Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 22 of 163
Found at i:6872013 original size:7 final size:7
Alignment explanation
Indices: 6871992--6872138 Score: 53
Period size: 7 Copynumber: 20.6 Consensus size: 7
6871982 TTAATTATCA
*
6871992 TTATTGT
1 TTATGGT
*
6871999 TTAGGGT
1 TTATGGT
6872006 TTATGGT
1 TTATGGT
* *
6872013 TAAGGGT
1 TTATGGT
*
6872020 ATATGGT
1 TTATGGT
*
6872027 TTAGGGT
1 TTATGGT
**
6872034 TTAAAGT
1 TTATGGT
*
6872041 TT-TGGAG
1 TTATGG-T
**
6872048 TTACTATT
1 TTA-TGGT
*
6872056 TTAAGGT
1 TTATGGT
* *
6872063 TTATAGA
1 TTATGGT
6872070 TTATGGGT
1 TTAT-GGT
* *
6872078 TTAAGGA
1 TTATGGT
*
6872085 TTATGAT
1 TTATGGT
*
6872092 TTACGGT
1 TTATGGT
6872099 TTATGCGT
1 TTATG-GT
*
6872107 TTAAGGT
1 TTATGGT
* *
6872114 TTAAGGG
1 TTATGGT
*
6872121 TTACGGT
1 TTATGGT
6872128 TTATGGT
1 TTATGGT
6872135 TTAT
1 TTAT
6872139 AGATTAATGG
Statistics
Matches: 96, Mismatches: 39, Indels: 10
0.66 0.27 0.07
Matches are distributed among these distances:
6 1 0.01
7 81 0.84
8 13 0.14
9 1 0.01
ACGTcount: A:0.23, C:0.03, G:0.27, T:0.47
Consensus pattern (7 bp):
TTATGGT
Found at i:6872042 original size:14 final size:14
Alignment explanation
Indices: 6871992--6872036 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
6871982 TTAATTATCA
*
6871992 TTATTGTTTAGGGT
1 TTATGGTTTAGGGT
*
6872006 TTATGGTTAAGGGT
1 TTATGGTTTAGGGT
*
6872020 ATATGGTTTAGGGT
1 TTATGGTTTAGGGT
6872034 TTA
1 TTA
6872037 AAGTTTTGGA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (14 bp):
TTATGGTTTAGGGT
Found at i:6872100 original size:36 final size:35
Alignment explanation
Indices: 6872055--6872150 Score: 93
Period size: 36 Copynumber: 2.7 Consensus size: 35
6872045 GAGTTACTAT
* *
6872055 TTTAAGGTTTATAGATTATGGGTTTAAGGATTATGA
1 TTTAAGGTTTATAGATTA-AGGTTTAAGGATTACGA
* * * * *
6872091 TTTACGGTTTATGCGTTTAAGGTTTAAGGGTTACGG
1 TTTAAGGTTTAT-AGATTAAGGTTTAAGGATTACGA
*
6872127 TTTATGGTTTATAGATTAATGGTT
1 TTTAAGGTTTATAGATTAA-GGTT
6872151 GGGGTTTAAG
Statistics
Matches: 48, Mismatches: 10, Indels: 4
0.77 0.16 0.06
Matches are distributed among these distances:
35 5 0.10
36 39 0.81
37 4 0.08
ACGTcount: A:0.25, C:0.03, G:0.26, T:0.46
Consensus pattern (35 bp):
TTTAAGGTTTATAGATTAAGGTTTAAGGATTACGA
Found at i:6872102 original size:14 final size:14
Alignment explanation
Indices: 6872070--6872137 Score: 64
Period size: 14 Copynumber: 4.7 Consensus size: 14
6872060 GGTTTATAGA
* *
6872070 TTATGGGTTTAAGGA
1 TTAT-GGTTTACGGT
*
6872085 TTATGATTTACGGT
1 TTATGGTTTACGGT
*
6872099 TTATGCGTTTAAGGT
1 TTATG-GTTTACGGT
* *
6872114 TTAAGGGTTACGGT
1 TTATGGTTTACGGT
6872128 TTATGGTTTA
1 TTATGGTTTA
6872138 TAGATTAATG
Statistics
Matches: 42, Mismatches: 10, Indels: 3
0.76 0.18 0.05
Matches are distributed among these distances:
14 27 0.64
15 15 0.36
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46
Consensus pattern (14 bp):
TTATGGTTTACGGT
Found at i:6872145 original size:28 final size:28
Alignment explanation
Indices: 6872070--6872178 Score: 94
Period size: 28 Copynumber: 3.8 Consensus size: 28
6872060 GGTTTATAGA
* **
6872070 TTATGGGTTTAAGGATTATGATTTACGGT
1 TTAT-GGTTTAAGGATTAAGGGTTACGGT
*
6872099 TTATGCGTTTAAGGTTTAAGGGTTACGGT
1 TTATG-GTTTAAGGATTAAGGGTTACGGT
* **
6872128 TTATGGTTTATA-GATTAATGGTTGGGGT
1 TTATGGTTTA-AGGATTAAGGGTTACGGT
* * *
6872156 TTAAGGTTTAGGGATTAGGGGTT
1 TTATGGTTTAAGGATTAAGGGTT
6872179 GAGGGTTAAG
Statistics
Matches: 65, Mismatches: 12, Indels: 7
0.77 0.14 0.08
Matches are distributed among these distances:
28 36 0.55
29 29 0.45
ACGTcount: A:0.22, C:0.03, G:0.32, T:0.43
Consensus pattern (28 bp):
TTATGGTTTAAGGATTAAGGGTTACGGT
Found at i:6872339 original size:15 final size:15
Alignment explanation
Indices: 6872320--6872356 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
6872310 ACTATTTTAA
6872320 GGTTTATGA-ATTAT
1 GGTTTATGAGATTAT
6872334 GAGTTTA-GAGATTAT
1 G-GTTTATGAGATTAT
6872349 GGTTTATG
1 GGTTTATG
6872357 GTTTAAGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 5
0.80 0.00 0.20
Matches are distributed among these distances:
14 8 0.40
15 12 0.60
ACGTcount: A:0.27, C:0.00, G:0.27, T:0.46
Consensus pattern (15 bp):
GGTTTATGAGATTAT
Found at i:6872340 original size:22 final size:21
Alignment explanation
Indices: 6872315--6872365 Score: 50
Period size: 22 Copynumber: 2.4 Consensus size: 21
6872305 GAGTTACTAT
6872315 TTTAAGGTTTATGAATTATGAG
1 TTTAAGGTTTATGAATTATG-G
* **
6872337 TTT-AGAGATTATGGTTTATGG
1 TTTAAG-GTTTATGAATTATGG
6872358 TTTAAGGT
1 TTTAAGGT
6872366 AGAGGTGCTC
Statistics
Matches: 23, Mismatches: 4, Indels: 5
0.72 0.12 0.16
Matches are distributed among these distances:
21 7 0.30
22 16 0.70
ACGTcount: A:0.27, C:0.00, G:0.25, T:0.47
Consensus pattern (21 bp):
TTTAAGGTTTATGAATTATGG
Found at i:6872589 original size:7 final size:7
Alignment explanation
Indices: 6872579--6872614 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
6872569 TTTATTATTA
6872579 CATTTCC
1 CATTTCC
6872586 CATTTCC
1 CATTTCC
6872593 CATTTCC
1 CATTTCC
6872600 CATTTCC
1 CATTTCC
6872607 CATTTCC
1 CATTTCC
6872614 C
1 C
6872615 GTGTATCTGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.14, C:0.44, G:0.00, T:0.42
Consensus pattern (7 bp):
CATTTCC
Found at i:6874571 original size:16 final size:16
Alignment explanation
Indices: 6874550--6874583 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
6874540 ATATAAATTC
6874550 AATAACAATTAATTTT
1 AATAACAATTAATTTT
*
6874566 AATAACAATTAGTTTT
1 AATAACAATTAATTTT
6874582 AA
1 AA
6874584 CTTTTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (16 bp):
AATAACAATTAATTTT
Found at i:6879414 original size:12 final size:12
Alignment explanation
Indices: 6879397--6879421 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
6879387 TGCAAGCCCC
6879397 GTGGTTGGTGGA
1 GTGGTTGGTGGA
6879409 GTGGTTGGTGGA
1 GTGGTTGGTGGA
6879421 G
1 G
6879422 ATAGGTATCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.00, G:0.60, T:0.32
Consensus pattern (12 bp):
GTGGTTGGTGGA
Found at i:6879836 original size:43 final size:43
Alignment explanation
Indices: 6879771--6879868 Score: 106
Period size: 43 Copynumber: 2.3 Consensus size: 43
6879761 TAGTCATATT
* ** * * * *
6879771 TTTAGTGGCGTTTGTGGTGGAAGTGCTGCTAAAGGCCATGAGC
1 TTTAGCGGCGTTCATGGAGGAAGCGCCGCTAAAGGCCATAAGC
* *
6879814 TTTAGCGGCGTTCATGGAGGAAGCGCCGCTAAAGGTCATAATC
1 TTTAGCGGCGTTCATGGAGGAAGCGCCGCTAAAGGCCATAAGC
*
6879857 TTTAGCGACGTT
1 TTTAGCGGCGTT
6879869 TGTGGAAAGA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
43 45 1.00
ACGTcount: A:0.21, C:0.17, G:0.33, T:0.29
Consensus pattern (43 bp):
TTTAGCGGCGTTCATGGAGGAAGCGCCGCTAAAGGCCATAAGC
Found at i:6881239 original size:18 final size:19
Alignment explanation
Indices: 6881202--6881244 Score: 54
Period size: 18 Copynumber: 2.3 Consensus size: 19
6881192 ATATATATTT
*
6881202 TTAAAAAATATATAATATA
1 TTAAAAAATATATAAAATA
6881221 -TAAAAAATACTA-AAAATA
1 TTAAAAAATA-TATAAAATA
6881239 TTAAAA
1 TTAAAA
6881245 TAAATGTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (19 bp):
TTAAAAAATATATAAAATA
Found at i:6891802 original size:21 final size:21
Alignment explanation
Indices: 6891776--6891818 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
6891766 CTCGGCGTGG
*
6891776 CCGGTTTTTTCTTTGAGGCAT
1 CCGGTTGTTTCTTTGAGGCAT
6891797 CCGGTTGTTTCTTTGAGGCAT
1 CCGGTTGTTTCTTTGAGGCAT
6891818 C
1 C
6891819 GGACTTAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.09, C:0.21, G:0.26, T:0.44
Consensus pattern (21 bp):
CCGGTTGTTTCTTTGAGGCAT
Found at i:6894840 original size:21 final size:21
Alignment explanation
Indices: 6894816--6894865 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
6894806 TTTGCCTAAG
*
6894816 ATGTGAATTGGATTAAATTGA
1 ATGTAAATTGGATTAAATTGA
*
6894837 ATGTAAATTGTATTAAATTG-
1 ATGTAAATTGGATTAAATTGA
6894857 ATGTTAAAT
1 ATG-TAAAT
6894866 CCATTCGTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.40, C:0.00, G:0.18, T:0.42
Consensus pattern (21 bp):
ATGTAAATTGGATTAAATTGA
Found at i:6895456 original size:24 final size:24
Alignment explanation
Indices: 6895429--6895489 Score: 68
Period size: 25 Copynumber: 2.5 Consensus size: 24
6895419 TAGCTCGTAT
***
6895429 GAGCTTCCCGTTAATGGCTCTCTA
1 GAGCTTCCCGTTAATGGCTCGAAA
* *
6895453 GAGCTTCTCGTTTTATGGCTCGAAA
1 GAGCTTCCCG-TTAATGGCTCGAAA
6895478 GAGCTTCCCGTT
1 GAGCTTCCCGTT
6895490 TGCATATTTG
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
24 11 0.37
25 19 0.63
ACGTcount: A:0.16, C:0.26, G:0.23, T:0.34
Consensus pattern (24 bp):
GAGCTTCCCGTTAATGGCTCGAAA
Found at i:6903038 original size:18 final size:18
Alignment explanation
Indices: 6903015--6903080 Score: 55
Period size: 16 Copynumber: 3.7 Consensus size: 18
6903005 TCTTTAGAAT
6903015 TTTTTGAATTTTTTATAA
1 TTTTTGAATTTTTTATAA
***
6903033 TTTTTGAA--AAGTATAA
1 TTTTTGAATTTTTTATAA
* *
6903049 ATTTTGAAATTTTTATAAA
1 TTTTTGAATTTTTTAT-AA
6903068 TGTTTTGAATTTT
1 T-TTTTGAATTTT
6903081 AAAAATTATT
Statistics
Matches: 35, Mismatches: 9, Indels: 6
0.70 0.18 0.12
Matches are distributed among these distances:
16 12 0.34
18 11 0.31
19 2 0.06
20 10 0.29
ACGTcount: A:0.33, C:0.00, G:0.09, T:0.58
Consensus pattern (18 bp):
TTTTTGAATTTTTTATAA
Found at i:6903081 original size:18 final size:17
Alignment explanation
Indices: 6903015--6903087 Score: 58
Period size: 18 Copynumber: 4.1 Consensus size: 17
6903005 TCTTTAGAAT
*
6903015 TTTTTGAATTTTTTATAA
1 TTTTTGAATTTTATA-AA
***
6903033 TTTTTGAAAAGTATAAA
1 TTTTTGAATTTTATAAA
6903050 -TTTTGAAATTTTTATAAA
1 TTTTTG-AA-TTTTATAAA
*
6903068 TGTTTTGAATTTTAAAAA
1 T-TTTTGAATTTTATAAA
6903086 TT
1 TT
6903088 ATTTTGATTT
Statistics
Matches: 43, Mismatches: 8, Indels: 9
0.72 0.13 0.15
Matches are distributed among these distances:
16 5 0.12
17 5 0.12
18 26 0.60
19 2 0.05
20 5 0.12
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (17 bp):
TTTTTGAATTTTATAAA
Found at i:6903099 original size:19 final size:18
Alignment explanation
Indices: 6903057--6903099 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
6903047 AAATTTTGAA
* *
6903057 ATTTTTATAAATGTTTTG
1 ATTTTTAAAAATATTTTG
*
6903075 AATTTTAAAAATTATTTTG
1 ATTTTTAAAAA-TATTTTG
6903094 ATTTTT
1 ATTTTT
6903100 TTTTTGTAAA
