42, C:0.00, G:0.10, T:0.48
Consensus pattern (20 bp):
ATTATTTGAATAATTATAAT
Found at i:5236924 original size:29 final size:29
Alignment explanation
Indices: 5236891--5236946 Score: 103
Period size: 29 Copynumber: 1.9 Consensus size: 29
5236881 AACATTAGAC
*
5236891 AAATCAACAATTTGTGTATCCAAATTTTT
1 AAATCAACAATTTGTGTATACAAATTTTT
5236920 AAATCAACAATTTGTGTATACAAATTT
1 AAATCAACAATTTGTGTATACAAATTT
5236947 ATAACATATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.39
Consensus pattern (29 bp):
AAATCAACAATTTGTGTATACAAATTTTT
Found at i:5241006 original size:22 final size:21
Alignment explanation
Indices: 5240965--5241007 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
5240955 AAAATTAAAT
*
5240965 AAAAATATAATATCTGTTTAA
1 AAAAATATAATATATGTTTAA
5240986 AAAAATGATATATATAT-TTTAA
1 AAAAAT-ATA-ATATATGTTTAA
5241008 CAATTTAATC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 6 0.32
22 8 0.42
23 5 0.26
ACGTcount: A:0.53, C:0.02, G:0.05, T:0.40
Consensus pattern (21 bp):
AAAAATATAATATATGTTTAA
Found at i:5244017 original size:35 final size:35
Alignment explanation
Indices: 5243971--5244042 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
5243961 TATAGTAAAA
5243971 TTAAAAAAAGAAAAGGAAATTGAGGTTTTTGGCAT
1 TTAAAAAAAGAAAAGGAAATTGAGGTTTTTGGCAT
5244006 TTAAAAAAAGAAAAGGAAATTGAGGTTTTTGGCAT
1 TTAAAAAAAGAAAAGGAAATTGAGGTTTTTGGCAT
5244041 TT
1 TT
5244043 GCGATGCATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.44, C:0.03, G:0.22, T:0.31
Consensus pattern (35 bp):
TTAAAAAAAGAAAAGGAAATTGAGGTTTTTGGCAT
Found at i:5245477 original size:82 final size:82
Alignment explanation
Indices: 5245339--5245501 Score: 290
Period size: 82 Copynumber: 2.0 Consensus size: 82
5245329 TACCATTTTG
* *
5245339 ATGATATGGGTTTTTCTCAATAATATTGATTGACAAACTCTATTCTCAATAGTATGCTGGCTGCT
1 ATGATATGGGTTTTTCTCAATAATATTGATTGACAAACTCTATTCTCAATAATATGCTGGCTACT
5245404 TTGGAAAAACCGAAATA
66 TTGGAAAAACCGAAATA
*
5245421 ATGATATGGGTTTTTCTCAATAATATTGATTGACAAACTCTATTCTCAATAATATGCTGGTTACT
1 ATGATATGGGTTTTTCTCAATAATATTGATTGACAAACTCTATTCTCAATAATATGCTGGCTACT
*
5245486 TTGGAAAAATCGAAAT
66 TTGGAAAAACCGAAAT
5245502 CTTTTGAGTT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
82 77 1.00
ACGTcount: A:0.34, C:0.13, G:0.16, T:0.37
Consensus pattern (82 bp):
ATGATATGGGTTTTTCTCAATAATATTGATTGACAAACTCTATTCTCAATAATATGCTGGCTACT
TTGGAAAAACCGAAATA
Found at i:5248397 original size:69 final size:69
Alignment explanation
Indices: 5248276--5248680 Score: 336
Period size: 69 Copynumber: 5.9 Consensus size: 69
5248266 ATGCGGTTCT
* * ** ** * **
5248276 TTTTCTTGGAGTACATGTCGTTTATCGAGCAACTCTGGTGGTTCTTTGTGTCCA-AAACCAGGGG
1 TTTTCTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCTCTTCATGTCCAGAAA-CAGGGG
*
5248340 ACT-G
65 ACTCA
* * * *
5248344 TTTTCCTTGGAGTAGATGTTGTTTATCTAGAATTTCTGATGGCTCTTCATGTCCAGCAACAGGGG
1 TTTT-CTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCTCTTCATGTCCAGAAACAGGGG
* *
5248409 GCTCC
65 ACTCA
* * * * *
5248414 TTTTCTTGGAGTAGAAGTGGTTTATCTGGCATTTCTGACGG-TCCTTCATGTCCAGCAACAGTGG
1 TTTTCTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCT-CTTCATGTCCAGAAACAGGGG
*
5248478 ACTCC
65 ACTCA
* ** * * * *
5248483 TTTTCTTGGAGTAGACGGAGGTTATCTAGCCCTTTC-GACGGCTCTTCATGTCCAAAAATAGGGT
1 TTTTCTTGGAGTAGATGTCGTTTATCTAG-CATTTCTGACGGCTCTTCATGTCCAGAAACAGGG-
5248547 G-CTCA
64 GACTCA
** * * * *
5248552 ACTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGACGGCTCTTCATGTCCAGAAACA-TGGA
1 TTTTCTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCTCTTCATGTCCAGAAACAGGGGA
*
5248616 GCCCA
66 -CTCA
* * * * * *
5248621 TTTTCTCGGAGTCGATGCCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCAGCAACA
1 TTTTCTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCTCTTCATGTCCAGAAACA
5248681 TGAAGCTCAT
Statistics
Matches: 278, Mismatches: 49, Indels: 19
0.80 0.14 0.05
Matches are distributed among these distances:
67 1 0.00
68 11 0.04
69 253 0.91
70 13 0.05
ACGTcount: A:0.20, C:0.23, G:0.24, T:0.34
Consensus pattern (69 bp):
TTTTCTTGGAGTAGATGTCGTTTATCTAGCATTTCTGACGGCTCTTCATGTCCAGAAACAGGGGA
CTCA
Found at i:5248789 original size:117 final size:117
Alignment explanation
Indices: 5248576--5248812 Score: 282
Period size: 117 Copynumber: 2.0 Consensus size: 117
5248566 ACGTCGTTTA
*
5248576 TCTAGCATTTCCGACGGCTCTTCATGTCCAGAAACATGGAGCCCATTTTCTCGGAGTCGATGCCG
1 TCTAGCATTTCCGACGGCTCTTCATGTCCAGAAACATGGAGCCCATTTTCTCGGAGTCGACGCCG
** * * *
5248641 TTTATCTAGCATTTCCGAGGGCTCTTCATGTCCAGCAACATGAAGCTCATTT
66 TTTATCTAGCATTTCAAAGAGCTCTTCATGTCCAGCAACACGAAGCTCAATT
* * * ** * *
5248693 TCTAGCATTTTCGAGGGCTCTTCATGTCTA-ACAACATGGAGCTTAGTTTT-TTGGAGTCGACGT
1 TCTAGCATTTCCGACGGCTCTTCATGTCCAGA-AACATGGAGCCCA-TTTTCTCGGAGTCGACGC
* * *
5248756 CGTTTATCTAGCATTTCAAAGAGTTC-TCTATGTCTAGCAACACGGAGCTCAATT
64 CGTTTATCTAGCATTTCAAAGAGCTCTTC-ATGTCCAGCAACACGAAGCTCAATT
5248810 TCT
1 TCT
5248813 TGGAGTCTAA
Statistics
Matches: 101, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
116 3 0.03
117 94 0.93
118 4 0.04
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (117 bp):
TCTAGCATTTCCGACGGCTCTTCATGTCCAGAAACATGGAGCCCATTTTCTCGGAGTCGACGCCG
TTTATCTAGCATTTCAAAGAGCTCTTCATGTCCAGCAACACGAAGCTCAATT
Found at i:5248976 original size:129 final size:123
Alignment explanation
Indices: 5248809--5250713 Score: 1153
Period size: 129 Copynumber: 14.9 Consensus size: 123
5248799 GGAGCTCAAT
* * * * *
5248809 TTCTTGGAGTCTAAGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATGAACATTTTCTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAACATTTTCTT
* *
5248874 GGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATT
66 GGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC-AC---GA--TCATG
* * * * * *
5248938 TTCTTGGAGTCGATGTCTTTTATCTAGCATTTTTGAGGGCTC-TCTGTGTCCATCAACATTTTCC
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTC-ATGTCCATGAACATTTTCT
* * * * *
5249002 TCGAGTTGACGCCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCA--AT-ATG
65 TGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCATG
* * *
5249058 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
* * ** * * *
5249123 CTTTCTCTTGGAGTCGACGTATTTTATCTAGCTTTTTTGAGAGCCCTTCGTGTCCAT--CGAT-A
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCA
*
5249185 TA
122 TG
* * * * *
5249187 TTCTTTAAGTCGACGCCGTTTATCTAGCATTTCTGAGGGTTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
* * *
5249252 TTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTGCC-AAGGCTCTTCGTGTCCAT--CGAT-
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTT-CCGAGGGCTCTTCATGTCCATCACGATC
5249313 ATG
121 ATG
* * *
5249316 TTCTTTGAGTTGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
*
5249381 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCAT--CGAT-A
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCA
5249443 TG
122 TG
* * *
5249445 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
* ** *
5249510 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTGTTTGTGTCTAT--CGA-CA
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCA
5249572 TG
122 TG
* * *
5249574 TTCTTTGAGTTGACGT-TGTTTATCTAGCATTTCTAAGGGCTCTTTATGTCCATCAACTTGGAGC
1 TTCTTTGAGTCGACGTCT-TTTATCTAGCATTTCTGAGGGCTCTTCATGT-C--C-A--T-GA--
* * * * *
5249638 TCATTTTCTAGGAGTTGACGTCTTTTATCTAGCATTTCCGAGGACTTTTCATGTCCAT--CGAT-
56 ACATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATC
5249700 ATG
121 ATG
* * * *
5249703 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
** * **
5249768 CTTTCTCTTGGAGTAAACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCAT--CGAT-A
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCA
5249830 TG
122 TG
* *
5249832 TTCTTTGAGTAGACG-CTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGC
1 TTCTTTGAGTCGACGTCT-TTTATCTAGCATTTCTGAGGGCTCTTCATGT-C--C-A--T-GA--
* *
5249896 TCATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTG
56 ACATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC-AC---
5249961 GAGTTC-T-
117 GA--TCATG
** * * ** * *
5249968 TTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGGTTCTTTGTGTCCATCG-ATATGTT
1 TTCT-TT-GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCAT-GAACATTTT
* * * *
5250032 CTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC-
63 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC-AC---GA--TCA
5250096 T-
122 TG
* * * *
5250097 TTCTCTTGGAGTTGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCCTGTCCATCG-ATATGT
1 TTCT-TT-GAGTCGACGTCTTTTATCTAGCATTTCT-GAGGGCTCTTCATGTCCAT-GAACATTT
* * *
5250160 TCTTTGAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
62 TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC-AC---GA--TC
5250225 -T-
121 ATG
* * *
5250226 TTCTCTTGGAGTCGACGCCTTTTATCTAGCATTTCTGAGGGCTCTTCGTGTCCATTG-ACATGTT
1 TTCT-TT-GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCA-TGAACATTTT
* **
5250290 CTTGAAGTCGACG-CTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTC
63 CTTGGAGTCGACGTCT-TTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATC-AC---GA--TC
*
5250354 ATT
121 ATG
*** ** * *
5250357 TTCAAGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCGCGTCCATCG-ATATGTTCT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCAT-GAACATTTTCT
* * * ** *
5250421 TGGAGTCGATGCCGTTTATCTAGCATTTCTAAGGGTTCTTCATGTCCAT--C--T--TG
65 TGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCATG
** *
5250474 ------GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTGGTGTCCATCAACTTGGAGTT
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAAC----A---
* * * * * *
5250533 CTTTATCTTGGATTCGTCCTCTTTTATTTAGCATTTTCGAGGGCTCTTCATGTCCAT--TGA-CA
59 -TTT-TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCA
5250595 TG
122 TG
* * * * *
5250597 TTCTTGGAGTCGAAGCCATTTATCTAGCATTTCT-ACGGGCTGTTCATGTCCATCAACTTGGAGC
1 TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGGCTCTTCATGT-C--C-A--T-GA--
* * * *
