Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 23 of 163
Found at i:7192713 original size:4 final size:4
Alignment explanation
Indices: 7192704--7192729 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
7192694 TTATTATGTC
7192704 TTAA TTAA TTAA TTAA TTAA TTAA TT
1 TTAA TTAA TTAA TTAA TTAA TTAA TT
7192730 TATAATTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (4 bp):
TTAA
Found at i:7192766 original size:32 final size:31
Alignment explanation
Indices: 7192704--7192781 Score: 106
Period size: 32 Copynumber: 2.5 Consensus size: 31
7192694 TTATTATGTC
7192704 TTAATTAAT-TAATTAATTAATTAATTTATAAT
1 TTAA-TAATATAA-TAATTAATTAATTTATAAT
*
7192736 TTCATAATATAATAATTAATATAATTTATAAT
1 TTAATAATATAATAATTAAT-TAATTTATAAT
7192768 TTAATAATA-AATAA
1 TTAATAATATAATAA
7192782 AACCTTAATA
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
31 17 0.40
32 25 0.60
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (31 bp):
TTAATAATATAATAATTAATTAATTTATAAT
Found at i:7203373 original size:41 final size:41
Alignment explanation
Indices: 7203285--7203468 Score: 244
Period size: 41 Copynumber: 4.5 Consensus size: 41
7203275 NNNNNNNNNN
* * * * *
7203285 GGGTTTTTAGCGGGGTCTTTGGAAAAGCGCCGCTAATACT-
1 GGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
* * * *
7203325 GGTGTCTTTAACGGCGTTTTTGAGAAAGCGCCGCTAATGTTG
1 GG-GTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
7203367 GGGTCTTTAGCGGCGTTTTTGAAAAAGCACCGCTAATGCTC
1 GGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
7203408 GGGTCTTTAGCGGTGTTTTTGAAAAAGCGCCGCTAATGCTC
1 GGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
*
7203449 GGGTCTTTAGCGTCGTTTTT
1 GGGTCTTTAGCGGCGTTTTT
7203469 ATAAAAAAAA
Statistics
Matches: 125, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
40 2 0.02
41 121 0.97
42 2 0.02
ACGTcount: A:0.18, C:0.18, G:0.30, T:0.33
Consensus pattern (41 bp):
GGGTCTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
Found at i:7205369 original size:98 final size:99
Alignment explanation
Indices: 7205255--7205451 Score: 387
Period size: 98 Copynumber: 2.0 Consensus size: 99
7205245 ATTTTTTATC
7205255 CTTAAAAGTATATAGTTTAAAGTTTAAATTCAGAAATAAAACATAATATAATATTTATAATAGAA
1 CTTAAAAGTATATAGTTTAAAGTTTAAATTCAGAAATAAAACATAATATAATATTTATAATAGAA
7205320 ATAAATATATTGAAATAC-TTTTTAAAAGTCATG
66 ATAAATATATTGAAATACTTTTTTAAAAGTCATG
7205353 CTTAAAAGTATATAGTTTAAAGTTTAAATTCAGAAATAAAACATAATATAATATTTATAATAGAA
1 CTTAAAAGTATATAGTTTAAAGTTTAAATTCAGAAATAAAACATAATATAATATTTATAATAGAA
7205418 ATAAATATATTGAAATACTTTTTTAAAAGTCATG
66 ATAAATATATTGAAATACTTTTTTAAAAGTCATG
7205452 TTTTTAGTGG
Statistics
Matches: 98, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 83 0.85
99 15 0.15
ACGTcount: A:0.50, C:0.05, G:0.08, T:0.37
Consensus pattern (99 bp):
CTTAAAAGTATATAGTTTAAAGTTTAAATTCAGAAATAAAACATAATATAATATTTATAATAGAA
ATAAATATATTGAAATACTTTTTTAAAAGTCATG
Found at i:7205575 original size:44 final size:43
Alignment explanation
Indices: 7205441--7205641 Score: 187
Period size: 43 Copynumber: 4.7 Consensus size: 43
7205431 AATACTTTTT
* * * * *
7205441 TAAAAGTCATG-TTTTTAGTGGCGTTTGT-GAAAAAGTGGCGC
1 TAAAAGTCATGATCTTTAGCGGCGTTTGTGGAAGAAGCGCCGC
* * *
7205482 TAAAAGTCAT--TCTTTATAGCAGTGTTTGTGGTAGAAGCGCCGC