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 9 0.45
19 11 0.55
ACGTcount: A:0.33, C:0.00, G:0.07, T:0.60
Consensus pattern (18 bp):
ATTTTTAAAAATATTTTG
Found at i:6906540 original size:25 final size:25
Alignment explanation
Indices: 6906506--6906556 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
6906496 CAATTTTAGC
*
6906506 AAGAAAAAGAGAAATCATAAAACAT
1 AAGAAAAAGAAAAATCATAAAACAT
6906531 AAGAAAAAGAAAAATCATAAAACAT
1 AAGAAAAAGAAAAATCATAAAACAT
6906556 A
1 A
6906557 CTTTCGATCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.71, C:0.08, G:0.10, T:0.12
Consensus pattern (25 bp):
AAGAAAAAGAAAAATCATAAAACAT
Found at i:6910396 original size:42 final size:42
Alignment explanation
Indices: 6910311--6910397 Score: 120
Period size: 42 Copynumber: 2.1 Consensus size: 42
6910301 AATTGGGAAG
* * **
6910311 ATAATTCCCTTATTCTAATCAACTACTAAAACATAAGCGAAA
1 ATAATTCCCTGATTCTAATAAACTACTAAAACATAAAAGAAA
* *
6910353 ATAATTCCCTGATTCTAATAAACTACTAAAAGATAAAATAAA
1 ATAATTCCCTGATTCTAATAAACTACTAAAACATAAAAGAAA
6910395 ATA
1 ATA
6910398 TTTCTAGAAT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.49, C:0.17, G:0.05, T:0.29
Consensus pattern (42 bp):
ATAATTCCCTGATTCTAATAAACTACTAAAACATAAAAGAAA
Found at i:6910441 original size:19 final size:18
Alignment explanation
Indices: 6910419--6910458 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
6910409 TGAATAAAAC
6910419 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
6910438 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
6910456 TTA
1 TTA
6910459 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:6931161 original size:23 final size:23
Alignment explanation
Indices: 6931118--6931245 Score: 120
Period size: 23 Copynumber: 6.1 Consensus size: 23
6931108 TAAATATATT
6931118 TATTTTTTAAA-A--TTTTAAAA
1 TATTTTTTAAATACTTTTTAAAA
* *
6931138 TATTTTTTACATACTTTTTTAAA
1 TATTTTTTAAATACTTTTTAAAA
6931161 T-TTTTTT-AA-A--TTTTAAAA
1 TATTTTTTAAATACTTTTTAAAA
*
6931179 TATTTTTAAAATACTTTTTAAAA
1 TATTTTTTAAATACTTTTTAAAA
*
6931202 T-TTTTTTAAAATACTTTTTTAAA
1 TATTTTTT-AAATACTTTTTAAAA
6931225 -ATTTTTTAAA-A--TTTTAAAA
1 TATTTTTTAAATACTTTTTAAAA
6931244 TA
1 TA
6931246 AAAATGGGCT
Statistics
Matches: 89, Mismatches: 8, Indels: 22
0.75 0.07 0.18
Matches are distributed among these distances:
18 8 0.09
19 12 0.13
20 14 0.16
21 4 0.04
22 14 0.16
23 37 0.42
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (23 bp):
TATTTTTTAAATACTTTTTAAAA
Found at i:6931164 original size:41 final size:41
Alignment explanation
Indices: 6931119--6931213 Score: 145
Period size: 41 Copynumber: 2.3 Consensus size: 41
6931109 AAATATATTT
* * *
6931119 ATTTTTTAAAATTTTAAAATATTTTTTACATACTTTTTTAA
1 ATTTTTTAAAATTTTAAAATATTTTTAAAATACTTTTTAAA
*
6931160 ATTTTTTTAAATTTTAAAATATTTTTAAAATACTTTTTAAA
1 ATTTTTTAAAATTTTAAAATATTTTTAAAATACTTTTTAAA
6931201 ATTTTTTTAAAAT
1 A-TTTTTTAAAAT
6931214 ACTTTTTTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
41 38 0.79
42 10 0.21
ACGTcount: A:0.39, C:0.03, G:0.00, T:0.58
Consensus pattern (41 bp):
ATTTTTTAAAATTTTAAAATATTTTTAAAATACTTTTTAAA
Found at i:6931166 original size:11 final size:11
Alignment explanation
Indices: 6931130--6931239 Score: 97
Period size: 11 Copynumber: 10.1 Consensus size: 11
6931120 TTTTTTAAAA
6931130 TTTTAAAATATT
1 TTTTAAAAT-TT
* *
6931142 TTTTACATACTT
1 TTTTA-AAATTT
6931154 TTTT-AAATTT
1 TTTTAAAATTT
6931164 TTTT-AAA---
1 TTTTAAAATTT
*
6931171 TTTTAAAATAT
1 TTTTAAAATTT
*
6931182 TTTTAAAATACT
1 TTTTAAAAT-TT
6931194 TTTTAAAATTT
1 TTTTAAAATTT
6931205 TTTTAAAATACTT
1 TTTTAAAAT--TT
6931218 TTTTAAAA-TT
1 TTTTAAAATTT
6931228 TTTTAAAATTT
1 TTTTAAAATTT
6931239 T
1 T
6931240 AAAATAAAAA
Statistics
Matches: 83, Mismatches: 6, Indels: 19
0.77 0.06 0.18
Matches are distributed among these distances:
7 4 0.05
8 3 0.04
10 21 0.25
11 22 0.27
12 21 0.25
13 12 0.14
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (11 bp):
TTTTAAAATTT
Found at i:6939084 original size:26 final size:26
Alignment explanation
Indices: 6939052--6939104 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
6939042 TTTTTTTGTC
*
6939052 TTTTTAAATTATTTAAAAAATTTATT
1 TTTTTAAATTATTTAAAAAATTAATT
*
6939078 TTTTTAATTTATTTAAAAAATTAATT
1 TTTTTAAATTATTTAAAAAATTAATT
6939104 T
1 T
6939105 GCAAAATCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (26 bp):
TTTTTAAATTATTTAAAAAATTAATT
Found at i:6943070 original size:2 final size:2
Alignment explanation
Indices: 6943063--6943094 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
6943053 GGATCTGAGA
6943063 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6943095 CGCTTTTTGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6943164 original size:2 final size:2
Alignment explanation
Indices: 6943157--6943190 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
6943147 GGATCTGAGA
6943157 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
6943191 CGTTGTTTGA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6947034 original size:18 final size:18
Alignment explanation
Indices: 6946976--6947034 Score: 57
Period size: 18 Copynumber: 3.1 Consensus size: 18
6946966 TTTAAATATT
6946976 ATTTAAAAAATTATATT-A
1 ATTTAAAAAATTA-ATTAA
**
6946994 ATTATAAAACATATTTTTTAA
1 ATT-TAAAA-A-ATTAATTAA
6947015 ATTTAAAAAATTAATTAA
1 ATTTAAAAAATTAATTAA
6947033 AT
1 AT
6947035 GTTGACATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 12 0.36
19 6 0.18
20 8 0.24
21 7 0.21
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (18 bp):
ATTTAAAAAATTAATTAA
Found at i:6956096 original size:16 final size:16
Alignment explanation
Indices: 6956075--6956120 Score: 74
Period size: 16 Copynumber: 2.9 Consensus size: 16
6956065 AGTTGATTTG
6956075 CTATTACACCTCTATT
1 CTATTACACCTCTATT
*
6956091 CTATTACACCTTTATT
1 CTATTACACCTCTATT
*
6956107 CCATTACACCTCTA
1 CTATTACACCTCTA
6956121 ATCCAATACA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 27 1.00
ACGTcount: A:0.26, C:0.33, G:0.00, T:0.41
Consensus pattern (16 bp):
CTATTACACCTCTATT
Found at i:6956125 original size:16 final size:16
Alignment explanation
Indices: 6956077--6956130 Score: 72
Period size: 16 Copynumber: 3.4 Consensus size: 16
6956067 TTGATTTGCT
*
6956077 ATTACACCTCTATTCT
1 ATTACACCTCTATTCC
*
6956093 ATTACACCTTTATTCC
1 ATTACACCTCTATTCC
*
6956109 ATTACACCTCTAATCC
1 ATTACACCTCTATTCC
*
6956125 AATACA
1 ATTACA
6956131 GCGAACCAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 33 1.00
ACGTcount: A:0.31, C:0.31, G:0.00, T:0.37
Consensus pattern (16 bp):
ATTACACCTCTATTCC
Found at i:6956922 original size:27 final size:28
Alignment explanation
Indices: 6956865--6956930 Score: 125
Period size: 27 Copynumber: 2.4 Consensus size: 28
6956855 AAATAAAAAA
6956865 TACCAAAATATTATATATATTTTTTATT
1 TACCAAAATATTATATATATTTTTTATT
6956893 TACCAAAATATTATATAT-TTTTTTATT
1 TACCAAAATATTATATATATTTTTTATT
6956920 TACCAAAATAT
1 TACCAAAATAT
6956931 ACCAAAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
27 20 0.53
28 18 0.47
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (28 bp):
TACCAAAATATTATATATATTTTTTATT
Found at i:6956998 original size:27 final size:27
Alignment explanation
Indices: 6956956--6957018 Score: 108
Period size: 27 Copynumber: 2.3 Consensus size: 27
6956946 CAGGACTGAA
6956956 TGGCGGCACCAATGGTGCCATTCTCAT
1 TGGCGGCACCAATGGTGCCATTCTCAT
* *
6956983 TGGCAGCACCAGTGGTGCCATTCTCAT
1 TGGCGGCACCAATGGTGCCATTCTCAT
6957010 TGGCGGCAC
1 TGGCGGCAC
6957019 AGGACTAAAA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 33 1.00
ACGTcount: A:0.17, C:0.30, G:0.29, T:0.24
Consensus pattern (27 bp):
TGGCGGCACCAATGGTGCCATTCTCAT
Found at i:6957588 original size:21 final size:21
Alignment explanation
Indices: 6957547--6957588 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
6957537 ATTTTAGAAA
**
6957547 AAAAACAAAAATTAGTTGTCG
1 AAAAACAAAAATTAGGAGTCG
*
6957568 AAAAACAAAAATTGGGAGTCG
1 AAAAACAAAAATTAGGAGTCG
6957589 CAACCAATCT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.52, C:0.10, G:0.19, T:0.19
Consensus pattern (21 bp):
AAAAACAAAAATTAGGAGTCG
Found at i:6958316 original size:27 final size:27
Alignment explanation
Indices: 6958286--6958344 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
6958276 AGTCCTATGT
6958286 CGCCAATAAGAATAGCACCACTGGTGC
1 CGCCAATAAGAATAGCACCACTGGTGC
* * *
6958313 CGCCAATGAGAATGGCACCATTGGTGC
1 CGCCAATAAGAATAGCACCACTGGTGC
6958340 CGCCA
1 CGCCA
6958345 TTGTTAGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.29, C:0.31, G:0.25, T:0.15
Consensus pattern (27 bp):
CGCCAATAAGAATAGCACCACTGGTGC
Found at i:6959861 original size:18 final size:18
Alignment explanation
Indices: 6959819--6959853 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
6959809 TAATAGCAAT
6959819 TTTGGGCCAATTGATGGC
1 TTTGGGCCAATTGATGGC
6959837 TTTGGGCCGAA-TGATGG
1 TTTGGGCC-AATTGATGG
6959854 TATTGGGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.17, C:0.14, G:0.37, T:0.31
Consensus pattern (18 bp):
TTTGGGCCAATTGATGGC
Found at i:6960641 original size:15 final size:15
Alignment explanation
Indices: 6960621--6960651 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
6960611 ATTCAAATTC
6960621 AATAAAATTGCTATG
1 AATAAAATTGCTATG
*
6960636 AATAAAGTTGCTATG
1 AATAAAATTGCTATG
6960651 A
1 A
6960652 GTGATGTTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.45, C:0.06, G:0.16, T:0.32
Consensus pattern (15 bp):
AATAAAATTGCTATG
Found at i:6975634 original size:22 final size:22
Alignment explanation
Indices: 6975589--6975643 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
6975579 GTTGATGGTT
*
6975589 ATTTAGTTTCAATTATGTATTTG
1 ATTTAGTTTAAATTA-GTATTTG
6975612 ATTTATGTTTAAATTA-TATTTG
1 ATTTA-GTTTAAATTAGTATTTG
*
6975634 AATTAAGTTT
1 -ATTTAGTTT
6975644 GAACAATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 5
0.80 0.06 0.14
Matches are distributed among these distances:
22 10 0.36
23 9 0.32
24 9 0.32
ACGTcount: A:0.31, C:0.02, G:0.11, T:0.56
Consensus pattern (22 bp):
ATTTAGTTTAAATTAGTATTTG
Found at i:6978595 original size:41 final size:41
Alignment explanation
Indices: 6978515--6978596 Score: 114
Period size: 41 Copynumber: 2.0 Consensus size: 41
6978505 CTTTTTTGAA