5250661 TCATTTTCTAGGAGTCGACGTCGTTTATCTAGCATTTCCGATGGCTCTTCATG
56 ACATTTTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATG
5250714 CCCGGAAACA
Statistics
Matches: 1498, Mismatches: 181, Indels: 194
0.80 0.10 0.10
Matches are distributed among these distances:
111 46 0.03
115 1 0.00
117 1 0.00
119 3 0.00
120 92 0.06
121 3 0.00
122 1 0.00
123 4 0.00
124 2 0.00
125 1 0.00
126 2 0.00
128 15 0.01
129 1240 0.83
130 16 0.01
131 3 0.00
132 6 0.00
133 3 0.00
134 4 0.00
135 6 0.00
136 7 0.00
137 5 0.00
138 35 0.02
139 2 0.00
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (123 bp):
TTCTTTGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATGAACATTTTCTT
GGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCACGATCATG
Found at i:5249263 original size:387 final size:383
Alignment explanation
Indices: 5248870--5250710 Score: 1604
Period size: 387 Copynumber: 4.8 Consensus size: 383
5248860 ATGAACATTT
5248870 TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGGAGCTC
1 TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCAT---C---GA--T-
* * * * *
5248935 ATTTTCTTGGAGTCGATGTCTTTTATCTAGCATTTTTGAGGGCTC-TCTGTGTCCATCAAC-A-T
57 ATGTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTC-ATGTCCATCAACGAGT
* * * * *
5248997 -TTTC-C-TCGAGTTGACGCCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCAATATGT
121 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGT
5249059 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
186 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
* * ** * *
5249124 TTTCTCTTGGAGTCGACGTATTTTATCTAGCTTTTTTGAGAGCCCTTCGTGTCCATCGATATATT
251 TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATATT
* * * * *
5249189 CTTTAAGTCGACGCCGTTTATCTAGCATTTCTGAGGGTTCTTCATGTCCATCAACTTGGAGTTTT
316 CTTTGAGTCGACGTCGTTTATCTAGCATTTCTAAGGGTTCTTTATGTCCATCAACTTGGAGTATT
5249254 TTC
381 TTC
* * * *
5249257 TCTTGGAGTTGACGTCTTTTATCTAGCATTTGCC-AAGGCTCTTCGTGTCCATCGATATGTTCTT
1 TCTTGGAGTCGACGTCGTTTATCTAGCATTT-CCGAGGGCTCTTCATGTCCATCGATATGTTCTT
* *
5249321 TGAGTTGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTC
65 GGAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC---GAG-TCTTTC
* *
5249386 TCTTGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCGATATGTTCTTT
126 TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTT
5249451 GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
191 GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* * * * *
5249516 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTGTTTGTGTCTATCGACATGTTCTTTG
256 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATATTCTTTG
* * *
5249581 AGTTGACGTTGTTTATCTAGCATTTCTAAGGGCTCTTTATGTCCATCAACTTGGAGCTCA-TTT-
321 AGTCGACGTCGTTTATCTAGCATTTCTAAGGGTTCTTTATGTCCATCAACTTGGAG-T-ATTTTC
* * * * * *
5249644 TCTAGGAGTTGACGTCTTTTATCTAGCATTTCCGAGGACTTTTCATGTCCATCGATATGTTCTTT
1 TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTG
* *
5249709 GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTCTTTCT
66 GAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC---GAG-TCTTTCT
** * ** *
5249774 CTTGGAGTAAACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTTCTTTG
127 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTG
* * * *
5249839 AGTAGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTT-T
192 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTCT
* * * *
5249903 CTAGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGGAGTTCT
256 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGA--T--A--T-A
* * *
5249968 TTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAA-GGTTCTTTGTGTCCAT---C---GA
314 TTCT-TT-GAGTCGACGTCGTTTATCTAGCATTT-CTAAGGGTTCTTTATGTCCATCAACTTGGA
*
5250026 -TATGTTC
376 GTATTTTC
* * *
5250033 T-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
1 TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCAT---C---GA--TA
* * * *
5250096 TTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCCTGTCCAT---CGA-T
58 TGT-TCTTGGAGTCGACGTCGTTTATCTAGCATTTCT-GAGGGCTCTTCATGTCCATCAACGAGT
* * *
5250156 ATGTTCT-TT-GAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTG
121 CT-TTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAA--T-
* * *
5250219 GAGTTCTTTCTCTTGGAGTCGACGCCTTTTATCTAGCATTTCTGAGGGCTCTTCGTGT-C--C-A
182 -A--T-GTTCT-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAA
* * ** *
5250280 -TT-GA---CATGT-TCTTGAAGTCGACG-CTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTC
241 CTTGGAGTTC-TTTCTCTTGGAGTCGACGTCT-TTTATCTAGCATTTCCGAGGGCTCTTCGTGTC
* * * * * *
5250338 CATCAACTTGGAGCTCATT-TTCAAGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTC
304 CATCGA--T--A--T-ATTCTT---TGAGTCGACGTCGTTTATCTAGCATTTCTAAGGGTTCTTT
** *
5250402 GCGTCCAT---C---GA-TA-TGT-
359 ATGTCCATCAACTTGGAGTATTTTC
* * ** *
5250418 TCTTGGAGTCGATGCCGTTTATCTAGCATTTCTAAGGGTTCTTCATGT-C--C---A---TCTTG
1 TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTG
* ** *
5250474 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTGGTGTCCATCAACTTGGAGTTCTTTAT
66 GAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC---GAG-TCTTTCT
* * * * * ** * *
5250539 CTTGGATTCGTCCTCTTTTATTTAGCATTTTCGAGGGCTCTTCATGTCCATTGACATGTTCTTGG
127 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTG
* * * *
5250604 AGTCGAAGCCATTTATCTAGCATTTCT-ACGGGCTGTTCATGTCCATCAACTTGGAGCTCATTT-
192 AGTCGACGCCGTTTATCTAGCATTTCTGA-GGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTC
* * *
5250667 TCTAGGAGTCGACGTCGTTTATCTAGCATTTCCGATGGCTCTTC
255 TCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTC
5250711 ATGCCCGGAA
Statistics
Matches: 1231, Mismatches: 147, Indels: 161
0.80 0.10 0.10
Matches are distributed among these distances:
368 1 0.00
369 84 0.07
370 3 0.00
371 4 0.00
372 3 0.00
373 1 0.00
374 3 0.00
375 4 0.00
376 3 0.00
377 4 0.00
378 131 0.11
379 4 0.00
381 3 0.00
382 1 0.00
384 2 0.00
385 6 0.00
386 12 0.01
387 781 0.63
388 17 0.01
389 6 0.00
390 7 0.01
391 4 0.00
392 1 0.00
393 7 0.01
394 8 0.01
395 9 0.01
396 119 0.10
397 3 0.00
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (383 bp):
TCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCGATATGTTCTTG
GAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACGAGTCTTTCTCTTG
GAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAATATGTTCTTTGAGTC
GACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCTTGG
AGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCGTGTCCATCGATATATTCTTTGAGTCG
ACGTCGTTTATCTAGCATTTCTAAGGGTTCTTTATGTCCATCAACTTGGAGTATTTTC
Found at i:5249278 original size:258 final size:257
Alignment explanation
Indices: 5248865--5250713 Score: 1576
Period size: 258 Copynumber: 7.2 Consensus size: 257
5248855 TGTCCATGAA
* * *
5248865 CATTTTCTTGGAGTCGACGTCGTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGG
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATGTCCAT---C---G
* * * * * * *
5248930 AGCTCATTTTCTTGGAGTCGATGTCTTTTATCTAGCATTTTTGAGGGCTC-TCTGTGTCCATCAA
59 A--T-ATGTTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTC-ATGTCCATCAA
* *
5248994 C----A--T-TTTC-C-TCGAGTTGACGCCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCA
120 CTTGGAGTTCTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCA
* *
5249050 TCAATATGTTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC
185 TCGATATGTTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC
*
5249115 TTGGAGTT
250 TTGGAGCT
* * * * * * *
5249123 C-TTTCTCTTGGAGTCGACGTATTTTATCTAGCTTTTTTGAGAGCCCTTCGTGTCCATCGATATA
1 CATTT-TCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGAG-GCTCTTCATGTCCATCGATATG
* *
5249187 TTCTTTAAGTCGACGCCGTTTATCTAGCATTTCTGAGGGTTCTTCATGTCCATCAACTTGGAGTT
64 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
*
5249252 TTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTGCCAA-GGCTCTTCGTGTCCATCGATATG
129 CTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTT-CCAAGGGCTCTTCGTGTCCATCGATATG
* *
5249316 TTCTTTGAGTTGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
193 TTCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
*
5249381 C-TTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCGATATG
1 CATTT-TCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATGTCCATCGATATG
5249445 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
64 TTCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTT
* * * * * *
5249510 CTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTGTTTGTGTCTATCGACATGT
129 CTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCGATATGT
** * *
5249575 TCTTTGAGTTGACGTTGTTTATCTAGCATTTCTAAGGGCTCTTTATGTCCATCAACTTGGAGCT
194 TCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
* * *
5249639 CATTTTCTAGGAGTTGACGTCTTTTATCTAGCATTTCCGAGGACTTTTCATGTCCATCGATATGT
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGAGG-CTCTTCATGTCCATCGATATGT
*
5249704 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTC
65 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
** * * *
5249769 TTTCTCTTGGAGTAAACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTT
130 TTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCGATATGTT
* * *
5249834 CTTTGAGTAGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
195 CTTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
* *
5249897 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGG
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATGTCCATCGA--T--
* * * ** * * ** *
5249962 AGTTCTTTCTCTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGGTTCTTTGTGTCCATCGA-
61 A--T-GTTCT-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC
* * * * ** *
5250026 -T--A--T-GTTCT-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCAT
121 TTGGAGTTCTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCAT
* * * * *
5250083 CAACTTGGAGTTCTTTCTCTTGGAGTTGACGTCTTTTATCTAGCATTT-TCGAGGGCTCTTCCTG
186 CGA--T--A--T-GTTCT-TT-GAGTTGACGCCGTTTATCTAGCATTTCT-GAGGGCTCTTCATG
