Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 20 of 163
Found at i:6733729 original size:16 final size:16
Alignment explanation
Indices: 6733682--6733737 Score: 53
Period size: 16 Copynumber: 3.6 Consensus size: 16
6733672 AGGTTTAGGG
*
6733682 TTAATGGTTTTTAA-TT
1 TTAA-GGTTTTAAAGTT
* *
6733698 TTAAAG-TTTAAGGTT
1 TTAAGGTTTTAAAGTT
6733713 TTAAGGTTTTAAAGTT
1 TTAAGGTTTTAAAGTT
*
6733729 TTTAGGTTT
1 TTAAGGTTT
6733738 AGAGTTTAGT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
14 4 0.12
15 8 0.25
16 20 0.62
ACGTcount: A:0.27, C:0.00, G:0.18, T:0.55
Consensus pattern (16 bp):
TTAAGGTTTTAAAGTT
Found at i:6733925 original size:21 final size:21
Alignment explanation
Indices: 6733797--6733914 Score: 109
Period size: 21 Copynumber: 5.5 Consensus size: 21
6733787 ATGGTTTAGA
6733797 GTTTAGAGGTTTTA-AG-TTAAG
1 GTTTA-AGG-TTTAGAGTTTAAG
* *
6733818 GTTTAGGGTTTAGTGTTTAAG
1 GTTTAAGGTTTAGAGTTTAAG
*
6733839 GTTTAGGGTTTA-AGGTTTTTAA-
1 GTTTAAGGTTTAGA-G--TTTAAG
* *
6733861 GTTTAAAGGTTTAGAATTTAGG
1 GTTT-AAGGTTTAGAGTTTAAG
6733883 GTTTAAGGTTTAGAGTTTAAG
1 GTTTAAGGTTTAGAGTTTAAG
6733904 GTTTAAGGTTT
1 GTTTAAGGTTT
6733915 TTAAGTTAAG
Statistics
Matches: 81, Mismatches: 8, Indels: 16
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.05
20 3 0.04
21 53 0.65
22 8 0.10
23 12 0.15
24 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.46
Consensus pattern (21 bp):
GTTTAAGGTTTAGAGTTTAAG
Found at i:6733950 original size:33 final size:34
Alignment explanation
Indices: 6733885--6733995 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 34
6733875 AATTTAGGGT
* * * *
6733885 TTAAGGTTTAGAGTTTAAGGTTTAAGGTTTTTAAG
1 TTAAGGGTTAG-GATTAAGGATTAGGGTTTTTAAG
6733920 TTAAGGGTTAGGATTAAGG-TTAGGGTTTTTAAG
1 TTAAGGGTTAGGATTAAGGATTAGGGTTTTTAAG
* * **
6733953 TTAATGGTTAAGATT-AGGATTAGATTTTTTAAG
1 TTAAGGGTTAGGATTAAGGATTAGGGTTTTTAAG
6733986 TTAAGGGTTA
1 TTAAGGGTTA
6733996 TGGTTTTTTG
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
32 3 0.04
33 47 0.70
34 7 0.10
35 10 0.15
ACGTcount: A:0.30, C:0.00, G:0.27, T:0.43
Consensus pattern (34 bp):
TTAAGGGTTAGGATTAAGGATTAGGGTTTTTAAG
Found at i:6734039 original size:23 final size:23
Alignment explanation
Indices: 6733977--6734040 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 23
6733967 TAGGATTAGA
*
6733977 TTTTTTAAGTTAAGGG-TTATGG
1 TTTTTTAAGTTTAGGGTTTATGG
* *
6733999 TTTTTT-GGTTTAGAGTTTATGG
1 TTTTTTAAGTTTAGGGTTTATGG
*
6734021 TTTTTTAATTTTAGGGTTTA
1 TTTTTTAAGTTTAGGGTTTA
6734041 GTGTTTAGTG
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.18
22 18 0.53
23 10 0.29
ACGTcount: A:0.19, C:0.00, G:0.23, T:0.58
Consensus pattern (23 bp):
TTTTTTAAGTTTAGGGTTTATGG
Found at i:6734069 original size:22 final size:24
Alignment explanation
Indices: 6734037--6734083 Score: 71
Period size: 22 Copynumber: 2.0 Consensus size: 24
6734027 AATTTTAGGG
*
6734037 TTTAGTGTTTAGTGTTTA-GATTT
1 TTTAGTGTTTAGGGTTTATGATTT
6734060 TTTAG-GTTTAGGGTTTATGATTT
1 TTTAGTGTTTAGGGTTTATGATTT
6734083 T
1 T
6734084 AAAATTTAAG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 11 0.50
23 11 0.50
ACGTcount: A:0.17, C:0.00, G:0.23, T:0.60
Consensus pattern (24 bp):
TTTAGTGTTTAGGGTTTATGATTT
Found at i:6734070 original size:36 final size:37
Alignment explanation
Indices: 6734006--6734076 Score: 99
Period size: 36 Copynumber: 1.9 Consensus size: 37
6733996 TGGTTTTTTG
* *
6734006 GTTTAGAGTTTATGGTTTTTTAATTTTAGGGTTTAGT
1 GTTTAGAGTTTATGATTTTTTAAGTTTAGGGTTTAGT
* *
6734043 GTTTAGTGTTTA-GATTTTTTAGGTTTAGGGTTTA
1 GTTTAGAGTTTATGATTTTTTAAGTTTAGGGTTTA
6734077 TGATTTTAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
36 19 0.63
37 11 0.37
ACGTcount: A:0.18, C:0.00, G:0.25, T:0.56
Consensus pattern (37 bp):
GTTTAGAGTTTATGATTTTTTAAGTTTAGGGTTTAGT
Found at i:6734113 original size:14 final size:15
Alignment explanation
Indices: 6734081--6734114 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
6734071 GGTTTATGAT
6734081 TTTAAAATTTAAGGG
1 TTTAAAATTTAAGGG
6734096 TTTAAAATTTAA-GG
1 TTTAAAATTTAAGGG
6734110 TTTAA
1 TTTAA
6734115 GGTTAGGGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 7 0.37
15 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (15 bp):
TTTAAAATTTAAGGG
Found at i:6734213 original size:22 final size:21
Alignment explanation
Indices: 6734183--6734266 Score: 91
Period size: 22 Copynumber: 3.8 Consensus size: 21
6734173 GGGTTATGGT
6734183 TTTTAGGTTTAGGGTTTTTAA
1 TTTTAGGTTTAGGGTTTTTAA
6734204 TTTTATGGTTTAGGGTTTTTAA
1 TTTTA-GGTTTAGGGTTTTTAA
*
6734226 TGTTTAGTGTTTAAGG--TTTAA
1 T-TTTAG-GTTTAGGGTTTTTAA
6734247 GGTTTTTAGGTTTAGGGTTT
1 ---TTTTAGGTTTAGGGTTT
6734267 AGTGTTTAGG
Statistics
Matches: 53, Mismatches: 2, Indels: 13
0.78 0.03 0.19
Matches are distributed among these distances:
21 10 0.19
22 25 0.47
23 16 0.30
24 2 0.04
ACGTcount: A:0.18, C:0.00, G:0.26, T:0.56
Consensus pattern (21 bp):
TTTTAGGTTTAGGGTTTTTAA
Found at i:6734222 original size:15 final size:15
Alignment explanation
Indices: 6734204--6734266 Score: 51
Period size: 15 Copynumber: 4.2 Consensus size: 15
6734194 GGGTTTTTAA
6734204 TTTTATGGTTTAGGG
1 TTTTATGGTTTAGGG
*
6734219 TTTTTAAT-GTTTAGTG
1 -TTTT-ATGGTTTAGGG
* *
6734235 -TTTAAGGTTTAAGG
1 TTTTATGGTTTAGGG
6734249 TTTT-TAGGTTTAGGG
1 TTTTAT-GGTTTAGGG
6734264 TTT
1 TTT
6734267 AGTGTTTAGG
Statistics
Matches: 37, Mismatches: 6, Indels: 9
0.71 0.12 0.17
Matches are distributed among these distances:
13 1 0.03
14 9 0.24
15 14 0.38
16 11 0.30
17 2 0.05
ACGTcount: A:0.17, C:0.00, G:0.27, T:0.56
Consensus pattern (15 bp):
TTTTATGGTTTAGGG
Found at i:6734244 original size:14 final size:14
Alignment explanation
Indices: 6734205--6734350 Score: 82
Period size: 14 Copynumber: 10.3 Consensus size: 14
6734195 GGTTTTTAAT
*
6734205 TTTATGGTTTAGGG
1 TTTAAGGTTTAGGG
* *
6734219 TTTTTAATGTTTAGTG
1 --TTTAAGGTTTAGGG
*
6734235 TTTAAGGTTTAAGGT
1 TTTAAGGTTT-AGGG
*
6734250 TTTTAGGTTTAGGG
1 TTTAAGGTTTAGGG
6734264 TTT-AGTGTTTAGGG
1 TTTAAG-GTTTAGGG
* * *
6734278 CTTAAAGTTTAGTGT
1 TTTAAGGTTTAG-GG
*
6734293 TTTAA-GTTAAGGG
1 TTTAAGGTTTAGGG
**
6734306 -TTATTGTTTAGGG
1 TTTAAGGTTTAGGG
* **
6734319 TTTAGGGTTTAGTA
1 TTTAAGGTTTAGGG
* *
6734333 TTTAGGGTTTAGAG
1 TTTAAGGTTTAGGG
6734347 TTTA
1 TTTA
6734351 TGTATTTTAA
Statistics
Matches: 102, Mismatches: 22, Indels: 14
0.74 0.16 0.10
Matches are distributed among these distances:
12 3 0.03
13 10 0.10
14 61 0.60
15 17 0.17
16 11 0.11
ACGTcount: A:0.21, C:0.01, G:0.29, T:0.50
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:6734268 original size:7 final size:7
Alignment explanation
Indices: 6734227--6734350 Score: 65
Period size: 7 Copynumber: 17.7 Consensus size: 7
6734217 GGTTTTTAAT
*
6734227 GTTTAGT
1 GTTTAGG
*
6734234 GTTTAAG
1 GTTTAGG
6734241 GTTTAAGG
1 GTTT-AGG
*
6734249 TTTTTA-G
1 -GTTTAGG
6734256 GTTTAGG
1 GTTTAGG
*
6734263 GTTTAGT
1 GTTTAGG
6734270 GTTTAGG
1 GTTTAGG
* **
6734277 GCTTAAA
1 GTTTAGG
6734284 GTTTAGTG
1 GTTTAG-G
* *
6734292 TTTTA-A
1 GTTTAGG
*
6734298 GTTAAGG
1 GTTTAGG
**
6734305 G-TTATT
1 GTTTAGG
6734311 GTTTAGG
1 GTTTAGG
6734318 GTTTAGG
1 GTTTAGG
*
6734325 GTTTAGT
1 GTTTAGG
*
6734332 ATTTAGG
1 GTTTAGG
*
6734339 GTTTAGA
1 GTTTAGG
6734346 GTTTA
1 GTTTA
6734351 TGTATTTTAA
Statistics
Matches: 83, Mismatches: 28, Indels: 12
0.67 0.23 0.10
Matches are distributed among these distances:
6 10 0.12
7 63 0.76
8 7 0.08
9 3 0.04
ACGTcount: A:0.21, C:0.01, G:0.30, T:0.48
Consensus pattern (7 bp):
GTTTAGG
Found at i:6734274 original size:29 final size:30
Alignment explanation
Indices: 6734205--6734267 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
6734195 GGTTTTTAAT
* * * *
6734205 TTTATGGTTTAGGGTTTTTAATGTTTAGTG
1 TTTAAGGTTTAAGGTTTTTAAGGTTTAGGG
6734235 TTTAAGGTTTAAGGTTTTT-AGGTTTAGGG
1 TTTAAGGTTTAAGGTTTTTAAGGTTTAGGG
6734264 TTTA
1 TTTA
6734268 GTGTTTAGGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
29 12 0.41
30 17 0.59
ACGTcount: A:0.19, C:0.00, G:0.27, T:0.54
Consensus pattern (30 bp):
TTTAAGGTTTAAGGTTTTTAAGGTTTAGGG
Found at i:6734338 original size:21 final size:21
Alignment explanation
Indices: 6734184--6734357 Score: 88
Period size: 21 Copynumber: 8.1 Consensus size: 21
6734174 GGTTATGGTT
*
6734184 TTTA-GGTTTAGGGTTT-TTAA
1 TTTAGGGTTTAGGGTTTAGT-A
* * *
6734204 TTTTATGGTTTAGGGTTTTTAATG
1 -TTTAGGGTTTAGGG--TTTAGTA
* * *
6734228 TTTAGTGTTTAAGGTTTAAGGTT
1 TTTAGGGTTTAGGGTTT-A-GTA
*
6734251 TTTA-GGTTTAGGGTTTAGTG
1 TTTAGGGTTTAGGGTTTAGTA
* ** *
6734271 TTTAGGGCTTAAAGTTTAGTGT
1 TTTAGGGTTTAGGGTTTAGT-A
* * * *
6734293 TTTA-AGTTAAGGG-TTATTG
1 TTTAGGGTTTAGGGTTTAGTA
6734312 TTTAGGGTTTAGGGTTTAGTA
1 TTTAGGGTTTAGGGTTTAGTA
*
6734333 TTTAGGGTTTAGAGTTTATGTA
1 TTTAGGGTTTAGGGTTTA-GTA
6734355 TTT
1 TTT
6734358 TAAGTTAGGG
Statistics
Matches: 116, Mismatches: 26, Indels: 21
0.71 0.16 0.13
Matches are distributed among these distances:
19 4 0.03
20 17 0.15
21 45 0.39
22 30 0.26
23 16 0.14
24 3 0.03
25 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.28, T:0.52
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAGTA
Found at i:6734460 original size:15 final size:14
Alignment explanation
Indices: 6734424--6734472 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
6734414 AAAGTTTAAA
*
6734424 GGTTTATGATTTAG
1 GGTTTAAGATTTAG
6734438 GGTTTAAGATTTATG
1 GGTTTAAGATTTA-G
* *
6734453 GTTTTAAGGTTTAG
1 GGTTTAAGATTTAG
*
6734467 AGTTTA
1 GGTTTA
6734473 GAGGTTAAAG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
14 17 0.59
15 12 0.41
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
GGTTTAAGATTTAG
Found at i:6734472 original size:22 final size:21
Alignment explanation
Indices: 6734368--6734472 Score: 72
Period size: 22 Copynumber: 4.9 Consensus size: 21
6734358 TAAGTTAGGG
6734368 TTTAAGGTTTAAAAGTTATAT-T
1 TTTAAGGTTT-AAAGTT-TATGT
* * *
6734390 TTT-AGGTTTAGAGTTCAGGGT
1 TTTAAGGTTTAAAGTTTA-TGT
* *
6734411 TTTAAAGTTTAAAGGTTTATGA
1 TTTAAGGTTTAAA-GTTTATGT
*
6734433 TTTAGGGTTT-AAGATTTATGGT
1 TTTAAGGTTTAAAG-TTTAT-GT
*
6734455 TTTAAGGTTTAGAGTTTA
1 TTTAAGGTTTAAAGTTTA
6734473 GAGGTTAAAG
Statistics
Matches: 63, Mismatches: 13, Indels: 14
0.70 0.14 0.16
Matches are distributed among these distances:
19 1 0.02
20 6 0.10
21 17 0.27
22 33 0.52
23 6 0.10
ACGTcount: A:0.29, C:0.01, G:0.23, T:0.48
Consensus pattern (21 bp):
TTTAAGGTTTAAAGTTTATGT
Found at i:6734473 original size:36 final size:37
Alignment explanation
Indices: 6734417--6734497 Score: 96
Period size: 36 Copynumber: 2.2 Consensus size: 37
6734407 GGGTTTTAAA
* *
6734417 GTTTAAAGGTTTATGATTTAG-GGTTTAAGATTTA-TG
1 GTTTTAAGGTTTATGATTTAGAGGTTAAAG-TTTAGTG
6734453 GTTTTAAGGTTTA-GAGTTTAGAGGTTAAAGTTTAGTG
1 GTTTTAAGGTTTATGA-TTTAGAGGTTAAAGTTTAGTG
*
6734490 TTTTTAAG
1 GTTTTAAG
6734498 TTAAAGGTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
35 2 0.05
36 21 0.54
37 16 0.41
ACGTcount: A:0.27, C:0.00, G:0.26, T:0.47
Consensus pattern (37 bp):
GTTTTAAGGTTTATGATTTAGAGGTTAAAGTTTAGTG
Found at i:6734633 original size:22 final size:22
Alignment explanation
Indices: 6734614--6734697 Score: 98
Period size: 22 Copynumber: 3.8 Consensus size: 22
6734604 ATAGTTTAGG
* *
6734614 GTTTATGTTTTTTAGGTTTAAA
1 GTTTATGGTTTTTAAGTTTAAA
6734636 GTTTATGGTTTTTAAGTTTAAA
1 GTTTATGGTTTTTAAGTTTAAA
* * *
6734658 GTTTA-GGGTTTTATGGTTTATA
1 GTTTATGGTTTTTA-AGTTTAAA
*
6734680 GTTTAAGGTTTTTAAGTT
1 GTTTATGGTTTTTAAGTT
6734698 AAGGGTTAGG
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
21 7 0.13
22 39 0.74
23 7 0.13
ACGTcount: A:0.23, C:0.00, G:0.21, T:0.56
Consensus pattern (22 bp):
GTTTATGGTTTTTAAGTTTAAA
Found at i:6734683 original size:15 final size:14