1 TAAAAGTCATGATC-TT-TAGCGGCGTTTGTGGAAGAAGCGCCGC
* * **
7205525 TAAAAGTCGTGCTCTTTAGCGGCGTTTGTGGAAAGAAGCGTTGC
1 TAAAAGTCATGATCTTTAGCGGCGTTTGTGG-AAGAAGCGCCGC
* * *
7205569 TAAAAGTCATGATCTTTAGCGGTGCTTT-TCGAAGAAGTGCCGC
1 TAAAAGTCATGATCTTTAGCGGCG-TTTGTGGAAGAAGCGCCGC
*
7205612 TAAAATTCATGATCTTTAGCGGCGTTTGTG
1 TAAAAGTCATGATCTTTAGCGGCGTTTGTG
7205642 TTAGAAGCAC
Statistics
Matches: 128, Mismatches: 24, Indels: 14
0.77 0.14 0.08
Matches are distributed among these distances:
40 1 0.01
41 12 0.09
42 13 0.10
43 63 0.49
44 34 0.27
45 5 0.04
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (43 bp):
TAAAAGTCATGATCTTTAGCGGCGTTTGTGGAAGAAGCGCCGC
Found at i:7205862 original size:44 final size:44
Alignment explanation
Indices: 7205814--7205931 Score: 184
Period size: 44 Copynumber: 2.7 Consensus size: 44
7205804 CTGTCTTCAG
* * *
7205814 TCTGTTCCGCTGCAACTTTA-GAGAGATAAGGCTGGTGGCTTTAA
1 TCTGTTTCACTGCAACTTCAGGA-AGATAAGGCTGGTGGCTTTAA
*
7205858 TCTGTTTCATTGCAACTTCAGGAAGATAAGGCTGGTGGCTTTAA
1 TCTGTTTCACTGCAACTTCAGGAAGATAAGGCTGGTGGCTTTAA
7205902 TCTGTTTCACTGCAACTTCAGGAAGATAAG
1 TCTGTTTCACTGCAACTTCAGGAAGATAAG
7205932 ATCTGCCATA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
44 66 0.97
45 2 0.03
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (44 bp):
TCTGTTTCACTGCAACTTCAGGAAGATAAGGCTGGTGGCTTTAA
Found at i:7208172 original size:250 final size:251
Alignment explanation
Indices: 7207731--7208237 Score: 991
Period size: 250 Copynumber: 2.0 Consensus size: 251
7207721 ATAAAAATTC
7207731 CTAAATTTTCGAGAGACAATTTGTTGAGTTTTGCGTAATCCATACTCTATATAAAAATATAGGAG
1 CTAAATTTTCGAGAGACAATTTGTTGAGTTTTGCGTAATCCATACTCTATATAAAAATATAGGAG
7207796 ATCAGACTGTAAGTTGATTTTTTTTTTCTCCAAAAAACTCAATCTTAAACTTTTCTTCCCTCTCT
66 ATCAGACTGTAAGTTGATTTTTTTTTTCTCCAAAAAACTCAATCTTAAACTTTTCTTCCCTCTCT
7207861 TTCGTACACGTAATATAGGAAAGAAAAGTAAAATTAGCATGCATGTCCTTTTTAAATTAATTTTA
131 TTCGTACACGTAATATAGGAAAGAAAAGTAAAATTAGCATGCATGTCCTTTTTAAATTAATTTTA
7207926 AAATAATAAATTATGGATTATAATAAAATAGG-ATGAGAAGATGGATTTTATT-AAA
196 AAATAATAAATTATGGATTATAATAAAATAGGAATGAG-AGATGGATTTTATTAAAA
7207981 CTAAATTTTCGAGAGACAATTTGTTGAGTTTTGCGTAATCCATACTCTATATAAAAATATAGGAG
1 CTAAATTTTCGAGAGACAATTTGTTGAGTTTTGCGTAATCCATACTCTATATAAAAATATAGGAG
7208046 ATCAGACTGTAAGTTGATTTTTTTTTTCTCCAAAAAACTCAATCTTAAACTTTTCTTCCCTCTCT
66 ATCAGACTGTAAGTTGATTTTTTTTTTCTCCAAAAAACTCAATCTTAAACTTTTCTTCCCTCTCT
7208111 TTCGTACACGTAATATAGGAAAGAAAAGTAAAATTAGCATGCATGTCCTTTTTAAATTAATTTTA
131 TTCGTACACGTAATATAGGAAAGAAAAGTAAAATTAGCATGCATGTCCTTTTTAAATTAATTTTA
7208176 AAATAATAAATTATGGATTATAATAAAATAGGAATGAGAGATGGATTTTATTAAAA
196 AAATAATAAATTATGGATTATAATAAAATAGGAATGAGAGATGGATTTTATTAAAA
7208232 CTAAAT
1 CTAAAT
7208238 AAAAATCATT
Statistics
Matches: 255, Mismatches: 0, Indels: 3
0.99 0.00 0.01
Matches are distributed among these distances:
250 241 0.95
251 14 0.05
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (251 bp):
CTAAATTTTCGAGAGACAATTTGTTGAGTTTTGCGTAATCCATACTCTATATAAAAATATAGGAG
ATCAGACTGTAAGTTGATTTTTTTTTTCTCCAAAAAACTCAATCTTAAACTTTTCTTCCCTCTCT
TTCGTACACGTAATATAGGAAAGAAAAGTAAAATTAGCATGCATGTCCTTTTTAAATTAATTTTA
AAATAATAAATTATGGATTATAATAAAATAGGAATGAGAGATGGATTTTATTAAAA
Found at i:7213041 original size:143 final size:142
Alignment explanation