5250147 TCCAT---C---GA--T
241 TCCATCAACTTGGAGCT
* ** * *
5250156 -ATGTTCTTTGAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGG
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATGTCCATCGA--T--
* * *
5250220 AGTTCTTTCTCTTGGAGTCGACGCCTTTTATCTAGCATTTCTGAGGGCTCTTCGTGT-C--C-A-
61 A--T-GTTCT-TT-GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAAC
* * * *** *
5250280 TT-GA---CATGT-TCTTGAAGTCGACG-CTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCC
121 TTGGAGTTC-TTTCTCTTGGAGTTGACGTCT-TTTATCTAGCATTTCCAAGGGCTCTTCGTGTCC
* * * * * *
5250339 ATCAACT-TGGAGCTCATTTTCAAGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCG
184 ATCGA-TAT---GTTC--TTT----GAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCA
*
5250403 CGTCCAT---C---GA--T
239 TGTCCATCAACTTGGAGCT
* * * * * * *
5250414 -ATGTTCTTGGAGTCGATGCCGTTTATCTAGCATTTCTAAGGGTTCTTCATGTCCATC--T-TG-
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATGTCCATCGATATGT
* * **
5250474 -----GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTGGTGTCCATCAACTTGGAGTTC
65 TCTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC
* * * * * * * * *
5250534 TTTATCTTGGA-TTCGTCCTCTTTTATTTAGCATTTTCGAGGGCTCTTCATGTCCATTGACATGT
130 TTTCTCTTGGAGTT-GACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCGATATGT
* * * * *
5250598 TCTTGGAGTCGAAGCCATTTATCTAGCATTTCT-ACGGGCTGTTCATGTCCATCAACTTGGAGCT
194 TCTTTGAGTTGACGCCGTTTATCTAGCATTTCTGA-GGGCTCTTCATGTCCATCAACTTGGAGCT
* *
5250662 CATTTTCTAGGAGTCGACGTCGTTTATCTAGCATTTCCGATGGCTCTTCATG
1 CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGA-GGCTCTTCATG
5250714 CCCGGAAACA
Statistics
Matches: 1373, Mismatches: 143, Indels: 159
0.82 0.09 0.09
Matches are distributed among these distances:
239 1 0.00
240 80 0.06
241 1 0.00
243 2 0.00
244 3 0.00
245 2 0.00
246 7 0.01
248 4 0.00
249 136 0.10
250 5 0.00
252 3 0.00
253 1 0.00
254 4 0.00
255 6 0.00
256 7 0.01
257 16 0.01
258 972 0.71
259 14 0.01
260 6 0.00
261 3 0.00
262 2 0.00
263 1 0.00
264 3 0.00
265 9 0.01
266 5 0.00
267 80 0.06
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (257 bp):
CATTTTCTAGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGCTCTTCATGTCCATCGATATGTT
CTTTGAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCT
TTCTCTTGGAGTTGACGTCTTTTATCTAGCATTTCCAAGGGCTCTTCGTGTCCATCGATATGTTC
TTTGAGTTGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCT
Found at i:5249925 original size:456 final size:454
Alignment explanation
Indices: 5249451--5250710 Score: 1749
Period size: 456 Copynumber: 2.8 Consensus size: 454
5249441 TATGTTCTTT
* *
5249451 GAGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
1 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* *
5249516 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTGTTTGTGTCTATCGACATGTTCTTTG
66 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGG-TGTTTGTGTC-ATCGACATGTTCTTTG
* * * *
5249581 AGTTGACGTTGTTTATCTAGCATTTCTAAGGGCTCTTTATGTCCATCAACTTGGAGCTCATTT-T
129 AGTCGACGTTGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTC-TTTAT
* * * *
5249645 CTAGGAGTTGACGTCTTTTATCTAGCATTTCCGAGGACTTTTCATGTCCATCGATATGTTCTTTG
193 CTTGGAGTTGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCATGTCCATCGATATGTTCTTTG
5249710 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTCTTTCTC
258 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTCTTTCTC
** * *
5249775 TTGGAGTAAACGTCTTTTATCTAGCATTTTCGAGGGCTCTTTGTGTCCATCGATATGTTCTTTG-
323 TTGGAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGACATGTTC-TTGA
5249839 AGTAGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTC
387 AGTAGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTC
*
5249904 TAG
452 AAG
*
5249907 GAGTCGACGTCTTTTATCTAGCATTTCCGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
1 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* *
5249972 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGGTTCTTTGTGTCCATCGATATGTTCTTTG
66 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGG-TGTTTGTGT-CATCGACATGTTCTTTG
** *
5250037 AGTCGACGCCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTC
129 AGTCGACGTTGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTATC
*
5250102 TTGGAGTTGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCCTGTCCATCGATATGTTCTTTGA
194 TTGGAGTTGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCATGTCCATCGATATGTTCTTTGA
* *
5250167 GTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCTCT
259 GTCGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTCTTTCTCT
* *
5250232 TGGAGTCGACGCCTTTTATCTAGCA-TTTCTGAGGGCTCTTCGTGTCCATTGACATGTTCTTGAA
324 TGGAGTCGACGTCTTTTATCTAGCATTTTC-GAGGGCTCTTCGTGTCCATCGACATGTTCTTGAA
*
5250296 GTCGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCA
388 GTAGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCA
5250361 AG
453 AG
** * *
5250363 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCGCGTCCAT---C---GA--TATGT-T
1 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
* * * * * * *
5250419 CTTGGAGTCGATGCCGTTTATCTAGCATTT-CTAAGG-G-TTCT-TCAT-GTCCA---TCTTGGA
66 CTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGGTGTTTGTGTCATCG-ACATGTTCTTTGA
**
5250476 GTCGACGTCT-TTTATCTAGCATTTCTGAGGGCTCTTGGTGTCCATCAACTTGGAGTTCTTTATC
130 GTCGACGT-TGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTATC
* * * * * *
5250540 TTGGA-TTCGTCCTCTTTTATTTAGCATTTTCGAGGGCTCTTCATGTCCATTGACATGTTCTTGG
194 TTGGAGTT-GACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCATGTCCATCGATATGTTCTTTG
* * *
5250604 AGTCGAAGCCATTTATCTAGCATTTCT-ACGGGCTGTTCATGTCCATCAACTTGGAGCTCATTT-
258 AGTCGACGCCGTTTATCTAGCATTTCTGA-GGGCTGTTCATGTCCATCAACTTGGAGTTC-TTTC
* * * *
5250667 TCTAGGAGTCGACGTCGTTTATCTAGCATTTCCGATGGCTCTTC
321 TCTTGGAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTC
5250711 ATGCCCGGAA
Statistics
Matches: 729, Mismatches: 65, Indels: 38
0.88 0.08 0.05
Matches are distributed among these distances:
437 3 0.00
438 205 0.28
439 6 0.01
440 1 0.00
441 4 0.01
442 1 0.00
443 3 0.00
446 5 0.01
447 28 0.04
448 3 0.00
450 2 0.00
453 1 0.00
455 10 0.01
456 456 0.63
457 1 0.00
ACGTcount: A:0.17, C:0.22, G:0.21, T:0.40
Consensus pattern (454 bp):
GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
CTTGGAGTCGACGTCTTTTATCTAGCATTTCCCAAGGTGTTTGTGTCATCGACATGTTCTTTGAG
TCGACGTTGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTATCTT
GGAGTTGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCATGTCCATCGATATGTTCTTTGAGT
CGACGCCGTTTATCTAGCATTTCTGAGGGCTGTTCATGTCCATCAACTTGGAGTTCTTTCTCTTG
GAGTCGACGTCTTTTATCTAGCATTTTCGAGGGCTCTTCGTGTCCATCGACATGTTCTTGAAGTA
GACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCAAG
Found at i:5250494 original size:51 final size:51
Alignment explanation
Indices: 5250418--5250521 Score: 145
Period size: 51 Copynumber: 2.0 Consensus size: 51
5250408 ATCGATATGT
* *
5250418 TCTTGGAGTCGATGCCGTTTATCTAGCATTTCTAAGGGTTCTTCATGTCCA
1 TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTCTTCATGTCCA
* * * **
5250469 TCTTGGAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTGGTGTCCA
1 TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTCTTCATGTCCA
5250520 TC
1 TC
5250522 AACTTGGAGT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 46 1.00
ACGTcount: A:0.15, C:0.22, G:0.23, T:0.39
Consensus pattern (51 bp):
TCTTGGAGTCGACGCCGTTTATCTAGCATTTCTAAGGGCTCTTCATGTCCA
Found at i:5250600 original size:180 final size:180
Alignment explanation
Indices: 5250165--5250650 Score: 501
Period size: 180 Copynumber: 2.6 Consensus size: 180
5250155 TATGTTCTTT
* * * * *
5250165 GAGTCGACGTCGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGTTCTTTCT
1 GAGTCGACCTCTTTTATCTAGCATTTCTGAGGGCTCTTCACGTCCATCGAC----A----TGT-T
* * * *
5250230 CTTGGAGTCGACGCCTTTTATCTAGCATTTCTGAGGGCTCTTCGTGTCCATTGACATGTTCTTGA
57 CTTGGAGTCGAAGCCATTTATCTAGCATTTCTAAGGGCTCTTCATGT-C-----CA---TCTTGA
*
5250295 AGTCGACGCTGTTTATCTAGCATTTTTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTC
113 AGTCGACGCTGTTTATCTAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTC
5250360 AAG
178 AAG
* * *
5250363 GAGTCGACGTCTTTTATCTAGCATTTCTGAGGGCTCTTCGCGTCCATCGATATGTTCTTGGAGTC
1 GAGTCGACCTCTTTTATCTAGCATTTCTGAGGGCTCTTCACGTCCATCGACATGTTCTTGGAGTC
* * * *
5250428 GATGCCGTTTATCTAGCATTTCTAAGGGTTCTTCATGTCCATCTTGGAGTCGACGTCT-TTTATC
66 GAAGCCATTTATCTAGCATTTCTAAGGGCTCTTCATGTCCATCTTGAAGTCGACG-CTGTTTATC
** * **
5250492 TAGCATTTCTGAGGGCTCTTGGTGTCCATCAACTTGGAGTTC-TTTATCTTG
130 TAGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTT-TCAAG
* * * * *
5250543 GATTCGTCCTCTTTTATTTAGCATTT-TCGAGGGCTCTTCATGTCCATTGACATGTTCTTGGAGT
1 GAGTCGACCTCTTTTATCTAGCATTTCT-GAGGGCTCTTCACGTCCATCGACATGTTCTTGGAGT
* *
5250607 CGAAGCCATTTATCTAGCATTTCTACGGGCTGTTCATGTCCATC
65 CGAAGCCATTTATCTAGCATTTCTAAGGGCTCTTCATGTCCATC
5250651 AACTTGGAGC
Statistics
Matches: 254, Mismatches: 31, Indels: 24
0.82 0.10 0.08
Matches are distributed among these distances:
179 4 0.02
180 153 0.60
181 2 0.01
183 2 0.01
188 1 0.00
189 43 0.17
190 2 0.01
194 1 0.00
198 46 0.18
ACGTcount: A:0.17, C:0.22, G:0.22, T:0.39
Consensus pattern (180 bp):
GAGTCGACCTCTTTTATCTAGCATTTCTGAGGGCTCTTCACGTCCATCGACATGTTCTTGGAGTC
GAAGCCATTTATCTAGCATTTCTAAGGGCTCTTCATGTCCATCTTGAAGTCGACGCTGTTTATCT
AGCATTTCTGAGGGCTCTTCATGTCCATCAACTTGGAGCTCATTTTCAAG
Found at i:5250814 original size:123 final size:123
Alignment explanation
Indices: 5250640--5250885 Score: 323
Period size: 123 Copynumber: 2.0 Consensus size: 123
5250630 TACGGGCTGT
* * * *
5250640 TCATGTCCATCAACTTGGAGCTCATTTTCTAGGAGTCGACGTCGTTTATCTAGCATTTCCGATGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTAGGAGTCGACGTCGTTGATCTAGCATTTCCGAGGG
* * ** *
5250705 CTCTTCATGCCCGGAAACACGGAGTTTGTTTTCTTGGAGTCGACTTCGTTTATCTAGC
66 CTCTTCATGCCCAGAAACACGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATCTAGC
* * * *