Alignment explanation
Indices: 6734595--6734690 Score: 59
Period size: 15 Copynumber: 6.6 Consensus size: 14
6734585 AAGTTATGAG
*
6734595 TTATGATTTATAGT
1 TTATGGTTTATAGT
*
6734609 TTAGGGTTTAT-GTT
1 TTATGGTTTATAG-T
* *
6734623 TTTTAGGTTTAAAGT
1 TTAT-GGTTTATAGT
*
6734638 TTATGGTTTTTAAGT
1 TTATGGTTTAT-AGT
** **
6734653 TTAAAGTTTAGGGTT
1 TTATGGTTTATAG-T
6734668 TTATGGTTTATAGT
1 TTATGGTTTATAGT
*
6734682 TTAAGGTTT
1 TTATGGTTT
6734691 TTAAGTTAAG
Statistics
Matches: 59, Mismatches: 18, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
13 1 0.02
14 27 0.46
15 30 0.51
16 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.22, T:0.55
Consensus pattern (14 bp):
TTATGGTTTATAGT
Found at i:6734730 original size:33 final size:33
Alignment explanation
Indices: 6734688--6734750 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
6734678 TAGTTTAAGG
*
6734688 TTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGA
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
6734721 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
6734751 AGTGTTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (33 bp):
TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
Found at i:6734752 original size:7 final size:7
Alignment explanation
Indices: 6734742--6734792 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
6734732 AGGGTTAGAA
6734742 TTAGGGT
1 TTAGGGT
*
6734749 TTAGTGT
1 TTAGGGT
6734756 TTAGGGT
1 TTAGGGT
6734763 TTAGGGTT
1 TTAGGG-T
6734771 TTA-GGT
1 TTAGGGT
*
6734777 TTAGTGT
1 TTAGGGT
*
6734784 TTAAGGT
1 TTAGGGT
6734791 TT
1 TT
6734793 TAAAGTTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 4 0.11
7 29 0.78
8 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (7 bp):
TTAGGGT
Found at i:6734761 original size:14 final size:14
Alignment explanation
Indices: 6734742--6734792 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
6734732 AGGGTTAGAA
6734742 TTAGGGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6734756 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGTG-T
6734771 TTA-GGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6734784 TTAAGGTTT
1 TTAGGGTTT
6734793 TAAAGTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 4 0.12
14 25 0.76
15 4 0.12
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (14 bp):
TTAGGGTTTAGTGT
Found at i:6734766 original size:21 final size:20
Alignment explanation
Indices: 6734742--6734792 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
6734732 AGGGTTAGAA
6734742 TTAGGGTTTAGTGTTTAGGGT
1 TTAGGGTTTAG-GTTTAGGGT
*
6734763 TTAGGGTTTTAGGTTTAGTGT
1 TTAGGG-TTTAGGTTTAGGGT
*
6734784 TTAAGGTTT
1 TTAGGGTTT
6734793 TAAAGTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 3 0.11
21 19 0.70
22 5 0.19
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (20 bp):
TTAGGGTTTAGGTTTAGGGT
Found at i:6734793 original size:21 final size:22
Alignment explanation
Indices: 6734748--6734794 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
6734738 AGAATTAGGG
*
6734748 TTTAGTGTTTAGGGTTTAGGGT
1 TTTAGTGTTTAGGGTTTAAGGT
*
6734770 TTTAG-GTTTAGTGTTTAAGGT
1 TTTAGTGTTTAGGGTTTAAGGT
6734791 TTTA
1 TTTA
6734795 AAGTTCAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (22 bp):
TTTAGTGTTTAGGGTTTAAGGT
Found at i:6734814 original size:23 final size:22
Alignment explanation
Indices: 6734760--6734854 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 22
6734750 TAGTGTTTAG
* *
6734760 GGTTTAGGGTTTT-AGGTT-TA
1 GGTTTAGGGTTTTAAAGTTCAA
*
6734780 GTGTTTAAGGTTTTAAAGTTCAA
1 G-GTTTAGGGTTTTAAAGTTCAA
*
6734803 GGATTTAGGGTTTTAAAGTTTAA
1 GG-TTTAGGGTTTTAAAGTTCAA
*
6734826 GGTTTAGGATTTGT-AAGTT-AA
1 GGTTTAGGGTTT-TAAAGTTCAA
*
6734847 GGGTTAGG
1 GGTTTAGG
6734855 ATTAAGGTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.02
21 20 0.32
22 19 0.30
23 23 0.37
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.43
Consensus pattern (22 bp):
GGTTTAGGGTTTTAAAGTTCAA
Found at i:6734830 original size:7 final size:7
Alignment explanation
Indices: 6734754--6734831 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
6734744 AGGGTTTAGT
*
6734754 GTTTAGG
1 GTTTAAG
*
6734761 GTTTAGG
1 GTTTAAG
*
6734768 GTTTTAG
1 GTTTAAG
6734775 GTTT-AG
1 GTTTAAG
6734781 TGTTTAAG
1 -GTTTAAG
*
6734789 GTTTTAAA
1 G-TTTAAG
*
6734797 GTTCAAG
1 GTTTAAG
*
6734804 GATTTAGG
1 G-TTTAAG
*
6734812 GTTTTAAA
1 G-TTTAAG
6734820 GTTTAAG
1 GTTTAAG
6734827 GTTTA
1 GTTTA
6734832 GGATTTGTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
6 2 0.04
7 36 0.64
8 18 0.32
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:6734843 original size:22 final size:22
Alignment explanation
Indices: 6734754--6734857 Score: 83
Period size: 21 Copynumber: 4.8 Consensus size: 22
6734744 AGGGTTTAGT
* * *
6734754 GTTTAGGGTTTAGGGTTTT-AG
1 GTTTAAGGTTTAGGATTTTAAA
6734775 GTTT-AGTGTTTAAGG-TTTTAAA
1 GTTTAAG-GTTT-AGGATTTTAAA
* *
6734797 GTTCAAGGATTTAGGGTTTTAAA
1 GTTTAAGG-TTTAGGATTTTAAA
6734820 GTTTAAGGTTTAGGATTTGT-AA
1 GTTTAAGGTTTAGGATTT-TAAA
*
6734842 G-TTAAGGGTTAGGATT
1 GTTTAAGGTTTAGGATT
6734858 AAGGTTAGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
20 1 0.01
21 26 0.37
22 23 0.33
23 20 0.29
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
GTTTAAGGTTTAGGATTTTAAA
Found at i:6734848 original size:21 final size:22
Alignment explanation
Indices: 6734782--6734857 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
6734772 TAGGTTTAGT
6734782 GTTTAAGG-TTTTAAAGTTCAAG
1 GTTT-AGGATTTTAAAGTTCAAG
* *
6734804 GATTTAGGGTTTTAAAGTTTAAG
1 G-TTTAGGATTTTAAAGTTCAAG
6734827 GTTTAGGATTTGT-AAGTT-AAG
1 GTTTAGGATTT-TAAAGTTCAAG
*
6734848 GGTTAGGATT
1 GTTTAGGATT
6734858 AAGGTTAGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.25
22 18 0.38
23 18 0.38
ACGTcount: A:0.29, C:0.01, G:0.28, T:0.42
Consensus pattern (22 bp):
GTTTAGGATTTTAAAGTTCAAG
Found at i:6734876 original size:33 final size:34
Alignment explanation
Indices: 6734822--6734918 Score: 117
Period size: 33 Copynumber: 2.9 Consensus size: 34
6734812 GTTTTAAAGT
* * * *
6734822 TTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAAGA
*
6734856 TTAAGG-TTAGGGTTTTTAAGTTAATGGTTAAGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAAGA
* *
6734889 TT-AGGATTAGAGTTTTTAAGTTTAGGGTTA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTA
6734919 TGGTTTTTTG
Statistics
Matches: 55, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
32 3 0.05
33 46 0.84
34 6 0.11
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (34 bp):
TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAAGA
Found at i:6734913 original size:21 final size:20
Alignment explanation
Indices: 6734883--6734950 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 20
6734873 AAGTTAATGG
*
6734883 TTAAGATTAGGATTAGAGTTT
1 TTAAGTTTAGGATTAG-GTTT
*
6734904 TTAAGTTTAGGGTTATGGTTT
1 TTAAGTTTAGGATTA-GGTTT
** *
6734925 TTTGGTTTAAGGTTTAGGGTTT
1 TTAAGTTT-AGGATTA-GGTTT
6734947 TTAA
1 TTAA
6734951 TTATAGAGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 3
0.77 0.17 0.06
Matches are distributed among these distances:
21 23 0.62
22 14 0.38
ACGTcount: A:0.24, C:0.00, G:0.26, T:0.50
Consensus pattern (20 bp):
TTAAGTTTAGGATTAGGTTT
Found at i:6735049 original size:22 final size:21
Alignment explanation
Indices: 6735013--6735282 Score: 76
Period size: 22 Copynumber: 12.7 Consensus size: 21
6735003 TTAAAATTCA
6735013 AAAGTTTAGGGTTTAAGGTTT
1 AAAGTTTAGGGTTTAAGGTTT
*
6735034 AAAGTTTAGAGTTTTAAGGTTT
1 AAAGTTTAG-GGTTTAAGGTTT
** * *
6735056 AGTGTTTTTA-AGTTAAAGG-TT
1 AAAG--TTTAGGGTTTAAGGTTT
* * *
6735077 -AGGATTAGGG-TT-AGTATTT
1 AAAGTTTAGGGTTTAAG-GTTT
**
6735096 TTAGATTTAGGGTTT-AGTGTTTT
1 AAAG-TTTAGGGTTTAAG-G-TTT
* * *
6735119 TAGGTTTAAGGTTTAAGGTTT
1 AAAGTTTAGGGTTTAAGGTTT
* * *
6735140 AAGGTTTAGTGTTTAGGGTTT
1 AAAGTTTAGGGTTTAAGGTTT
6735161 AAAGTTTAGGGTTTTTAA-G-TT
1 AAAGTTTAGGG--TTTAAGGTTT
* * *
6735182 ATGAG-TTATGATTTATA-GTTT
1 A-AAGTTTAGGGTTTA-AGGTTT
** ** *
6735203 AGGGTTTATGTTTTTTAGGTTT
1 AAAGTTTA-GGGTTTAAGGTTT
*
6735225 AAAGTTTATGGTTTTTAA-GTTT
1 AAAGTTTA-GG-GTTTAAGGTTT
*
6735247 AAAGTTTAGGGTTTTATGGTTT
1 AAAGTTTAGGG-TTTAAGGTTT
* *
6735269 ATAGTTTAAGGTTT
1 AAAGTTTAGGGTTT
6735283 TTAAGTTAAG
Statistics
Matches: 185, Mismatches: 42, Indels: 44
0.68 0.15 0.16
Matches are distributed among these distances:
17 2 0.01
18 4 0.02
19 7 0.04
20 6 0.03
21 69 0.37
22 77 0.42
23 16 0.09
24 4 0.02
ACGTcount: A:0.25, C:0.00, G:0.26, T:0.50
Consensus pattern (21 bp):
AAAGTTTAGGGTTTAAGGTTT
Found at i:6735067 original size:16 final size:15
Alignment explanation
Indices: 6735017--6735063 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
6735007 AATTCAAAAG
* *
6735017 TTTAGGGTTTA-AGG
1 TTTAAGGTTTAGAGT
*
6735031 TTTAAAGTTTAGAGT
1 TTTAAGGTTTAGAGT
*
6735046 TTTAAGGTTTAGTGT
1 TTTAAGGTTTAGAGT
6735061 TTT
1 TTT
6735064 TAAGTTAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 9 0.33
15 18 0.67
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (15 bp):
TTTAAGGTTTAGAGT
Found at i:6735167 original size:7 final size:7
Alignment explanation
Indices: 6735120--6735174 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
6735110 TAGTGTTTTT
6735120 AGGTTTA
1 AGGTTTA
6735127 AGGTTTA
1 AGGTTTA
6735134 AGGTTTA
1 AGGTTTA
6735141 AGGTTT-
1 AGGTTTA
6735147 AGTGTTTA
1 AG-GTTTA
*
6735155 GGGTTTA
1 AGGTTTA
*
6735162 AAGTTTA
1 AGGTTTA
*
6735169 GGGTTT
1 AGGTTT
6735175 TTAAGTTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 2 0.05
7 38 0.93
8 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (7 bp):
AGGTTTA
Found at i:6735176 original size:592 final size:586
Alignment explanation
Indices: 6734511--6735698 Score: 2048
Period size: 592 Copynumber: 2.0 Consensus size: 586
6734501 AAGGTTAGGA
* *
6734511 TTAGGGTTAGTATTTTTAAGTTAAGGGTTATGGTTTTTAGGTTTAGTGTTTAGGGTTTAAAGTTT
1 TTAGGGTTAGTATTTTTAAGTTAAGGGTTAAGGTTTTAAGGTTTAGTGTTTAGGGTTTAAAGTTT
6734576 AAGGTTTTTAAGTTATGAGTTATGATTTATAGTTTAGGGTTTATGTTTTTTAGGTTTAAAGTTTA
66 AAGGTTTTTAAGTTATGAGTTATGATTTATAGTTTAGGGTTTATGTTTTTTAGGTTTAAAGTTTA
6734641 TGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTTTTAAGTTAAGGGTTA
131 TGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTTTTAAGTTAAGGGTTA
6734706 GGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGTTTAGGGTTTAGGGTT
196 GGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGTTTAGGGTTTAGGGTT
6734771 TTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTAAGGTTTAGGAT
261 TTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTAAGGTTTAGGAT
*
6734836 TTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATGGTTAAGA-TTAGGATTAGA
326 TTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAGTTAAGATTTAGGATTAG-
*
6734900 GTTTTT-AAGTTTAGGGTTATGGTTTTTTGGTTTAAGGTTTAG-GGTTTTTAATTATAGAGTTTA
390 GTTTTTAAAGTTTA-GGTTATGGTTTTTTGGTTTAAGGTTTAGAGGTTTTTAATTATAAAGTTTA
* *
6734963 GTGTTTAGTGTTT-AATTTTTTAGGTTTAAGGTTTGGGGTTTTAAAATTCAAAAGTTTAGGGTTT
454 GTGTTTAGTGTTTAAATTTTTTAGATTTAAGGTTTGAGGTTTTAAAA-TC-AAA----A-GGTTT
6735027 AAGGTTTAAAGTTTAGAGTTTTAAGGTTTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGGTTAGT
512 AAGGTTTAAAGTTTAGAGTTTTAAGGTTTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGGTTAG-
6735092 A-TTTTTAGAT
576 AGTTTTTAGAT
* * *
6735102 TTAGGGTTTAGTGTTTTTAGGTTTAAGGTTTAAGG-TTTAAGGTTTAGTGTTTAGGGTTTAAAGT
1 TTAGGG-TTAGTATTTTTAAG-TTAAGGGTTAAGGTTTTAAGGTTTAGTGTTTAGGGTTTAAAGT
*
6735166 TTAGGGTTTTTAAGTTATGAGTTATGATTTATAGTTTAGGGTTTATGTTTTTTAGGTTTAAAGTT
64 TTAAGGTTTTTAAGTTATGAGTTATGATTTATAGTTTAGGGTTTATGTTTTTTAGGTTTAAAGTT
6735231 TATGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTTTTAAGTTAAGGGT
129 TATGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTTTTAAGTTAAGGGT
6735296 TAGGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGTTTAGGGTTTAGGG
194 TAGGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGTTTAGGGTTTAGGG
6735361 TTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTAAGGTTTAGG
259 TTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTAAGGTTTAGG
*
6735426 ATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAGTTAGGATTTAGGATTA
324 ATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAGTTAAGATTTAGGATTA
*
6735491 GGTTTTTAAAGTTTAGGTTATGGTTTTTTGGTTTAAGGTTTAGAGTTTTTTAATTATAAAGTTTA
389 GGTTTTTAAAGTTTAGGTTATGGTTTTTTGGTTTAAGGTTTAGAGGTTTTTAATTATAAAGTTTA
* * *
6735556 GTGTTTAGTGTTTAAATTTTTTATATTTAGGGTTTGAGGTTTTAAAATCCAAAGGTTTAAGGTTT
454 GTGTTTAGTGTTTAAATTTTTTAGATTTAAGGTTTGAGGTTTTAAAATCAAAAGGTTTAAGGTTT
* *
6735621 AGAGTTTAGAGTTTTAAGGTTTAGTGTTTTTAAGTTAAATGTTAGGATTAGGGTTAGAGTTTTTA
519 AAAGTTTAGAGTTTTAAGGTTTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGGTTAGAGTTTTTA
6735686 -AGT
584 GA-T
*
6735689 TAAGGGTTAG
1 TTAGGGTTAG
6735699 GATTAGGATT
Statistics
Matches: 571, Mismatches: 18, Indels: 21
0.94 0.03 0.03
Matches are distributed among these distances:
586 6 0.01
587 79 0.14
588 1 0.00
591 6 0.01
592 388 0.68
593 62 0.11
594 29 0.05
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.48
Consensus pattern (586 bp):
TTAGGGTTAGTATTTTTAAGTTAAGGGTTAAGGTTTTAAGGTTTAGTGTTTAGGGTTTAAAGTTT
AAGGTTTTTAAGTTATGAGTTATGATTTATAGTTTAGGGTTTATGTTTTTTAGGTTTAAAGTTTA
TGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTTTTAAGTTAAGGGTTA
GGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGTTTAGGGTTTAGGGTT
TTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTAAGGTTTAGGAT
TTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAGTTAAGATTTAGGATTAGG
TTTTTAAAGTTTAGGTTATGGTTTTTTGGTTTAAGGTTTAGAGGTTTTTAATTATAAAGTTTAGT
GTTTAGTGTTTAAATTTTTTAGATTTAAGGTTTGAGGTTTTAAAATCAAAAGGTTTAAGGTTTAA
AGTTTAGAGTTTTAAGGTTTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGGTTAGAGTTTTTAGA
T
Found at i:6735275 original size:15 final size:14
Alignment explanation
Indices: 6735187--6735282 Score: 59
Period size: 15 Copynumber: 6.6 Consensus size: 14
6735177 AAGTTATGAG
*
6735187 TTATGATTTATAGT
1 TTATGGTTTATAGT
*
6735201 TTAGGGTTTAT-GTT
1 TTATGGTTTATAG-T
* *
6735215 TTTTAGGTTTAAAGT
1 TTAT-GGTTTATAGT
*
6735230 TTATGGTTTTTAAGT
1 TTATGGTTTAT-AGT
** **
6735245 TTAAAGTTTAGGGTT
1 TTATGGTTTATAG-T
6735260 TTATGGTTTATAGT
1 TTATGGTTTATAGT
*
6735274 TTAAGGTTT
1 TTATGGTTT
6735283 TTAAGTTAAG
Statistics
Matches: 59, Mismatches: 18, Indels: 10
0.68 0.21 0.11
Matches are distributed among these distances:
13 1 0.02
14 27 0.46
15 30 0.51
16 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.22, T:0.55
Consensus pattern (14 bp):
TTATGGTTTATAGT
Found at i:6735283 original size:22 final size:22
Alignment explanation
Indices: 6735215--6735283 Score: 79
Period size: 22 Copynumber: 3.2 Consensus size: 22
6735205 GGTTTATGTT
*
6735215 TTTTA-GGTTTAAAGTTTATGG
1 TTTTATGGTTTAAAGTTTAAGG
* *
6735236 TTTT-TAAGTTTAAAGTTTAGGG
1 TTTTAT-GGTTTAAAGTTTAAGG
*
6735258 TTTTATGGTTTATAGTTTAAGG
1 TTTTATGGTTTAAAGTTTAAGG
6735280 TTTT
1 TTTT
6735284 TAAGTTAAGG
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
21 4 0.10
22 35 0.88
23 1 0.03
ACGTcount: A:0.23, C:0.00, G:0.22, T:0.55
Consensus pattern (22 bp):
TTTTATGGTTTAAAGTTTAAGG
Found at i:6735322 original size:33 final size:33
Alignment explanation
Indices: 6735280--6735342 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
6735270 TAGTTTAAGG
*
6735280 TTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGA
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
6735313 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
6735343 AGTGTTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (33 bp):
TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
Found at i:6735344 original size:7 final size:7
Alignment explanation
Indices: 6735334--6735384 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
6735324 AGGGTTAGAA
6735334 TTAGGGT
1 TTAGGGT
*
6735341 TTAGTGT
1 TTAGGGT
6735348 TTAGGGT
1 TTAGGGT
6735355 TTAGGGTT
1 TTAGGG-T
6735363 TTA-GGT
1 TTAGGGT
*
6735369 TTAGTGT
1 TTAGGGT
*
6735376 TTAAGGT
1 TTAGGGT
6735383 TT
1 TT
6735385 TAAAGTTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 4 0.11
7 29 0.78
8 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (7 bp):
TTAGGGT
Found at i:6735353 original size:14 final size:14
Alignment explanation
Indices: 6735334--6735384 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
6735324 AGGGTTAGAA
6735334 TTAGGGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6735348 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGTG-T
6735363 TTA-GGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6735376 TTAAGGTTT
1 TTAGGGTTT
6735385 TAAAGTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 4 0.12
14 25 0.76
15 4 0.12
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (14 bp):
TTAGGGTTTAGTGT
Found at i:6735358 original size:21 final size:20
Alignment explanation
Indices: 6735334--6735384 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
6735324 AGGGTTAGAA
6735334 TTAGGGTTTAGTGTTTAGGGT
1 TTAGGGTTTAG-GTTTAGGGT
*
6735355 TTAGGGTTTTAGGTTTAGTGT
1 TTAGGG-TTTAGGTTTAGGGT
*
6735376 TTAAGGTTT
1 TTAGGGTTT
6735385 TAAAGTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 3 0.11
21 19 0.70
22 5 0.19
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (20 bp):
TTAGGGTTTAGGTTTAGGGT
Found at i:6735385 original size:21 final size:22
Alignment explanation
Indices: 6735340--6735386 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
6735330 AGAATTAGGG
*
6735340 TTTAGTGTTTAGGGTTTAGGGT
1 TTTAGTGTTTAGGGTTTAAGGT
*
6735362 TTTAG-GTTTAGTGTTTAAGGT
1 TTTAGTGTTTAGGGTTTAAGGT
6735383 TTTA
1 TTTA
6735387 AAGTTCAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (22 bp):
TTTAGTGTTTAGGGTTTAAGGT
Found at i:6735406 original size:23 final size:22
Alignment explanation
Indices: 6735352--6735446 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 22
6735342 TAGTGTTTAG
* *
6735352 GGTTTAGGGTTTT-AGGTT-TA
1 GGTTTAGGGTTTTAAAGTTCAA
*
6735372 GTGTTTAAGGTTTTAAAGTTCAA
1 G-GTTTAGGGTTTTAAAGTTCAA
*
6735395 GGATTTAGGGTTTTAAAGTTTAA
1 GG-TTTAGGGTTTTAAAGTTCAA
*
6735418 GGTTTAGGATTTGT-AAGTT-AA
1 GGTTTAGGGTTT-TAAAGTTCAA
*
6735439 GGGTTAGG
1 GGTTTAGG
6735447 ATTAAGGTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.02
21 20 0.32
22 19 0.30
23 23 0.37
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.43
Consensus pattern (22 bp):
GGTTTAGGGTTTTAAAGTTCAA
Found at i:6735422 original size:7 final size:7
Alignment explanation
Indices: 6735346--6735423 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
6735336 AGGGTTTAGT
*
6735346 GTTTAGG
1 GTTTAAG
*
6735353 GTTTAGG
1 GTTTAAG
*
6735360 GTTTTAG
1 GTTTAAG
6735367 GTTT-AG
1 GTTTAAG
6735373 TGTTTAAG
1 -GTTTAAG
*
6735381 GTTTTAAA
1 G-TTTAAG
*
6735389 GTTCAAG
1 GTTTAAG
*
6735396 GATTTAGG
1 G-TTTAAG
*
6735404 GTTTTAAA
1 G-TTTAAG
6735412 GTTTAAG
1 GTTTAAG
6735419 GTTTA
1 GTTTA
6735424 GGATTTGTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
6 2 0.04
7 36 0.64
8 18 0.32
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:6735435 original size:22 final size:22
Alignment explanation
Indices: 6735346--6735449 Score: 83
Period size: 21 Copynumber: 4.8 Consensus size: 22
6735336 AGGGTTTAGT
* * *
6735346 GTTTAGGGTTTAGGGTTTT-AG
1 GTTTAAGGTTTAGGATTTTAAA
6735367 GTTT-AGTGTTTAAGG-TTTTAAA
1 GTTTAAG-GTTT-AGGATTTTAAA
* *
6735389 GTTCAAGGATTTAGGGTTTTAAA
1 GTTTAAGG-TTTAGGATTTTAAA
6735412 GTTTAAGGTTTAGGATTTGT-AA
1 GTTTAAGGTTTAGGATTT-TAAA
*
6735434 G-TTAAGGGTTAGGATT
1 GTTTAAGGTTTAGGATT
6735450 AAGGTTAGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
20 1 0.01
21 26 0.37
22 23 0.33
23 20 0.29
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
GTTTAAGGTTTAGGATTTTAAA
Found at i:6735440 original size:21 final size:22
Alignment explanation
Indices: 6735374--6735449 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
6735364 TAGGTTTAGT
6735374 GTTTAAGG-TTTTAAAGTTCAAG
1 GTTT-AGGATTTTAAAGTTCAAG
* *
6735396 GATTTAGGGTTTTAAAGTTTAAG
1 G-TTTAGGATTTTAAAGTTCAAG
6735419 GTTTAGGATTTGT-AAGTT-AAG
1 GTTTAGGATTT-TAAAGTTCAAG
*
6735440 GGTTAGGATT
1 GTTTAGGATT
6735450 AAGGTTAGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.25
22 18 0.38
23 18 0.38
ACGTcount: A:0.29, C:0.01, G:0.28, T:0.42
Consensus pattern (22 bp):
GTTTAGGATTTTAAAGTTCAAG
Found at i:6735468 original size:33 final size:34
Alignment explanation
Indices: 6735414--6735499 Score: 104
Period size: 33 Copynumber: 2.6 Consensus size: 34
6735404 GTTTTAAAGT
* * * *
6735414 TTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGAGTTAGGA
*
6735448 TTAAGG-TTAGGGTTTTTAAGTTAATAGTTAGGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGAGTTAGGA
*
6735481 TTTAGGATTA-GGTTTTTAA
1 TTAAGGATTAGGGTTTTTAA
6735500 AGTTTAGGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
33 37 0.80
34 9 0.20
ACGTcount: A:0.29, C:0.00, G:0.28, T:0.43
Consensus pattern (34 bp):
TTAAGGATTAGGGTTTTTAAGTTAAGAGTTAGGA
Found at i:6735531 original size:147 final size:146
Alignment explanation
Indices: 6734626--6734939 Score: 334
Period size: 147 Copynumber: 2.1 Consensus size: 146
6734616 TTATGTTTTT
** * * * **
6734626 TAGGTTTAAAGTTTATGGTTTTTAAGTTTAAAGTTTAGGGTTTTATGGTTTATAGTTTAAGGTTT
1 TAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAAAGTTTATAGTTTAAGGTTT
* * * * *
6734691 TTAAGTTAAGGGTTAGGATTAGGGTTTGGATTTTTAAGTTAAGGGTTAGAATTAGGGTTTAGTGT
66 GTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAGTTAGAATTAGGGATTAGTGT
** *
6734756 TTAGGGTTTAGGGTTT
131 TTAAAGTTTAGGGTTA
*
6734772 TAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAAAGTTTA-AGGTTT-AGGA
1 TAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAAG-TTTAGGGTTTTAAAGTTTATA-GTTTAAGG-
*
6734835 TTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATG-GTTA-AGATTA-GGATT
63 TTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAA-GAGTTAGA-ATTAGGGATT
* *
6734897 AGAGTTTTTAAGTTTAGGGTTA
126 AGTG-TTTAAAGTTTAGGGTTA
**
6734919 T-GGTTTTTTGGTTTAAGGTTT
1 TAGGTTTAGT-GTTTAAGGTTT
6734940 AGGGTTTTTA
Statistics
Matches: 141, Mismatches: 20, Indels: 13
0.81 0.11 0.07
Matches are distributed among these distances:
146 45 0.32
147 95 0.67
148 1 0.01
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.46
Consensus pattern (146 bp):
TAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAAAGTTTATAGTTTAAGGTTT
GTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAGTTAGAATTAGGGATTAGTGT
TTAAAGTTTAGGGTTA
Found at i:6735688 original size:33 final size:33
Alignment explanation
Indices: 6735641--6735887 Score: 395
Period size: 33 Copynumber: 7.4 Consensus size: 33
6735631 GTTTTAAGGT
* ** *
6735641 TTAGTGTTTTTAAGTTAAATGTTAGGATTAGGG
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
*
6735674 TTAGAGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
6735707 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
6735740 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
6735773 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
6735806 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
* * *
6735839 TTAGGATTTTTAAGTTAAGGGTTATGGTTTTTAGGT
1 TTAGGGTTTTTAAGTTAAGGGTTA-GG--ATTAGGA
6735875 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
6735888 TTTTATGGTT
Statistics
Matches: 202, Mismatches: 9, Indels: 3