* *
6978515 ATTAAATATTTTAGTCACTCTCTCGTTATTTGCCGTTAGAT
1 ATTAAATATTTTAGCCACTCTCTCGTTATTTGCCATTAGAT
6978556 ATTAAATATTTTAGCCACTCTC-CTGTTAGTTT-CCATTAGAT
1 ATTAAATATTTTAGCCACTCTCTC-GTTA-TTTGCCATTAGAT
6978597 GAGTGTCGGA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
40 1 0.03
41 33 0.89
42 3 0.08
ACGTcount: A:0.26, C:0.18, G:0.11, T:0.45
Consensus pattern (41 bp):
ATTAAATATTTTAGCCACTCTCTCGTTATTTGCCATTAGAT
Found at i:6997176 original size:21 final size:21
Alignment explanation
Indices: 6997152--6997220 Score: 84
Period size: 21 Copynumber: 3.3 Consensus size: 21
6997142 CAGCAACTTA
* *
6997152 AAGCAGAGGCGACAGCGAGGG
1 AAGCAGAGGCCACAGCGAGAG
* * *
6997173 AAGCAGAGACTACAGCAAGAG
1 AAGCAGAGGCCACAGCGAGAG
*
6997194 AAGCAGATGCCACAGCGAGAG
1 AAGCAGAGGCCACAGCGAGAG
6997215 AAGCAG
1 AAGCAG
6997221 CGAGAGAAGT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.41, C:0.20, G:0.36, T:0.03
Consensus pattern (21 bp):
AAGCAGAGGCCACAGCGAGAG
Found at i:6997223 original size:12 final size:12
Alignment explanation
Indices: 6997206--6997244 Score: 69
Period size: 12 Copynumber: 3.2 Consensus size: 12
6997196 GCAGATGCCA
6997206 CAGCGAGAGAAG
1 CAGCGAGAGAAG
6997218 CAGCGAGAGAAG
1 CAGCGAGAGAAG
*
6997230 TAGCGAGAGAAG
1 CAGCGAGAGAAG
6997242 CAG
1 CAG
6997245 AGGTTCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.41, C:0.15, G:0.41, T:0.03
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:6997879 original size:42 final size:42
Alignment explanation
Indices: 6997785--6997928 Score: 207
Period size: 42 Copynumber: 3.4 Consensus size: 42
6997775 NNNNNNNNNN
*
6997785 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCTTTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGC-GTTTTTTTC
6997828 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTTTC
1 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTTTC
* * * *
6997870 TAAGCGCCGCTAAAGAACATGAGCCTTAGCGGCGTTTCTTTATG
1 TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTT-TTT-TC
*
6997914 TAAGCGCCGCAAAAG
1 TAAGCGCCGCTAAAG
6997929 TTAGCGACGT
Statistics
Matches: 93, Mismatches: 6, Indels: 3
0.91 0.06 0.03
Matches are distributed among these distances:
42 42 0.45
43 36 0.39
44 15 0.16
ACGTcount: A:0.26, C:0.21, G:0.24, T:0.30
Consensus pattern (42 bp):
TAAGCGCCGCTAAAGAACATGATCTTTAGGGGCGTTTTTTTC
Found at i:7003934 original size:22 final size:22
Alignment explanation
Indices: 7003906--7003949 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
7003896 CTTCATCTTT
*
7003906 TGAATGCAATAAATATATATAA
1 TGAATGCAATAAATATACATAA
7003928 TGAATGCAATAAATATACATAA
1 TGAATGCAATAAATATACATAA
7003950 AATATCTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.55, C:0.07, G:0.09, T:0.30
Consensus pattern (22 bp):
TGAATGCAATAAATATACATAA
Found at i:7006335 original size:18 final size:18
Alignment explanation
Indices: 7006289--7006335 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7006279 GCTTGCTTAA
*
7006289 TATTTGATTTA-TTATTT
1 TATTTTATTTATTTATTT
*
7006306 TATTTTAGTTATTTATTT
1 TATTTTATTTATTTATTT
7006324 TAATTTT-TTTAT
1 T-ATTTTATTTAT
7006336 CTGACTTGGA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 9 0.36
18 11 0.44
19 5 0.20
ACGTcount: A:0.23, C:0.00, G:0.04, T:0.72
Consensus pattern (18 bp):
TATTTTATTTATTTATTT
Found at i:7006731 original size:16 final size:16
Alignment explanation
Indices: 7006686--7006733 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
7006676 AAAGTTATCA
7006686 AAAAAAGTACAAAAAAAT
1 AAAAAA-TA-AAAAAAAT
* **
7006704 AAAACACGAAAAAAAT
1 AAAAAATAAAAAAAAT
7006720 AAAAAATAAAAAAA
1 AAAAAATAAAAAAA
7006734 TATTATGTGG
Statistics
Matches: 24, Mismatches: 6, Indels: 2
0.75 0.19 0.06
Matches are distributed among these distances:
16 19 0.79
18 5 0.21
ACGTcount: A:0.81, C:0.06, G:0.04, T:0.08
Consensus pattern (16 bp):
AAAAAATAAAAAAAAT
Found at i:7054109 original size:87 final size:86
Alignment explanation
Indices: 7053977--7054145 Score: 259
Period size: 87 Copynumber: 2.0 Consensus size: 86
7053967 TGGGTTTTGG
*
7053977 TCAAGTTGCAATTATCCTAGTAAACAATTTGCAAGCTTCTCTTTTTCCCTAATTGGAGTTTATAT
1 TCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCTCTTTTTCCCTAATTGGAGTTTATAT
*
7054042 TGTTTAGAGATTTGGATGAGTGA
66 TATTT--AGATTTGGATGAGTGA
* * * *
7054065 TCAAGTTGCAATTATCCAAGTACAGAA-TTGCAAGTTTCTCTTTTTCCCTATTTGGAGTTTATAT
1 TCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCTCTTTTTCCCTAATTGGAGTTTATAT
7054129 TATTTAGATTTGGATGA
66 TATTTAGATTTGGATGA
7054146 TTGGGGGATT
Statistics
Matches: 75, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
85 12 0.16
87 39 0.52
88 24 0.32
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.42
Consensus pattern (86 bp):
TCAAGTTGCAATTATCCAAGTAAACAATTTGCAAGCTTCTCTTTTTCCCTAATTGGAGTTTATAT
TATTTAGATTTGGATGAGTGA
Found at i:7064794 original size:31 final size:31
Alignment explanation
Indices: 7064759--7064829 Score: 97
Period size: 31 Copynumber: 2.3 Consensus size: 31
7064749 GAATATAGGA
* *
7064759 TGCCGAATTTGATTTATGTATGATTATACAT
1 TGCCGAATTTGATTCATGAATGATTATACAT
* * *
7064790 TGCCGAACTTGATTCGTGAATGGTTATACAT
1 TGCCGAATTTGATTCATGAATGATTATACAT
7064821 TGCCGAATT
1 TGCCGAATT
7064830 GTTGGGTATA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.39
Consensus pattern (31 bp):
TGCCGAATTTGATTCATGAATGATTATACAT
Found at i:7064821 original size:184 final size:185
Alignment explanation
Indices: 7064512--7064868 Score: 504
Period size: 184 Copynumber: 1.9 Consensus size: 185
7064502 GTTTTATACC
* * * * *
7064512 TTGCTGAAATTAAATTGTACATGGTTATATATTTTCGATATTGAATTGTTTATGTATATATGATG
1 TTGCTGAAATTAAATTATACATGGTTATATATTGTCAATATTGAATTGTTTATGAATATAGGATG
* * * *
7064577 CCGAATTGGATTTGTATTTGATTATACATTATCAAACTTGATTCGTGTATGGCTATACATTGCCA
66 CCGAATTGGATTTATATATGATTATACATTACCAAACTTGATTCGTGAATGGCTATACATTGCCA
* **
7064642 AATTGTTTGGTATATGGATA-TAAGTTGCTGAATT-GATTCGTACAGGGTTGTACA
131 AATTGTTGGGTATATCAATATTAA-TTGCTGAATTGGATTCGTACAGGGTTGTACA
7064696 TTGCTGAAATT-AATTCATACATGGTTATATATTGTCAATATTGAATTGTTTATGAATATAGGAT
1 TTGCTGAAATTAAATT-ATACATGGTTATATATTGTCAATATTGAATTGTTTATGAATATAGGAT
* * * * *
7064760 GCCGAATTTGATTTATGTATGATTATACATTGCCGAACTTGATTCGTGAATGGTTATACATTGCC
65 GCCGAATTGGATTTATATATGATTATACATTACCAAACTTGATTCGTGAATGGCTATACATTGCC
* *
7064825 GAATTGTTGGGTATATCAATATTCATTGCTGAATTGGATTCGTA
130 AAATTGTTGGGTATATCAATATTAATTGCTGAATTGGATTCGTA
7064869 TATGAATATA
Statistics
Matches: 151, Mismatches: 19, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
183 4 0.03
184 137 0.91
185 10 0.07
ACGTcount: A:0.29, C:0.10, G:0.19, T:0.42
Consensus pattern (185 bp):
TTGCTGAAATTAAATTATACATGGTTATATATTGTCAATATTGAATTGTTTATGAATATAGGATG
CCGAATTGGATTTATATATGATTATACATTACCAAACTTGATTCGTGAATGGCTATACATTGCCA
AATTGTTGGGTATATCAATATTAATTGCTGAATTGGATTCGTACAGGGTTGTACA
Found at i:7066413 original size:7 final size:7
Alignment explanation
Indices: 7066401--7066433 Score: 57
Period size: 7 Copynumber: 4.6 Consensus size: 7
7066391 GATGAATTTA
7066401 ATTTAAT
1 ATTTAAT
7066408 ATTTAAT
1 ATTTAAT
7066415 ATTTAAT
1 ATTTAAT
7066422 ATTTAAAT
1 ATTT-AAT
7066430 ATTT
1 ATTT
7066434 TATTTATTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
7 18 0.72
8 7 0.28
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTAAT
Found at i:7066953 original size:15 final size:15
Alignment explanation
Indices: 7066926--7066967 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
7066916 AAATGTTGGC
7066926 AAAAAAAAA--AATG
1 AAAAAAAAATGAATG
7066939 AAAAAAAAATGAATG
1 AAAAAAAAATGAATG
**
7066954 AAACGAAAATGAAT
1 AAAAAAAAATGAAT
7066968 TGACTATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 9 0.36
15 16 0.64
ACGTcount: A:0.74, C:0.02, G:0.12, T:0.12
Consensus pattern (15 bp):
AAAAAAAAATGAATG
Found at i:7068706 original size:20 final size:21
Alignment explanation
Indices: 7068681--7068720 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7068671 TATATATATA
7068681 TATAATTTGTTTTTA-AAAAG
1 TATAATTTGTTTTTATAAAAG
7068701 TATAATTTGTTTTTATAAAA
1 TATAATTTGTTTTTATAAAA
7068721 TTAACCTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
TATAATTTGTTTTTATAAAAG
Found at i:7069342 original size:20 final size:21
Alignment explanation
Indices: 7069317--7069356 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 21
7069307 TATATATATA
7069317 TATAATTTGTTTTTA-AAAAG
1 TATAATTTGTTTTTATAAAAG
7069337 TATAATTTGTTTTTATAAAA
1 TATAATTTGTTTTTATAAAA
7069357 TTAACCTGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (21 bp):
TATAATTTGTTTTTATAAAAG
Found at i:7069560 original size:636 final size:636
Alignment explanation
Indices: 7068348--7069614 Score: 2462
Period size: 636 Copynumber: 2.0 Consensus size: 636
7068338 ATAGATTTAA
* *
7068348 TTTTATGTGTTATAACTTACATAATATATAAAAATGACATAACATATTACAAACTTTAAAAAAGG
1 TTTTATGTGTTATAAATTACATAATATATAAAAATAACATAACATATTACAAACTTTAAAAAAGG
**
7068413 GCATGGCCGAGTTGGGCTCGGGCTTGAACATTTAAGGTCCGAGCTCGACCCATATTTTAAACGGA
66 GCATGGCCGAGTTGGGCTCAAGCTTGAACATTTAAGGTCCGAGCTCGACCCATATTTTAAACGGA
7068478 TCTAATTTTTTTATCCAAACTCTCTCAATTTTTGGATGGGCCTTAAGACTTGATCGAGTAACTCA
131 TCTAATTTTTTTATCCAAACTCTCTCAATTTTTGGATGGGCCTTAAGACTTGATCGAGTAACTCA
7068543 ACCCGTGAATAAATCTAATTAATACTGAGTTTTAGTGATGGTGGTAAATCTGGGACATGTTAGGT
196 ACCCGTGAATAAATCTAATTAATACTGAGTTTTAGTGATGGTGGTAAATCTGGGACATGTTAGGT
7068608 TTAGCTAGTGCCGGGGTTGTTTCGGTTAAGGTTTAGTGGAAGCTCTTGATTAGTTCTTTTTAATA
261 TTAGCTAGTGCCGGGGTTGTTTCGGTTAAGGTTTAGTGGAAGCTCTTGATTAGTTCTTTTTAATA
7068673 TATATATATATAATTTGTTTTTAAAAAGTATAATTTGTTTTTATAAAATTAACCTGAAATGGGTA
326 TATATATATATAATTTGTTTTTAAAAAGTATAATTTGTTTTTATAAAATTAACCTGAAATGGGTA
7068738 GCAAAATTGTTGACTGTTAGTCATTGCAATATTGTGGGTGACATTGAGAAATAAAACACTCACAA
391 GCAAAATTGTTGACTGTTAGTCATTGCAATATTGTGGGTGACATTGAGAAATAAAACACTCACAA
7068803 AGGTTAGAGTTGAATTTTGCAACTCTCTCATCTCTATTCTCATTCTAATATGATGGACGCATGAA
456 AGGTTAGAGTTGAATTTTGCAACTCTCTCATCTCTATTCTCATTCTAATATGATGGACGCATGAA
7068868 AATGTATACTTTAAATTTAATTGAAAACTTTTCACACTTAAATAGGATATGGATGCCAGAACCCA
521 AATGTATACTTTAAATTTAATTGAAAACTTTTCACACTTAAATAGGATATGGATGCCAGAACCCA
7068933 ACAAGAGTATGAAGAATTGAAGCAGAAAGTGAGGAGAATGTTGGTGGCAAT
586 ACAAGAGTATGAAGAATTGAAGCAGAAAGTGAGGAGAATGTTGGTGGCAAT
*