5250763 TCATTTCCAGCAACATGGAGCTCATTTTCTTGGAGTTGACG-CTGTTGATCTAGTATTTCCGAGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTAGGAGTCGACGTC-GTTGATCTAGCATTTCCGAGG
* ** *
5250827 GCTCTTCATGTCCATCAACATGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATCTAGC
65 GCTCTTCATGCCCAGAAACACGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATCTAGC
5250886 ACTTCCGATG
Statistics
Matches: 105, Mismatches: 17, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
122 1 0.01
123 104 0.99
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (123 bp):
TCATGTCCAGCAACATGGAGCTCATTTTCTAGGAGTCGACGTCGTTGATCTAGCATTTCCGAGGG
CTCTTCATGCCCAGAAACACGGAGCTCATTTTCTTGGAGTCGACGTCGTTTATCTAGC
Found at i:5250859 original size:69 final size:69
Alignment explanation
Indices: 5250763--5251139 Score: 322
Period size: 69 Copynumber: 5.5 Consensus size: 69
5250753 TTTATCTAGC
* * * *
5250763 TCATTTCCAGCAACATGGAGCTCATTTTCTTGGAGTTGACGCTGTTGATCTAGTATTTCCGAGGG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTTGACGCTGTTTATCTAGCATTTCCGACGG
5250828 CTCT
66 CTCT
* * * *
5250832 TCATGTCCATCAACATGGAGCTCATTTTCTTGGAGTCGACG-TCGTTTATCTAGCACTTCCGATG
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTTGACGCT-GTTTATCTAGCATTTCCGACG
5250896 GCTCT
65 GCTCT
* * *
5250901 TCATGTCCGGCAACATGGAGCTCATTTTCTTTG-TTTCGAC-CTTGTTTATCTAGCATTTCCGAC
1 TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTT-GACGC-TGTTTATCTAGCATTTCCGAC
5250964 GGCTCT
64 GGCTCT
* * * ** * * *
5250970 TCATCTCCAGGAACATGTG-GCTC-TTTTCCTTGCAGGAGA-GGTAGTTGATCTAGCATTTCTGA
1 TCATGTCCAGCAACATG-GAGCTCATTTT-CTTGGAGTTGACGCT-GTTTATCTAGCATTTCCGA
*
5251032 CGGTTCT
63 CGGCTCT
** * * * * * * *
5251039 TTGTGTCCAGCGACA-GGTGGCTCTTTTTCTTGGAGTAGA-GATCGTTTATTTAGCATTTCAGAC
1 TCATGTCCAGCAACATGG-AGCTCATTTTCTTGGAGTTGACGCT-GTTTATCTAGCATTTCCGAC
*
5251102 GGTTCT
64 GGCTCT
* *
5251108 TCATGTCCAGCAACA-GGCGGCTCTTTTTCTTG
1 TCATGTCCAGCAACATGG-AGCTCATTTTCTTG
5251140 AAGAAAACGA
Statistics
Matches: 254, Mismatches: 42, Indels: 24
0.79 0.13 0.08
Matches are distributed among these distances:
67 1 0.00
68 8 0.03
69 239 0.94
70 6 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (69 bp):
TCATGTCCAGCAACATGGAGCTCATTTTCTTGGAGTTGACGCTGTTTATCTAGCATTTCCGACGG
CTCT
Found at i:5253057 original size:22 final size:20
Alignment explanation
Indices: 5253032--5253071 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
5253022 GTTAATTTTA
5253032 GCATTTAGATTAGTTTTTTATT
1 GCATTT-GA-TAGTTTTTTATT
*
5253054 GCATTTTATAGTTTTTTA
1 GCATTTGATAGTTTTTTA
5253072 AATTAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 1 0.06
22 6 0.35
ACGTcount: A:0.23, C:0.05, G:0.12, T:0.60
Consensus pattern (20 bp):
GCATTTGATAGTTTTTTATT
Found at i:5257035 original size:79 final size:79
Alignment explanation
Indices: 5256944--5257098 Score: 301
Period size: 79 Copynumber: 2.0 Consensus size: 79
5256934 ACATATTAAT
*
5256944 GTTTAGGGCATGGTGTTGGATAAATGGTAGAATAGATTGCAATGACTTTGCCCTGCATTTTTCTC
1 GTTTAGGGCATGGTGTTGGATAAATGGTAGAATAGATCGCAATGACTTTGCCCTGCATTTTTCTC
5257009 TAACCTTTTCCATG
66 TAACCTTTTCCATG
5257023 GTTTAGGGCATGGTGTTGGATAAATGGTAGAATAGATCGCAATGACTTTGCCCTGCATTTTTCTC
1 GTTTAGGGCATGGTGTTGGATAAATGGTAGAATAGATCGCAATGACTTTGCCCTGCATTTTTCTC
5257088 TAACCTTTTCC
66 TAACCTTTTCC
5257099 CTTCTTCAAC
Statistics
Matches: 75, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
79 75 1.00
ACGTcount: A:0.23, C:0.17, G:0.23, T:0.37
Consensus pattern (79 bp):
GTTTAGGGCATGGTGTTGGATAAATGGTAGAATAGATCGCAATGACTTTGCCCTGCATTTTTCTC
TAACCTTTTCCATG
Found at i:5258485 original size:30 final size:31
Alignment explanation
Indices: 5258440--5258497 Score: 109
Period size: 30 Copynumber: 1.9 Consensus size: 31
5258430 CCCGACTCAC
5258440 TTGTATTATTTTTTTAAGATTATTTTTAAAT
1 TTGTATTATTTTTTTAAGATTATTTTTAAAT
5258471 TTGTATTA-TTTTTTAAGATTATTTTTA
1 TTGTATTATTTTTTTAAGATTATTTTTA
5258498 CATAAAATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
30 19 0.70
31 8 0.30
ACGTcount: A:0.28, C:0.00, G:0.07, T:0.66
Consensus pattern (31 bp):
TTGTATTATTTTTTTAAGATTATTTTTAAAT
Found at i:5263601 original size:17 final size:17
Alignment explanation
Indices: 5263579--5263612 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
5263569 ATTTGATTTG
* *
5263579 ATTTAACCAAAATATAA
1 ATTTAACAAAAAGATAA
5263596 ATTTAACAAAAAGATAA
1 ATTTAACAAAAAGATAA
5263613 TCTCATTCAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (17 bp):
ATTTAACAAAAAGATAA
Found at i:5272506 original size:21 final size:21
Alignment explanation
Indices: 5272467--5272506 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
5272457 CATATTTAAG
5272467 AATTAAAAAGTTTTAAAATTT
1 AATTAAAAAGTTTTAAAATTT
*
5272488 AATTATAAA-TTTTATAAAT
1 AATTAAAAAGTTTTA-AAAT
5272507 GCTAGAGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (21 bp):
AATTAAAAAGTTTTAAAATTT
Found at i:5282248 original size:2 final size:2
Alignment explanation
Indices: 5282241--5282266 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
5282231 TTTTGGTCAT
5282241 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
5282267 CAATGCTTAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:5288140 original size:31 final size:29
Alignment explanation
Indices: 5288102--5288181 Score: 81
Period size: 29 Copynumber: 2.7 Consensus size: 29
5288092 ATACCAAAAC
5288102 TATACATGAACTATTG-TTTAATGTGCAATTG
1 TATACATGAA-TATTGATTT--TGTGCAATTG
* *
5288133 TATACATGAATTTTGATTTTGTGCAATTT
1 TATACATGAATATTGATTTTGTGCAATTG
* *
5288162 TATACAAGAAATTTTGATTT
1 TATACATG-AATATTGATTT
5288182 GATCCAATTC
Statistics
Matches: 44, Mismatches: 3, Indels: 5
0.85 0.06 0.10
Matches are distributed among these distances:
29 16 0.36
30 15 0.34
31 13 0.30
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46
Consensus pattern (29 bp):
TATACATGAATATTGATTTTGTGCAATTG
Found at i:5288165 original size:29 final size:30
Alignment explanation
Indices: 5288123--5288181 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 30
5288113 TATTGTTTAA
*
5288123 TGTGCAATTGTATACATG-AATTTTGATTT
1 TGTGCAATTGTATACAAGAAATTTTGATTT
*
5288152 TGTGCAATTTTATACAAGAAATTTTGATTT
1 TGTGCAATTGTATACAAGAAATTTTGATTT
5288182 GATCCAATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 16 0.59
30 11 0.41
ACGTcount: A:0.31, C:0.07, G:0.15, T:0.47
Consensus pattern (30 bp):
TGTGCAATTGTATACAAGAAATTTTGATTT
Found at i:5288190 original size:30 final size:29
Alignment explanation
Indices: 5288127--5288190 Score: 76
Period size: 29 Copynumber: 2.2 Consensus size: 29
5288117 GTTTAATGTG
* *
5288127 CAATTGTATACATGAATTTTGATTTTGTG
1 CAATTGTATACAAGAATTTTGATTTTGTC
*
5288156 CAATTTTATACAAGAAATTTTGA-TTTGATC
1 CAATTGTATACAAG-AATTTTGATTTTG-TC
5288186 CAATT
1 CAATT
5288191 CTTGTAAATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
29 16 0.53
30 14 0.47
ACGTcount: A:0.33, C:0.09, G:0.12, T:0.45
Consensus pattern (29 bp):
CAATTGTATACAAGAATTTTGATTTTGTC
Found at i:5288397 original size:29 final size:31
Alignment explanation
Indices: 5288338--5288407 Score: 90
Period size: 29 Copynumber: 2.3 Consensus size: 31
5288328 AAAATTTTAA
* * *
5288338 GTATACATTTAAACCACAATTAGAGCTTCAT
1 GTATACAATTATACCACAATTAAAGCTTCAT
*
5288369 GTATATAATTATACCA-AATTAAAG-TTCAT
1 GTATACAATTATACCACAATTAAAGCTTCAT
5288398 GTATACAATT
1 GTATACAATT
5288408 GTACATTAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
29 14 0.41
30 7 0.21
31 13 0.38
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (31 bp):
GTATACAATTATACCACAATTAAAGCTTCAT
Found at i:5289152 original size:22 final size:23
Alignment explanation
Indices: 5289096--5289152 Score: 55
Period size: 22 Copynumber: 2.5 Consensus size: 23
5289086 CATATTTTTT
*
5289096 AAAAATTATAGAA-AAAATTCTAA
1 AAAAAATATA-AAGAAAATTCTAA
* *
5289119 AGAATATATAAAGAAAATT-TAA
1 AAAAAATATAAAGAAAATTCTAA
*
5289141 AAAAAATCTAAA
1 AAAAAATATAAA
5289153 ATAATAATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 3
0.75 0.17 0.08
Matches are distributed among these distances:
22 14 0.52
23 13 0.48
ACGTcount: A:0.67, C:0.04, G:0.05, T:0.25
Consensus pattern (23 bp):
AAAAAATATAAAGAAAATTCTAA
Found at i:5294017 original size:29 final size:29
Alignment explanation
Indices: 5293977--5294035 Score: 118
Period size: 29 Copynumber: 2.0 Consensus size: 29
5293967 TTGTAAAAGT
5293977 AAAAATCTATGTATGTGTATATATAACAA
1 AAAAATCTATGTATGTGTATATATAACAA
5294006 AAAAATCTATGTATGTGTATATATAACAA
1 AAAAATCTATGTATGTGTATATATAACAA
5294035 A
1 A
5294036 GTTTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (29 bp):
AAAAATCTATGTATGTGTATATATAACAA
Found at i:5294276 original size:16 final size:16
Alignment explanation
Indices: 5294257--5294290 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5294247 ATATTTTATA
5294257 ATTTATGTATACATAT
1 ATTTATGTATACATAT
*
5294273 ATTTATGTCTACATAT
1 ATTTATGTATACATAT
5294289 AT
1 AT
5294291 ATTTTTAATC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (16 bp):
ATTTATGTATACATAT
Found at i:5295646 original size:15 final size:16
Alignment explanation
Indices: 5295626--5295655 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
5295616 TTATGGTATG
5295626 GTTTGGG-TATTGGGA
1 GTTTGGGCTATTGGGA
5295641 GTTTGGGCTATTGGG
1 GTTTGGGCTATTGGG
5295656 TAAATTTGGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.10, C:0.03, G:0.47, T:0.40
Consensus pattern (16 bp):
GTTTGGGCTATTGGGA
Found at i:5296578 original size:8 final size:8
Alignment explanation
Indices: 5296565--5296626 Score: 70
Period size: 8 Copynumber: 7.4 Consensus size: 8
5296555 TTTTAAAACT
5296565 TTTAAAAA
1 TTTAAAAA
5296573 TTTAAAATA
1 TTTAAAA-A
*
5296582 TTTTAAAA
1 TTTAAAAA
5296590 TTTAAAAAAA
1 TTT--AAAAA
*
5296600 TTTAGAAA
1 TTTAAAAA
*
5296608 TTTAAAAC
1 TTTAAAAA
5296616 TTTAAAAA
1 TTTAAAAA
5296624 TTT
1 TTT
5296627 CCAGAAATTA
Statistics
Matches: 45, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
8 31 0.69
9 7 0.16
10 7 0.16
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (8 bp):
TTTAAAAA