0.94 0.04 0.01
Matches are distributed among these distances:
33 183 0.91
34 2 0.01
36 17 0.08
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.43
Consensus pattern (33 bp):
TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
Found at i:6735891 original size:22 final size:22
Alignment explanation
Indices: 6735866--6735950 Score: 86
Period size: 22 Copynumber: 3.8 Consensus size: 22
6735856 AGGGTTATGG
6735866 TTTTTAGGTTTAGGGTTTTTAA
1 TTTTTAGGTTTAGGGTTTTTAA
*
6735888 -TTTTATGGTTTAGAGTTTTTAA
1 TTTTTA-GGTTTAGGGTTTTTAA
* *
6735910 TGTTTAGTGTTTAAGG--TTTAA
1 TTTTTAG-GTTTAGGGTTTTTAA
6735931 GGTTTTTAGGTTTAGGGTTT
1 --TTTTTAGGTTTAGGGTTT
6735951 AGGGTTTAGG
Statistics
Matches: 50, Mismatches: 6, Indels: 12
0.74 0.09 0.18
Matches are distributed among these distances:
21 10 0.20
22 23 0.46
23 16 0.32
24 1 0.02
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (22 bp):
TTTTTAGGTTTAGGGTTTTTAA
Found at i:6735915 original size:7 final size:7
Alignment explanation
Indices: 6735905--6736113 Score: 83
Period size: 7 Copynumber: 29.4 Consensus size: 7
6735895 GTTTAGAGTT
*
6735905 TTTAATG
1 TTTAAGG
6735912 TTT-AGTG
1 TTTAAG-G
6735919 TTTAAGG
1 TTTAAGG
6735926 TTTAAGG
1 TTTAAGG
*
6735933 TTTTTAGG
1 -TTTAAGG
*
6735941 TTTAGGG
1 TTTAAGG
*
6735948 TTTAGGG
1 TTTAAGG
*
6735955 TTTAGGG
1 TTTAAGG
6735962 TTTAAGG
1 TTTAAGG
*
6735969 TTTATGG
1 TTTAAGG
6735976 -TTAATGG
1 TTTAA-GG
6735983 TTTTTAA-G
1 --TTTAAGG
*
6735991 -TTAGGG
1 TTTAAGG
6735997 TTTAAGG
1 TTTAAGG
*
6736004 TTTAA-A
1 TTTAAGG
* *
6736010 TGTTATGT
1 T-TTAAGG
*
6736018 TTTTAGG
1 TTTAAGG
6736025 TTT-AGAG
1 TTTAAG-G
6736032 TTTAAGG
1 TTTAAGG
*
6736039 TTTTAAAG
1 -TTTAAGG
6736047 TTTAAAGG
1 TTT-AAGG
*
6736055 TTT-AGA
1 TTTAAGG
*
6736061 TTTATGG
1 TTTAAGG
* *
6736068 TTTATGA
1 TTTAAGG
*
6736075 TTTAGAGT
1 TTTA-AGG
*
6736083 TTTATGG
1 TTTAAGG
6736090 TTT-AGAG
1 TTTAAG-G
*
6736097 TTTAGGG
1 TTTAAGG
*
6736104 TTTAGGG
1 TTTAAGG
6736111 TTT
1 TTT
6736114 TTTAGTTTAG
Statistics
Matches: 156, Mismatches: 27, Indels: 38
0.71 0.12 0.17
Matches are distributed among these distances:
5 3 0.02
6 14 0.09
7 105 0.67
8 30 0.19
10 4 0.03
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (7 bp):
TTTAAGG
Found at i:6735928 original size:14 final size:14
Alignment explanation
Indices: 6735905--6736386 Score: 98
Period size: 14 Copynumber: 33.7 Consensus size: 14
6735895 GTTTAGAGTT
* *
6735905 TTTAATGTTTAGTG
1 TTTAAGGTTTAGGG
*
6735919 TTTAAGGTTTAAGGT
1 TTTAAGGTTT-AGGG
*
6735934 TTTTAGGTTTAGGG
1 TTTAAGGTTTAGGG
*
6735948 TTTAGGGTTTAGGG
1 TTTAAGGTTTAGGG
*
6735962 TTTAAGGTTTATGG
1 TTTAAGGTTTAGGG
*
6735976 -TTAATGGTTTTTA-AG
1 TTTAA-GG--TTTAGGG
* *
6735991 -TTAGGGTTTAAGG
1 TTTAAGGTTTAGGG
* * *
6736004 TTTAA-ATGTTATGT
1 TTTAAGGT-TTAGGG
* *
6736018 TTTTAGGTTTAGAG
1 TTTAAGGTTTAGGG
**
6736032 TTTAAGGTTTTAAAG
1 TTTAAGG-TTTAGGG
*
6736047 TTTAAAGGTTTA-GA
1 TTT-AAGGTTTAGGG
* * *
6736061 TTTATGGTTTATGA
1 TTTAAGGTTTAGGG
* *
6736075 TTTAGAGTTTTATGG
1 TTTA-AGGTTTAGGG
6736090 TTT-AGAGTTTAGGG
1 TTTAAG-GTTTAGGG
* ***
6736104 TTTAGGGTTTTTTAG
1 TTTAAGG-TTTAGGG
*
6736119 TTT-AGGGTTAGGG
1 TTTAAGGTTTAGGG
*
6736132 -TTAGAGTTTTTAGTGAAG
1 TTTA-AG-GTTTAG-G--G
* *
6736150 GTT-AGGATTAGGG
1 TTTAAGGTTTAGGG
*
6736163 -TT-AGTGTTTTA-AG
1 TTTAAG-G-TTTAGGG
* *
6736176 -TTAAGGGTTATGG
1 TTTAAGGTTTAGGG
*
6736189 TTTTAGGTTTAGGG
1 TTTAAGGTTTAGGG
* ***
6736203 TTTATGGTTTTAAAT
1 TTTAAGG-TTTAGGG
*
6736218 TTTAAAGTTTAGGG
1 TTTAAGGTTTAGGG
* *
6736232 TTTTCATGTTTAGGG
1 -TTTAAGGTTTAGGG
* **
6736247 TTTAGGGTTTAATGTTT
1 TTTAAGGTTT-A-G-GG
*
6736264 TTTAA-GTTAAGGG
1 TTTAAGGTTTAGGG
* * *
6736277 -TTATGATTTATGG
1 TTTAAGGTTTAGGG
* **
6736290 TTTAGGGTTTATGTTT
1 TTTAAGGTTTA-G-GG
*
6736306 TTTAA-GTTTAGAG
1 TTTAAGGTTTAGGG
** *
6736319 TTTATGATTTTTTA-AG
1 TTTA--A-GGTTTAGGG
6736335 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
6736349 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
*
6736363 TTTAAGGTTTAAGG
1 TTTAAGGTTTAGGG
6736377 TTTAAGGTTT
1 TTTAAGGTTT
6736387 TTAAGTTAAG
Statistics
Matches: 338, Mismatches: 89, Indels: 82
0.66 0.17 0.16
Matches are distributed among these distances:
12 16 0.05
13 38 0.11
14 163 0.48
15 81 0.24
16 27 0.08
17 10 0.03
18 1 0.00
19 2 0.01
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:6735951 original size:22 final size:21
Alignment explanation
Indices: 6735912--6735957 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 21
6735902 GTTTTTAATG
6735912 TTTAGTGTTTAAGGTTTAAGGTT
1 TTTAG-GTTT-AGGTTTAAGGTT
*
6735935 TTTAGGTTTAGGGTTTAGGGTT
1 TTTAGGTTTA-GGTTTAAGGTT
6735957 T
1 T
6735958 AGGGTTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 1 0.05
22 15 0.71
23 5 0.24
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.52
Consensus pattern (21 bp):
TTTAGGTTTAGGTTTAAGGTT
Found at i:6735965 original size:21 final size:21
Alignment explanation
Indices: 6735911--6736511 Score: 116
Period size: 21 Copynumber: 28.6 Consensus size: 21
6735901 AGTTTTTAAT
*
6735911 GTTTAGTGTTTAAGGTTTAAGG
1 GTTTAGGGTTTAAGGTTT-AGG
* *
6735933 TTTTTA-GGTTTAGGGTTTAGG
1 -GTTTAGGGTTTAAGGTTTAGG
*
6735954 GTTTAGGGTTTAAGGTTTATG
1 GTTTAGGGTTTAAGGTTTAGG
* *
6735975 GTTAATGGTTTTTAA-G-TTAGG
1 GTTTA-GG-GTTTAAGGTTTAGG
* * *
6735996 GTTTAAGGTTTAA-ATGTTATGT
1 GTTTAGGGTTTAAGGT-TTA-GG
*
6736018 TTTTA-GGTTT-AGAGTTTAAGG
1 GTTTAGGGTTTAAG-GTTT-AGG
* **
6736039 TTTTAAAGTTTAAAGGTTTA-G
1 GTTTAGGGTTT-AAGGTTTAGG
* * * *
6736060 ATTTATGGTTTATGATTTAGAG
1 GTTTAGGGTTTAAGGTTTAG-G
* *
6736082 TTTTATGGTTT-AGAGTTTAGG
1 GTTTAGGGTTTAAG-GTTTAGG
*
6736103 GTTTAGGGTTTTTTA-GTTTAGG
1 GTTTAGGG--TTTAAGGTTTAGG
*
6736125 G-TTAGGG-TTAGAGTTTTTA--
1 GTTTAGGGTTTA-AG-GTTTAGG
* * *
6736144 G-TGAAGG-TT-AGGATTAGG
1 GTTTAGGGTTTAAGGTTTAGG
* *
6736162 G-TTAGTGTTTTAA-GTTAAGG
1 GTTTAG-GGTTTAAGGTTTAGG
* *
6736182 G-TTATGGTTTTAGGTTTAGG
1 GTTTAGGGTTTAAGGTTTAGG
* ** **
6736202 GTTTATGGTTTTAAATTTTAAA
1 GTTTA-GGGTTTAAGGTTTAGG
* *
6736224 GTTTAGGGTTTTCATGTTTAGG
1 GTTTAGGG-TTTAAGGTTTAGG
* *
6736246 GTTTAGGGTTTAATGTTTTTTA-A
1 GTTTAGGGTTTAA-G--GTTTAGG
* * * *
6736269 GTTAAGGG-TTATGATTTATG
1 GTTTAGGGTTTAAGGTTTAGG
* * *
6736289 GTTTAGGGTTTATGTTTTTTA-A
1 GTTTAGGGTTTAAG--GTTTAGG
* * *
6736311 GTTTAGAGTTTATGATTT---
1 GTTTAGGGTTTAAGGTTTAGG
*
6736329 -TTTA-AGTTTAAGGTTTAGG
1 GTTTAGGGTTTAAGGTTTAGG
* * *
6736348 GTTTAAGGTTTAGGGTTTAAG
1 GTTTAGGGTTTAAGGTTTAGG
* *
6736369 GTTTAAGGTTTAAGGTTTTTA-A
1 GTTTAGGGTTTAAGG--TTTAGG
* *
6736391 GTTAAGGG-TTAA-GATTAGG
1 GTTTAGGGTTTAAGGTTTAGG
* *
6736410 G-TTAGGATTTTTAA-GTTAAGG
1 GTTTAGG--GTTTAAGGTTTAGG
6736431 GTTAGAACTAGGGTTTAAGGTTTAGG
1 GTT-----TAGGGTTTAAGGTTTAGG
* * *
6736457 GTTTATGTTTTTAGGTTTAGG
1 GTTTAGGGTTTAAGGTTTAGG
*
6736478 G-TTAGAGTTTTAAGGTTTTAGG
1 GTTTAG-GGTTTAAGG-TTTAGG
6736500 GTTTAGGGTTTA
1 GTTTAGGGTTTA
6736512 TGATTTTTAA
Statistics
Matches: 428, Mismatches: 92, Indels: 117
0.67 0.14 0.18
Matches are distributed among these distances:
16 13 0.03
17 6 0.01
18 12 0.03
19 24 0.06
20 48 0.11
21 151 0.35
22 114 0.27
23 35 0.08
24 7 0.02
25 5 0.01
26 9 0.02
27 4 0.01
ACGTcount: A:0.23, C:0.00, G:0.29, T:0.48
Consensus pattern (21 bp):
GTTTAGGGTTTAAGGTTTAGG
Found at i:6735995 original size:35 final size:34
Alignment explanation
Indices: 6735954--6736041 Score: 108
Period size: 35 Copynumber: 2.5 Consensus size: 34
6735944 AGGGTTTAGG
6735954 GTTTAGGGTTTAAGGTTT-ATGGTTAATGGTTTTTAA
1 GTTTAGGGTTTAAGGTTTAAT-GTT-AT-GTTTTTAA
*
6735990 G-TTAGGGTTTAAGGTTTAAATGTTATGTTTTTAG
1 GTTTAGGGTTTAAGGTTT-AATGTTATGTTTTTAA
*
6736024 GTTTAGAGTTTAAGGTTT
1 GTTTAGGGTTTAAGGTTT
6736042 TAAAGTTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
34 8 0.17
35 33 0.70
36 4 0.09
37 2 0.04
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (34 bp):
GTTTAGGGTTTAAGGTTTAATGTTATGTTTTTAA
Found at i:6736161 original size:31 final size:31
Alignment explanation
Indices: 6736120--6736181 Score: 88
Period size: 31 Copynumber: 2.0 Consensus size: 31
6736110 GTTTTTTAGT
* *
6736120 TTAGGGTTAGGGTTAGAGTTTTTAGTGAAGG
1 TTAGGATTAGGGTTAGAGTTTTAAGTGAAGG
* *
6736151 TTAGGATTAGGGTTAGTGTTTTAAGTTAAGG
1 TTAGGATTAGGGTTAGAGTTTTAAGTGAAGG
6736182 GTTATGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.35, T:0.40
Consensus pattern (31 bp):
TTAGGATTAGGGTTAGAGTTTTAAGTGAAGG
Found at i:6736278 original size:23 final size:22
Alignment explanation
Indices: 6736250--6736345 Score: 90
Period size: 23 Copynumber: 4.4 Consensus size: 22
6736240 TTTAGGGTTT
6736250 AGGGTTTAATGTTTTTTAAGTTA
1 AGGGTTT-ATGTTTTTTAAGTTA
* * * *
6736273 AGGG-TTATGATTTAT-GGTTT
1 AGGGTTTATGTTTTTTAAGTTA
*
6736293 AGGGTTTATGTTTTTTAAGTTT
1 AGGGTTTATGTTTTTTAAGTTA
*
6736315 AGAGTTTATGATTTTTTAAGTTTA
1 AGGGTTTATG-TTTTTTAAG-TTA
6736339 A-GGTTTA
1 AGGGTTTA
6736346 GGGTTTAAGG
Statistics
Matches: 59, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
20 7 0.12
21 16 0.27
22 15 0.25
23 18 0.31
24 3 0.05
ACGTcount: A:0.24, C:0.00, G:0.23, T:0.53
Consensus pattern (22 bp):
AGGGTTTATGTTTTTTAAGTTA
Found at i:6736292 original size:94 final size:95
Alignment explanation
Indices: 6736169--6736358 Score: 258
Period size: 94 Copynumber: 2.0 Consensus size: 95
6736159 AGGGTTAGTG
* * *
6736169 TTTTAAGTTAAGGGTTATGGTTTTAGGTTTAGGGTTTATGGTTTTAAATTTTAAAGTTTA-GGGT
1 TTTTAAGTTAAGGGTTATGATTTTAGGTTTAGGGTTTATGGTTTTAAAGTTTAAAGTTTATGAGT
* * *
6736233 TTTCATGTTTAGGGTTTAGGGTTTAATGTT
66 TTTCAAGTTTAAGGTTTAGGGTTTAAGGTT
* * * *
6736263 TTTTAAGTTAAGGGTTATGA-TTTATGGTTTAGGGTTTATGTTTTTTAAGTTTAGAGTTTATGAT
1 TTTTAAGTTAAGGGTTATGATTTTA-GGTTTAGGGTTTATGGTTTTAAAGTTTAAAGTTTATGAG
*
6736327 TTTTTAAGTTTAAGGTTTAGGGTTTAAGGTT
65 TTTTCAAGTTTAAGGTTTAGGGTTTAAGGTT
6736358 T
1 T
6736359 AGGGTTTAAG
Statistics
Matches: 83, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
93 4 0.05
94 50 0.60
95 29 0.35
ACGTcount: A:0.22, C:0.01, G:0.25, T:0.52
Consensus pattern (95 bp):
TTTTAAGTTAAGGGTTATGATTTTAGGTTTAGGGTTTATGGTTTTAAAGTTTAAAGTTTATGAGT
TTTCAAGTTTAAGGTTTAGGGTTTAAGGTT
Found at i:6736293 original size:65 final size:66
Alignment explanation
Indices: 6736218--6736366 Score: 169
Period size: 65 Copynumber: 2.3 Consensus size: 66
6736208 GGTTTTAAAT
* * *
6736218 TTTAAAGTTTAGGGTTT-TCATGTTTAGGGTTTAGGGTTTAATG-TTTTTTAAG-TTAAGGGTTA
1 TTTAAGGTTTAGGGTTTATCATGTTTA-AGTTTAGAGTTT-ATGATTTTTTAAGTTTAAGGGTTA
*
6736280 TGA
64 GGA
* ** * *
6736283 TTTATGGTTTAGGGTTTATGTTTTTTAAGTTTAGAGTTTATGATTTTTTAAGTTTAAGGTTTAGG
1 TTTAAGGTTTAGGGTTTATCATGTTTAAGTTTAGAGTTTATGATTTTTTAAGTTTAAGGGTTAGG
*
6736348 G
66 A
6736349 TTTAAGGTTTAGGGTTTA
1 TTTAAGGTTTAGGGTTTA
6736367 AGGTTTAAGG
Statistics
Matches: 70, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
64 3 0.04
65 34 0.49
66 33 0.47
ACGTcount: A:0.22, C:0.01, G:0.26, T:0.52
Consensus pattern (66 bp):
TTTAAGGTTTAGGGTTTATCATGTTTAAGTTTAGAGTTTATGATTTTTTAAGTTTAAGGGTTAGG
A
Found at i:6736308 original size:43 final size:44
Alignment explanation
Indices: 6736240--6736328 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 44
6736230 GGTTTTCATG
6736240 TTTAGGGTTTAGGGTTTAATGTTTTTTAAGTTAAG-GGTTATGA
1 TTTAGGGTTTAGGGTTTAATGTTTTTTAAGTTAAGAGGTTATGA
* * *
6736283 TTTATGGTTTAGGGTTT-ATGTTTTTTAAGTTTAGAGTTTATGA
1 TTTAGGGTTTAGGGTTTAATGTTTTTTAAGTTAAGAGGTTATGA
6736326 TTT
1 TTT
6736329 TTTAAGTTTA
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
42 16 0.38
43 26 0.62
ACGTcount: A:0.21, C:0.00, G:0.25, T:0.54
Consensus pattern (44 bp):
TTTAGGGTTTAGGGTTTAATGTTTTTTAAGTTAAGAGGTTATGA
Found at i:6736350 original size:7 final size:7
Alignment explanation
Indices: 6736329--6736386 Score: 91
Period size: 7 Copynumber: 8.4 Consensus size: 7
6736319 TTTATGATTT