7068984 TTTTATGTGTTATAAATTACATAATATATAAAAATAACCTAACATATTACAAACTTTAAAAAAGG
1 TTTTATGTGTTATAAATTACATAATATATAAAAATAACATAACATATTACAAACTTTAAAAAAGG
*
7069049 GCATGGCCGAGTTGGGCTCAAGCTTGAACATTTAAGGTCTGAGCTCGACCCATATTTTAAACGGA
66 GCATGGCCGAGTTGGGCTCAAGCTTGAACATTTAAGGTCCGAGCTCGACCCATATTTTAAACGGA
*
7069114 TCTAATTTTTTTTTCCAAACTCTCTCAATTTTTGGATGGGCCTTAAGACTTGATCGAGTAACTCA
131 TCTAATTTTTTTATCCAAACTCTCTCAATTTTTGGATGGGCCTTAAGACTTGATCGAGTAACTCA
7069179 ACCCGTGAATAAATCTAATTAATACTGAGTTTTAGTGATGGTGGTAAATCTGGGACATGTTAGGT
196 ACCCGTGAATAAATCTAATTAATACTGAGTTTTAGTGATGGTGGTAAATCTGGGACATGTTAGGT
7069244 TTAGCTAGTGCCGGGGTTGTTTCGGTTAAGGTTTAGTGGAAGCTCTTGATTAGTTCTTTTTAATA
261 TTAGCTAGTGCCGGGGTTGTTTCGGTTAAGGTTTAGTGGAAGCTCTTGATTAGTTCTTTTTAATA
7069309 TATATATATATAATTTGTTTTTAAAAAGTATAATTTGTTTTTATAAAATTAACCTGAAATGGGTA
326 TATATATATATAATTTGTTTTTAAAAAGTATAATTTGTTTTTATAAAATTAACCTGAAATGGGTA
7069374 GCAAAATTGTTGACTGTTAGTCATTGCAATATTGTGGGTGACATTGAGAAATAAAACACTCACAA
391 GCAAAATTGTTGACTGTTAGTCATTGCAATATTGTGGGTGACATTGAGAAATAAAACACTCACAA
7069439 AGGTTAGAGTTGAATTTTGCAACTCTCTCATCTCTATTCTCATTCTAATATGATGGACGCATGAA
456 AGGTTAGAGTTGAATTTTGCAACTCTCTCATCTCTATTCTCATTCTAATATGATGGACGCATGAA
*
7069504 AATGTATACTTTAAATTTAATTGAAAACTTTTCACACTTAAATAGGATATGGATGCCAGAACTCA
521 AATGTATACTTTAAATTTAATTGAAAACTTTTCACACTTAAATAGGATATGGATGCCAGAACCCA
7069569 ACAAGAGTATGAAGAATTGAAGCAGAAAGTGAGGAGAATGTTGGTG
586 ACAAGAGTATGAAGAATTGAAGCAGAAAGTGAGGAGAATGTTGGTG
7069615 ACAAATATGG
Statistics
Matches: 623, Mismatches: 8, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
636 623 1.00
ACGTcount: A:0.33, C:0.13, G:0.19, T:0.35
Consensus pattern (636 bp):
TTTTATGTGTTATAAATTACATAATATATAAAAATAACATAACATATTACAAACTTTAAAAAAGG
GCATGGCCGAGTTGGGCTCAAGCTTGAACATTTAAGGTCCGAGCTCGACCCATATTTTAAACGGA
TCTAATTTTTTTATCCAAACTCTCTCAATTTTTGGATGGGCCTTAAGACTTGATCGAGTAACTCA
ACCCGTGAATAAATCTAATTAATACTGAGTTTTAGTGATGGTGGTAAATCTGGGACATGTTAGGT
TTAGCTAGTGCCGGGGTTGTTTCGGTTAAGGTTTAGTGGAAGCTCTTGATTAGTTCTTTTTAATA
TATATATATATAATTTGTTTTTAAAAAGTATAATTTGTTTTTATAAAATTAACCTGAAATGGGTA
GCAAAATTGTTGACTGTTAGTCATTGCAATATTGTGGGTGACATTGAGAAATAAAACACTCACAA
AGGTTAGAGTTGAATTTTGCAACTCTCTCATCTCTATTCTCATTCTAATATGATGGACGCATGAA
AATGTATACTTTAAATTTAATTGAAAACTTTTCACACTTAAATAGGATATGGATGCCAGAACCCA
ACAAGAGTATGAAGAATTGAAGCAGAAAGTGAGGAGAATGTTGGTGGCAAT
Found at i:7076272 original size:52 final size:52
Alignment explanation
Indices: 7076210--7076313 Score: 172
Period size: 52 Copynumber: 2.0 Consensus size: 52
7076200 AACTTTTAAT
*
7076210 TGTTTAATAGAAAGAGACCCAAGTGATTCAATGTCCAGTGAATAGGATGGTG
1 TGTTTAATAGAAAGAGACCCAAGTGATTCAATGTCCAGTGAACAGGATGGTG
* * *
7076262 TGTTTAATAGAAAGAGACTCAAGTGATTCAATGTCCCGTGAACATGATGGTG
1 TGTTTAATAGAAAGAGACCCAAGTGATTCAATGTCCAGTGAACAGGATGGTG
7076314 AACATGCAAT
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
52 48 1.00
ACGTcount: A:0.34, C:0.12, G:0.26, T:0.28
Consensus pattern (52 bp):
TGTTTAATAGAAAGAGACCCAAGTGATTCAATGTCCAGTGAACAGGATGGTG
Found at i:7076494 original size:16 final size:16
Alignment explanation
Indices: 7076475--7076531 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
7076465 AATTTGATAC
7076475 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
7076491 AATTTTGATAACAATT
1 AATTTTAATAACAATT
7076507 AATTTTAATAACAATT
1 AATTTTAATAACAATT
*
7076523 AGTTTTAAT
1 AATTTTAAT
7076532 TTTAATAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 38 1.00
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.46
Consensus pattern (16 bp):
AATTTTAATAACAATT
Found at i:7076514 original size:22 final size:23
Alignment explanation
Indices: 7076505--7076566 Score: 90
Period size: 22 Copynumber: 2.7 Consensus size: 23
7076495 TTGATAACAA
* *
7076505 TTAATTTTAATAACAAT-TAGTT
1 TTAATTTTAATAAAAATATAATT
7076527 TTAATTTTAATAAAAATATAATT
1 TTAATTTTAATAAAAATATAATT
7076550 TTAATTTTAATTAAAAA
1 TTAATTTTAA-TAAAAA
7076567 CAGGTCGGGC
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
22 16 0.44
23 14 0.39
24 6 0.17
ACGTcount: A:0.48, C:0.02, G:0.02, T:0.48
Consensus pattern (23 bp):
TTAATTTTAATAAAAATATAATT
Found at i:7078019 original size:43 final size:43
Alignment explanation
Indices: 7077966--7078054 Score: 108
Period size: 43 Copynumber: 2.1 Consensus size: 43
7077956 ATAAATAGAT
* * * * *
7077966 AAAACAAATATACA-TAATATTAAATTTAAGTATTTTAGAAGTA
1 AAAAAAAATATA-AGTAATATCAAATTTAAATATTTAAAAAGTA
*
7078009 AAAAAAAATATAAGTAATATCATATTTAAATATTTAAAAAGTA
1 AAAAAAAATATAAGTAATATCAAATTTAAATATTTAAAAAGTA
7078052 AAA
1 AAA
7078055 GAATAATAAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 1 0.03
43 38 0.97
ACGTcount: A:0.58, C:0.03, G:0.06, T:0.33
Consensus pattern (43 bp):
AAAAAAAATATAAGTAATATCAAATTTAAATATTTAAAAAGTA
Found at i:7078063 original size:108 final size:107
Alignment explanation
Indices: 7077911--7078129 Score: 325
Period size: 108 Copynumber: 2.0 Consensus size: 107
7077901 GAAAGGGAAG
7077911 TATAAGTAACATCAAATCTAAATAAAAAAGGTAAAAGAATAATAAATAAATAGATAAAACAAATA
1 TATAAGTAACATCAAATCTAAATAAAAAAGGTAAAAGAATAATAAATAAATAGATAAAACAAATA
* * *
7077976 TACATAATATTAAATTTAAGTATTTTAGAAGTAAAA-AAAAA
66 TAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAAAAA
* * *
7078017 TATAAGTAATATCATATTTAAATATTTAAAAA-GTAAAAGAATAATAAATAAATAGATAAAACAA
1 TATAAGTAACATCAAATCTAAATA---AAAAAGGTAAAAGAATAATAAATAAATAGATAAAACAA
* *
7078081 ATATAAATAATATTAAATTTAAGTCTTTAAAAAGTAAAAGAACAA
63 ATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAAAAA
7078126 TATA
1 TATA
7078130 TAAATATAAT
Statistics
Matches: 101, Mismatches: 8, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
106 21 0.21
108 67 0.66
109 13 0.13
ACGTcount: A:0.60, C:0.04, G:0.07, T:0.29
Consensus pattern (107 bp):
TATAAGTAACATCAAATCTAAATAAAAAAGGTAAAAGAATAATAAATAAATAGATAAAACAAATA
TAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAAAAA
Found at i:7078070 original size:30 final size:30
Alignment explanation
Indices: 7078035--7078136 Score: 78
Period size: 33 Copynumber: 3.2 Consensus size: 30
7078025 ATATCATATT
7078035 TAAATATTTAAAAAGTAAAAGAATAATAAA
1 TAAATATTTAAAAAGTAAAAGAATAATAAA
* * * * *
7078065 TAAATAGATAAAACAAATATAAATAATATTAAA
1 TAAATA-TTTAAA-AAGTA-AAAGAATAATAAA
* * * *
7078098 TTTAAGTCTTTAAAAAGTAAAAGAACAATATA
1 --TAAATATTTAAAAAGTAAAAGAATAATAAA
7078130 TAAATAT
1 TAAATAT
7078137 AATAAATAAA
Statistics
Matches: 51, Mismatches: 16, Indels: 10
0.66 0.21 0.13
Matches are distributed among these distances:
30 11 0.22
31 4 0.08
32 13 0.25
33 15 0.29
34 4 0.08
35 4 0.08
ACGTcount: A:0.62, C:0.03, G:0.06, T:0.29
Consensus pattern (30 bp):
TAAATATTTAAAAAGTAAAAGAATAATAAA
Found at i:7078092 original size:65 final size:65
Alignment explanation
Indices: 7078009--7078212 Score: 266
Period size: 65 Copynumber: 3.1 Consensus size: 65
7077999 TTTAGAAGTA
* * * * * *
7078009 AAAAAAAATATAAGTAATATCATATTTAAATATTTAAAAAGTAAAAGAATAATAAATAAATAGAT
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAAT
*
7078074 AAAACAAATATAAATAATATTAAATTTAAGTCTTTAAAAAGTAAAAGAACAATATATAAATATAA
1 AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAG---AATA-ATAAATA-AA
7078139 TAAAT
61 TAAAT
* *
7078144 AAAACAAATATATATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAATAATAAAAAAATAAA
1 AAAACAAATATAAATAATATTAAATTTAAGTATTT-AAAAAGTAAAAGAATAATAAATAAATAAA
7078209 -
65 T
7078209 AAAA
1 AAAA
7078213 TAGATAAAAC
Statistics
Matches: 123, Mismatches: 10, Indels: 12
0.85 0.07 0.08
Matches are distributed among these distances:
65 45 0.37
66 6 0.05
67 6 0.05
68 8 0.07
69 7 0.06
70 39 0.32
71 12 0.10
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.28
Consensus pattern (65 bp):
AAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAGTAAAAGAATAATAAATAAATAAAT
Found at i:7078112 original size:35 final size:35
Alignment explanation
Indices: 7078073--7078182 Score: 102
Period size: 35 Copynumber: 3.1 Consensus size: 35
7078063 AATAAATAGA
*
7078073 TAAAACAAATATAAATAATATTAAATTTAAGTCTT
1 TAAAACAAATATAAATAATATTAAATTTAAGTATT
* * **
7078108 TAAAA-AGTAA-A-AGAACAATATATAAATATAA-TAAA
1 TAAAACA--AATATA-AATAATAT-TAAATTTAAGTATT
*
7078143 TAAAACAAATATATATAATATTAAATTTAAGTATT
1 TAAAACAAATATAAATAATATTAAATTTAAGTATT
7078178 TAAAA
1 TAAAA
7078183 AAGTAAAAGA
Statistics
Matches: 57, Mismatches: 10, Indels: 16
0.69 0.12 0.19
Matches are distributed among these distances:
34 12 0.21
35 33 0.58
36 12 0.21
ACGTcount: A:0.60, C:0.04, G:0.04, T:0.33
Consensus pattern (35 bp):
TAAAACAAATATAAATAATATTAAATTTAAGTATT
Found at i:7078141 original size:74 final size:74
Alignment explanation
Indices: 7078059--7078231 Score: 255
Period size: 70 Copynumber: 2.4 Consensus size: 74
7078049 GTAAAAGAAT
*
7078059 AATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAGTCTTT-AAAAAGTAAAAGAA
1 AATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAA
* *
7078123 CAATATATA
66 CAATAAAAA
* *
7078132 AAT--AT-AATAAATAAAACAAATATATATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAA
1 AATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAA
*
7078194 TAATAAAAA
66 CAATAAAAA
*
7078203 AATAAAAAAATAGATAAAACAAATATAAA
1 AATAAATAAATAGATAAAACAAATATAAA
7078232 AGGATGAAAT
Statistics
Matches: 87, Mismatches: 9, Indels: 7
0.84 0.09 0.07
Matches are distributed among these distances:
70 39 0.45
71 25 0.29
73 4 0.05
74 19 0.22
ACGTcount: A:0.65, C:0.03, G:0.05, T:0.27
Consensus pattern (74 bp):
AATAAATAAATAGATAAAACAAATATAAATAATATTAAATTTAAGTATTTAAAAAAGTAAAAGAA
CAATAAAAA
Found at i:7078204 original size:20 final size:20
Alignment explanation
Indices: 7078178--7078232 Score: 67
Period size: 19 Copynumber: 2.7 Consensus size: 20
7078168 TTTAAGTATT
* *
7078178 TAAAAAAGTAAAAGAATA-A
1 TAAAAAAATAAAAAAATAGA
7078197 TAAAAAAATAAAAAAATAGA
1 TAAAAAAATAAAAAAATAGA
7078217 TAAAACAAATATAAAA
1 TAAAA-AAATA-AAAA
7078233 GGATGAAATT
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
19 16 0.52
20 6 0.19
21 5 0.16
22 4 0.13
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.16
Consensus pattern (20 bp):
TAAAAAAATAAAAAAATAGA
Found at i:7079687 original size:51 final size:49
Alignment explanation
Indices: 7079609--7079797 Score: 131
Period size: 51 Copynumber: 3.9 Consensus size: 49
7079599 GATAATATTA
* * * *
7079609 GTAGCTTTAATCTACTCCGCTGTAACTTTTGGAAGTTAAGATTTATAACTC