Found at i:5296585 original size:18 final size:17
Alignment explanation
Indices: 5296556--5296626 Score: 74
Period size: 17 Copynumber: 4.2 Consensus size: 17
5296546 TATGTCACAT
*
5296556 TTTAAAACTTTTAAAAA
1 TTTAAAAATTTTAAAAA
5296573 TTTAAAATATTTT-AAAA
1 TTTAAAA-ATTTTAAAAA
* *
5296590 TTTAAAAAAATTTAGAAA
1 TTT-AAAAATTTTAAAAA
*
5296608 TTT-AAAACTTTAAAAA
1 TTTAAAAATTTTAAAAA
5296624 TTT
1 TTT
5296627 CCAGAAATTA
Statistics
Matches: 46, Mismatches: 5, Indels: 7
0.79 0.09 0.12
Matches are distributed among these distances:
16 14 0.30
17 18 0.39
18 14 0.30
ACGTcount: A:0.54, C:0.03, G:0.01, T:0.42
Consensus pattern (17 bp):
TTTAAAAATTTTAAAAA
Found at i:5296586 original size:10 final size:9
Alignment explanation
Indices: 5296554--5296626 Score: 64
Period size: 9 Copynumber: 8.4 Consensus size: 9
5296544 TATATGTCAC
5296554 ATTTTAAAA
1 ATTTTAAAA
*
5296563 CTTTTAAAA
1 ATTTTAAAA
5296572 A-TTTAAAA
1 ATTTTAAAA
5296580 TATTTT-AAA
1 -ATTTTAAAA
*
5296589 ATTTAAAAA
1 ATTTTAAAA
* *
5296598 AATTTAGAA
1 ATTTTAAAA
5296607 A-TTT-AAA
1 ATTTTAAAA
*
5296614 ACTTTAAAA
1 ATTTTAAAA
5296623 ATTT
1 ATTT
5296627 CCAGAAATTA
Statistics
Matches: 51, Mismatches: 8, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
7 3 0.06
8 17 0.33
9 28 0.55
10 3 0.06
ACGTcount: A:0.53, C:0.03, G:0.01, T:0.42
Consensus pattern (9 bp):
ATTTTAAAA
Found at i:5296632 original size:26 final size:24
Alignment explanation
Indices: 5296556--5296641 Score: 84
Period size: 27 Copynumber: 3.3 Consensus size: 24
5296546 TATGTCACAT
*
5296556 TTTAAAACTTTTAAAAATTTAAAATA
1 TTTAAAAC-TTTAAAAATTTAGAA-A
5296582 TTTTAAAA-TTTAAAAAAATTTAGAAA
1 -TTTAAAACTTT--AAAAATTTAGAAA
5296608 TTTAAAACTTTAAAAATTTCCAGAAA
1 TTTAAAACTTTAAAAATTT--AGAAA
5296634 TTATAAAA
1 TT-TAAAA
5296642 AATACACTCT
Statistics
Matches: 52, Mismatches: 1, Indels: 12
0.80 0.02 0.18
Matches are distributed among these distances:
24 8 0.15
25 10 0.19
26 11 0.21
27 23 0.44
ACGTcount: A:0.55, C:0.05, G:0.02, T:0.38
Consensus pattern (24 bp):
TTTAAAACTTTAAAAATTTAGAAA
Found at i:5298365 original size:72 final size:72
Alignment explanation
Indices: 5298255--5298395 Score: 228
Period size: 72 Copynumber: 2.0 Consensus size: 72
5298245 TTTTGGTCCC
* * *
5298255 ATTCCAGTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTTCAGAAAATCAATTAAG
1 ATTCCAGTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAACTAAA
5298320 TGGTCAA
66 TGGTCAA
* * *
5298327 ATTCCATTGTCTATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGATAATCAACTAAA
1 ATTCCAGTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAACTAAA
5298392 TGGT
66 TGGT
5298396 ACTTTTCCTC
Statistics
Matches: 63, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
72 63 1.00
ACGTcount: A:0.29, C:0.13, G:0.21, T:0.38
Consensus pattern (72 bp):
ATTCCAGTGTCGATAGGGGAGTTATCATCTTTGAAGTTCTTTGATGTTACAGAAAATCAACTAAA
TGGTCAA
Found at i:5302064 original size:6 final size:6
Alignment explanation
Indices: 5302053--5302087 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
5302043 ATTATAATAA
* *
5302053 AATTTG AATTTG AATTTG AATTTA AATTTA AATTT
1 AATTTG AATTTG AATTTG AATTTG AATTTG AATTT
5302088 AAAATATAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (6 bp):
AATTTG
Found at i:5302068 original size:12 final size:12
Alignment explanation
Indices: 5302052--5302090 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
5302042 TATTATAATA
5302052 AAATTTGAATTT
1 AAATTTGAATTT
*
5302064 GAATTTGAATTT
1 AAATTTGAATTT
*
5302076 AAATTTAAATTT
1 AAATTTGAATTT
5302088 AAA
1 AAA
5302091 ATATAAATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (12 bp):
AAATTTGAATTT
Found at i:5302088 original size:6 final size:6
Alignment explanation
Indices: 5302052--5302090 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
5302042 TATTATAATA
* * *
5302052 AAATTT GAATTT GAATTT GAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAATTT AAATTT AAA
5302091 ATATAAATAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.46, C:0.00, G:0.08, T:0.46
Consensus pattern (6 bp):
AAATTT
Found at i:5303721 original size:19 final size:18
Alignment explanation
Indices: 5303679--5303721 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
5303669 AAAAAAAATT
*
5303679 AAAATATTAAATATTGAA
1 AAAAAATTAAATATTGAA
* *
5303697 ATAAAATTAATATATTTAA
1 AAAAAATTAA-ATATTGAA
5303716 AAAAAA
1 AAAAAA
5303722 GATATGGGTG
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 8 0.40
19 12 0.60
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (18 bp):
AAAAAATTAAATATTGAA
Found at i:5314033 original size:16 final size:16
Alignment explanation
Indices: 5314014--5314048 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
5314004 TAAAAATTGC
5314014 AAAAAAAAAAAAAAGA
1 AAAAAAAAAAAAAAGA
* *
5314030 AAAAGAAAAGAAAAGA
1 AAAAAAAAAAAAAAGA
5314046 AAA
1 AAA
5314049 GCATGTCAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (16 bp):
AAAAAAAAAAAAAAGA
Found at i:5314346 original size:118 final size:117
Alignment explanation
Indices: 5314118--5314552 Score: 402
Period size: 118 Copynumber: 3.5 Consensus size: 117
5314108 AGTATATGAA
* * *
5314118 TTAAATTTTAAATTTAAACATATTAAAAGTACC--AACTGAAATTTAGCCTTTTTCATGAAATGC
1 TTAAATTTTAAATTTAAACATATTAAAAGGACCAAAACTGAATTTTAACCTTTTTCATGAAA---
* *
5314181 TACAGAAAAAGATGAGAACATGTAAGTGTGTGGCACGTGTCAAAAGGAAGGTCCTTTGGAC
63 T---GAAAAA-A-GAGAACATGTAAGTGTGTGCCAC-TGTCAAAAGGAAGGTCCTTTAGAC
* *
5314242 CTAAATTTTAAATTTACACATATTAAAAGGACCAAAACTGAATTTTAACCTGTTTT-ATGAAATG
1 TTAAATTTTAAATTTAAACATATTAAAAGGACCAAAACTGAATTTTAACCT-TTTTCATGAAATG
*
5314306 AAAAAAGAGAACATGTAAGTGTGTGCCACATGTCACAAGGAAGGTCCTTTCCAGATC
65 AAAAAAGAGAACATGTAAGTGTGTGCCAC-TGTCAAAAGGAAGGTCCTTT--AGA-C
*
5314363 TTTTTACATATGTGTTATAAATTTAAACATATTAAAAGGACCAAAACTAAAATTTTAACCTTTTT
1 ---TTA-A-A--T-TT-TAAATTTAAACATATTAAAAGGACCAAAACT-GAATTTTAACCTTTTT
* ** *
5314428 CATGAAATGCAAAAAA-AG-ACATGTAAGTGTGTGCCAC-GTAGAAAACAAAGG-CTCTTTAAAC
56 CATGAAATG-AAAAAAGAGAACATGTAAGTGTGTGCCACTGT-CAAAAGGAAGGTC-CTTTAGAC
* * *
5314489 TTAAATTTCAAGTTTAAACATATTAAAAAGGACCAAAACTGAGA-TTTAACCTTTCT-ATGAAAT
1 TTAAATTTTAAATTTAAACATATT-AAAAGGACCAAAACTGA-ATTTTAACCTTTTTCATGAAAT
5314552 G
64 G
5314553 GAAAGAAAAG
Statistics
Matches: 268, Mismatches: 21, Indels: 52
0.79 0.06 0.15
Matches are distributed among these distances:
116 8 0.03
117 26 0.10
118 59 0.22
119 2 0.01
120 8 0.03
121 2 0.01
122 1 0.00
123 4 0.01
124 32 0.12
125 1 0.00
126 22 0.08
127 6 0.02
128 4 0.01
129 13 0.05
130 53 0.20
131 21 0.08
132 6 0.02
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (117 bp):
TTAAATTTTAAATTTAAACATATTAAAAGGACCAAAACTGAATTTTAACCTTTTTCATGAAATGA
AAAAAGAGAACATGTAAGTGTGTGCCACTGTCAAAAGGAAGGTCCTTTAGAC
Found at i:5314575 original size:254 final size:249
Alignment explanation
Indices: 5314126--5314584 Score: 558
Period size: 254 Copynumber: 1.8 Consensus size: 249
5314116 AATTAAATTT
* * *
5314126 TAAATTTAAACATATTAAAAGTACCAACTGAAATTTAGCCTTTTTCATGAAATGCTACAGAAAAA
1 TAAATTTAAACATATTAAAAGGACCAACTAAAATTTAACCTTTTTCATGAAATG--ACA-AAAAA
* ** ** *
5314191 GATGAGAACATGTAAGTGTGTGGCACGTGTCAAAAGGAAGGTCCTTTGGACCTAAATTTTAAATT
63 GA-GAGAACATGTAAGTGTGTGCCACGTG-CAAAACAAAGGTCCTTTAAACCTAAATTTCAAATT
* *
5314256 TACACATATTAAAAGGACCAAAACTGAATTTTAACCTGTTTTATGAAATGAAAAAAGAGAACATG
126 TAAACATATTAAAAGGACCAAAACTGAATTTTAACCTGTTCTATGAAATGAAAAAAGAGAACATG
*
5314321 TAAGTGTGTGCCACATGTCACAAGGAAGGTCCTTTCCAGATCTTTTTACATATGTGTTA
191 TAAGTATGTGCCACATGTCACAAGGAAGGTCCTTTCCAGATCTTTTTACATATGTGTTA
5314380 TAAATTTAAACATATTAAAAGGACCAAAACTAAAATTTTAACCTTTTTCATGAAATG-C-AAAAA
1 TAAATTTAAACATATTAAAAGGACC--AACTAAAA-TTTAACCTTTTTCATGAAATGACAAAAAA
* *
5314443 -A-AG-ACATGTAAGTGTGTGCCACGTAG-AAAACAAAGG-CTCTTTAAACTTAAATTTCAAGTT
63 GAGAGAACATGTAAGTGTGTGCCACGT-GCAAAACAAAGGTC-CTTTAAACCTAAATTTCAAATT
5314503 TAAACATATTAAAAAGGACCAAAACTGAGA-TTTAACCT-TTCTATGAAATGGAAAGAAAAGAAA
126 TAAACATATT-AAAAGGACCAAAACTGA-ATTTTAACCTGTTCTATGAAAT-----G-AAA-AAA
5314566 GAGAACATGTAAGTATGTG
182 GAGAACATGTAAGTATGTG
5314585 GCAGGTGTAA
Statistics
Matches: 177, Mismatches: 14, Indels: 28
0.81 0.06 0.13
Matches are distributed among these distances:
246 1 0.01
247 44 0.25
248 45 0.25
249 4 0.02
251 1 0.01
252 6 0.03
253 3 0.02
254 46 0.26
256 7 0.04
257 20 0.11
ACGTcount: A:0.42, C:0.13, G:0.16, T:0.29
Consensus pattern (249 bp):
TAAATTTAAACATATTAAAAGGACCAACTAAAATTTAACCTTTTTCATGAAATGACAAAAAAGAG
AGAACATGTAAGTGTGTGCCACGTGCAAAACAAAGGTCCTTTAAACCTAAATTTCAAATTTAAAC
ATATTAAAAGGACCAAAACTGAATTTTAACCTGTTCTATGAAATGAAAAAAGAGAACATGTAAGT
ATGTGCCACATGTCACAAGGAAGGTCCTTTCCAGATCTTTTTACATATGTGTTA
Found at i:5316920 original size:13 final size:13
Alignment explanation
Indices: 5316887--5316920 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
5316877 ATATTATACT
5316887 AATATAAAATATA
1 AATATAAAATATA
5316900 AAGT-TAAAATATA
1 AA-TATAAAATATA
5316913 AATATAAA
1 AATATAAA
5316921 TAAAAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 17 0.89
14 1 0.05
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AATATAAAATATA
Found at i:5319212 original size:29 final size:29
Alignment explanation
Indices: 5319162--5319218 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
5319152 AGCCCCGTGA
* *
5319162 CAAGTGGTATCCGAGCTGTTGGTTCGAAC
1 CAAGTGATATCCGAGCTATTGGTTCGAAC
* *
5319191 CAAGTGATATCTGAGTTATTGGTTCGAA
1 CAAGTGATATCCGAGCTATTGGTTCGAA
5319219 GGCACCGTTG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.32
Consensus pattern (29 bp):
CAAGTGATATCCGAGCTATTGGTTCGAAC
Found at i:5323005 original size:18 final size:19
Alignment explanation
Indices: 5322968--5323005 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
5322958 TGTTTTTATT
5322968 TAATTTCTTAATTATTTTA
1 TAATTTCTTAATTATTTTA
* *
5322987 TAATTT-TTATTTTTTTTA
1 TAATTTCTTAATTATTTTA
5323005 T
1 T
5323006 TAACACCATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.26, C:0.03, G:0.00, T:0.71
Consensus pattern (19 bp):
TAATTTCTTAATTATTTTA