6736329 TTTAA-G
1 TTTAAGG
6736335 TTTAAGG
1 TTTAAGG
*
6736342 TTTAGGG
1 TTTAAGG
6736349 TTTAAGG
1 TTTAAGG
*
6736356 TTTAGGG
1 TTTAAGG
6736363 TTTAAGG
1 TTTAAGG
6736370 TTTAAGG
1 TTTAAGG
6736377 TTTAAGG
1 TTTAAGG
6736384 TTT
1 TTT
6736387 TTAAGTTAAG
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
6 5 0.11
7 42 0.89
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:6736458 original size:14 final size:14
Alignment explanation
Indices: 6736439--6736511 Score: 60
Period size: 14 Copynumber: 5.1 Consensus size: 14
6736429 GGGTTAGAAC
6736439 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTT
* *
6736453 TAGGGTTTATGTTTT
1 TAGGGTTTAAG-GTT
*
6736468 TA-GGTTT-AGGGT
1 TAGGGTTTAAGGTT
*
6736480 TAGAGTTTTAAGGTTT
1 TAG-GGTTTAAGG-TT
*
6736496 TAGGGTTTAGGGTT
1 TAGGGTTTAAGGTT
6736510 TA
1 TA
6736512 TGATTTTTAA
Statistics
Matches: 45, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
12 3 0.07
13 1 0.02
14 23 0.51
15 14 0.31
16 4 0.09
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.48
Consensus pattern (14 bp):
TAGGGTTTAAGGTT
Found at i:6736560 original size:29 final size:29
Alignment explanation
Indices: 6736439--6736569 Score: 90
Period size: 29 Copynumber: 4.6 Consensus size: 29
6736429 GGGTTAGAAC
* *** *
6736439 TAGGGTTTAAGGTTTAGGGTTTATGTTTT
1 TAGGGTTTAGGGTTTAATATTTATGATTT
* *
6736468 TA-GGTTTAGGG-TTAGAGT-TTTAAGGTTT
1 TAGGGTTTAGGGTTTA-A-TATTTATGATTT
* * **
6736496 TAGGGTTTAGGGTTT-ATGATTTTTAAGCT
1 TAGGGTTTAGGGTTTAAT-ATTTATGATTT
*
6736525 TAAGGTTTAGGGTTTAATATTTATGATTT
1 TAGGGTTTAGGGTTTAATATTTATGATTT
*
6736554 TAGGGTTTAGAGTTTA
1 TAGGGTTTAGGGTTTA
6736570 GAGGTTAAAG
Statistics
Matches: 77, Mismatches: 18, Indels: 14
0.71 0.17 0.13
Matches are distributed among these distances:
27 4 0.05
28 19 0.25
29 50 0.65
30 4 0.05
ACGTcount: A:0.22, C:0.01, G:0.28, T:0.49
Consensus pattern (29 bp):
TAGGGTTTAGGGTTTAATATTTATGATTT
Found at i:6736645 original size:22 final size:22
Alignment explanation
Indices: 6736608--6736660 Score: 72
Period size: 22 Copynumber: 2.5 Consensus size: 22
6736598 AAGGTTAGGA
6736608 TTAGGG-TTAGTATTTTTAGAT
1 TTAGGGTTTAGTATTTTTAGAT
* *
6736629 TTAGGGTTTAGTGTTTTTAGGT
1 TTAGGGTTTAGTATTTTTAGAT
*
6736651 TTAAGGTTTA
1 TTAGGGTTTA
6736661 AGGTTTAAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 6 0.21
22 22 0.79
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (22 bp):
TTAGGGTTTAGTATTTTTAGAT
Found at i:6736694 original size:7 final size:7
Alignment explanation
Indices: 6736647--6736701 Score: 67
Period size: 7 Copynumber: 7.9 Consensus size: 7
6736637 TAGTGTTTTT
6736647 AGGTTTA
1 AGGTTTA
6736654 AGGTTTA
1 AGGTTTA
6736661 AGGTTTA
1 AGGTTTA
6736668 AGGTTT-
1 AGGTTTA
6736674 AGTGTTTA
1 AG-GTTTA
*
6736682 GGGTTTA
1 AGGTTTA
*
6736689 AAGTTTA
1 AGGTTTA
*
6736696 GGGTTT
1 AGGTTT
6736702 TTAAGTTATG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
6 2 0.05
7 38 0.93
8 1 0.02
ACGTcount: A:0.24, C:0.00, G:0.31, T:0.45
Consensus pattern (7 bp):
AGGTTTA
Found at i:6736751 original size:22 final size:22
Alignment explanation
Indices: 6736733--6736811 Score: 72
Period size: 22 Copynumber: 3.5 Consensus size: 22
6736723 ATAGTTTAGG
6736733 GTTTAGGTTTTTTAGGTTTAAA
1 GTTTAGGTTTTTTAGGTTTAAA
* *
6736755 GTTT-GTGGTTTTTAAGTTTAAA
1 GTTTAG-GTTTTTTAGGTTTAAA
* **
6736777 GTTTAGG-GTTTTATGGTTTATG
1 GTTTAGGTTTTTTA-GGTTTAAA
6736799 GTTTAAGGTTTTT
1 GTTT-AGGTTTTT
6736812 AAGTTAAGGG
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
21 6 0.13
22 32 0.71
23 4 0.09
24 3 0.07
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (22 bp):
GTTTAGGTTTTTTAGGTTTAAA
Found at i:6736781 original size:44 final size:44
Alignment explanation
Indices: 6736733--6736816 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 44
6736723 ATAGTTTAGG
* **
6736733 GTTTA-GGTTTTTTAGGTTTAAAGTTTGTGGTTTTTAAGTTTAAA
1 GTTTAGGGTTTTAT-GGTTTAAAGTTTAAGGTTTTTAAGTTTAAA
**
6736777 GTTTAGGGTTTTATGGTTTATGGTTTAAGGTTTTTAAGTT
1 GTTTAGGGTTTTATGGTTTAAAGTTTAAGGTTTTTAAGTT
6736817 AAGGGTTAGG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
44 27 0.79
45 7 0.21
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (44 bp):
GTTTAGGGTTTTATGGTTTAAAGTTTAAGGTTTTTAAGTTTAAA
Found at i:6736849 original size:33 final size:33
Alignment explanation
Indices: 6736807--6736869 Score: 117
Period size: 33 Copynumber: 1.9 Consensus size: 33
6736797 TGGTTTAAGG
*
6736807 TTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGA
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
6736840 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
1 TTTTTAAGTTAAGGGTTAGAATTAGGGTTT
6736870 AGTGTTTAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.44
Consensus pattern (33 bp):
TTTTTAAGTTAAGGGTTAGAATTAGGGTTTGGA
Found at i:6736871 original size:7 final size:7
Alignment explanation
Indices: 6736861--6736911 Score: 59
Period size: 7 Copynumber: 7.3 Consensus size: 7
6736851 AGGGTTAGAA
6736861 TTAGGGT
1 TTAGGGT
*
6736868 TTAGTGT
1 TTAGGGT
6736875 TTAGGGT
1 TTAGGGT
6736882 TTAGGGTT
1 TTAGGG-T
6736890 TTA-GGT
1 TTAGGGT
*
6736896 TTAGTGT
1 TTAGGGT
*
6736903 TTAAGGT
1 TTAGGGT
6736910 TT
1 TT
6736912 TAAAGTTCAA
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
6 4 0.11
7 29 0.78
8 4 0.11
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (7 bp):
TTAGGGT
Found at i:6736880 original size:14 final size:14
Alignment explanation
Indices: 6736861--6736911 Score: 68
Period size: 14 Copynumber: 3.6 Consensus size: 14
6736851 AGGGTTAGAA
6736861 TTAGGGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6736875 TTAGGGTTTAGGGTT
1 TTAGGGTTTAGTG-T
6736890 TTA-GGTTTAGTGT
1 TTAGGGTTTAGTGT
*
6736903 TTAAGGTTT
1 TTAGGGTTT
6736912 TAAAGTTCAA
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
13 4 0.12
14 25 0.76
15 4 0.12
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (14 bp):
TTAGGGTTTAGTGT
Found at i:6736885 original size:21 final size:20
Alignment explanation
Indices: 6736861--6736911 Score: 66
Period size: 21 Copynumber: 2.5 Consensus size: 20
6736851 AGGGTTAGAA
6736861 TTAGGGTTTAGTGTTTAGGGT
1 TTAGGGTTTAG-GTTTAGGGT
*
6736882 TTAGGGTTTTAGGTTTAGTGT
1 TTAGGG-TTTAGGTTTAGGGT
*
6736903 TTAAGGTTT
1 TTAGGGTTT
6736912 TAAAGTTCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
20 3 0.11
21 19 0.70
22 5 0.19
ACGTcount: A:0.16, C:0.00, G:0.33, T:0.51
Consensus pattern (20 bp):
TTAGGGTTTAGGTTTAGGGT
Found at i:6736912 original size:21 final size:22
Alignment explanation
Indices: 6736867--6736913 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
6736857 AGAATTAGGG
*
6736867 TTTAGTGTTTAGGGTTTAGGGT
1 TTTAGTGTTTAGGGTTTAAGGT
*
6736889 TTTAG-GTTTAGTGTTTAAGGT
1 TTTAGTGTTTAGGGTTTAAGGT
6736910 TTTA
1 TTTA
6736914 AAGTTCAAGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 18 0.78
22 5 0.22
ACGTcount: A:0.17, C:0.00, G:0.30, T:0.53
Consensus pattern (22 bp):
TTTAGTGTTTAGGGTTTAAGGT
Found at i:6736933 original size:23 final size:22
Alignment explanation
Indices: 6736879--6736973 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 22
6736869 TAGTGTTTAG
* *
6736879 GGTTTAGGGTTTT-AGGTT-TA
1 GGTTTAGGGTTTTAAAGTTCAA
*
6736899 GTGTTTAAGGTTTTAAAGTTCAA
1 G-GTTTAGGGTTTTAAAGTTCAA
*
6736922 GGATTTAGGGTTTTAAAGTTTAA
1 GG-TTTAGGGTTTTAAAGTTCAA
*
6736945 GGTTTAGGATTTGT-AAGTT-AA
1 GGTTTAGGGTTT-TAAAGTTCAA
*
6736966 GGGTTAGG
1 GGTTTAGG
6736974 ATTAAGGTTA
Statistics
Matches: 63, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
20 1 0.02
21 20 0.32
22 19 0.30
23 23 0.37
ACGTcount: A:0.25, C:0.01, G:0.31, T:0.43
Consensus pattern (22 bp):
GGTTTAGGGTTTTAAAGTTCAA
Found at i:6736943 original size:147 final size:147
Alignment explanation
Indices: 6736726--6737012 Score: 380
Period size: 147 Copynumber: 2.0 Consensus size: 147
6736716 ATGATTTATA
* ** * * *
6736726 GTTTAGGGTTTAGGTTTTTTAGGTTTAAAGTTTGTGGTTTTTAAGTTTAAAGTTTAGGGTTTTAT
1 GTTTAGGGTTTAGGTGTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAA
* * * * * *
6736791 GGTTTATGGTTTAAGG-TTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGATTTTTAAGTTAAGGG
66 AGTTTAAGGTTT-AGGATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAG
6736855 TTAGAATTAGGGTTTAGT
130 TTAGAATTAGGGTTTAGT
** *
6736873 GTTTAGGGTTTAGG-GTTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTA
1 GTTTAGGGTTTAGGTGTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTCAAAG-TTTAGGGTTTTA
* *
6736937 AAGTTTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAG
65 AAGTTTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAG
*
6737002 TTAGGATTAGG
130 TTAGAATTAGG
6737013 ATTAGAGTTT
Statistics
Matches: 120, Mismatches: 18, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
146 32 0.27
147 88 0.73
ACGTcount: A:0.24, C:0.00, G:0.30, T:0.46
Consensus pattern (147 bp):
GTTTAGGGTTTAGGTGTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAA
AGTTTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAGT
TAGAATTAGGGTTTAGT
Found at i:6736949 original size:7 final size:7
Alignment explanation
Indices: 6736873--6736950 Score: 50
Period size: 7 Copynumber: 10.7 Consensus size: 7
6736863 AGGGTTTAGT
*
6736873 GTTTAGG
1 GTTTAAG
*
6736880 GTTTAGG
1 GTTTAAG
*
6736887 GTTTTAG
1 GTTTAAG
6736894 GTTT-AG
1 GTTTAAG
6736900 TGTTTAAG
1 -GTTTAAG
*
6736908 GTTTTAAA
1 G-TTTAAG
*
6736916 GTTCAAG
1 GTTTAAG
*
6736923 GATTTAGG
1 G-TTTAAG
*
6736931 GTTTTAAA
1 G-TTTAAG
6736939 GTTTAAG
1 GTTTAAG
6736946 GTTTA
1 GTTTA
6736951 GGATTTGTAA
Statistics
Matches: 56, Mismatches: 11, Indels: 8
0.75 0.15 0.11
Matches are distributed among these distances:
6 2 0.04
7 36 0.64
8 18 0.32
ACGTcount: A:0.24, C:0.01, G:0.28, T:0.46
Consensus pattern (7 bp):
GTTTAAG
Found at i:6736962 original size:22 final size:22
Alignment explanation
Indices: 6736873--6736976 Score: 83
Period size: 21 Copynumber: 4.8 Consensus size: 22
6736863 AGGGTTTAGT
* * *
6736873 GTTTAGGGTTTAGGGTTTT-AG
1 GTTTAAGGTTTAGGATTTTAAA
6736894 GTTT-AGTGTTTAAGG-TTTTAAA
1 GTTTAAG-GTTT-AGGATTTTAAA
* *
6736916 GTTCAAGGATTTAGGGTTTTAAA
1 GTTTAAGG-TTTAGGATTTTAAA
6736939 GTTTAAGGTTTAGGATTTGT-AA
1 GTTTAAGGTTTAGGATTT-TAAA
*
6736961 G-TTAAGGGTTAGGATT
1 GTTTAAGGTTTAGGATT
6736977 AAGGTTAGGG
Statistics
Matches: 70, Mismatches: 6, Indels: 14
0.78 0.07 0.16
Matches are distributed among these distances:
20 1 0.01
21 26 0.37
22 23 0.33
23 20 0.29
ACGTcount: A:0.25, C:0.01, G:0.30, T:0.44
Consensus pattern (22 bp):
GTTTAAGGTTTAGGATTTTAAA
Found at i:6736967 original size:21 final size:22
Alignment explanation
Indices: 6736901--6736976 Score: 77
Period size: 22 Copynumber: 3.5 Consensus size: 22
6736891 TAGGTTTAGT
6736901 GTTTAAGG-TTTTAAAGTTCAAG
1 GTTT-AGGATTTTAAAGTTCAAG
* *
6736923 GATTTAGGGTTTTAAAGTTTAAG
1 G-TTTAGGATTTTAAAGTTCAAG
6736946 GTTTAGGATTTGT-AAGTT-AAG
1 GTTTAGGATTT-TAAAGTTCAAG
*
6736967 GGTTAGGATT
1 GTTTAGGATT
6736977 AAGGTTAGGG
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
21 12 0.25
22 18 0.38
23 18 0.38
ACGTcount: A:0.29, C:0.01, G:0.28, T:0.42
Consensus pattern (22 bp):
GTTTAGGATTTTAAAGTTCAAG
Found at i:6736995 original size:33 final size:34
Alignment explanation
Indices: 6736941--6737037 Score: 117
Period size: 33 Copynumber: 2.9 Consensus size: 34
6736931 GTTTTAAAGT
* * *
6736941 TTAAGGTTTAGGATTTGTAAGTTAAGGGTTAGGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAGGA
**
6736975 TTAAGG-TTAGGGTTTTTAAGTTAATAGTTAGGA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAGGA
* *
6737008 TT-AGGATTAGAGTTTTTAAGTTTAGGGTTA
1 TTAAGGATTAGGGTTTTTAAGTTAAGGGTTA
6737038 TGGTTTTTTG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