1 GTAGCTTTAATCTGCTCCACTGCAACTTATGGAA-TTAAGATTT-TAACTC
* *
7079660 GTAGCTTTAATCTGTTCCACTGCAACTTCATGG-ATATAAGA--TT--CGC
1 GTAGCTTTAATCTGCTCCACTGCAACTT-ATGGAAT-TAAGATTTTAACTC
* * * * * *
7079706 -TATCTTCAATCTGCTCCATTGTAACTTCA-GGAAATAAGATTTGTAACTT
1 GTAGCTTTAATCTGCTCCACTGCAACTT-ATGGAATTAAGATTT-TAACTC
* * *
7079755 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATT
1 GTAGCTTTAATCTGCTCCACTGCAACTT-ATGGAATTAAGATT
7079798 CTCTATATTC
Statistics
Matches: 109, Mismatches: 19, Indels: 20
0.74 0.13 0.14
Matches are distributed among these distances:
44 7 0.06
45 25 0.23
46 3 0.03
47 1 0.01
48 1 0.01
49 2 0.02
50 25 0.23
51 42 0.39
52 3 0.03
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.37
Consensus pattern (49 bp):
GTAGCTTTAATCTGCTCCACTGCAACTTATGGAATTAAGATTTTAACTC
Found at i:7079732 original size:45 final size:45
Alignment explanation
Indices: 7079668--7079917 Score: 198
Period size: 45 Copynumber: 5.5 Consensus size: 45
7079658 TCGTAGCTTT
* * *
7079668 AATCTGTTCCACTGCAACTTCATGGATATAAGATTCGCTATCTTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * * *
7079713 AATCTGCTCCATTGTAACTTCA-GGAAATAAGATTTGTAACTTGTAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCG---C---TATCTTC
* * *
7079763 AATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCTCTATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * * * * *
7079808 AATTTGCTCCACTGCAACTTTAGGGAGATAAAATTTG-TAGCTTT
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
* * * * * *
7079852 AATATGTTCCACTGCAACTTCAGGGAGATAAGATTCACCATATTC
1 AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
* *
7079897 AATCTACTCCACTGTAACTTC
1 AATCTGCTCCACTGCAACTTC
7079918 TAGGAGATAA
Statistics
Matches: 158, Mismatches: 39, Indels: 16
0.74 0.18 0.08
Matches are distributed among these distances:
44 47 0.30
45 73 0.46
47 1 0.01
48 1 0.01
50 24 0.15
51 12 0.08
ACGTcount: A:0.30, C:0.21, G:0.14, T:0.34
Consensus pattern (45 bp):
AATCTGCTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTTC
Found at i:7079745 original size:95 final size:95
Alignment explanation
Indices: 7079617--7079932 Score: 358
Period size: 95 Copynumber: 3.4 Consensus size: 95
7079607 TAGTAGCTTT
* * ** * *
7079617 AATCTACTCCGCTGTAACTTTTGGAAGTTAAGATTTATAACTCGTAGCTTTAATCTGTTCCACTG
1 AATCTGCTCCACTGTAACTTCAGG-AGATAAGATTTATAACTTGTAGCTTTAATCTGTTCCACTG
* * * *
7079682 CAACTTCATGGATATAAGATTCGCTATCTTC
65 CAACTTCAGGGAAATAAGATTCACTATATTC
* * *
7079713 AATCTGCTCCATTGTAACTTCAGGAAATAAGATTTGTAACTTGTAGCTTTAATCTGTTCCACTGC
1 AATCTGCTCCACTGTAACTTCAGGAGATAAGATTTATAACTTGTAGCTTTAATCTGTTCCACTGC
*
7079778 AACTTCAGGGAAATAAGATTCTCTATATTC
66 AACTTCAGGGAAATAAGATTCACTATATTC
* * * *
7079808 AATTTGCTCCACTGCAACTTTAGGGAGATAA-A---AT---TTGTAGCTTTAATATGTTCCACTG
1 AATCTGCTCCACTGTAACTTCA-GGAGATAAGATTTATAACTTGTAGCTTTAATCTGTTCCACTG
* *
7079866 CAACTTCAGGGAGATAAGATTCACCATATTC
65 CAACTTCAGGGAAATAAGATTCACTATATTC
* *
7079897 AATCTACTCCACTGTAACTTCTAGGAGATAAAATTT
1 AATCTGCTCCACTGTAACTTC-AGGAGATAAGATTT
7079933 GTGGCTTTAA
Statistics
Matches: 187, Mismatches: 27, Indels: 15
0.82 0.12 0.07
Matches are distributed among these distances:
89 76 0.41
90 2 0.01
92 1 0.01
95 82 0.44
96 26 0.14
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (95 bp):
AATCTGCTCCACTGTAACTTCAGGAGATAAGATTTATAACTTGTAGCTTTAATCTGTTCCACTGC
AACTTCAGGGAAATAAGATTCACTATATTC
Found at i:7079883 original size:89 final size:88
Alignment explanation
Indices: 7079660--7079962 Score: 354
Period size: 89 Copynumber: 3.3 Consensus size: 88
7079650 TTTATAACTC
* * * * *
7079660 GTAGCTTTAATCTGTTCCACTGCAACTTCATGGATATAAGATTCGCTATCTTCAATCTGCTCCAT
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATATTCAATCTGCTCCAC
* * *
7079725 TGTAACTTCAGGAAATAAGATTTGTAACTT
66 TGTAACTTTAGGAGAT-A-A-----AATTT
* *
7079755 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCTCTATATTCAATTTGCTCCAC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATATTCAATCTGCTCCAC
*
7079820 TGCAACTTTAGGGAGATAAAATTT
66 TGTAACTTTA-GGAGATAAAATTT
* * * *
7079844 GTAGCTTTAATATGTTCCACTGCAACTTCAGGGAGATAAGATTCACCATATTCAATCTACTCCAC
1 GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATATTCAATCTGCTCCAC
7079909 TGTAACTTCTAGGAGATAAAATTT
66 TGTAACTT-TAGGAGATAAAATTT
* ** *
7079933 GTGGCTTTAATCTACTCCACTGTAACTTCA
1 GTAGCTTTAATCTGTTCCACTGCAACTTCA
7079963 CGGCGTCATT
Statistics
Matches: 184, Mismatches: 22, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
89 108 0.59
90 2 0.01
94 1 0.01
95 68 0.37
96 5 0.03
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (88 bp):
GTAGCTTTAATCTGTTCCACTGCAACTTCAGGGAAATAAGATTCACTATATTCAATCTGCTCCAC
TGTAACTTTAGGAGATAAAATTT
Found at i:7079955 original size:44 final size:45
Alignment explanation
Indices: 7079753--7079961 Score: 169
Period size: 45 Copynumber: 4.7 Consensus size: 45
7079743 GATTTGTAAC
** * *
7079753 TTGTAGCTTTAATCTGTTCCACTGCAACTTC-AGGGAAATAAGAT
1 TTGTAGCTTTAATCTACTCCACTGCAACTTCTAGGGAGATAAAAT
* ** * * *
7079797 TCTCTATATTCAATTTGCTCCACTGCAACTT-TAGGGAGATAAAAT
1 T-TGTAGCTTTAATCTACTCCACTGCAACTTCTAGGGAGATAAAAT
* ** *
7079842 TTGTAGCTTTAATATGTTCCACTGCAACTTC-AGGGAGATAAGA-
1 TTGTAGCTTTAATCTACTCCACTGCAACTTCTAGGGAGATAAAAT
* * *
7079885 TT-CACCATATTCAATCTACTCCACTGTAACTTCTA-GGAGATAAAAT
1 TTGTAGC-T-TT-AATCTACTCCACTGCAACTTCTAGGGAGATAAAAT
* *
7079931 TTGTGGCTTTAATCTACTCCACTGTAACTTC
1 TTGTAGCTTTAATCTACTCCACTGCAACTTC
7079962 ACGGCGTCAT
Statistics
Matches: 131, Mismatches: 25, Indels: 18
0.75 0.14 0.10
Matches are distributed among these distances:
42 2 0.02
43 3 0.02
44 58 0.44
45 63 0.48
46 4 0.03
47 1 0.01
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.35
Consensus pattern (45 bp):
TTGTAGCTTTAATCTACTCCACTGCAACTTCTAGGGAGATAAAAT
Found at i:7080581 original size:24 final size:24
Alignment explanation
Indices: 7080537--7080595 Score: 75
Period size: 24 Copynumber: 2.4 Consensus size: 24
7080527 ATTTAATGTT
*
7080537 ATTTACTTGTTTTATTTATTTATTC
1 ATTTA-TTGTTTTATTTATTTAGTC
7080562 ATTTATT-TTTTATGTTATTTAGTC
1 ATTTATTGTTTTAT-TTATTTAGTC
*
7080586 GTTTATTGTT
1 ATTTATTGTT
7080596 CATATTATTT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
23 6 0.20
24 17 0.57
25 7 0.23
ACGTcount: A:0.19, C:0.05, G:0.08, T:0.68
Consensus pattern (24 bp):
ATTTATTGTTTTATTTATTTAGTC
Found at i:7080603 original size:24 final size:24
Alignment explanation
Indices: 7080552--7080605 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 24
7080542 CTTGTTTTAT
* * * *
7080552 TTATTTATTCATTTATTTTTTATG
1 TTATTTAGTCATTTATTGTTCATA
*
7080576 TTATTTAGTCGTTTATTGTTCATA
1 TTATTTAGTCATTTATTGTTCATA
7080600 TTATTT
1 TTATTT
7080606 GTTTATTACT
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.20, C:0.06, G:0.07, T:0.67
Consensus pattern (24 bp):
TTATTTAGTCATTTATTGTTCATA
Found at i:7080611 original size:20 final size:19
Alignment explanation
Indices: 7080559--7080612 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 19
7080549 TATTTATTTA
7080559 TTCATTTATTT-TTTA-TG
1 TTCATTTATTTGTTTATTG
* *
7080576 TT-ATTTAGTCGTTTATTG
1 TTCATTTATTTGTTTATTG
7080594 TTCATATTATTTGTTTATT
1 TTCAT-TTATTTGTTTATT
7080613 ACTTCTACTT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
16 6 0.21
17 6 0.21
18 4 0.14
19 2 0.07
20 11 0.38
ACGTcount: A:0.19, C:0.06, G:0.09, T:0.67
Consensus pattern (19 bp):
TTCATTTATTTGTTTATTG
Found at i:7080718 original size:14 final size:16
Alignment explanation
Indices: 7080687--7080724 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
7080677 CTGTTACTTA
7080687 TTACTTTTTTATCTAT
1 TTACTTTTTTATCTAT
*
7080703 TTA-TTTTTTGTC-AT
1 TTACTTTTTTATCTAT
7080717 TTACTTTT
1 TTACTTTT
7080725 AAAAATTAGA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
14 5 0.25
15 12 0.60
16 3 0.15
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.71
Consensus pattern (16 bp):
TTACTTTTTTATCTAT
Found at i:7080793 original size:15 final size:15
Alignment explanation
Indices: 7080775--7080815 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
7080765 CGTTATTGGT
*
7080775 ATTATTATTATTATC
1 ATTATTGTTATTATC
* *
7080790 ATTATTGTCATTTTC
1 ATTATTGTTATTATC
7080805 ATTATTGTTAT
1 ATTATTGTTAT
7080816 CATCCTATTA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.27, C:0.07, G:0.05, T:0.61
Consensus pattern (15 bp):
ATTATTGTTATTATC
Found at i:7087980 original size:2 final size:2
Alignment explanation
Indices: 7087973--7088004 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7087963 TCGACTAATA
*
7087973 AT AT AT AT GT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7088005 CATAATTTCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7088370 original size:114 final size:113
Alignment explanation
Indices: 7088203--7088592 Score: 572
Period size: 114 Copynumber: 3.4 Consensus size: 113
7088193 AAAATAAGCA
* * *
7088203 TTAGCGGCGTTTTTGAGAATGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTCCCAAGCTTT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTCTAAGCTTT
*
7088268 CGGGGATTTAGCGGAGTTTCTAAGAAAGCGCCGCTAATGCTCAGGGCT
66 CGGGGATTTAGCGGAGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
* *
7088316 TTAGCGGCGTTTTTG-GAAAAACGCCGCAAAAAAACCTAAGCCCAACGACGTCGTTTTCTGAGCT
1 TTAGCGGCGTTTTTGAG-AAAGCGCCGC-AAAAAACCTAAGCCCAACGACGTCGTTTTCTAAGCT
*
7088380 TTCGGGGATTTAGC-GACGTTTATAGGAAAGCGCCGCTAATGCTCAGGGCT
64 TTCGGGGATTTAGCGGA-GTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
* * * *
7088430 TTAGCGGCATTTTCGGGAAAGCGCCGCAAAAAAACCTAAGCCCCACGAC-TCCGTTTTCTAAGCT
1 TTAGCGGCGTTTTTGAGAAAGCGCCGC-AAAAAACCTAAGCCCAACGACGT-CGTTTTCTAAGCT
* *
7088494 TTCGGGGATTTAGCGGCA-TTTTTAAGAAAGCGCAGCTAATGCTCAGGGCT
64 TTCGGGGATTTAGCGG-AGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
*
7088544 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGGCCAACGACG
1 TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACG
7088593 ACACATGGAA
Statistics
Matches: 249, Mismatches: 20, Indels: 15
0.88 0.07 0.05
Matches are distributed among these distances:
112 1 0.00
113 45 0.18
114 200 0.80
115 2 0.01
116 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.26, T:0.23
Consensus pattern (113 bp):
TTAGCGGCGTTTTTGAGAAAGCGCCGCAAAAAACCTAAGCCCAACGACGTCGTTTTCTAAGCTTT