Indices: 7212876--7213503 Score: 706
Period size: 143 Copynumber: 4.4 Consensus size: 142
7212866 CTACAACTTT
* *
7212876 AGGGAAATAAGATTTGCTGTCTTCAGTCTGCTCCACTGCAACTTTAGGAAGATAGGGCTGATGGC
1 AGGGAAATAAGA-TTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGATGGC
* *
7212941 TTCAATCTGCTCCACTGCAACTTCAGTAAGATAAGATCCACCATAATTTGTAGCTTTAATCTGTT
65 TTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAACTTGTAGCTTTAATCTGTT
7213006 CCACTACAACGCC
130 CCACTACAACGCC
* *
7213019 A-GGAATATAAGATCTGCCGTCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCT-AGTG
1 AGGGAA-ATAAGAT-TGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGA-TG
* * * * * *
7213082 GCTTCAATATGCTCCACTGCAACTCCAGGAAGATAAGATTCGCTATAATTTGTAGCTTTAATCTG
63 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAACTTGTAGCTTTAATCTG
* *
7213147 TTCCACTGCAACGTC
128 TTCCACTACAACGCC
* ** * * *
7213162 AGGGAAATAAGATTCGCTATCTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTAGC
1 AGGGAAATAAGATT-GCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGATGGC
* *** *
7213227 TTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCTGTCATAACTTGTAGCTTCAATCTTGT
65 TTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAACTTGTAGCTTTAATC-TGT
* *
7213292 TCCACTACAATGCT
129 TCCACTACAACGCC
* * * * *
7213306 AGGGAAATAAGATT-CATTGTCTTCAGTCTGCTTCGCTGTAACTTCA-GAGAGATAAGGTTGGTG
1 AGGGAAATAAGATTGC--TGTCTTCAGTCTGCTCCACTGCAACTTCAGGA-AGATAAGGCTGATG
* * * * * *
7213369 GCTTTAATCTGCTTCACTGCAACTTTAGAAAGATAAGATCTATCATAACTTGTAGCTTTAATCTG
63 GCTTCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAACTTGTAGCTTTAATCTG
* * **
7213434 TTCCGCTGCAACTTC
128 TTCCACTACAACGCC
* ** * * * *
7213449 AGGGAGATAAGGCTGGTGACTTCAATCTGCTCCATTGCAACTTCAGGAAGATAAG
1 AGGGAAATAAGATTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAG
7213504 ATCTGCCATA
Statistics
Matches: 414, Mismatches: 59, Indels: 25
0.83 0.12 0.05
Matches are distributed among these distances:
142 38 0.09
143 250 0.60
144 126 0.30
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (142 bp):
AGGGAAATAAGATTGCTGTCTTCAGTCTGCTCCACTGCAACTTCAGGAAGATAAGGCTGATGGCT
TCAATCTGCTCCACTGCAACTTCAGGAAGATAAGATCCACCATAACTTGTAGCTTTAATCTGTTC
CACTACAACGCC
Found at i:7213096 original size:44 final size:44
Alignment explanation
Indices: 7213039--7213645 Score: 178
Period size: 44 Copynumber: 12.8 Consensus size: 44
7213029 GATCTGCCGT
* *
7213039 CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTGG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
* * *
7213083 CTTCAATATGCTCCACTGCAACTCCAGGAAGATAAGATTCGCTATAATTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----GC--T-A---GTAG
* * * * ** * *
7213137 CTTTAATCTGTTCCACTGCAACGTCAGGGAAATAAGATTCGCTAT
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAG-TAG
* ** *
7213182 CTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
* *
7213226 CTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCTGTCATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T-A---GTAG
* * * * ** *
7213280 CTTCAATCTTGTTCCACTACAA-TGCTAGGGAAATAAGATTCA-TTG
1 CTTCAATC-TGCTCCACTGCAACTTC-AGGGAGATAAGGCT-AGTAG
* * * * * * * *
7213325 TCTTCAGTCTGCTTCGCTGTAACTTCAGAGAGATAAGGTTGGTGG
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
* * * ** *