32 3 0.06
33 45 0.83
34 6 0.11
ACGTcount: A:0.29, C:0.00, G:0.29, T:0.42
Consensus pattern (34 bp):
TTAAGGATTAGGGTTTTTAAGTTAAGGGTTAGGA
Found at i:6737031 original size:147 final size:146
Alignment explanation
Indices: 6736726--6737058 Score: 366
Period size: 147 Copynumber: 2.3 Consensus size: 146
6736716 ATGATTTATA
* * * ** * * *
6736726 GTTTAGGGTTTAGGTTTTTTAGGTTTAAAGTTTGTGGTTTTTAAGTTTAAAGTTTAGGGTTTTAT
1 GTTTAGAGTTTAGG-GTTTTAGGTTTAATGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAA
* * * * * *
6736791 GGTTTATGGTTTAAGGTTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGATTTTTAAGTTAAGGGT
65 AGTTTAAGGTTTAAGGTTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAGT
* *
6736856 TAGAATTAGGGTTTAGT
130 TAGAATTAGGATTGAGT
* * *
6736873 GTTTAGGGTTTAGGGTTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTCAAGGATTTAGGGTTTTAA
1 GTTTAGAGTTTAGGGTTTTAGGTTTAATGTTTAAGGTTTTAAAGTTCAAAG-TTTAGGGTTTTAA
* *
6736938 AGTTTAAGGTTT-AGGATTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGGTTTTTAAGTTAATAG
65 AGTTTAAGGTTTAAGG-TTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAG
*
6737002 TTAGGATTAGGATTAGAGT
129 TTAGAATTAGGATT-GAGT
* * **
6737021 TTTTA-AGTTTAGGGTTAT-GGTTTTTTGGTTTAAGGTTT
1 GTTTAGAGTTTAGGGTTTTAGGTTTAAT-GTTTAAGGTTT
6737059 AGAGTTTTTT
Statistics
Matches: 157, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
146 38 0.24
147 112 0.71
148 7 0.04
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.47
Consensus pattern (146 bp):
GTTTAGAGTTTAGGGTTTTAGGTTTAATGTTTAAGGTTTTAAAGTTCAAAGTTTAGGGTTTTAAA
GTTTAAGGTTTAAGGTTTGTAAGTTAAGGGTTAGGATTAAGGTTAGGATTTTTAAGTTAAGAGTT
AGAATTAGGATTGAGT
Found at i:6737065 original size:22 final size:21
Alignment explanation
Indices: 6737008--6737069 Score: 63
Period size: 21 Copynumber: 2.9 Consensus size: 21
6736998 ATAGTTAGGA
* *
6737008 TTAGGATTAGAGTTTTTAAGT
1 TTAGGGTTAGAGTTTTTTAGT
*
6737029 TTAGGGTTATG-GTTTTTTGGT
1 TTAGGGTTA-GAGTTTTTTAGT
*
6737050 TTAAGGTTTAGAGTTTTTTA
1 TT-AGGGTTAGAGTTTTTTA
6737070 ATTATAAAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
21 19 0.58
22 14 0.42
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (21 bp):
TTAGGGTTAGAGTTTTTTAGT
Found at i:6737169 original size:15 final size:15
Alignment explanation
Indices: 6737136--6737177 Score: 50
Period size: 15 Copynumber: 2.9 Consensus size: 15
6737126 AAAATCCAAA
*
6737136 GGTTTA-AGGTTTAG
1 GGTTTAGAGTTTTAG
*
6737150 AGTTTAGAGTTTTAG
1 GGTTTAGAGTTTTAG
*
6737165 GGTTTAGTGTTTT
1 GGTTTAGAGTTTT
6737178 TAAGTTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
14 5 0.22
15 18 0.78
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (15 bp):
GGTTTAGAGTTTTAG
Found at i:6737213 original size:33 final size:32
Alignment explanation
Indices: 6737168--6737290 Score: 183
Period size: 33 Copynumber: 3.7 Consensus size: 32
6737158 GTTTTAGGGT
** *
6737168 TTAGTGTTTTTAAGTTAAATGTTAGGATTAGGG
1 TTAG-GTTTTTAAGTTAAGGGTTAGGATTAGGA
6737201 TTAGAGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTAG-GTTTTTAAGTTAAGGGTTAGGATTAGGA
6737234 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGA
1 TTA-GGTTTTTAAGTTAAGGGTTAGGATTAGGA
6737267 TTAGGATTTTTAAGTTAAGGGTTA
1 TTAGG-TTTTTAAGTTAAGGGTTA
6737291 TGGTTTTTAG
Statistics
Matches: 84, Mismatches: 4, Indels: 4
0.91 0.04 0.04
Matches are distributed among these distances:
32 2 0.02
33 81 0.96
34 1 0.01
ACGTcount: A:0.28, C:0.00, G:0.29, T:0.42
Consensus pattern (32 bp):
TTAGGTTTTTAAGTTAAGGGTTAGGATTAGGA
Found at i:6737249 original size:66 final size:68
Alignment explanation
Indices: 6737168--6737315 Score: 203
Period size: 66 Copynumber: 2.2 Consensus size: 68
6737158 GTTTTAGGGT
* * *
6737168 TTAGTGTTTTTAAGTTAAATGTTAGGATTAGGGTTA-GAGTTTTTAAGTTAAGGGTTA-GG-ATT
1 TTAGGGTTTTTAAGTTAAAGGTTAGGATTAGGATTAGGA-TTTTTAAGTTAAGGGTTATGGTATT
6737230 AGGA
65 AGGA
* *
6737234 TTAGGGTTTTTAAGTTAAGGGTTAGGATTAGGATTAGGATTTTTAAGTTAAGGGTTATGGTTTTT
1 TTAGGGTTTTTAAGTTAAAGGTTAGGATTAGGATTAGGATTTTTAAGTTAAGGGTTATGG-TATT
*
6737299 AGGT
65 AGGA
6737303 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
6737316 TTTTATGGTT
Statistics
Matches: 72, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
66 50 0.69
67 4 0.06
69 18 0.25
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (68 bp):
TTAGGGTTTTTAAGTTAAAGGTTAGGATTAGGATTAGGATTTTTAAGTTAAGGGTTATGGTATTA
GGA
Found at i:6737319 original size:22 final size:22
Alignment explanation
Indices: 6737294--6737399 Score: 78
Period size: 22 Copynumber: 4.8 Consensus size: 22
6737284 AGGGTTATGG
6737294 TTTTTAGGTTTAGGGTTTTTAA
1 TTTTTAGGTTTAGGGTTTTTAA
*
6737316 -TTTTATGGTTTAGAGTTTTTAA
1 TTTTTA-GGTTTAGGGTTTTTAA
* *
6737338 TGTTTAGTGTTTAAGG--TTTAA
1 TTTTTAG-GTTTAGGGTTTTTAA
* *
6737359 GGTTTTTAGGTTTAAGG--TTTAG
1 --TTTTTAGGTTTAGGGTTTTTAA
*
6737381 TATTTAGGGTTTAGGGTTT
1 TTTTTA-GGTTTAGGGTTT
6737400 AGGGTTTATG
Statistics
Matches: 68, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
20 5 0.07
21 18 0.26
22 28 0.41
23 17 0.25
ACGTcount: A:0.20, C:0.00, G:0.25, T:0.55
Consensus pattern (22 bp):
TTTTTAGGTTTAGGGTTTTTAA
Found at i:6737343 original size:7 final size:7
Alignment explanation
Indices: 6737333--6737436 Score: 63
Period size: 7 Copynumber: 14.7 Consensus size: 7
6737323 GTTTAGAGTT
*
6737333 TTTAATG
1 TTTAAGG
6737340 TTT-AGTG
1 TTTAAG-G
6737347 TTTAAGG
1 TTTAAGG
6737354 TTTAAGG
1 TTTAAGG
*
6737361 TTTTTAGG
1 -TTTAAGG
6737369 TTTAAGG
1 TTTAAGG
*
6737376 TTT-AGTA
1 TTTAAG-G
*
6737383 TTTAGGG
1 TTTAAGG
*
6737390 TTTAGGG
1 TTTAAGG
*
6737397 TTTAGGG
1 TTTAAGG
*
6737404 TTTATGG
1 TTTAAGG
6737411 TTTTTAA-G
1 --TTTAAGG
*
6737419 -TTAGGG
1 TTTAAGG
6737425 TTTAAGG
1 TTTAAGG
6737432 TTTAA
1 TTTAA
6737437 ATGTTATGTT
Statistics
Matches: 78, Mismatches: 10, Indels: 18
0.74 0.09 0.17
Matches are distributed among these distances:
5 3 0.04
6 4 0.05
7 57 0.73
8 10 0.13
9 4 0.05
ACGTcount: A:0.22, C:0.00, G:0.28, T:0.50
Consensus pattern (7 bp):
TTTAAGG
Found at i:6737356 original size:14 final size:14
Alignment explanation
Indices: 6737346--6737541 Score: 84
Period size: 14 Copynumber: 13.8 Consensus size: 14
6737336 AATGTTTAGT
*
6737346 GTTTAAGGTTTAAG
1 GTTTAGGGTTTAAG
6737360 GTTTTTA-GGTTTAAG
1 G--TTTAGGGTTTAAG
** *
6737375 GTTTAGTATTTAGG
1 GTTTAGGGTTTAAG
*
6737389 GTTTAGGGTTTAGG
1 GTTTAGGGTTTAAG
*
6737403 GTTTATGGTTTTTAA-
1 GTTTA-GG-GTTTAAG
6737418 G-TTAGGGTTTAAG
1 GTTTAGGGTTTAAG
** *
6737431 GTTTA-AATGTTATG
1 GTTTAGGGT-TTAAG
*
6737445 TTTTTA-GGTTT-AG
1 -GTTTAGGGTTTAAG
*
6737458 AGTTTAGGGTTTTAAA
1 -GTTTAGGG-TTTAAG
*
6737474 GTTTAAAGGTTT-AG
1 GTTT-AGGGTTTAAG
*
6737488 ATTTAGGGTTTATA-
1 GTTTAGGGTTTA-AG
* *
6737502 ATTTAGGGTTTTAGG
1 GTTTAGGG-TTTAAG
* *
6737517 GTTTAGAGTTTAAA
1 GTTTAGGGTTTAAG
6737531 GTTTAGGGTTT
1 GTTTAGGGTTT
6737542 TTTTAGTTTA
Statistics
Matches: 137, Mismatches: 28, Indels: 34
0.69 0.14 0.17
Matches are distributed among these distances:
12 5 0.04
13 19 0.14
14 63 0.46
15 38 0.28
16 12 0.09
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.48
Consensus pattern (14 bp):
GTTTAGGGTTTAAG
Found at i:6737363 original size:21 final size:21
Alignment explanation
Indices: 6737333--6737487 Score: 71
Period size: 21 Copynumber: 7.6 Consensus size: 21
6737323 GTTTAGAGTT
*
6737333 TTTAATGTTTAGTGTTTAAGG
1 TTTAAGGTTTAGTGTTTAAGG
6737354 TTTAAGG--T--T-TTT-AGG
1 TTTAAGGTTTAGTGTTTAAGG
* *
6737369 TTTAAGGTTTAGTATTTAGGG
1 TTTAAGGTTTAGTGTTTAAGG
* * *
6737390 TTTAGGGTTTAGGGTTTATGG
1 TTTAAGGTTTAGTGTTTAAGG
*
6737411 TTTTTAA-G-TTAGGGTTTAAGG
1 --TTTAAGGTTTAGTGTTTAAGG
* *
6737432 TTTAA-ATGTTA-TGTTTTTAGG
1 TTTAAGGT-TTAGTG-TTTAAGG
* *
6737453 TTT-AGAGTTTAGGGTTTTAAAG
1 TTTAAG-GTTTAGTG-TTTAAGG
6737475 TTTAAAGGTTTAG
1 TTT-AAGGTTTAG
6737488 ATTTAGGGTT
Statistics
Matches: 103, Mismatches: 15, Indels: 30
0.70 0.10 0.20
Matches are distributed among these distances:
15 10 0.10
16 3 0.03
17 2 0.02
19 7 0.07
20 5 0.05
21 52 0.50
22 12 0.12
23 10 0.10
24 2 0.02
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTAGTGTTTAAGG
Found at i:6737464 original size:7 final size:7
Alignment explanation
Indices: 6737447--6737541 Score: 59
Period size: 7 Copynumber: 13.4 Consensus size: 7
6737437 ATGTTATGTT
6737447 TTTAG-G
1 TTTAGAG
6737453 TTTAGAG
1 TTTAGAG
*
6737460 TTTAGGG
1 TTTAGAG
*
6737467 TTTTAAAG
1 -TTTAGAG
*
6737475 TTTAAAGG
1 TTTAGA-G
6737483 TTTAGA-
1 TTTAGAG
*
6737489 TTTAGGG
1 TTTAGAG
* *
6737496 TTTATAA
1 TTTAGAG
*
6737503 TTTAGGG
1 TTTAGAG
*
6737510 TTTTAGGG
1 -TTTAGAG
6737518 TTTAGAG
1 TTTAGAG
*
6737525 TTTAAAG
1 TTTAGAG
*
6737532 TTTAGGG
1 TTTAGAG
6737539 TTT
1 TTT
6737542 TTTTAGTTTA
Statistics
Matches: 69, Mismatches: 15, Indels: 9
0.74 0.16 0.10
Matches are distributed among these distances:
6 10 0.14
7 41 0.59
8 18 0.26
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (7 bp):
TTTAGAG
Found at i:6737498 original size:43 final size:43
Alignment explanation
Indices: 6737447--6737541 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
6737437 ATGTTATGTT
* *
6737447 TTTA-GGTTTAGAGTTTAGGGTTTTAAAGTTTAAAGGTTTAGA-
1 TTTAGGGTTTAGAATTTAGGGTTTTAAAGTTTAAA-GTTTAAAG
* ** *
6737489 TTTAGGGTTTATAATTTAGGGTTTTAGGGTTTAGAGTTTAAAG
1 TTTAGGGTTTAGAATTTAGGGTTTTAAAGTTTAAAGTTTAAAG
6737532 TTTAGGGTTT
1 TTTAGGGTTT
6737542 TTTTAGTTTA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 10 0.22
43 35 0.78
ACGTcount: A:0.25, C:0.00, G:0.27, T:0.47
Consensus pattern (43 bp):
TTTAGGGTTTAGAATTTAGGGTTTTAAAGTTTAAAGTTTAAAG
Found at i:6737590 original size:31 final size:32
Alignment explanation
Indices: 6737549--6737634 Score: 93
Period size: 31 Copynumber: 2.7 Consensus size: 32
6737539 TTTTTTTAGT
* *
6737549 TTAGGGTTAGGGTTAGAGTTTTTAGTGAA-GG
1 TTAGGATTAGGGTTAGAGTTTTAAGTGAAGGG
* *
6737580 TTAGGATTAGGGTTAGTGTTTTAAGTTAAGGG
1 TTAGGATTAGGGTTAGAGTTTTAAGTGAAGGG
* *
6737612 TTATGGTTTTAGGTTTAGAGTTT
1 TTA-GG-ATTAGGGTTAGAGTTT
6737635 AGGGTTTTAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
31 25 0.56
32 5 0.11
33 2 0.04
34 13 0.29
ACGTcount: A:0.22, C:0.00, G:0.34, T:0.44
Consensus pattern (32 bp):
TTAGGATTAGGGTTAGAGTTTTAAGTGAAGGG
Found at i:6737656 original size:22 final size:22
Alignment explanation
Indices: 6737592--6737692 Score: 88
Period size: 22 Copynumber: 4.8 Consensus size: 22
6737582 AGGATTAGGG
* *
6737592 TTAGTGTTTTAA-G-TTAAGGG
1 TTAGGGTTTTAATGTTTAAGGT
* *
6737612 TTATGGTTTT-AGGTTT-AGAGT
1 TTAGGGTTTTAATGTTTAAG-GT
6737633 TTAGGGTTTTAAAT-TTTAAGGT
1 TTAGGGTTTT-AATGTTTAAGGT
* *
6737655 TTAGGGTTTTCATGTTTAGGGT
1 TTAGGGTTTTAATGTTTAAGGT
6737677 TTAGGG-TTTAATGTTT
1 TTAGGGTTTTAATGTTT
6737693 TTTAAGTTAA
Statistics
Matches: 66, Mismatches: 8, Indels: 13
0.76 0.09 0.15
Matches are distributed among these distances:
19 1 0.02
20 11 0.17
21 23 0.35
22 28 0.42
23 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.28, T:0.50
Consensus pattern (22 bp):
TTAGGGTTTTAATGTTTAAGGT
Found at i:6737707 original size:23 final size:22
Alignment explanation
Indices: 6737679--6737774 Score: 81
Period size: 23 Copynumber: 4.4 Consensus size: 22
6737669 TTTAGGGTTT
6737679 AGGGTTTAATGTTTTTTAAGTTA
1 AGGGTTT-ATGTTTTTTAAGTTA
* * * *
6737702 AGGG-TTATGATTTAT-GGTTT
1 AGGGTTTATGTTTTTTAAGTTA
* *
6737722 AGGGTTTAGGTTTTTTAAGTTT
1 AGGGTTTATGTTTTTTAAGTTA
*
6737744 AGAGTTTATGATTTTTTAAGTTTA
1 AGGGTTTATG-TTTTTTAAG-TTA
6737768 A-GGTTTA
1 AGGGTTTA
6737775 GGGTTTAGGG
Statistics
Matches: 57, Mismatches: 12, Indels: 8
0.74 0.16 0.10
Matches are distributed among these distances:
20 7 0.12
21 15 0.26
22 14 0.25
23 18 0.32
24 3 0.05
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (22 bp):