CGGGGATTTAGCGGAGTTTATAAGAAAGCGCCGCTAATGCTCAGGGCT
Found at i:7104936 original size:14 final size:15
Alignment explanation
Indices: 7104897--7104938 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 15
7104887 TGACACCAAG
7104897 ACATCGATGTTGCAAC
1 ACAT-GATGTTGCAAC
*
7104913 ACTATGATGTTGCTAC
1 AC-ATGATGTTGCAAC
7104929 AC-TGATGTTG
1 ACATGATGTTG
7104939 GACAAATTAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 8 0.33
16 14 0.58
17 2 0.08
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.33
Consensus pattern (15 bp):
ACATGATGTTGCAAC
Found at i:7106047 original size:16 final size:16
Alignment explanation
Indices: 7106022--7106067 Score: 56
Period size: 16 Copynumber: 2.9 Consensus size: 16
7106012 TAGTTAATCA
*
7106022 AATACATATTTTATCT
1 AATACTTATTTTATCT
* * *
7106038 AATATTTATTATATTT
1 AATACTTATTTTATCT
7106054 AATACTTATTTTAT
1 AATACTTATTTTAT
7106068 ATTAATTTTT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.37, C:0.07, G:0.00, T:0.57
Consensus pattern (16 bp):
AATACTTATTTTATCT
Found at i:7108928 original size:34 final size:34
Alignment explanation
Indices: 7108885--7108955 Score: 142
Period size: 34 Copynumber: 2.1 Consensus size: 34
7108875 GCGAAGTCGA
7108885 AATCTTTCCACCACCTGAAACAAAACCCATAACT
1 AATCTTTCCACCACCTGAAACAAAACCCATAACT
7108919 AATCTTTCCACCACCTGAAACAAAACCCATAACT
1 AATCTTTCCACCACCTGAAACAAAACCCATAACT
7108953 AAT
1 AAT
7108956 GAATTACTCA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.42, C:0.34, G:0.03, T:0.21
Consensus pattern (34 bp):
AATCTTTCCACCACCTGAAACAAAACCCATAACT
Found at i:7115583 original size:31 final size:31
Alignment explanation
Indices: 7115548--7115619 Score: 99
Period size: 31 Copynumber: 2.3 Consensus size: 31
7115538 AGTGATAAAC
* *
7115548 AGTTCCATAACTTAAATAAAAACTTTTGAAT
1 AGTTCAATAACTTAAATAAAAACTTTCGAAT
* *
7115579 AGTTCAAAAACTTAAATGAAAACTTTCGAAT
1 AGTTCAATAACTTAAATAAAAACTTTCGAAT
*
7115610 AATTCAATAA
1 AGTTCAATAA
7115620 TTATATTATA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (31 bp):
AGTTCAATAACTTAAATAAAAACTTTCGAAT
Found at i:7118866 original size:14 final size:14
Alignment explanation
Indices: 7118820--7118860 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
7118810 AATTTACAGA
7118820 AAAATAAAATAAAA-
1 AAAAT-AAATAAAAC
7118834 AATAA-AAATAAAAC
1 AA-AATAAATAAAAC
7118848 AAAATAAATAAAA
1 AAAATAAATAAAA
7118861 TGAAATTCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
13 10 0.42
14 12 0.50
15 2 0.08
ACGTcount: A:0.83, C:0.02, G:0.00, T:0.15
Consensus pattern (14 bp):
AAAATAAATAAAAC
Found at i:7122066 original size:21 final size:23
Alignment explanation
Indices: 7122024--7122066 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 23
7122014 TTATCATTGT
**
7122024 TATAAAAAATATTTAATTATAAC
1 TATAAAAAATATTTAAAAATAAC
7122047 TATAAAAAA-A-TTAAAAATAA
1 TATAAAAAATATTTAAAAATAA
7122067 TTATCATTTT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
21 8 0.44
22 1 0.06
23 9 0.50
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (23 bp):
TATAAAAAATATTTAAAAATAAC
Found at i:7122332 original size:21 final size:21
Alignment explanation
Indices: 7122308--7122360 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7122298 CATTGTTTCT
*
7122308 AATCTCACCGCTACAGTACCC
1 AATCTCACCGCTACAGTAACC
* *
7122329 AATCTCACCGCTATAGTAACT
1 AATCTCACCGCTACAGTAACC
7122350 AATCTCACCGC
1 AATCTCACCGC
7122361 CACCGCTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.38, G:0.09, T:0.23
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:7125505 original size:20 final size:18
Alignment explanation
Indices: 7125488--7125536 Score: 66
Period size: 18 Copynumber: 2.7 Consensus size: 18
7125478 ATAGGAAATG
7125488 GAGAAAAGAAAAAGGAAA
1 GAGAAAAGAAAAAGGAAA
7125506 GA-AATAAGAGAAAAGGAAA
1 GAGAA-AAGA-AAAAGGAAA
7125525 -AGAAAAGAAAAA
1 GAGAAAAGAAAAA
7125537 AAGTGTTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
17 6 0.21
18 11 0.39
19 11 0.39
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.02
Consensus pattern (18 bp):
GAGAAAAGAAAAAGGAAA
Found at i:7125521 original size:19 final size:19
Alignment explanation
Indices: 7125493--7125529 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7125483 AAATGGAGAA
7125493 AAGAAAAAGG-AAAGAAAT
1 AAGAAAAAGGAAAAGAAAT
7125511 AAGAGAAAAGGAAAAGAAA
1 AAGA-AAAAGGAAAAGAAA
7125530 AGAAAAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 6 0.35
20 7 0.41
ACGTcount: A:0.73, C:0.00, G:0.24, T:0.03
Consensus pattern (19 bp):
AAGAAAAAGGAAAAGAAAT
Found at i:7125579 original size:20 final size:20
Alignment explanation
Indices: 7125542--7125579 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
7125532 AAAAAAAGTG
*
7125542 TTTATAATATTATAGTTTCT
1 TTTATAATATAATAGTTTCT
7125562 TTTACTAATATAAT-GTTT
1 TTTA-TAATATAATAGTTT
7125580 TTATGCAGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 8 0.50
21 8 0.50
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
TTTATAATATAATAGTTTCT
Found at i:7127083 original size:16 final size:15
Alignment explanation
Indices: 7127057--7127086 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7127047 AATTAATATT
7127057 TAATATAATAATAAA
1 TAATATAATAATAAA
7127072 TAATACTAATAATAA
1 TAATA-TAATAATAA
7127087 TACAGTAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.33
Consensus pattern (15 bp):
TAATATAATAATAAA
Found at i:7128536 original size:41 final size:42
Alignment explanation
Indices: 7128483--7128647 Score: 151
Period size: 43 Copynumber: 4.0 Consensus size: 42
7128473 AACTTCAGGG
7128483 AGATAAGACTGGATG-TAA-CCTGCTCT-CTGCAACCTTAGAA
1 AGATAAGACTGGATGTTAATCC-GCTCTACTGCAACCTTAGAA
* **
7128523 AGATAAGATCTGGATGTTAATCCGCTCCACTGCAA-CTTCAGGG
1 AGATAAGA-CTGGATGTTAATCCGCTCTACTGCAACCTT-AGAA
*** ** * * *
7128566 AGATAAGACTGGAT-ACGATCTACTCTACTACAGCCTCAGAA
1 AGATAAGACTGGATGTTAATCCGCTCTACTGCAACCTTAGAA
*
7128607 AGATAAGATCTGGATGTTAATCCGCTCTACTGCAACTTTAG
1 AGATAAGA-CTGGATGTTAATCCGCTCTACTGCAACCTTAG
7128648 GTAGATAGGA
Statistics
Matches: 94, Mismatches: 23, Indels: 13
0.72 0.18 0.10
Matches are distributed among these distances:
40 8 0.09
41 28 0.30
42 24 0.26
43 34 0.36
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (42 bp):
AGATAAGACTGGATGTTAATCCGCTCTACTGCAACCTTAGAA
Found at i:7128639 original size:84 final size:83
Alignment explanation
Indices: 7128463--7128654 Score: 276
Period size: 84 Copynumber: 2.3 Consensus size: 83
7128453 TCTTTAGTCT
** * * *
7128463 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATGTAACCTGCTCTCTGCAACCTTAGAAAGATA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACAACCTACTCTCTACAACCTCAGAAAGATA
7128528 AGATCTGGATGTTAATCC
66 AGATCTGGATGTTAATCC
* * *
7128546 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACGATCTACTCTACTACAGCCTCAGAAAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACAACCTACTCT-CTACAACCTCAGAAAGAT
7128611 AAGATCTGGATGTTAATCC
65 AAGATCTGGATGTTAATCC
* * *
7128630 GCTCTACTGCAACTTTAGGTAGATA
1 GCTCCACTGCAACTTCAGGGAGATA
7128655 GGATTAATTT
Statistics
Matches: 97, Mismatches: 11, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
83 41 0.42
84 56 0.58
ACGTcount: A:0.31, C:0.23, G:0.21, T:0.26
Consensus pattern (83 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACAACCTACTCTCTACAACCTCAGAAAGATA
AGATCTGGATGTTAATCC
Found at i:7128810 original size:129 final size:128
Alignment explanation
Indices: 7128546--7128835 Score: 429
Period size: 129 Copynumber: 2.3 Consensus size: 128
7128536 ATGTTAATCC
*
7128546 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACGATCTACTCTACTACAGCCTCAGAAAGAT
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACGATCTACTCTACTACAACCTCAGAAAGAT
* * * *
7128611 AAGATCTGGATGTTAATCCGCTCTACTGCAACTTTAGGTAGATAGGATTAATTTCTTCTGTCT
66 AAAATCTGGATGTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAATTTCTTCTGTCT
* * *
7128674 GCTCCACTGTAACTTCAGGGAGATAAGACTGGATGCGATCTACTCTACTACAA-CTCCAGAGAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACGATCTACTCTACTACAACCT-CAGAAAGA
* * * * *
7128738 TAAAATTTGTGGTTTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTGATTTTTTCTGTCT
65 TAAAATCTG-GATGTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAATTTCTTCTGTCT
*
7128803 GCTCCACTGCAACTTCAGAGAGATAAGACTGGA
1 GCTCCACTGCAACTTCAGGGAGATAAGACTGGA
7128836 ATTTCACCGG
Statistics
Matches: 145, Mismatches: 15, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
127 2 0.01
128 64 0.44
129 79 0.54
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.29
Consensus pattern (128 bp):
GCTCCACTGCAACTTCAGGGAGATAAGACTGGATACGATCTACTCTACTACAACCTCAGAAAGAT
AAAATCTGGATGTTAATCCGCTCCACTACAACTTTAGGGAGATAGGATTAATTTCTTCTGTCT
Found at i:7134777 original size:16 final size:16
Alignment explanation
Indices: 7134756--7134883 Score: 55
Period size: 16 Copynumber: 8.3 Consensus size: 16
7134746 AGGGTTTCCG
7134756 AATCACATTTCAATTC
1 AATCACATTTCAATTC
7134772 AATCAC-TTTC---TC
1 AATCACATTTCAATTC
7134784 -AT-AC-TTTCAATTC
1 AATCACATTTCAATTC
* *
7134797 AA--ATCATTCCAATTT
1 AATCA-CATTTCAATTC
**
7134812 AATCACCATTT-GGTTC
1 AATCA-CATTTCAATTC
*
7134828 AAT-ACATTTTTCGATTTC
1 AATCACA--TTTC-AATTC
7134846 AAATTCAC-TTTCAATTC
1 -AA-TCACATTTCAATTC
*
7134863 AATCACAATTCAATTC
1 AATCACATTTCAATTC
7134879 AATCA
1 AATCA
7134884 TGATACTCAC
Statistics
Matches: 85, Mismatches: 11, Indels: 32
0.66 0.09 0.25
Matches are distributed among these distances:
10 6 0.07
11 2 0.02
12 2 0.02
13 3 0.04
14 4 0.05
15 18 0.21
16 29 0.34
17 9 0.11
18 7 0.08
19 2 0.02
20 1 0.01
21 2 0.02
ACGTcount: A:0.34, C:0.23, G:0.02, T:0.40
Consensus pattern (16 bp):
AATCACATTTCAATTC
Found at i:7153605 original size:15 final size:16
Alignment explanation
Indices: 7153572--7153602 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7153562 TGTAAAACTA
7153572 ATGTATGATATTTTTT
1 ATGTATGATATTTTTT
*
7153588 ATGTTTGATATTTTT
1 ATGTATGATATTTTT
7153603 ATGCTATGCT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.00, G:0.13, T:0.65
Consensus pattern (16 bp):
ATGTATGATATTTTTT
Found at i:7155513 original size:21 final size:21
Alignment explanation
Indices: 7155467--7155516 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
7155457 CATTATTTCT
*
7155467 AATCTCACTGCTACAGTATCC