Found at i:5326865 original size:167 final size:169
Alignment explanation
Indices: 5326578--5326913 Score: 658
Period size: 167 Copynumber: 2.0 Consensus size: 169
5326568 TATATATTTT
5326578 AAGGAAAATTATAATATTATTATATATAATCAATGCAAAATTTTTAAGGCACCTTATTAAATACG
1 AAGGAAAATTATAATATTATTATATATAATCAATGCAAAATTTTTAAGGCACCTTATTAAATACG
5326643 AAATTTATAGGCACGAAACTAAGAATGATTGAAGCTTCTGCAAACTTTTTTGTTAACATGGTGAC
66 AAATTTATAGGCACGAAACTAAGAATGATTGAAGCTTCTGCAAACTTTTTTGTTAACATGGTGAC
5326708 TTTAGCTTTCTCAGCATCTAGACTTACTGAACTGTTAAC
131 TTTAGCTTTCTCAGCATCTAGACTTACTGAACTGTTAAC
5326747 AAGGAAAA-T-TAATATTATTATATATAATCAATGCAAAATTTTTAAGGCACCTTATTAAATACG
1 AAGGAAAATTATAATATTATTATATATAATCAATGCAAAATTTTTAAGGCACCTTATTAAATACG
5326810 AAATTTATAGGCACGAAACTAAGAATGATTGAAGCTTCTGCAAACTTTTTTGTTAACATGGTGAC
66 AAATTTATAGGCACGAAACTAAGAATGATTGAAGCTTCTGCAAACTTTTTTGTTAACATGGTGAC
5326875 TTTAGCTTTCTCAGCATCTAGACTTACTGAACTGTTAAC
131 TTTAGCTTTCTCAGCATCTAGACTTACTGAACTGTTAAC
5326914 CTTAACCTCC
Statistics
Matches: 167, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
167 158 0.95
168 1 0.01
169 8 0.05
ACGTcount: A:0.37, C:0.14, G:0.14, T:0.35
Consensus pattern (169 bp):
AAGGAAAATTATAATATTATTATATATAATCAATGCAAAATTTTTAAGGCACCTTATTAAATACG
AAATTTATAGGCACGAAACTAAGAATGATTGAAGCTTCTGCAAACTTTTTTGTTAACATGGTGAC
TTTAGCTTTCTCAGCATCTAGACTTACTGAACTGTTAAC
Found at i:5330339 original size:14 final size:14
Alignment explanation
Indices: 5330320--5330348 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
5330310 AAAGAAGCAT
5330320 GGTTTTGGTTATAG
1 GGTTTTGGTTATAG
5330334 GGTTTTGGTTATAG
1 GGTTTTGGTTATAG
5330348 G
1 G
5330349 CAAATGATGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.00, G:0.38, T:0.48
Consensus pattern (14 bp):
GGTTTTGGTTATAG
Found at i:5334077 original size:8 final size:8
Alignment explanation
Indices: 5334001--5334078 Score: 66
Period size: 8 Copynumber: 9.1 Consensus size: 8
5333991 TATATGTCAC
*
5334001 ATTTTAAA
1 ATTTAAAA
*
5334009 ATTAAAAA
1 ATTTAAAA
*
5334017 ATCTAAAA
1 ATTTAAAA
5334025 TATTTAAAA
1 -ATTTAAAA
*
5334034 ATTCAAAAA
1 ATT-TAAAA
5334043 ATATATAAAA
1 AT-T-TAAAA
*
5334053 ATTTAGAA
1 ATTTAAAA
5334061 ATTTAAAAA
1 ATTT-AAAA
5334070 ATTTAAAA
1 ATTTAAAA
5334078 A
1 A
5334079 ATGTAAATTC
Statistics
Matches: 56, Mismatches: 10, Indels: 8
0.76 0.14 0.11
Matches are distributed among these distances:
8 28 0.50
9 21 0.38
10 7 0.12
ACGTcount: A:0.63, C:0.03, G:0.01, T:0.33
Consensus pattern (8 bp):
ATTTAAAA
Found at i:5334104 original size:9 final size:9
Alignment explanation
Indices: 5334006--5334085 Score: 76
Period size: 9 Copynumber: 9.1 Consensus size: 9
5333996 GTCACATTTT
5334006 AAAA-TTAA
1 AAAATTTAA
*
5334014 AAAATCTAA
1 AAAATTTAA
*
5334023 AATATTT-A
1 AAAATTTAA
*
5334031 AAAATTCAA
1 AAAATTTAA
*
5334040 AAAATATATA
1 AAAATTTA-A
5334050 AAAATTT-A
1 AAAATTTAA
*
5334058 GAAATTTAA
1 AAAATTTAA
5334067 AAAATTTAA
1 AAAATTTAA
*
5334076 AAAATGTAA
1 AAAATTTAA
5334085 A
1 A
5334086 TTCTTTAAAT
Statistics
Matches: 57, Mismatches: 11, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
8 17 0.30
9 33 0.58
10 7 0.12
ACGTcount: A:0.65, C:0.03, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAATTTAA
Found at i:5334202 original size:99 final size:99
Alignment explanation
Indices: 5334098--5334294 Score: 385
Period size: 99 Copynumber: 2.0 Consensus size: 99
5334088 CTTTAAATTT
5334098 AAAAAATAAAAATAGATAAAAAATTCTTATATGCGATATCTATTTGAGCGAACCCAATGACTAAT
1 AAAAAAT-AAAATAGATAAAAAATTCTTATATGCGATATCTATTTGAGCGAACCCAATGACTAAT
5334163 CCTCCTCGTTTTGTAGGTCCATTAAGAGATTAGTA
65 CCTCCTCGTTTTGTAGGTCCATTAAGAGATTAGTA
5334198 AAAAAATAAAATAGATAAAAAATTCTTATATGCGATATCTATTTGAGCGAACCCAATGACTAATC
1 AAAAAATAAAATAGATAAAAAATTCTTATATGCGATATCTATTTGAGCGAACCCAATGACTAATC
5334263 CTCCTCGTTTTGTAGGTCCATTAAGAGATTAG
66 CTCCTCGTTTTGTAGGTCCATTAAGAGATTAG
5334295 ATGTGATATA
Statistics
Matches: 97, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
99 90 0.93
100 7 0.07
ACGTcount: A:0.40, C:0.15, G:0.14, T:0.31
Consensus pattern (99 bp):
AAAAAATAAAATAGATAAAAAATTCTTATATGCGATATCTATTTGAGCGAACCCAATGACTAATC
CTCCTCGTTTTGTAGGTCCATTAAGAGATTAGTA
Found at i:5340251 original size:13 final size:13
Alignment explanation
Indices: 5340218--5340251 Score: 52
Period size: 13 Copynumber: 2.6 Consensus size: 13
5340208 ATATTATACT
5340218 AATATAAAATATA
1 AATATAAAATATA
5340231 AAGT-TAAAATATA
1 AA-TATAAAATATA
5340244 AATATAAA
1 AATATAAA
5340252 TAAAAGCATA
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
12 1 0.05
13 17 0.89
14 1 0.05
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.29
Consensus pattern (13 bp):
AATATAAAATATA
Found at i:5343317 original size:18 final size:18
Alignment explanation
Indices: 5343294--5343330 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
5343284 GTATTAAAAT
*
5343294 AAATAAATAATTTATTTA
1 AAATAAATAATATATTTA
*
5343312 AAATAAATTATATATTTA
1 AAATAAATAATATATTTA
5343330 A
1 A
5343331 CAAAAAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (18 bp):
AAATAAATAATATATTTA
Found at i:5348963 original size:14 final size:15
Alignment explanation
Indices: 5348935--5348963 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
5348925 AGCAAATAAT
5348935 GGAAGTAACAGTGAA
1 GGAAGTAACAGTGAA
5348950 GGAAGTAA-AGTGAA
1 GGAAGTAACAGTGAA
5348964 TTGGCTTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 6 0.43
15 8 0.57
ACGTcount: A:0.48, C:0.03, G:0.34, T:0.14
Consensus pattern (15 bp):
GGAAGTAACAGTGAA
Found at i:5352407 original size:4 final size:4
Alignment explanation
Indices: 5352398--5352422 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
5352388 TTAATATTAC
5352398 TTAT TTAT TTAT TTAT TTAT TTAT T
1 TTAT TTAT TTAT TTAT TTAT TTAT T
5352423 CTTTTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (4 bp):
TTAT
Found at i:5355912 original size:2 final size:2
Alignment explanation
Indices: 5355905--5355931 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
5355895 AAATATGCTA
5355905 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
5355932 AGTTTTATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:5356281 original size:8 final size:8
Alignment explanation
Indices: 5356268--5356348 Score: 54
Period size: 8 Copynumber: 9.4 Consensus size: 8
5356258 TATGCCACTT
5356268 TTTAAAAA
1 TTTAAAAA
5356276 TTTAAAAAA
1 TTT-AAAAA
*
5356285 TCTAAAATA
1 TTTAAAA-A
5356294 TTTTAAAAAA
1 -TTT-AAAAA
*
5356304 TTAAAAAAA
1 TT-TAAAAA
*
5356313 TATATAAAA
1 TTTA-AAAA
*
5356322 TTTAGAAA
1 TTTAAAAA
*
5356330 TTTAAAAT
1 TTTAAAAA
*
5356338 TTTAAAGA
1 TTTAAAAA
5356346 TTT
1 TTT
5356349 TCAAAAAAAT
Statistics
Matches: 56, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
8 26 0.46
9 23 0.41
10 3 0.05
11 4 0.07
ACGTcount: A:0.58, C:0.01, G:0.02, T:0.38
Consensus pattern (8 bp):
TTTAAAAA
Found at i:5356285 original size:9 final size:9
Alignment explanation
Indices: 5356271--5356336 Score: 62
Period size: 9 Copynumber: 7.3 Consensus size: 9
5356261 GCCACTTTTT
5356271 AAAAATTTA
1 AAAAATTTA
*
5356280 AAAAATCTA
1 AAAAATTTA
*
5356289 AAATATTTTA
1 AAA-AATTTA
*
5356299 AAAAATTAA
1 AAAAATTTA
*
5356308 AAAAATATA
1 AAAAATTTA
*
5356317 TAAAATTT-
1 AAAAATTTA
*
5356325 AGAAATTTA
1 AAAAATTTA
5356334 AAA
1 AAA
5356337 TTTTAAAGAT
Statistics
Matches: 43, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
8 6 0.14
9 30 0.70
10 7 0.16
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.32
Consensus pattern (9 bp):
AAAAATTTA
Found at i:5356297 original size:27 final size:27
Alignment explanation
Indices: 5356267--5356336 Score: 81
Period size: 28 Copynumber: 2.6 Consensus size: 27
5356257 ATATGCCACT
*
5356267 TTTTAAAAATTTAAAAAATCTA-AAATA
1 TTTTAAAAATTTAAAAAATATATAAA-A
*
5356294 TTTTAAAAAATTAAAAAAATATATAAAA
1 TTTT-AAAAATTTAAAAAATATATAAAA
*
5356322 -TTTAGAAATTTAAAA
1 TTTTAAAAATTTAAAA
5356337 TTTTAAAGAT
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 10 0.27
27 7 0.19
28 17 0.46
29 3 0.08
ACGTcount: A:0.61, C:0.01, G:0.01, T:0.36
Consensus pattern (27 bp):
TTTTAAAAATTTAAAAAATATATAAAA
Found at i:5356422 original size:11 final size:11
Alignment explanation
Indices: 5356406--5356469 Score: 60
Period size: 11 Copynumber: 5.5 Consensus size: 11
5356396 AAATAGATAA
5356406 AATTTTCTTAT
1 AATTTTCTTAT
5356417 AATTTTCTT-T
1 AATTTTCTTAT
*
5356427 AATTTTTTTTAGAT
1 AA-TTTTCTT--AT
5356441 AAAATTTTCTTAT
1 --AATTTTCTTAT
5356454 AATTTTCTT-T
1 AATTTTCTTAT
5356464 AATTTT
1 AATTTT
5356470 TTTTTAGTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 13
0.75 0.03 0.22
Matches are distributed among these distances:
10 10 0.22
11 24 0.53
13 2 0.04
14 1 0.02
15 6 0.13
16 2 0.04
ACGTcount: A:0.28, C:0.06, G:0.02, T:0.64
Consensus pattern (11 bp):
AATTTTCTTAT
Found at i:5356441 original size:37 final size:37
Alignment explanation
Indices: 5356399--5356473 Score: 150
Period size: 37 Copynumber: 2.0 Consensus size: 37
5356389 AAAATAAAAA
5356399 TAGATAAAATTTTCTTATAATTTTCTTTAATTTTTTT
1 TAGATAAAATTTTCTTATAATTTTCTTTAATTTTTTT
5356436 TAGATAAAATTTTCTTATAATTTTCTTTAATTTTTTT
1 TAGATAAAATTTTCTTATAATTTTCTTTAATTTTTTT
5356473 T
1 T
5356474 TAGTTTCTTA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.29, C:0.05, G:0.03, T:0.63
Consensus pattern (37 bp):
TAGATAAAATTTTCTTATAATTTTCTTTAATTTTTTT
Found at i:5360134 original size:20 final size:22
Alignment explanation
Indices: 5360090--5360136 Score: 62
Period size: 20 Copynumber: 2.2 Consensus size: 22
5360080 CATTTCAACA
*
5360090 AATTTTTTTATAATTTAATTAT
1 AATTTTCTTATAATTTAATTAT
*
5360112 AATTTTCTTA-AATTT-ATTTT
1 AATTTTCTTATAATTTAATTAT
5360132 AATTT
1 AATTT
5360137 CCCAAGGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 9 0.39
21 5 0.22
22 9 0.39
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (22 bp):
AATTTTCTTATAATTTAATTAT
Found at i:5365944 original size:12 final size:12
Alignment explanation
Indices: 5365895--5365944 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