AGGGTTTATGTTTTTTAAGTTA
Found at i:6737722 original size:43 final size:43
Alignment explanation
Indices: 6737669--6737757 Score: 126
Period size: 43 Copynumber: 2.1 Consensus size: 43
6737659 GGTTTTCATG
*
6737669 TTTAGGGTTTAGGGTTTAATGTTTTTTAAGTTAAG-GGTTATGA
1 TTTAGGGTTTAGGGTTT-AGGTTTTTTAAGTTAAGAGGTTATGA
* * *
6737712 TTTATGGTTTAGGGTTTAGGTTTTTTAAGTTTAGAGTTTATGA
1 TTTAGGGTTTAGGGTTTAGGTTTTTTAAGTTAAGAGGTTATGA
6737755 TTT
1 TTT
6737758 TTTAAGTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
42 15 0.37
43 26 0.63
ACGTcount: A:0.21, C:0.00, G:0.26, T:0.53
Consensus pattern (43 bp):
TTTAGGGTTTAGGGTTTAGGTTTTTTAAGTTAAGAGGTTATGA
Found at i:6737723 original size:94 final size:95
Alignment explanation
Indices: 6737598--6737781 Score: 239
Period size: 94 Copynumber: 1.9 Consensus size: 95
6737588 AGGGTTAGTG
* * *
6737598 TTTTAAGTTAAGGGTTATGGTTTTAGGTTTAGAGTTTAGGGTTTTAAATTTTA-AGGTTTA-GGG
1 TTTTAAGTTAAGGGTTATGATTTTAGGTTTAGAGTTTAGGGTTTTAAAGTTTAGA-GTTTATGAG
* *
6737661 TTTTCATGTTTAGGGTTTAGGGTTTAATGTT
65 TTTTCAAGTTTAAGGTTTAGGGTTTAATGTT
* * * *
6737692 TTTTAAGTTAAGGGTTATGA-TTTATGGTTTAGGGTTTAGGTTTTTTAAGTTTAGAGTTTATGAT
1 TTTTAAGTTAAGGGTTATGATTTTA-GGTTTAGAGTTTAGGGTTTTAAAGTTTAGAGTTTATGAG
*
6737756 TTTTTAAGTTTAAGGTTTAGGGTTTA
65 TTTTCAAGTTTAAGGTTTAGGGTTTA
6737782 GGGTTTAGTG
Statistics
Matches: 77, Mismatches: 10, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
93 4 0.05
94 48 0.62
95 25 0.32
ACGTcount: A:0.22, C:0.01, G:0.26, T:0.51
Consensus pattern (95 bp):
TTTTAAGTTAAGGGTTATGATTTTAGGTTTAGAGTTTAGGGTTTTAAAGTTTAGAGTTTATGAGT
TTTCAAGTTTAAGGTTTAGGGTTTAATGTT
Found at i:6737786 original size:14 final size:14
Alignment explanation
Indices: 6737763--6737801 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
6737753 GATTTTTTAA
6737763 GTTTAAGGTTTAGG
1 GTTTAAGGTTTAGG
* *
6737777 GTTTAGGGTTTAGT
1 GTTTAAGGTTTAGG
6737791 GTTTAAGGTTT
1 GTTTAAGGTTT
6737802 TTAAGTTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.18, C:0.00, G:0.33, T:0.49
Consensus pattern (14 bp):
GTTTAAGGTTTAGG
Found at i:6737795 original size:66 final size:65
Alignment explanation
Indices: 6737675--6737808 Score: 173
Period size: 66 Copynumber: 2.0 Consensus size: 65
6737665 CATGTTTAGG
* * *
6737675 GTTTAGGGTTTAATGTTTTTTAAGTTAAGGGTTATGATTTATGGTTTAGGGTTT-AGGTTTTTTA
1 GTTTAGAGTTTAATGTTTTTTAAGTTAAGGGTTAGGATTTAGGGTTTAGGGTTTAAGG-TTTTTA
6737739 A
65 A
* * *
6737740 GTTTAGAGTTT-ATGATTTTTTAAGTTTAAGGTTTAGGGTTTAGGGTTTAGTGTTTAAGGTTTTT
1 GTTTAGAGTTTAATG-TTTTTTAAG-TTAAGGGTTAGGATTTAGGGTTTAGGGTTTAAGGTTTTT
6737804 AA
64 AA
6737806 GTT
1 GTT
6737809 AAGGGTTAAG
Statistics
Matches: 60, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
64 3 0.05
65 19 0.32
66 35 0.58
67 3 0.05
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (65 bp):
GTTTAGAGTTTAATGTTTTTTAAGTTAAGGGTTAGGATTTAGGGTTTAGGGTTTAAGGTTTTTAA
Found at i:6737873 original size:14 final size:14
Alignment explanation
Indices: 6737854--6738125 Score: 86
Period size: 14 Copynumber: 19.6 Consensus size: 14
6737844 GGGTTAGAAC
6737854 TAGGGTTTAAGGTT
1 TAGGGTTTAAGGTT
* *
6737868 TAGGGTTTATGTTTT
1 TAGGGTTTAAG-GTT
*
6737883 TA-GGTTTAGGGTT
1 TAGGGTTTAAGGTT
6737896 TAGGGTTTTAAGGTTT
1 TAGGG-TTTAAGG-TT
* *
6737912 TAGGGTTTAGGGCT
1 TAGGGTTTAAGGTT
* *
6737926 TATGATTT----TT
1 TAGGGTTTAAGGTT
* *
6737936 TA-AGCTTAAGGTT
1 TAGGGTTTAAGGTT
*
6737949 TAGGGTTTATGGTT
1 TAGGGTTTAAGGTT
*** * *
6737963 TAATATTTATGATTT
1 TAGGGTTTAAG-GTT
6737978 TAGGGTTT-AGAGTT
1 TAGGGTTTAAG-GTT
*
6737992 TAGAGG-TTAAAGTT
1 TAG-GGTTTAAGGTT
*
6738006 TAGTGTTTTTAA-GTT
1 TAG-G-GTTTAAGGTT
* * *
6738021 AAAGG-TT-AGGAT
1 TAGGGTTTAAGGTT
**
6738033 TAGGG-TTAGTATTTT
1 TAGGGTTTA--AGGTT
*
6738048 TA-GGTTTAGGGTT
1 TAGGGTTTAAGGTT
* *
6738061 TAGTGTTTTTAGGTT
1 TAG-GGTTTAAGGTT
*
6738076 TAAGGTTTAAGGTT
1 TAGGGTTTAAGGTT
*
6738090 TAAGGTTT-AGTGTT
1 TAGGGTTTAAG-GTT
*
6738104 TAGGGTTTAAAGTT
1 TAGGGTTTAAGGTT
6738118 TAGGGTTT
1 TAGGGTTT
6738126 TTAAGTTATG
Statistics
Matches: 187, Mismatches: 48, Indels: 46
0.67 0.17 0.16
Matches are distributed among these distances:
9 2 0.01
10 3 0.02
11 1 0.01
12 9 0.05
13 14 0.07
14 99 0.53
15 48 0.26
16 11 0.06
ACGTcount: A:0.22, C:0.01, G:0.29, T:0.48
Consensus pattern (14 bp):
TAGGGTTTAAGGTT
Found at i:6737920 original size:7 final size:7
Alignment explanation
Indices: 6737854--6737923 Score: 70
Period size: 7 Copynumber: 9.7 Consensus size: 7
6737844 GGGTTAGAAC
6737854 TAGGGTT
1 TAGGGTT
*
6737861 TAAGGTT
1 TAGGGTT
6737868 TAGGGTT
1 TAGGGTT
**
6737875 TATGTTTT
1 TA-GGGTT
6737883 TA-GGTT
1 TAGGGTT
6737889 TAGGGTT
1 TAGGGTT
6737896 TAGGGTTT
1 TAGGG-TT
*
6737904 TAAGGTTT
1 T-AGGGTT
6737912 TAGGGTT
1 TAGGGTT
6737919 TAGGG
1 TAGGG
6737924 CTTATGATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
6 4 0.08
7 33 0.65
8 11 0.22
9 3 0.06
ACGTcount: A:0.17, C:0.00, G:0.36, T:0.47
Consensus pattern (7 bp):
TAGGGTT
Found at i:6738062 original size:7 final size:7
Alignment explanation
Indices: 6738046--6738125 Score: 65
Period size: 7 Copynumber: 11.4 Consensus size: 7
6738036 GGTTAGTATT
6738046 TTTA-GG
1 TTTAGGG
6738052 TTTAGGG
1 TTTAGGG
*
6738059 TTTAGTGTT
1 TTTAG-G-G
6738068 TTTA-GG
1 TTTAGGG
*
6738074 TTTAAGG
1 TTTAGGG
*
6738081 TTTAAGG
1 TTTAGGG
*
6738088 TTTAAGG
1 TTTAGGG
*
6738095 TTTAGTG
1 TTTAGGG
6738102 TTTAGGG
1 TTTAGGG
**
6738109 TTTAAAG
1 TTTAGGG
6738116 TTTAGGG
1 TTTAGGG
6738123 TTT
1 TTT
6738126 TTAAGTTATG
Statistics
Matches: 61, Mismatches: 9, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
6 8 0.13
7 48 0.79
8 1 0.02
9 4 0.07
ACGTcount: A:0.20, C:0.00, G:0.30, T:0.50
Consensus pattern (7 bp):
TTTAGGG
Found at i:6738176 original size:22 final size:22
Alignment explanation
Indices: 6738157--6738233 Score: 86
Period size: 22 Copynumber: 3.5 Consensus size: 22
6738147 ATAATTTAGG
6738157 GTTTA-GGTTTTTTAGGTTTAAA
1 GTTTATGG-TTTTTAGGTTTAAA
*
6738179 GTTTATGGTTTTTAAGTTTAAA
1 GTTTATGGTTTTTAGGTTTAAA
* **
6738201 GTTTA-GGGTTTTATGGTTTATG
1 GTTTATGGTTTTTA-GGTTTAAA
6738223 GTTTATGGTTT
1 GTTTATGGTTT
6738234 ATGGTTTTTA
Statistics
Matches: 46, Mismatches: 6, Indels: 5
0.81 0.11 0.09
Matches are distributed among these distances:
21 7 0.15
22 33 0.72
23 6 0.13
ACGTcount: A:0.19, C:0.00, G:0.25, T:0.56
Consensus pattern (22 bp):
GTTTATGGTTTTTAGGTTTAAA
Found at i:6738211 original size:7 final size:7
Alignment explanation
Indices: 6738210--6738240 Score: 62
Period size: 7 Copynumber: 4.4 Consensus size: 7
6738200 AGTTTAGGGT
6738210 TTTATGG
1 TTTATGG
6738217 TTTATGG
1 TTTATGG
6738224 TTTATGG
1 TTTATGG
6738231 TTTATGG
1 TTTATGG
6738238 TTT
1 TTT
6738241 TTAAGTTAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.13, C:0.00, G:0.26, T:0.61
Consensus pattern (7 bp):
TTTATGG
Found at i:6738275 original size:33 final size:33
Alignment explanation
Indices: 6738238--6738300 Score: 108
Period size: 33 Copynumber: 1.9 Consensus size: 33
6738228 TGGTTTATGG
* *
6738238 TTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGA
1 TTTTTAAGTTAAAGGTTAGAATTAGGGTTTGGA
6738271 TTTTTAAGTTAAAGGTTAGAATTAGGGTTT
1 TTTTTAAGTTAAAGGTTAGAATTAGGGTTT
6738301 AGGGTTTAGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 28 1.00
ACGTcount: A:0.27, C:0.00, G:0.29, T:0.44
Consensus pattern (33 bp):
TTTTTAAGTTAAAGGTTAGAATTAGGGTTTGGA
Found at i:6738307 original size:74 final size:73
Alignment explanation
Indices: 6738222--6738451 Score: 190
Period size: 74 Copynumber: 3.0 Consensus size: 73
6738212 TATGGTTTAT
* *
6738222 GGTTTATGGTTTATGGTTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGATTTTTAAGTTAAAGGT
1 GGTTTAAGGTTTA-GGTTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGATTTTTAAGTTAAAGGT
*
6738287 TAGAATTAG
65 TAGGATTAG
* * * * * * ** ** *
6738296 GGTTTAGGGTTTAGGGTTTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTTAAAGATTTAGGGTTTT
1 GGTTTAAGGTTTA-GGTTTTTAAGTTAAG-GGTT-AGG-ATTAAGGTTTGGATTTTTA-AG--TT
* *
6738361 AAAGTTTAAGGTTTAG
59 AAAGGTT-AGGATTAG
* * * *
6738377 AGTTTAAGGTTTAGAATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGGTTTTTAAGTTAATGGT
1 GGTTTAAGGTTTAG-GTTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGATTTTTAAGTTAAAGGT
6738442 TAGGATTAG
65 TAGGATTAG
6738451 G
1 G
6738452 ATTAGAGTTT
Statistics
Matches: 114, Mismatches: 34, Indels: 16
0.70 0.21 0.10
Matches are distributed among these distances:
74 32 0.28
75 10 0.09
76 3 0.03
77 13 0.11
78 13 0.11
79 3 0.03
80 12 0.11
81 28 0.25
ACGTcount: A:0.26, C:0.00, G:0.29, T:0.45
Consensus pattern (73 bp):
GGTTTAAGGTTTAGGTTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGATTTTTAAGTTAAAGGTT
AGGATTAG
Found at i:6738322 original size:22 final size:22
Alignment explanation
Indices: 6738296--6738390 Score: 93
Period size: 22 Copynumber: 4.3 Consensus size: 22
6738286 TTAGAATTAG
*
6738296 GGTTTAGGGTTTAGGGTTTTTA
1 GGTTTAGGGTTTAGGGTTTTAA
* *
6738318 GGTTTAGTGTTTAAGGTTTTAA
1 GGTTTAGGGTTTAGGGTTTTAA
* * *
6738340 AGTTTAAAGATTTAGGGTTTTAA
1 GGTTT-AGGGTTTAGGGTTTTAA
* * *
6738363 AGTTTAAGGTTTAGAG-TTTAA
1 GGTTTAGGGTTTAGGGTTTTAA
6738384 GGTTTAG
1 GGTTTAG
6738391 AATTTTTAAG
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
21 10 0.17
22 32 0.53
23 18 0.30
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.46
Consensus pattern (22 bp):
GGTTTAGGGTTTAGGGTTTTAA
Found at i:6738391 original size:14 final size:14
Alignment explanation
Indices: 6738335--6738389 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
6738325 TGTTTAAGGT
*
6738335 TTTAAAGTTTAAAG
1 TTTAAGGTTTAAAG
*
6738349 ATTTAGGGTTTTAAAG
1 -TTTAAGG-TTTAAAG
*
6738365 TTTAAGGTTTAGAG
1 TTTAAGGTTTAAAG
6738379 TTTAAGGTTTA
1 TTTAAGGTTTA
6738390 GAATTTTTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 17 0.49
15 11 0.31
16 7 0.20
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.45
Consensus pattern (14 bp):
TTTAAGGTTTAAAG
Found at i:6738430 original size:155 final size:147
Alignment explanation
Indices: 6738151--6738451 Score: 399
Period size: 155 Copynumber: 2.0 Consensus size: 147
6738141 TGATTTATAA
* * *
6738151 TTTAGGGTTTAGGTTTTTTAGGTTTAAAGTTTATGGTTTTTAAGTTTAAAGTTTAGGGTTTTATG
1 TTTAGGGTTTAGGGTTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTTAAAGTTTAGGGTTTTATG
* * *
6738216 GTTTATGGTTTATGGTTTATGGTTTTTAAGTTAAGGGTTAGGATTAGGGTTTGGATTTTTAAGTT
66 GTTTATGGTTTAAGGTTTATGATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGATTTTTAAGTT
6738281 AAAGGTTAGAATTAGGG
131 AAAGGTTAGAATTAGGG
**
6738298 TTTAGGGTTTAGGGTTTTTAGGTTTAGTGTTTAAGGTTTTAAAGTTTAAAGATTTAGGGTTTTAA
1 TTTAGGGTTTAGGGTTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTTAAAG-TTTAGGGTTTT--
*
6738363 AGTTTAAGGTTTA-GAGTTTAAGGTTTA-GAATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGG
63 A---T--GGTTTATG-GTTTAAGGTTTATG-ATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGA
* *
6738426 TTTTTAAGTTAATGGTTAGGATTAGG
121 TTTTTAAGTTAAAGGTTAGAATTAGG
6738452 ATTAGAGTTT
Statistics
Matches: 133, Mismatches: 11, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
147 46 0.35
148 11 0.08
150 1 0.01
153 1 0.01
154 2 0.02
155 72 0.54
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (147 bp):
TTTAGGGTTTAGGGTTTTTAGGTTTAAAGTTTAAGGTTTTAAAGTTTAAAGTTTAGGGTTTTATG
GTTTATGGTTTAAGGTTTATGATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGATTTTTAAGTT
AAAGGTTAGAATTAGGG
Found at i:6738434 original size:33 final size:33
Alignment explanation
Indices: 6738356--6738476 Score: 127
Period size: 33 Copynumber: 3.6 Consensus size: 33
6738346 AAGATTTAGG
* * *
6738356 GTTTTAAAGTTTAAGGTTTAGAGTTTAAGGTTTAGA
1 GTTTTTAAG-TTAAGGGTTAG-GATTAAGGTTT-GA
* *