1 AATCTCACTGCTACAGTAACC
* *
7155488 CATCTCA-TCGCTACAGTAACG
1 AATCTCACT-GCTACAGTAACC
7155509 AATCTCAC
1 AATCTCAC
7155517 CGTCACCACT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
20 1 0.04
21 22 0.96
ACGTcount: A:0.30, C:0.34, G:0.10, T:0.26
Consensus pattern (21 bp):
AATCTCACTGCTACAGTAACC
Found at i:7157238 original size:7 final size:7
Alignment explanation
Indices: 7157226--7157250 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
7157216 CGCCCTTCTT
7157226 TGCTCTC
1 TGCTCTC
7157233 TGCTCTC
1 TGCTCTC
7157240 TGCTCTC
1 TGCTCTC
7157247 TGCT
1 TGCT
7157251 GATTCTTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.00, C:0.40, G:0.16, T:0.44
Consensus pattern (7 bp):
TGCTCTC
Found at i:7159061 original size:16 final size:16
Alignment explanation
Indices: 7159040--7159093 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
7159030 TCAGGTTTGT
7159040 TCCCGAGCAGCTTAAG
1 TCCCGAGCAGCTTAAG
*
7159056 TCCC--G-AGCTTATCTG
1 TCCCGAGCAGCTTA--AG
7159071 TTCCCGAGCAGCTTAAG
1 -TCCCGAGCAGCTTAAG
7159088 TCCCGA
1 TCCCGA
7159094 AATTCTCGAG
Statistics
Matches: 30, Mismatches: 2, Indels: 12
0.68 0.05 0.27
Matches are distributed among these distances:
13 6 0.20
14 1 0.03
15 1 0.03
16 14 0.47
17 1 0.03
18 1 0.03
19 6 0.20
ACGTcount: A:0.20, C:0.33, G:0.22, T:0.24
Consensus pattern (16 bp):
TCCCGAGCAGCTTAAG
Found at i:7160539 original size:17 final size:17
Alignment explanation
Indices: 7160500--7160554 Score: 64
Period size: 17 Copynumber: 3.4 Consensus size: 17
7160490 CTAATTACAA
*
7160500 ATATTTAATTTTT--AT
1 ATATTAAATTTTTAAAT
7160515 AT-TTAAATTTTTAAAT
1 ATATTAAATTTTTAAAT
7160531 ATATTAAATTTTATAAAT
1 ATATTAAATTTT-TAAAT
7160549 A-ATTAA
1 ATATTAA
7160555 TATTAATNNN
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
14 9 0.26
15 2 0.06
16 4 0.11
17 14 0.40
18 6 0.17
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (17 bp):
ATATTAAATTTTTAAAT
Found at i:7161023 original size:21 final size:21
Alignment explanation
Indices: 7160999--7161051 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
7160989 CATTATTTCT
* *
7160999 AATCTCACTGCTACAGTATCC
1 AATCTCACCGCTACAGTAACC
*
7161020 AATCTCACCGCTACAGTAACT
1 AATCTCACCGCTACAGTAACC
7161041 AATCTCACCGC
1 AATCTCACCGC
7161052 CACTATTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.30, C:0.36, G:0.09, T:0.25
Consensus pattern (21 bp):
AATCTCACCGCTACAGTAACC
Found at i:7163111 original size:58 final size:58
Alignment explanation
Indices: 7163040--7163159 Score: 179
Period size: 58 Copynumber: 2.1 Consensus size: 58
7163030 TGGAGGGGGG
* * * *
7163040 AAAAGTCATTATGCCT-AATATTTATATAGTTTTTGTAAGATCATGAAAGTATAAGGTT
1 AAAAGTCAATATG-CTGAATAATTACATAGTTTTTGTAACATCATGAAAGTATAAGGTT
*
7163098 AAAAGTCAATATGCTGAATAATTACATAGTTTTTGTAACATCATGAAAGTATAGGGTT
1 AAAAGTCAATATGCTGAATAATTACATAGTTTTTGTAACATCATGAAAGTATAAGGTT
7163156 AAAA
1 AAAA
7163160 ATTTCTTAAA
Statistics
Matches: 56, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 2 0.04
58 54 0.96
ACGTcount: A:0.41, C:0.07, G:0.16, T:0.36
Consensus pattern (58 bp):
AAAAGTCAATATGCTGAATAATTACATAGTTTTTGTAACATCATGAAAGTATAAGGTT
Found at i:7166184 original size:18 final size:17
Alignment explanation
Indices: 7166146--7166186 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
7166136 AACATTTAAT
*
7166146 TAATTTTAAAAATTTTA
1 TAATTTTAAAAAATTTA
7166163 -AATTTTCAAAAAATTTA
1 TAATTTT-AAAAAATTTA
7166180 TAATTTT
1 TAATTTT
7166187 TTTAAAAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 9 0.43
18 6 0.29
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (17 bp):
TAATTTTAAAAAATTTA
Found at i:7166193 original size:19 final size:18
Alignment explanation
Indices: 7166149--7166195 Score: 58
Period size: 19 Copynumber: 2.6 Consensus size: 18
7166139 ATTTAATTAA
7166149 TTTTAAAAATTTTAAATT
1 TTTTAAAAATTTTAAATT
** *
7166167 TTCAAAAAATTTATAATTT
1 TTTTAAAAATTT-TAAATT
7166186 TTTTAAAAAT
1 TTTTAAAAAT
7166196 AAAAAACTAT
Statistics
Matches: 23, Mismatches: 5, Indels: 1
0.79 0.17 0.03
Matches are distributed among these distances:
18 10 0.43
19 13 0.57
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTAAAAATTTTAAATT
Found at i:7178451 original size:21 final size:21
Alignment explanation
Indices: 7178403--7178452 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 21
7178393 ATAGAAGTTT
*
7178403 TAAAAAATTATAATTAAATTA
1 TAAAAAATTATAATGAAATTA
*
7178424 TATAAAATTAGTAATGAAATTA
1 TAAAAAATTA-TAATGAAATTA
*
7178446 AAAAAAA
1 TAAAAAA
7178453 ATATTTTGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 9 0.38
22 15 0.62
ACGTcount: A:0.64, C:0.00, G:0.04, T:0.32
Consensus pattern (21 bp):
TAAAAAATTATAATGAAATTA
Found at i:7180574 original size:16 final size:16
Alignment explanation
Indices: 7180553--7180596 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
7180543 TTATTGAAAT
7180553 TATTTAAATAAAAAAA
1 TATTTAAATAAAAAAA
* *
7180569 TATTTAAATTAAAAAT
1 TATTTAAATAAAAAAA
*
7180585 TA-TAAAATAAAA
1 TATTTAAATAAAA
7180597 TATTTCTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 8 0.33
16 16 0.67
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (16 bp):
TATTTAAATAAAAAAA
Found at i:7180584 original size:15 final size:15
Alignment explanation
Indices: 7180553--7180629 Score: 77
Period size: 15 Copynumber: 5.1 Consensus size: 15
7180543 TTATTGAAAT
*
7180553 TATTTAAATAAAAAAA
1 TATTTAAAT-TAAAAA
7180569 TATTTAAATTAAAAA
1 TATTTAAATTAAAAA
* *
7180584 T-TATAAAAT-AAAA
1 TATTTAAATTAAAAA
*
7180597 TATTTCTAAACTAAAAA
1 TA-TT-TAAATTAAAAA
7180614 TATTTAAATTAAAAA
1 TATTTAAATTAAAAA
7180629 T
1 T
7180630 TATAAAATAT
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
13 5 0.10
14 6 0.12
15 18 0.35
16 16 0.31
17 6 0.12
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.36
Consensus pattern (15 bp):
TATTTAAATTAAAAA
Found at i:7180637 original size:15 final size:15
Alignment explanation
Indices: 7180574--7180652 Score: 58
Period size: 15 Copynumber: 5.2 Consensus size: 15
7180564 AAAAATATTT
7180574 AAATTAAAAATTATA
1 AAATTAAAAATTATA
*
7180589 AAA-TAAAATATT-TCT
1 AAATTAAAA-ATTAT-A
* *
7180604 AAACTAAAAA-TATTT
1 AAATTAAAAATTA-TA
7180619 AAATTAAAAATTATA
1 AAATTAAAAATTATA
7180634 AAATATCAAAAATTA-A
1 AAAT-T-AAAAATTATA
7180650 AAA
1 AAA
7180653 AAGAAATATG
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
14 7 0.13
15 25 0.47
16 13 0.25
17 8 0.15
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.32
Consensus pattern (15 bp):
AAATTAAAAATTATA
Found at i:7180660 original size:45 final size:44
Alignment explanation
Indices: 7180556--7180667 Score: 129
Period size: 45 Copynumber: 2.5 Consensus size: 44
7180546 TTGAAATTAT
*
7180556 TTAAATAAAAAAATATTTAAATTAAAAATTATAAAATAAAATATT
1 TTAAA-AAAAAAATATTTAAATTAAAAATTATAAAATAAAATATA
**
7180601 TCTAAACTAAAAATATTTAAATTAAAAATTATAAAATATCAAA-A-A
1 T-TAAAAAAAAAATATTTAAATTAAAAATTATAAAATA--AAATATA
7180646 TTAAAAAAAGAAATATGTTAAA
1 TTAAAAAAA-AAATAT-TTAAA
7180668 AATGCTAATA
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
44 6 0.11
45 38 0.67
46 10 0.18
47 3 0.05
ACGTcount: A:0.63, C:0.03, G:0.02, T:0.32
Consensus pattern (44 bp):
TTAAAAAAAAAATATTTAAATTAAAAATTATAAAATAAAATATA
Found at i:7180818 original size:17 final size:17
Alignment explanation
Indices: 7180793--7180852 Score: 60
Period size: 17 Copynumber: 3.8 Consensus size: 17
7180783 AGACCCCAGC
*
7180793 TCTTTTTTTCTTTTTTT
1 TCTTCTTTTCTTTTTTT
7180810 TCTTCTTTTC---TTTT
1 TCTTCTTTTCTTTTTTT
7180824 TC-TC-TTTCTTTTTTT
1 TCTTCTTTTCTTTTTTT
7180839 T-TCTCTTTTCTTTT
1 TCT-TCTTTTCTTTT
7180853 CTGCTCGGGT
Statistics
Matches: 36, Mismatches: 1, Indels: 12
0.73 0.02 0.24
Matches are distributed among these distances:
12 4 0.11
13 2 0.06
14 6 0.17
15 5 0.14
16 2 0.06
17 17 0.47
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
TCTTCTTTTCTTTTTTT
Found at i:7180829 original size:16 final size:16
Alignment explanation
Indices: 7180792--7180845 Score: 65
Period size: 17 Copynumber: 3.3 Consensus size: 16
7180782 CAGACCCCAG
*
7180792 CTCTTTTTTTCTTTTTT
1 CTCTTCTTTTC-TTTTT
*
7180809 TTCTTCTTTTCTTTTT
1 CTCTTCTTTTCTTTTT
7180825 CTCTTTCTTTT-TTTTT
1 CTC-TTCTTTTCTTTTT
7180841 CTCTT
1 CTCTT
7180846 TTCTTTTCTG
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 2 0.06
16 15 0.45
17 16 0.48
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (16 bp):
CTCTTCTTTTCTTTTT
Found at i:7180853 original size:12 final size:11
Alignment explanation
Indices: 7180797--7180854 Score: 73
Period size: 12 Copynumber: 5.1 Consensus size: 11
7180787 CCCAGCTCTT
*
7180797 TTTTTCTTTTT
1 TTTTTCTTTTC
7180808 TTTCTTCTTTTC
1 TTT-TTCTTTTC
7180820 TTTTTCTCTTTC
1 TTTTTCT-TTTC
7180832 TTTTT-TTTTC
1 TTTTTCTTTTC
7180842 TCTTTTCTTTTC
1 T-TTTTCTTTTC
7180854 T
1 T
7180855 GCTCGGGTGG
Statistics
Matches: 42, Mismatches: 1, Indels: 7
0.84 0.02 0.14
Matches are distributed among these distances:
10 5 0.12
11 12 0.29
12 25 0.60
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:7181138 original size:9 final size:9
Alignment explanation
Indices: 7181124--7181156 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
7181114 TTTAAAAAAA
7181124 TATTTTTTT
1 TATTTTTTT
7181133 TA-TTTTTT
1 TATTTTTTT
7181141 TATTTTTTT
1 TATTTTTTT
*
7181150 TCTTTTT
1 TATTTTT
7181157 CTTCTTTCCC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
8 8 0.36
9 14 0.64
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (9 bp):
TATTTTTTT
Found at i:7181144 original size:17 final size:17
Alignment explanation
Indices: 7181124--7181156 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7181114 TTTAAAAAAA
7181124 TATTTTTTTTATTTTTT
1 TATTTTTTTTATTTTTT
*
7181141 TATTTTTTTTCTTTTT
1 TATTTTTTTTATTTTT
7181157 CTTCTTTCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.03, G:0.00, T:0.88
Consensus pattern (17 bp):
TATTTTTTTTATTTTTT
Found at i:7181283 original size:18 final size:18
Alignment explanation
Indices: 7181257--7181305 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
7181247 CTCTTCCCTG
* *
7181257 TTTCCTCCTCTCTCTTCT
1 TTTCTTCCTCTCTCTTCC
*
7181275 TTTCTTCCTCTTTCTTCC
1 TTTCTTCCTCTCTCTTCC
* *
7181293 TCTCTTCTTCTCT
1 TTTCTTCCTCTCT
7181306 TTTTTTTTTG
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 25 1.00