5365885 AGTTCTTTTT
5365895 AAGTTTTTCATC
1 AAGTTTTTCATC
*
5365907 AAGTCTTTTCATA
1 AAGT-TTTTCATC
* *
5365920 AAATTTTCCATC
1 AAGTTTTTCATC
*
5365932 AAGTTTTTAATC
1 AAGTTTTTCATC
5365944 A
1 A
5365945 TTTCGTTTTT
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
12 20 0.67
13 10 0.33
ACGTcount: A:0.32, C:0.16, G:0.06, T:0.46
Consensus pattern (12 bp):
AAGTTTTTCATC
Found at i:5370342 original size:25 final size:22
Alignment explanation
Indices: 5370297--5370343 Score: 58
Period size: 25 Copynumber: 2.0 Consensus size: 22
5370287 GTAAATAAGA
*
5370297 AAAATATTTCTAGAAATTTTCT
1 AAAATATTTCTAGAAAATTTCT
5370319 AAAATAATTTCTTCAGAAAATTTCT
1 AAAAT-ATTTC-T-AGAAAATTTCT
5370344 CTCTACAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 5 0.24
24 1 0.05
25 10 0.48
ACGTcount: A:0.43, C:0.11, G:0.04, T:0.43
Consensus pattern (22 bp):
AAAATATTTCTAGAAAATTTCT
Found at i:5370429 original size:17 final size:17
Alignment explanation
Indices: 5370407--5370440 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
5370397 TCTTTATATA
5370407 GAAAAAGTTTAGAGAGT
1 GAAAAAGTTTAGAGAGT
5370424 GAAAAAGTTTAGAGAGT
1 GAAAAAGTTTAGAGAGT
5370441 TCAACTATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.47, C:0.00, G:0.29, T:0.24
Consensus pattern (17 bp):
GAAAAAGTTTAGAGAGT
Found at i:5372784 original size:28 final size:27
Alignment explanation
Indices: 5372726--5372780 Score: 76
Period size: 27 Copynumber: 2.0 Consensus size: 27
5372716 CTATTGCACC
* *
5372726 TAAATTTTAAAATTAAAATATATGGAA
1 TAAATTTTAAAATTAAAATATACGAAA
5372753 TAAATTCTTAAAATTAAAA-ATACGAAA
1 TAAATT-TTAAAATTAAAATATACGAAA
5372780 T
1 T
5372781 TAAAGTCTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 13 0.52
28 12 0.48
ACGTcount: A:0.56, C:0.04, G:0.05, T:0.35
Consensus pattern (27 bp):
TAAATTTTAAAATTAAAATATACGAAA
Found at i:5379241 original size:17 final size:17
Alignment explanation
Indices: 5379219--5379280 Score: 52
Period size: 17 Copynumber: 3.4 Consensus size: 17
5379209 ACACAATCTT
5379219 GGATTCGACCACCATTG
1 GGATTCGACCACCATTG
* *
5379236 GGATTCAATCACAACACATCTT
1 GGATTCGA-C-C-AC-CAT-TG
*
5379258 GGATTCGGCCACCATTG
1 GGATTCGACCACCATTG
5379275 GGATTC
1 GGATTC
5379281 AATCACAACA
Statistics
Matches: 35, Mismatches: 5, Indels: 10
0.70 0.10 0.20
Matches are distributed among these distances:
17 14 0.40
18 4 0.11
19 3 0.09
20 3 0.09
21 4 0.11
22 7 0.20
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (17 bp):
GGATTCGACCACCATTG
Found at i:5379258 original size:39 final size:39
Alignment explanation
Indices: 5379209--5379292 Score: 150
Period size: 39 Copynumber: 2.1 Consensus size: 39
5379199 AACACGGCAC
5379209 ACACAATCTTGGATTCGACCACCATTGGGATTCAATCACA
1 ACAC-ATCTTGGATTCGACCACCATTGGGATTCAATCACA
*
5379249 ACACATCTTGGATTCGGCCACCATTGGGATTCAATCACA
1 ACACATCTTGGATTCGACCACCATTGGGATTCAATCACA
5379288 ACACA
1 ACACA
5379293 CCCTTCCTTG
Statistics
Matches: 43, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
39 39 0.91
40 4 0.09
ACGTcount: A:0.32, C:0.29, G:0.15, T:0.24
Consensus pattern (39 bp):
ACACATCTTGGATTCGACCACCATTGGGATTCAATCACA
Found at i:5382600 original size:10 final size:10
Alignment explanation
Indices: 5382587--5382638 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
5382577 ACATATGACG
*
5382587 AAAAATGATA
1 AAAAATTATA
5382597 AAAAA--ATA
1 AAAAATTATA
*
5382605 AAAAATAATA
1 AAAAATTATA
*
5382615 AAAAGTTATA
1 AAAAATTATA
5382625 GAAAAATTATA
1 -AAAAATTATA
5382636 AAA
1 AAA
5382639 TGTTTCTTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
8 8 0.22
10 19 0.53
11 9 0.25
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (10 bp):
AAAAATTATA
Found at i:5382803 original size:19 final size:19
Alignment explanation
Indices: 5382791--5382841 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 19
5382781 TTTTACACTC
5382791 TTTTATATTTTTTTACGAT
1 TTTTATATTTTTTTACGAT
*
5382810 TTTTATATTTTTTT-CTAAT
1 TTTTATATTTTTTTAC-GAT
5382829 TTTTAATATTTTT
1 TTTT-ATATTTTT
5382842 ATTAAAATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
18 1 0.03
19 20 0.69
20 8 0.28
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (19 bp):
TTTTATATTTTTTTACGAT
Found at i:5388759 original size:17 final size:17
Alignment explanation
Indices: 5388739--5388773 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
5388729 TATTTTAAAA
5388739 TGTTGTCATTTTTATTT
1 TGTTGTCATTTTTATTT
* *
5388756 TGTTTTTATTTTTATTT
1 TGTTGTCATTTTTATTT
5388773 T
1 T
5388774 TTTGCCTAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.11, C:0.03, G:0.09, T:0.77
Consensus pattern (17 bp):
TGTTGTCATTTTTATTT
Found at i:5388905 original size:28 final size:27
Alignment explanation
Indices: 5388866--5388921 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 27
5388856 AATTCCTCAC
5388866 AAAATTTTCTAGAAACACATAAATTTA
1 AAAATTTTCTAGAAACACATAAATTTA
5388893 AAAATTTTTCTAGAAACACATAAATTTA
1 AAAA-TTTTCTAGAAACACATAAATTTA
5388921 A
1 A
5388922 CAATATATGT
Statistics
Matches: 28, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 4 0.14
28 24 0.86
ACGTcount: A:0.52, C:0.11, G:0.04, T:0.34
Consensus pattern (27 bp):
AAAATTTTCTAGAAACACATAAATTTA
Found at i:5395876 original size:44 final size:44
Alignment explanation
Indices: 5395821--5395998 Score: 356
Period size: 44 Copynumber: 4.0 Consensus size: 44
5395811 TTAATAATCC
5395821 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
1 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
5395865 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
1 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
5395909 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
1 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
5395953 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
1 AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
5395997 AA
1 AA
5395999 TTTTCCTTGA
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 134 1.00
ACGTcount: A:0.42, C:0.09, G:0.13, T:0.36
Consensus pattern (44 bp):
AAATTCATATTACATTTTGTGGAAAACTAAGTGCAATTAATTAG
Found at i:5401284 original size:12 final size:12
Alignment explanation
Indices: 5401268--5401309 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
5401258 AAATGTAATA
5401268 ATAAATTTAAAT
1 ATAAATTTAAAT
*
5401280 TTAAATTT-AAT
1 ATAAATTTAAAT
5401291 ATAAATATTAAAT
1 ATAAAT-TTAAAT
*
5401304 AAAAAT
1 ATAAAT
5401310 AATTATATTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
11 8 0.32
12 9 0.36
13 8 0.32
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
ATAAATTTAAAT
Found at i:5401285 original size:24 final size:24
Alignment explanation
Indices: 5401258--5401303 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
5401248 AATTTTCAAA
5401258 AAATGTAATAATAAAT-TTAAATTT
1 AAATGTAAT-ATAAATATTAAATTT
*
5401282 AAATTTAATATAAATATTAAAT
1 AAATGTAATATAAATATTAAAT
5401304 AAAAATAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 6 0.30
24 14 0.70
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (24 bp):
AAATGTAATATAAATATTAAATTT
Found at i:5402237 original size:16 final size:16
Alignment explanation
Indices: 5402207--5402237 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
5402197 AAGGCATGCA
*
5402207 CGTCTTTCTCAAAAAT
1 CGTCTTTCTAAAAAAT
5402223 CGTCTTTCTAAAAAA
1 CGTCTTTCTAAAAAA
5402238 AAGGAAGCCC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.06, T:0.35
Consensus pattern (16 bp):
CGTCTTTCTAAAAAAT
Found at i:5402734 original size:133 final size:134
Alignment explanation
Indices: 5402490--5402757 Score: 495
Period size: 133 Copynumber: 2.0 Consensus size: 134
5402480 GAAAGAAGAG
5402490 AGGCAAAGAGAAAAGAGACGATGGCAAAGGTGAGTAGGAGGGTGAAGATGAGGAAACGAAAGGGA
1 AGGCAAAGAG-AAAGAGACGATGGCAAAGGTGAGTAGGAGGGTGAAGATGAGGAAACGAAAGGGA
*
5402555 TAGTGGTGGAGGAGGGGGAGAAGGACAACCTGGCGGAGGTTTTTTTTTATTTTGTTTAATATTAA
65 TAGTGGTGGAGGAGGGGGAGAAGGACAAACTGGCGGAGGTTTTTTTTTATTTTGTTTAATATTAA
5402620 TATAA
130 TATAA
5402625 AGGCAAAGAG-AAGAGACGATGGCAAAGGTGAGTAGGAGGGTGAAGATGAGGAAACGAAAGGGAT
1 AGGCAAAGAGAAAGAGACGATGGCAAAGGTGAGTAGGAGGGTGAAGATGAGGAAACGAAAGGGAT
5402689 AGTGGTGGAGGAGGGGGAGAAGGACACAAC-GGCGGAGGTTTTTTTTTATTTTGTTTAATATTAA
66 AGTGGTGGAGGAGGGGGAGAAGGACA-AACTGGCGGAGGTTTTTTTTTATTTTGTTTAATATTAA
5402753 TATAA
130 TATAA
5402758 TTATTTTTAT
Statistics
Matches: 131, Mismatches: 1, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
133 119 0.91
134 2 0.02
135 10 0.08
ACGTcount: A:0.35, C:0.06, G:0.37, T:0.22
Consensus pattern (134 bp):
AGGCAAAGAGAAAGAGACGATGGCAAAGGTGAGTAGGAGGGTGAAGATGAGGAAACGAAAGGGAT
AGTGGTGGAGGAGGGGGAGAAGGACAAACTGGCGGAGGTTTTTTTTTATTTTGTTTAATATTAAT
ATAA
Found at i:5403564 original size:29 final size:29
Alignment explanation
Indices: 5403513--5403600 Score: 87
Period size: 29 Copynumber: 3.2 Consensus size: 29
5403503 CATTCCGAGG
* **
5403513 TTATAACCTTTTTAAAATGACACTTAATA
1 TTATGACCTTTTTAAAACAACACTTAATA
*
5403542 TTATGACCTTTTTGAAACAACAC----T-
1 TTATGACCTTTTTAAAACAACACTTAATA
* *
5403566 TTATGACCTTTCTAAAACATCACTTAATA
1 TTATGACCTTTTTAAAACAACACTTAATA
5403595 TTATGA
1 TTATGA
5403601 TATTTCTGAA
Statistics
Matches: 47, Mismatches: 7, Indels: 10
0.73 0.11 0.16
Matches are distributed among these distances:
24 20 0.43
25 1 0.02
28 1 0.02
29 25 0.53
ACGTcount: A:0.38, C:0.17, G:0.06, T:0.40
Consensus pattern (29 bp):
TTATGACCTTTTTAAAACAACACTTAATA
Found at i:5403574 original size:24 final size:24
Alignment explanation
Indices: 5403542--5403590 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
5403532 ACACTTAATA
* *
5403542 TTATGACCTTTTTGAAACAACACT
1 TTATGACCTTTCTAAAACAACACT
*
5403566 TTATGACCTTTCTAAAACATCACT
1 TTATGACCTTTCTAAAACAACACT
5403590 T
1 T
5403591 AATATTATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.33, C:0.22, G:0.06, T:0.39
Consensus pattern (24 bp):
TTATGACCTTTCTAAAACAACACT
Found at i:5405688 original size:10 final size:10
Alignment explanation
Indices: 5405665--5405719 Score: 56