7213370 CTTTAATCTGCTTCACTGCAACTTTAGAAAGATAAGATCTATCATAACTTGTAG
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG-----GC-T-A---GTAG
* * * *
7213424 CTTTAATCTGTTCCGCTGCAACTTCAGGGAGATAAGGCTGGT-G
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
* *
7213467 ACTTCAATCTGCTCCATTGCAACTTCAGGAAGATAAGATCTGCCATAACTTGTAG
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAG----G-C-T-A---GTAG
* * ** * ** *
7213522 CTTTAATCTGTTCCACTGCAACGCCAGGGAAATAAGATTTGCT-G
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAG-TAG
* * * * * *
7213566 TCTTTAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGGCTGGTGG
1 -CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
* * * *
7213611 CTTTAATCTGCTTCATTGCAACTTCAGGAAGATAA
1 CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAA
7213646 AATCTGCCAT
Statistics
Matches: 409, Mismatches: 103, Indels: 102
0.67 0.17 0.17
Matches are distributed among these distances:
43 1 0.00
44 163 0.40
45 89 0.22
46 9 0.02
48 7 0.02
49 5 0.01
50 4 0.01
51 1 0.00
54 110 0.27
55 20 0.05
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (44 bp):
CTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGGCTAGTAG
Found at i:7213286 original size:54 final size:50
Alignment explanation
Indices: 7212939--7213645 Score: 157
Period size: 44 Copynumber: 14.7 Consensus size: 50
7212929 AGGGCTGATG
* * ** *
7212939 GCTTCAATCTGCTCCACTGCAACTTCAGTAAGATAAGATCCACCATAATTTGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGAT--GTC-T-ACTTGTA
* * ** * * *
7212993 GCTTTAATCTG-TTCCACTACAACGCCAGGAATATAAGA--TCTGC-CGT-
1 GCTTCAATCTGCTT-CACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
* * * *
7213039 -CTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAG--G-CTA---GTG
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
* * * * *
7213082 GCTTCAATATGCTCCACTGCAACTCCAGGAAGATAAGATTCGCTATAATTTGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGA-T-G-TCT-ACTTGTA
* * *
7213136 GCTTTAATCTG-TTCCACTGCAACGTCAGGGAA-ATAAGAT-TC-GC---TA
1 GCTTCAATCTGCTT-CACTGCAACTTCA-GGAAGATAAGATGTCTACTTGTA
* * * ** * *
7213181 TCTTCAGTCTGCTCCGTTGCAACTTCAGGGAGATAAG--G----CTGGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
7213225 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATCTGTCATAACTTGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGA--TGTC-T-ACTTGTA
* *
7213279 GCTTCAATCTTG-TTCCACTACAA-TGCTAGGGAA-ATAAGAT-TC-A-TTGT-
1 GCTTCAATC-TGCTT-CACTGCAACTTC-A-GGAAGATAAGATGTCTACTTGTA
* * * * *
7213326 -CTTCAGTCTGCTTCGCTGTAACTTCA-GAGAGATAAG--G--T--TGGTG
1 GCTTCAATCTGCTTCACTGCAACTTCAGGA-AGATAAGATGTCTACTTGTA
* * * *
7213369 GCTTTAATCTGCTTCACTGCAACTTTAGAAAGATAAGATCTATCATAACTTGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGA--TGTC-T-ACTTGTA
* * * **
7213423 GCTTTAATCTG-TTCCGCTGCAACTTCAGGGAGATAAG--G-CT-GGTG-A
1 GCTTCAATCTGCTT-CACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
* * *
7213468 -CTTCAATCTGCTCCATTGCAACTTCAGGAAGATAAGATCTGCCATAACTTGTA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGA--TGTC-T-ACTTGTA
* ** *
7213521 GCTTTAATCTG-TTCCACTGCAACGCCAGGGAA-ATAAGAT-T-TGC-TGT-
1 GCTTCAATCTGCTT-CACTGCAACTTCA-GGAAGATAAGATGTCTACTTGTA
* * * * * *
7213567 -CTTTAGTCTGCTTCGCTGCAACTTCAGGGAGATAAG--G----CTGGTG