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (18 bp):
TTTCTTCCTCTCTCTTCC
Found at i:7181290 original size:10 final size:10
Alignment explanation
Indices: 7181257--7181307 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
7181247 CTCTTCCCTG
*
7181257 TTTCCTCCTC
1 TTTCTTCCTC
*
7181267 TCTCTT-CT-
1 TTTCTTCCTC
7181275 TTTCTTCCTC
1 TTTCTTCCTC
7181285 TTTCTTCCTC
1 TTTCTTCCTC
7181295 TCTTCTT-CTC
1 T-TTCTTCCTC
7181305 TTT
1 TTT
7181308 TTTTTTTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
8 5 0.14
9 6 0.17
10 19 0.54
11 5 0.14
ACGTcount: A:0.00, C:0.39, G:0.00, T:0.61
Consensus pattern (10 bp):
TTTCTTCCTC
Found at i:7181612 original size:59 final size:59
Alignment explanation
Indices: 7181534--7181690 Score: 187
Period size: 59 Copynumber: 2.6 Consensus size: 59
7181524 AGGTCCAAAG
* *
7181534 TGTAATTTCTAGAAAGTTTAAGGGTTAAAATG-AAATTTTAGGAAAGTT-TGGAGGTTAAAA-
1 TGTAATTT-TAAAAAGTTTAAGGGTCAAAATGTAAA-TTTAGGAAAGTTAT-GAGG-TAAAAT
* *
7181594 TGTAATTTTAAAAAGTTT-AGGGATGAAAATGTAAATTTAGGGAAGTTATGAGGTAAAAT
1 TGTAATTTTAAAAAGTTTAAGGG-TCAAAATGTAAATTTAGGAAAGTTATGAGGTAAAAT
* *
7181653 TGTAATTTTAAAAAGTTTAGGGGTCAAAATATAAATTT
1 TGTAATTTTAAAAAGTTTAAGGGTCAAAATGTAAATTT
7181691 CAAATTTTTT
Statistics
Matches: 86, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
58 9 0.10
59 62 0.72
60 15 0.17
ACGTcount: A:0.41, C:0.01, G:0.22, T:0.36
Consensus pattern (59 bp):
TGTAATTTTAAAAAGTTTAAGGGTCAAAATGTAAATTTAGGAAAGTTATGAGGTAAAAT
Found at i:7181622 original size:29 final size:28
Alignment explanation
Indices: 7181534--7181674 Score: 124
Period size: 30 Copynumber: 4.8 Consensus size: 28
7181524 AGGTCCAAAG
7181534 TGTAATTTCTAGAAAGTTTAAGGGTTAAAA
1 TGTAATTT-TAGAAAGTTT-AGGGTTAAAA
* *
7181564 TGAAATTTTAGGAAAGTTTGGAGGTTAAAA
1 TGTAATTTTA-GAAAGTTTAG-GGTTAAAA
* *
7181594 TGTAATTTTAAAAAGTTTAGGGATGAAAA
1 TGTAATTTTAGAAAGTTTAGGG-TTAAAA
* *
7181623 TGTAAATTTAGGGAAG-TTATGAGG-TAAAA
1 TGTAATTTTA-GAAAGTTTA-G-GGTTAAAA
*
7181652 TTGTAATTTTAAAAAGTTTAGGG
1 -TGTAATTTTAGAAAGTTTAGGG
7181675 GTCAAAATAT
Statistics
Matches: 90, Mismatches: 13, Indels: 18
0.74 0.11 0.15
Matches are distributed among these distances:
28 4 0.04
29 36 0.40
30 48 0.53
31 2 0.02
ACGTcount: A:0.40, C:0.01, G:0.23, T:0.35
Consensus pattern (28 bp):
TGTAATTTTAGAAAGTTTAGGGTTAAAA
Found at i:7181690 original size:30 final size:29
Alignment explanation
Indices: 7181537--7181690 Score: 102
Period size: 30 Copynumber: 5.2 Consensus size: 29
7181527 TCCAAAGTGT
* *
7181537 AATTTCTAGAAAGTTTAAGGGTTAAAATGA
1 AATTT-TAGAAAGTTTAGGGGTTAAAATTA
7181567 AATTTTAGGAAAGTTT-GGAGGTTAAAATGT-
1 AATTTTA-GAAAGTTTAGG-GGTTAAAAT-TA
* * *
7181597 AATTTTAAAAAGTTTAGGGATGAAAATGTA
1 AATTTTAGAAAGTTTAGGGGTTAAAAT-TA
* * *
7181627 AA-TTTAGGGAAG-TTATGAGG-TAAAATTGT
1 AATTTTA-GAAAGTTTA-GGGGTTAAAATT-A
* *
7181656 AATTTTAAAAAGTTTAGGGGTCAAAATATA
1 AATTTTAGAAAGTTTAGGGGTTAAAAT-TA
7181686 AATTT
1 AATTT
7181691 CAAATTTTTT
Statistics
Matches: 96, Mismatches: 16, Indels: 24
0.71 0.12 0.18
Matches are distributed among these distances:
28 1 0.01
29 39 0.41
30 55 0.57
31 1 0.01
ACGTcount: A:0.42, C:0.01, G:0.21, T:0.35
Consensus pattern (29 bp):
AATTTTAGAAAGTTTAGGGGTTAAAATTA
Found at i:7182069 original size:77 final size:76
Alignment explanation
Indices: 7181862--7182334 Score: 528
Period size: 77 Copynumber: 6.1 Consensus size: 76
7181852 TTTTGTTTTT
* * * * *
7181862 ATTG-AAAATAGCTCGGCGTGTGATCCGAATGCACAACTTACCTCTCAG-ATTATGAGTTGATCT
1 ATTGAAAAATACCTCGGCGTGTGACCCGAA-GCTCAACTCACCTCTC-GCATTATGAGTTGATTT
*
7181925 TTGAAAAACAGAA
64 TTGAAAAAAAGAA
* *
7181938 ATTGAAAAACACCTCGGCGTGTGACCC-AAGACTCAACTCACCTCTCGGATTATGAGTTGATTTT
1 ATTGAAAAATACCTCGGCGTGTGACCCGAAG-CTCAACTCACCTCTCGCATTATGAGTTGATTTT
7182002 TGACAAAAGAAGAA
65 TGA-AAAA-AAGAA
* *
7182016 ATTGAAAAATACCTCGGCGTATG-CCCGAAGCTCAACTCACCTCTCGCATTATGAGTTTATTTTT
1 ATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
7182080 GAAAAAAAATAGAA
66 G--AAAAAA-AGAA
*
7182094 ATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTATCGCATTATGAGTTGATGTTT
1 ATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGCATTATGAGTTGA--TTT
* *
7182159 TTGAAAAACATAA
64 TTGAAAAAAAGAA
* * * * *
7182172 ATTG-AAAATACCTCAGCGAGCT-ACCTGAGGCTCAACTGACCTCTCGCATTATGAGTTGATTTT
1 ATTGAAAAATACCTCGGCGTG-TGACCCGAAGCTCAACTCACCTCTCGCATTATGAGTTGA--TT
*
7182235 TTTGAAAAAACATAA
63 TTTGAAAAAA-AGAA
*** * * *
7182250 ATTG-AAAATACCTCAATGTGCGACCCGAGGCTCAACTCACCTCTCGGATTATGAGTTGATTTTT
1 ATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
7182314 GAAAAAAGTAGAA
66 GAAAAAA--AGAA
7182327 ATTGAAAA
1 ATTGAAAA
7182335 TAATTCTTGA
Statistics
Matches: 347, Mismatches: 33, Indels: 32
0.84 0.08 0.08
Matches are distributed among these distances:
75 2 0.01
76 49 0.14
77 126 0.36
78 124 0.36
79 40 0.12
81 6 0.02
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.27
Consensus pattern (76 bp):
ATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGCATTATGAGTTGATTTTT
GAAAAAAAGAA
Found at i:7182146 original size:156 final size:154
Alignment explanation
Indices: 7181862--7182336 Score: 531
Period size: 156 Copynumber: 3.1 Consensus size: 154
7181852 TTTTGTTTTT
* * * * * * *
7181862 ATTGAAAATAGCTCGGCGTGTGATCCGAATGCACAACTTACCTCTCAG-ATTATGAGTTGATCTT
1 ATTGAAAATACCTCGGCGTATG-CCCGAA-GCTCAACTCACCTCTC-GCATTATGAGTTTATTTT
* *
7181926 TG---AAAAACAGAAATTGAAAAACACCTCGGCGTGTGACCC-AAGACTCAACTCACCTCTCGGA
63 TGAAAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAAG-CTCAACTCACCTCTCGGA
7181987 TTATGAGTTGATTTTTGACAAAAGAAGAA
127 TTATGAGTTGATTTTTGA-AAAAGAAGAA
7182016 ATTGAAAAATACCTCGGCGTATGCCCGAAGCTCAACTCACCTCTCGCATTATGAGTTTATTTTTG
1 ATTG-AAAATACCTCGGCGTATGCCCGAAGCTCAACTCACCTCTCGCATTATGAGTTTATTTTTG
* *
7182081 AAAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTATCGCATTA
65 AAAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGGATTA
* *
7182146 TGAGTTGATGTTTTTGAAAAA-CATAA
130 TGAGTTGA--TTTTTGAAAAAGAAGAA
* * * *
7182172 ATTGAAAATACCTCAGCG-A-GCTACCTGAGGCTCAACTGACCTCTCGCATTATGAGTTGATTTT
1 ATTGAAAATACCTCGGCGTATGC--CC-GAAGCTCAACTCACCTCTCGCATTATGAGTT--TATT
* *** * *
7182235 TTTGAAAAAACAT--AAATTG-AAAATACCTCAATGTGCGACCCGAGGCTCAACTCACCTCTCGG
61 TTTGAAAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGG
*
7182297 ATTATGAGTTGATTTTTGAAAAAAGTAGAA
126 ATTATGAGTTGATTTTTG-AAAAAGAAGAA
7182327 ATTGAAAATA
1 ATTGAAAATA
7182337 ATTCTTGAAA
Statistics
Matches: 279, Mismatches: 27, Indels: 29
0.83 0.08 0.09
Matches are distributed among these distances:
152 1 0.00
153 38 0.14
154 15 0.05
155 92 0.33
156 104 0.37
157 7 0.03
158 22 0.08
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.28
Consensus pattern (154 bp):
ATTGAAAATACCTCGGCGTATGCCCGAAGCTCAACTCACCTCTCGCATTATGAGTTTATTTTTGA
AAAAAAATAGAAATTGAAAAATACCTCGGCGTGTGACCCGAAGCTCAACTCACCTCTCGGATTAT
GAGTTGATTTTTGAAAAAGAAGAA
Found at i:7185150 original size:34 final size:34
Alignment explanation
Indices: 7185112--7185179 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
7185102 CTGCCATCGT
*
7185112 GACATTCTTCCTGAGAGTGCGGGTGATTCCATCA
1 GACATTCTTCCTGAGAATGCGGGTGATTCCATCA
7185146 GACATTCTTCCTGAGAATGCGGGTGATTCCATCA
1 GACATTCTTCCTGAGAATGCGGGTGATTCCATCA
7185180 TGTACTTTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (34 bp):
GACATTCTTCCTGAGAATGCGGGTGATTCCATCA
Found at i:7188205 original size:39 final size:39
Alignment explanation
Indices: 7188156--7188310 Score: 168
Period size: 39 Copynumber: 3.8 Consensus size: 39
7188146 ACAGTAATCA
* *
7188156 GTAACGGTAACAGTATTCGACACACAAAGTGCCGAATCGGTAATA
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAA----T-A-G
* *
7188201 GTAACAGTAACAGTATTCGACATACAAAGTGCCGAATTG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATAG
*
7188240 GTAACAGTAATAGTATTCGACACACAAAGTGCCGAATAG
1 GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATAG
* * * *
7188279 GTAACAGTAATAGTAGTCGGCACA-TAAGTGCC
1 GTAACAGTAACAGTATTCGACACACAAAGTGCC
7188311 TGATTAGTAA
Statistics
Matches: 100, Mismatches: 10, Indels: 7
0.85 0.09 0.06
Matches are distributed among these distances:
38 7 0.07
39 58 0.58
41 1 0.01
45 34 0.34
ACGTcount: A:0.38, C:0.19, G:0.22, T:0.21
Consensus pattern (39 bp):
GTAACAGTAACAGTATTCGACACACAAAGTGCCGAATAG
Found at i:7188211 original size:45 final size:44
Alignment explanation
Indices: 7188149--7188293 Score: 174
Period size: 45 Copynumber: 3.3 Consensus size: 44
7188139 CAAGTAAACA
*
7188149 GTAATCAGTAACGGTAACAGTATTCGACACACAAAGTGCCGAATCG
1 GTAAT-AGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT-G
*
7188195 GTAATAGTAACAGTAACAGTATTCGACATACAAAGTGCCGAA--
1 GTAATAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATG
* *
7188237 -T--TGGTAACAGTAATAGTATTCGACACACAAAGTGCCGAATAG
1 GTAATAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT-G
* *
7188279 GTAACAGTAATAGTA
1 GTAATAGTAACAGTA
7188294 GTCGGCACAT
Statistics
Matches: 85, Mismatches: 8, Indels: 13
0.80 0.08 0.12
Matches are distributed among these distances:
39 35 0.41
41 1 0.01
43 1 0.01
45 43 0.51
46 5 0.06
ACGTcount: A:0.40, C:0.17, G:0.21, T:0.22
Consensus pattern (44 bp):
GTAATAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAATG
Found at i:7192065 original size:9 final size:9
Alignment explanation
Indices: 7192053--7192085 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
7192043 TTTCTTATAC
7192053 TTCTTTAGT
1 TTCTTTAGT
7192062 TTCTTTTA-T
1 TTC-TTTAGT
7192071 TTCTTTAGT
1 TTCTTTAGT
7192080 TTCTTT
1 TTCTTT
7192086 TATTTACTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 4 0.18
9 14 0.64
10 4 0.18
ACGTcount: A:0.09, C:0.12, G:0.06, T:0.73
Consensus pattern (9 bp):
TTCTTTAGT
Found at i:7192105 original size:18 final size:18
Alignment explanation
Indices: 7192042--7192099 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
7192032 CTGTTGTTTT
* *
7192042 GTTTCTTATACTTCTTTA
1 GTTTCTTTTATTTCTTTA
7192060 GTTTCTTTTATTTCTTTA
1 GTTTCTTTTATTTCTTTA
7192078 GTTTCTTTTATTTACTTT-
1 GTTTCTTTTATTT-CTTTA
7192096 GTTT
1 GTTT
7192100 TATTTACTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
18 33 0.89
19 4 0.11
ACGTcount: A:0.12, C:0.12, G:0.07, T:0.69
Consensus pattern (18 bp):
GTTTCTTTTATTTCTTTA
Done.