Period size: 10 Copynumber: 5.5 Consensus size: 10
5405655 TACTATAGTT
**
5405665 TTTTTTTTGT
1 TTTTTTTTAA
5405675 TTTTTTTTAA
1 TTTTTTTTAA
*
5405685 TTTTTTTAAA
1 TTTTTTTTAA
* *
5405695 TTTCTTATAA
1 TTTTTTTTAA
*
5405705 TTTTTTTGAA
1 TTTTTTTTAA
5405715 TTTTT
1 TTTTT
5405720 AAATAATTCT
Statistics
Matches: 36, Mismatches: 9, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
10 36 1.00
ACGTcount: A:0.18, C:0.02, G:0.04, T:0.76
Consensus pattern (10 bp):
TTTTTTTTAA
Found at i:5405801 original size:8 final size:9
Alignment explanation
Indices: 5405778--5405818 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
5405768 ATTTGAGTCT
5405778 TTTAATTTA
1 TTTAATTTA
5405787 TTTAATTTA
1 TTTAATTTA
5405796 -TTAATTT-
1 TTTAATTTA
*
5405803 TTTACATTTT
1 TTTA-ATTTA
5405813 TTTAAT
1 TTTAAT
5405819 ATGAAAATTT
Statistics
Matches: 29, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
8 10 0.34
9 15 0.52
10 4 0.14
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTAATTTA
Found at i:5405801 original size:17 final size:17
Alignment explanation
Indices: 5405779--5405811 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
5405769 TTTGAGTCTT
5405779 TTAATTTATTTA-ATTTA
1 TTAATTT-TTTACATTTA
5405796 TTAATTTTTTACATTT
1 TTAATTTTTTACATTT
5405812 TTTTAATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (17 bp):
TTAATTTTTTACATTTA
Found at i:5406115 original size:18 final size:17
Alignment explanation
Indices: 5406092--5406128 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
5406082 AAAATAAAAG
5406092 AATTCAAAAATATATAAA
1 AATTCAAAAATAT-TAAA
*
5406110 AATTCATAAATATTAAA
1 AATTCAAAAATATTAAA
5406127 AA
1 AA
5406129 AAACATGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.65, C:0.05, G:0.00, T:0.30
Consensus pattern (17 bp):
AATTCAAAAATATTAAA
Found at i:5406129 original size:18 final size:17
Alignment explanation
Indices: 5406081--5406129 Score: 55
Period size: 18 Copynumber: 2.8 Consensus size: 17
5406071 TAAATTTTGT
*
5406081 AAAAATA-AAAGAATTC
1 AAAAATATAAAAAATTC
5406097 AAAAATATATAAAAATTC
1 AAAAATATA-AAAAATTC
*
5406115 ATAAATATTAAAAAA
1 AAAAATA-TAAAAAA
5406130 AACATGAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 7 0.25
17 1 0.04
18 18 0.64
19 2 0.07
ACGTcount: A:0.69, C:0.04, G:0.02, T:0.24
Consensus pattern (17 bp):
AAAAATATAAAAAATTC
Found at i:5406512 original size:25 final size:25
Alignment explanation
Indices: 5406465--5406512 Score: 60
Period size: 25 Copynumber: 1.9 Consensus size: 25
5406455 ATTTGTCTAT
* * *
5406465 ATTTAAAATTTTAATTAAGAAAAAA
1 ATTTAAAATATTAAATAACAAAAAA
*
5406490 ATTTAAAATATTAAATATCAAAA
1 ATTTAAAATATTAAATAACAAAA
5406513 TAAAAATAAT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 19 1.00
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.35
Consensus pattern (25 bp):
ATTTAAAATATTAAATAACAAAAAA
Found at i:5407780 original size:28 final size:28
Alignment explanation
Indices: 5407740--5408130 Score: 685
Period size: 28 Copynumber: 14.3 Consensus size: 28
5407730 TCACTTTTTT
*
5407740 ATTTAATAACTCTATTTTAATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407768 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
* *
5407796 ATTTAATAA-ACTA--TTC--TCA-T--
1 ATTTAATAACTCTATTTTCATTTATTAA
5407816 -TT-AATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407842 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407870 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407898 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407926 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407954 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5407982 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5408010 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5408038 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5408066 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5408094 ATTTAATAACTCTATTTTCATTTATTAA
1 ATTTAATAACTCTATTTTCATTTATTAA
5408122 ATTTAATAA
1 ATTTAATAA
5408131 ATGAAAATAG
Statistics
Matches: 348, Mismatches: 5, Indels: 20
0.93 0.01 0.05
Matches are distributed among these distances:
18 5 0.01
19 5 0.01
21 3 0.01
22 1 0.00
23 4 0.01
24 1 0.00
25 3 0.01
27 5 0.01
28 321 0.92
ACGTcount: A:0.37, C:0.10, G:0.00, T:0.53
Consensus pattern (28 bp):
ATTTAATAACTCTATTTTCATTTATTAA
Found at i:5407834 original size:19 final size:18
Alignment explanation
Indices: 5407796--5407842 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
5407786 CATTTATTAA
5407796 ATTTAATAAACTATTCTC
1 ATTTAATAAACTATTCTC
* *
5407814 ATTTAATAACTCTATTTTC
1 ATTTAATAA-ACTATTCTC
*
5407833 ATTTATTAAA
1 ATTTAATAAA
5407843 TTTAATAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 9 0.38
19 15 0.62
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (18 bp):
ATTTAATAAACTATTCTC
Found at i:5408435 original size:27 final size:28
Alignment explanation
Indices: 5408405--5408472 Score: 93
Period size: 28 Copynumber: 2.4 Consensus size: 28
5408395 GTTTTTTTGT
*
5408405 ATATTTTGTTAAAT-AAAAAAATTTATA
1 ATATTTTGTTAAATAAAAAAAAGTTATA
*
5408432 ATATTTTGGTAAATAAAAAAAAGTTATA
1 ATATTTTGTTAAATAAAAAAAAGTTATA
5408460 ATACTTTTAGTTA
1 ATA-TTTT-GTTA
5408473 TTTTTTATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 13 0.37
28 15 0.43
29 4 0.11
30 3 0.09
ACGTcount: A:0.49, C:0.01, G:0.07, T:0.43
Consensus pattern (28 bp):
ATATTTTGTTAAATAAAAAAAAGTTATA
Found at i:5424649 original size:10 final size:10
Alignment explanation
Indices: 5424600--5424647 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
5424590 TAAATTCCTA
5424600 AAAGATAAAT
1 AAAGATAAAT
* ** *
5424610 ACATTTAATT
1 AAAGATAAAT
5424620 AAAGATAAAT
1 AAAGATAAAT
5424630 AAAGATAAAT
1 AAAGATAAAT
5424640 AAA-ATAAA
1 AAAGATAAA
5424648 ATCCTAAAAT
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.67, C:0.02, G:0.06, T:0.25
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:5424692 original size:15 final size:14
Alignment explanation
Indices: 5424671--5424706 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
5424661 ATAATCCTTA
*
5424671 ATAATTATCTTAAT
1 ATAATTATCCTAAT
5424685 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
5424700 ATAATTA
1 ATAATTA
5424707 AAACAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:5425290 original size:3 final size:3
Alignment explanation
Indices: 5425282--5425329 Score: 53
Period size: 3 Copynumber: 16.3 Consensus size: 3
5425272 TATACATTTC
* * * *
5425282 ATT ATT ATT ATC ACT ATT ATT ATT ATT -TT ATT ATT ATC ATT TTT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
5425329 A
1 A
5425330 GTGTTTAATT
Statistics
Matches: 36, Mismatches: 8, Indels: 2
0.78 0.17 0.04
Matches are distributed among these distances:
2 2 0.06
3 34 0.94
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:5425327 original size:23 final size:23
Alignment explanation
Indices: 5425283--5425353 Score: 67
Period size: 26 Copynumber: 3.1 Consensus size: 23
5425273 ATACATTTCA
5425283 TTATTATTATCACTATTATTATTATT
1 TTATTATTATCA-T-TT-TTATTATT
*
5425309 TTATTATTATCATTTTTATTAGT
1 TTATTATTATCATTTTTATTATT
* *
5425332 GT-TTAAT-TCATTTTTA-TATT
1 TTATTATTATCATTTTTATTATT
5425352 TT
1 TT
5425354 TAGTATTAGA
Statistics
Matches: 40, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
20 4 0.10
21 9 0.22
22 4 0.10
23 8 0.20
24 2 0.05
25 1 0.03
26 12 0.30
ACGTcount: A:0.27, C:0.06, G:0.03, T:0.65
Consensus pattern (23 bp):
TTATTATTATCATTTTTATTATT
Found at i:5425425 original size:20 final size:20
Alignment explanation
Indices: 5425379--5425430 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
5425369 AATTAATATG
* * **
5425379 GTCATTGTTATTATTATTTG
1 GTCATTATTATTATAATTAC
*
5425399 GTGATTATTATTATAATTAC
1 GTCATTATTATTATAATTAC
5425419 GTCATTATTATT
1 GTCATTATTATT
5425431 GTGTTCTATG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.27, C:0.06, G:0.12, T:0.56
Consensus pattern (20 bp):
GTCATTATTATTATAATTAC
Found at i:5437284 original size:72 final size:72
Alignment explanation
Indices: 5437167--5437788 Score: 849
Period size: 72 Copynumber: 8.6 Consensus size: 72
5437157 TCTTTGGAGG
* *
5437167 AGTTGTCATCTTTGGAGGAGTTTGTTGCTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
5437232 ATAGGGC
66 ATAGGGC
* * *
5437239 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAGTTAAATGGTCAAA-TCCCATTGTC
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCC-TTGTC
*
5437303 TATAGGGG
65 TATAGGGC
* * * ** *
5437311 AGTTATCGTCTTTGAAGTTGTTTGTTGTTTCA-AACAATCAATTAAACGGCCAAATTCCCTTGTC
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAA-AATCAATTAAACGGCCAAATTCCCTTGTC
5437375 TATAGGGC
65 TATAGGGC
* * *
5437383 AGTTGTCATCTTTGGAGAAGTTTGTTGCTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
5437448 ATAGGGC
66 ATAGGGC
* *
5437455 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAATGGTCAAA-TCCCATTGTC
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCC-TTGTC
*
5437519 TATAGGGG
65 TATAGGGC
* * ** * *
5437527 AGTTATCATCTTTGAAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCT
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
5437592 ATAGGGC
66 ATAGGGC
* * *
5437599 AGTTGTCATCTTTGGAGGAGTTTAATGTTTCAGAAAATCAATTAAATGGTCAAA-TCCCATTGTC
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCC-TTGTC
*
5437663 TATAGGGG
65 TATAGGGC
* * ** * *
5437671 AGTTATCATCTTTGAAGTTGTTTGATGTTTCAAAAAATCAGTTAAACGGCCAAATTCCCTTGTCT
1 AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
5437736 ATAGGGC
66 ATAGGGC
*
5437743 AGTTATCATCTTTGGAGGTA-TTTGATGTTTCAGAAAATCAATTAAA
1 AGTTGTCATCTTTGGAGG-AGTTTGATGTTTCAGAAAATCAATTAAA
5437789 TGGTACTTTT
Statistics
Matches: 479, Mismatches: 62, Indels: 18
0.86 0.11 0.03
Matches are distributed among these distances:
71 14 0.03
72 451 0.94
73 14 0.03
ACGTcount: A:0.29, C:0.15, G:0.21, T:0.35
Consensus pattern (72 bp):
AGTTGTCATCTTTGGAGGAGTTTGATGTTTCAGAAAATCAATTAAACGGCCAAATTCCCTTGTCT
ATAGGGC
Done.