6738392 ATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGG
1 GTTTTTAAGTTAAGGGTTAGGATTAAGGTTTGA
* *
6738425 GTTTTTAAGTTAATGGTTAGGATT-AGGATTAGA
1 GTTTTTAAGTTAAGGGTTAGGATTAAGG-TTTGA
*
6738458 GTTTTTAAGTTTAGGGTTA
1 GTTTTTAAGTTAAGGGTTA
6738477 TGGTTTTTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
32 3 0.04
33 43 0.59
34 10 0.14
35 10 0.14
36 7 0.10
ACGTcount: A:0.28, C:0.00, G:0.27, T:0.45
Consensus pattern (33 bp):
GTTTTTAAGTTAAGGGTTAGGATTAAGGTTTGA
Found at i:6738482 original size:21 final size:22
Alignment explanation
Indices: 6738453--6738508 Score: 60
Period size: 21 Copynumber: 2.6 Consensus size: 22
6738443 AGGATTAGGA
*
6738453 TTAGAGTTTTTAAGTTT-AGGG
1 TTAGGGTTTTTAAGTTTAAGGG
* ** *
6738474 TTATGGTTTTTTGGTTTAAGGT
1 TTAGGGTTTTTAAGTTTAAGGG
6738496 TTAGGGTTTTTAA
1 TTAGGGTTTTTAA
6738509 TTATAGAGTT
Statistics
Matches: 26, Mismatches: 8, Indels: 1
0.74 0.23 0.03
Matches are distributed among these distances:
21 13 0.50
22 13 0.50
ACGTcount: A:0.20, C:0.00, G:0.27, T:0.54
Consensus pattern (22 bp):
TTAGGGTTTTTAAGTTTAAGGG
Found at i:6738546 original size:225 final size:224
Alignment explanation
Indices: 6738312--6738721 Score: 594
Period size: 225 Copynumber: 1.8 Consensus size: 224
6738302 GGGTTTAGGG
* * *
6738312 TTTTTAGGTTT-AGTGTTTAAGGTTTTAAAGTT-TAAAGATTTAGGGTTTTAAAGTTTAAGGTTT
1 TTTTTAGGTTTAAG-GTTTAAGGTTTTAAAATTCAAAAG-TTTAGGG-TTTAAAGTTTAAAGTTT
* *
6738375 AGAG-TTTAAGGTTTAGAATTTTTAAGTTAAGGGTTAGGATTAAGGTTTGGGTTTTTAAG-TTAA
63 AGAGTTTTAAGGTTTAGAATTTTTAAGTTAAAGGTTAGGATTAAGGTTAGGGTTTTTAAGTTTAA
* * * *
6738438 TGGTTAGGATTAGGATTAGAGTTTTTAAGTTTAGGGTTATGGTTTTTTGGTTTAAGGTTTAGGGT
128 -GATTAGG-GTAGGATTAGAGTTTTTAAGTTAAGGGTTATGGTTTTTAGGTTTAAGGTTTAGGGT
6738503 TTTTAATTATAGAGTTTAGTGTTTAGTGTTTAAT
191 TTTTAATTATAGAGTTTAGTGTTTAGTGTTTAAT
** *
6738537 TTTTTAGGTTTAAGGTTTGGGGTTTTAAAATTCAAAAGTTTAGGGTTTAAGGTTTAAAGTTTAGA
1 TTTTTAGGTTTAAGGTTTAAGGTTTTAAAATTCAAAAGTTTAGGGTTTAAAGTTTAAAGTTTAGA
** *
6738602 GTTTTAAGGTTTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGGTTAGGGTTTTTAAGTTTAAGAT
66 GTTTTAAGGTTTAGAATTTTTAAGTTAAAGGTTAGGATTAAGGTTAGGGTTTTTAAGTTTAAGAT
* *
6738667 TAGGGTAGGATTAGGGTTTTTAAGTTAAGGGTTATGGTTTTTAGGTTTAGGGTTT
131 TAGGGTAGGATTAGAGTTTTTAAGTTAAGGGTTATGGTTTTTAGGTTTAAGGTTT
6738722 TAAATTTTAT
Statistics
Matches: 164, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
224 65 0.40
225 89 0.54
226 10 0.06
ACGTcount: A:0.26, C:0.00, G:0.27, T:0.47
Consensus pattern (224 bp):
TTTTTAGGTTTAAGGTTTAAGGTTTTAAAATTCAAAAGTTTAGGGTTTAAAGTTTAAAGTTTAGA
GTTTTAAGGTTTAGAATTTTTAAGTTAAAGGTTAGGATTAAGGTTAGGGTTTTTAAGTTTAAGAT
TAGGGTAGGATTAGAGTTTTTAAGTTAAGGGTTATGGTTTTTAGGTTTAAGGTTTAGGGTTTTTA
ATTATAGAGTTTAGTGTTTAGTGTTTAAT
Found at i:6738607 original size:22 final size:21
Alignment explanation
Indices: 6738571--6738614 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
6738561 TTAAAATTCA
6738571 AAAGTTTAGGGTTTAAGGTTT
1 AAAGTTTAGGGTTTAAGGTTT
*
6738592 AAAGTTTAGAGTTTTAAGGTTT
1 AAAGTTTAG-GGTTTAAGGTTT
6738614 A
1 A
6738615 GTGTTTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.32, C:0.00, G:0.25, T:0.43
Consensus pattern (21 bp):
AAAGTTTAGGGTTTAAGGTTT
Found at i:6738625 original size:16 final size:15
Alignment explanation
Indices: 6738575--6738621 Score: 51
Period size: 15 Copynumber: 3.2 Consensus size: 15
6738565 AATTCAAAAG
* *
6738575 TTTAGGGTTTA-AGG
1 TTTAAGGTTTAGAGT
*
6738589 TTTAAAGTTTAGAGT
1 TTTAAGGTTTAGAGT
*
6738604 TTTAAGGTTTAGTGT
1 TTTAAGGTTTAGAGT
6738619 TTT
1 TTT
6738622 TAAGTTAAAG
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
14 9 0.33
15 18 0.67
ACGTcount: A:0.23, C:0.00, G:0.26, T:0.51
Consensus pattern (15 bp):
TTTAAGGTTTAGAGT
Found at i:6738655 original size:33 final size:32
Alignment explanation
Indices: 6738612--6738700 Score: 115
Period size: 32 Copynumber: 2.8 Consensus size: 32
6738602 GTTTTAAGGT
* * *
6738612 TTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGG
1 TTAGGGTTTTTAAGTTAAAGGTTAGG-GTAGGA
* *
6738645 TTAGGGTTTTTAAGTTTAAGATTAGGGTAGGA
1 TTAGGGTTTTTAAGTTAAAGGTTAGGGTAGGA
*
6738677 TTAGGGTTTTTAAGTTAAGGGTTA
1 TTAGGGTTTTTAAGTTAAAGGTTA
6738701 TGGTTTTTAG
Statistics
Matches: 48, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
32 25 0.52
33 23 0.48
ACGTcount: A:0.27, C:0.00, G:0.30, T:0.43
Consensus pattern (32 bp):
TTAGGGTTTTTAAGTTAAAGGTTAGGGTAGGA
Found at i:6738686 original size:32 final size:33
Alignment explanation
Indices: 6738612--6738694 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
6738602 GTTTTAAGGT
* * * *
6738612 TTAGTGTTTTTAAGTTAAAGGTTAGGATTAGGG
1 TTAGGGTTTTTAAGTTAAAGATTAGGAGTAGGA
*
6738645 TTAGGGTTTTTAAGTTTAAGATTAGG-GTAGGA
1 TTAGGGTTTTTAAGTTAAAGATTAGGAGTAGGA
6738677 TTAGGGTTTTTAAGTTAA
1 TTAGGGTTTTTAAGTTAA
6738695 GGGTTATGGT
Statistics
Matches: 44, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 21 0.48
33 23 0.52
ACGTcount: A:0.28, C:0.00, G:0.29, T:0.43
Consensus pattern (33 bp):
TTAGGGTTTTTAAGTTAAAGATTAGGAGTAGGA
Found at i:6738705 original size:21 final size:21
Alignment explanation
Indices: 6738681--6738720 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
6738671 GTAGGATTAG
6738681 GGTTTTTAAGTTAAGGGTTAT
1 GGTTTTTAAGTTAAGGGTTAT
* *
6738702 GGTTTTTAGGTTTAGGGTT
1 GGTTTTTAAGTTAAGGGTT
6738721 TTAAATTTTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.33, T:0.50
Consensus pattern (21 bp):
GGTTTTTAAGTTAAGGGTTAT
Found at i:6738729 original size:22 final size:22
Alignment explanation
Indices: 6738704--6738784 Score: 85
Period size: 22 Copynumber: 3.6 Consensus size: 22
6738694 AGGGTTATGG
6738704 TTTTTAGGTTTAGGGTTTTAAA
1 TTTTTAGGTTTAGGGTTTTAAA
*
6738726 -TTTTATGGTTTAGGGTTTTTAA
1 TTTTTA-GGTTTAGGGTTTTAAA
* * *
6738748 TGTTTAGTGTTTAAGG-TTTAAGG
1 TTTTTAG-GTTTAGGGTTTTAA-A
6738771 TTTTTAGGTTTAGG
1 TTTTTAGGTTTAGG
6738785 TTTAGTATTT
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
21 5 0.10
22 26 0.54
23 17 0.35
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (22 bp):
TTTTTAGGTTTAGGGTTTTAAA
Found at i:6738753 original size:7 final size:7
Alignment explanation
Indices: 6738743--6738964 Score: 57
Period size: 7 Copynumber: 31.4 Consensus size: 7
6738733 GTTTAGGGTT
*
6738743 TTTAATG
1 TTTAAGG
6738750 TTT-AGTG
1 TTTAAG-G
6738757 TTTAAGG
1 TTTAAGG
6738764 TTTAAGG
1 TTTAAGG
*
6738771 TTTTTAGG
1 -TTTAAGG
6738779 TTT-AGG
1 TTTAAGG
*
6738785 TTT-AGTA
1 TTTAAG-G
*
6738792 TTTAGGG
1 TTTAAGG
*
6738799 TTTAAAG
1 TTTAAGG
*
6738806 TTTAGGG
1 TTTAAGG
*
6738813 TTTAGGG
1 TTTAAGG
*
6738820 TTTAGAGTT
1 TTTA-AG-G
6738829 TTTAA-G
1 TTTAAGG
*
6738835 -TTAGGG
1 TTTAAGG
**
6738841 TTTACTG
1 TTTAAGG
*
6738848 TTTAA-A
1 TTTAAGG
* *
6738854 TGTTATGT
1 T-TTAAGG
*
6738862 TTTTAGG
1 TTTAAGG
*
6738869 TTTAGGG
1 TTTAAGG
*
6738876 TTTAGGG
1 TTTAAGG
*
6738883 TTTTAAAG
1 -TTTAAGG
6738891 TTTAAGAG
1 TTTAAG-G
*
6738899 TTTAA-A
1 TTTAAGG
6738905 TTT-AGTG
1 TTTAAG-G
* *
6738912 TTTATGA
1 TTTAAGG
*
6738919 TTTAGGG
1 TTTAAGG
*
6738926 TTTTATGG
1 -TTTAAGG
6738934 TTT-AGAG
1 TTTAAG-G
*
6738941 TTTATGG
1 TTTAAGG
6738948 TTTAAGG
1 TTTAAGG
*
6738955 TTTAGGG
1 TTTAAGG
6738962 TTT
1 TTT
6738965 TTTAGTTAAG
Statistics
Matches: 158, Mismatches: 38, Indels: 38
0.68 0.16 0.16
Matches are distributed among these distances:
5 4 0.03
6 15 0.09
7 104 0.66
8 31 0.20
9 4 0.03
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (7 bp):
TTTAAGG
Found at i:6738808 original size:21 final size:21
Alignment explanation
Indices: 6738750--6738829 Score: 65
Period size: 21 Copynumber: 3.8 Consensus size: 21
6738740 GTTTTTAATG
* * *
6738750 TTTAGTGTTTAAGGTTTAAGGTT
1 TTTAGGGTTTAAAGTTT-A-GTA
*
6738773 TTTA-GGTTT-AGGTTTAGTA
1 TTTAGGGTTTAAAGTTTAGTA
**
6738792 TTTAGGGTTTAAAGTTTAGGG
1 TTTAGGGTTTAAAGTTTAGTA
*
6738813 TTTAGGGTTTAGAGTTT
1 TTTAGGGTTTAAAGTTT
6738830 TTAAGTTAGG
Statistics
Matches: 49, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
19 6 0.12
20 6 0.12
21 29 0.59
22 4 0.08
23 4 0.08
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (21 bp):
TTTAGGGTTTAAAGTTTAGTA
Found at i:6738932 original size:15 final size:15
Alignment explanation
Indices: 6738912--6738957 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
6738902 AAATTTAGTG
*
6738912 TTTATGATTTAGGGT
1 TTTATGGTTTAGGGT
*
6738927 TTTATGGTTTAGAG-
1 TTTATGGTTTAGGGT
*
6738941 TTTATGGTTTAAGGT
1 TTTATGGTTTAGGGT
6738956 TT
1 TT
6738958 AGGGTTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
14 12 0.46
15 14 0.54
ACGTcount: A:0.20, C:0.00, G:0.26, T:0.54
Consensus pattern (15 bp):
TTTATGGTTTAGGGT
Found at i:6738957 original size:14 final size:14
Alignment explanation
Indices: 6738691--6738964 Score: 57
Period size: 14 Copynumber: 19.1 Consensus size: 14
6738681 GGTTTTTAAG
*
6738691 TTAAGGGTTATGGTT
1 TTAAGGTTTATGG-T
* *
6738706 TTTAGGTTTAGGGTT
1 TTAAGGTTTATGG-T
**
6738721 TTAAATTTTATGGT
1 TTAAGGTTTATGGT
*
6738735 TTAGGGTTTTTAAT-GT
1 TTAAGG--TTT-ATGGT
*
6738751 TT-AGTGTTTAAGGT
1 TTAAG-GTTTATGGT
*
6738765 TTAAGGTTTTTAGGT
1 TTAAGGTTTAT-GGT
*
6738780 TT-AGGTTTA-GTAT
1 TTAAGGTTTATG-GT
* **
6738793 TTAGGGTTTAAAGT
1 TTAAGGTTTATGGT
* *
6738807 TTAGGGTTTAGGGT
1 TTAAGGTTTATGGT
* *
6738821 TT-AGAGTTTTTAAG-
1 TTAAG-GTTTAT-GGT
*
6738835 TTAGGGTTTACT-GT
1 TTAAGGTTTA-TGGT
* *
6738849 TTAA-ATGTTATGTT
1 TTAAGGT-TTATGGT
* *
6738863 TTTAGGTTTAGGGT
1 TTAAGGTTTATGGT
* **
6738877 TTAGGGTTTTAAAGT
1 TTAAGG-TTTATGGT
**
6738892 TTAAGAGTTTA-AAT
1 TTAAG-GTTTATGGT
*
6738906 TT-AGTGTTTATGAT
1 TTAAG-GTTTATGGT
*
6738920 TTAGGGTTTTATGGT
1 TTAAGG-TTTATGGT
6738935 TT-AGAGTTTATGGT
1 TTAAG-GTTTATGGT
*
6738949 TTAAGGTTTAGGGT
1 TTAAGGTTTATGGT
6738963 TT
1 TT
6738965 TTTAGTTAAG
Statistics
Matches: 188, Mismatches: 46, Indels: 51
0.66 0.16 0.18
Matches are distributed among these distances:
12 1 0.01
13 15 0.08
14 101 0.54
15 60 0.32
16 9 0.05
17 2 0.01
ACGTcount: A:0.22, C:0.00, G:0.27, T:0.51
Consensus pattern (14 bp):
TTAAGGTTTATGGT
Found at i:6738991 original size:27 final size:27
Alignment explanation
Indices: 6738956--6739017 Score: 106
Period size: 27 Copynumber: 2.3 Consensus size: 27
6738946 GGTTTAAGGT
* *
6738956 TTAGGGTTTTTTAGTTAAGGGTTAGGG
1 TTAGGGTTTTTTAGTGAAGGGTTAGGA
6738983 TTAGGGTTTTTTAGTGAAGGGTTAGGA
1 TTAGGGTTTTTTAGTGAAGGGTTAGGA
6739010 TTAGGGTT
1 TTAGGGTT
6739018 AGTGTTTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.19, C:0.00, G:0.37, T:0.44
Consensus pattern (27 bp):
TTAGGGTTTTTTAGTGAAGGGTTAGGA
Found at i:6739014 original size:33 final size:33
Alignment explanation
Indices: 6738977--6739039 Score: 99
Period size: 33 Copynumber: 1.9 Consensus size: 33
6738967 TAGTTAAGGG
*
6738977 TTAGGGTTAGGGTTTTTTAGTGAAGGGTTAGGA
1 TTAGGGTTAGGGTTTTTAAGTGAAGGGTTAGGA
* *
6739010 TTAGGGTTAGTGTTTTTAAGTTAAGGGTTA
1 TTAGGGTTAGGGTTTTTAAGTGAAGGGTTA
6739040 TGGTTTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.35, T:0.43
Consensus pattern (33 bp):
TTAGGGTTAGGGTTTTTAAGTGAAGGGTTAGGA
Found at i:6739044 original size:27 final size:27
Alignment explanation
Indices: 6738956--6739044 Score: 90
Period size: 27 Copynumber: 3.1 Consensus size: 27
6738946 GGTTTAAGGT
*
6738956 TTAGGGTTTTTTAGTTAAGGGTTAGGG
1 TTAGGGTTTTTTAGTTAAGGGTTATGG
*
6738983 TTAGGGTTTTTTAGTGAAGGGTTA-GG
1 TTAGGGTTTTTTAGTTAAGGGTTATGG
6739009 ATTAGGGTTAGTGTTTTTAAGTTAAGGGTTATGG
1 -TTA-GG---GT-TTTTT-AGTTAAGGGTTATGG
6739043 TT
1 TT
6739045 TTTAGGTTTA
Statistics
Matches: 52, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
26 2 0.04
27 26 0.50
28 2 0.04
31 2 0.04
32 5 0.10
33 13 0.25
34 2 0.04
ACGTcount: A:0.20, C:0.00, G:0.35, T:0.45
Consensus pattern (27 bp):
TTAGGGTTTTTTAGTTAAGGGTTATGG
Done.