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
* *
7213610 GCTTTAATCTGCTTCATTGCAACTTCAGGAAGATAA
1 GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAA
7213646 AATCTGCCAT
Statistics
Matches: 480, Mismatches: 97, Indels: 162
0.65 0.13 0.22
Matches are distributed among these distances:
41 2 0.00
42 7 0.01
43 2 0.00
44 162 0.34
45 91 0.19
46 17 0.04
47 5 0.01
48 9 0.02
49 5 0.01
50 4 0.01
51 2 0.00
52 5 0.01
53 8 0.02
54 133 0.28
55 24 0.05
56 4 0.01
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (50 bp):
GCTTCAATCTGCTTCACTGCAACTTCAGGAAGATAAGATGTCTACTTGTA
Found at i:7213514 original size:98 final size:98
Alignment explanation
Indices: 7213339--7213557 Score: 303
Period size: 98 Copynumber: 2.2 Consensus size: 98
7213329 CAGTCTGCTT
* * * * * * *
7213339 CGCTGTAACTTCAGAGAGATAAGGTTGGTGGCTTTAATCTGCTTCACTGCAACTTTAGAAAGATA
1 CGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGCTCCACTGCAACTTCAGAAAGATA
*
7213404 AGATCTATCATAACTTGTAGCTTTAATCTGTTC
66 AGATCTACCATAACTTGTAGCTTTAATCTGTTC
* *
7213437 CGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGCTCCATTGCAACTTCAGGAAGATA
1 CGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGCTCCACTGCAACTTCAGAAAGATA
*
7213502 AGATCTGCCATAACTTGTAGCTTTAATCTGTTC
66 AGATCTACCATAACTTGTAGCTTTAATCTGTTC
* ** *
7213535 CACTGCAACGCCAGGGAAATAAG
1 CGCTGCAACTTCAGGGAGATAAG
7213558 ATTTGCTGTC
Statistics
Matches: 106, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
98 106 1.00
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30
Consensus pattern (98 bp):
CGCTGCAACTTCAGGGAGATAAGGCTGGTGACTTCAATCTGCTCCACTGCAACTTCAGAAAGATA
AGATCTACCATAACTTGTAGCTTTAATCTGTTC
Found at i:7213633 original size:241 final size:242
Alignment explanation
Indices: 7213188--7213650 Score: 723
Period size: 241 Copynumber: 1.9 Consensus size: 242
7213178 CTATCTTCAG
* *
7213188 TCTGCTCCGTTGCAACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTTCACTGCAACTTCAG
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTCCACTGCAACTTCAG
* * *
7213253 GAAGATAAGATCTGTCATAACTTGTAGCTTCAATCTTGTTCCACTACAATGCTAGGGAAATAAGA
66 GAAGATAAGATCTGCCATAACTTGTAGCTTCAATCTTGTTCCACTACAACGCCAGGGAAATAAGA
* * *
7213318 TTCATTGTCTTCAGTCTGCTTCGCTGTAACTTCAGAGAGATAAGGTTGGTGGCTTTAATCTGCTT
131 TTCACTGTCTTCAGTCTGCTTCGCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTTAATCTGCTT
* *
7213383 CACTGCAACTTTAGAAAGATAAGATCTATCATAACTTGTAGCTTTAA
196 CACTGCAACTTCAGAAAGATAAAATCTATCATAACTTGTAGCTTTAA
* *
7213430 TCTGTTCCGCTGCAACTTCAGGGAGATAAGGCTGGT-GACTTCAATCTGCTCCATTGCAACTTCA
1 TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTAG-CTTCAATCTGCTCCACTGCAACTTCA
* *
7213494 GGAAGATAAGATCTGCCATAACTTGTAGCTTTAATC-TGTTCCACTGCAACGCCAGGGAAATAAG
65 GGAAGATAAGATCTGCCATAACTTGTAGCTTCAATCTTGTTCCACTACAACGCCAGGGAAATAAG
** * *
7213558 ATTTGCTGTCTTTAGTCTGCTTCGCTGCAACTTCAGGGAGATAAGGCTGGTGGCTTTAATCTGCT
130 ATTCACTGTCTTCAGTCTGCTTCGCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTTAATCTGCT
* *
7213623 TCATTGCAACTTCAGGAAGATAAAATCT
195 TCACTGCAACTTCAGAAAGATAAAATCT
7213651 GCCATAATGA
Statistics
Matches: 200, Mismatches: 20, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
241 108 0.54
242 92 0.46
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.32
Consensus pattern (242 bp):
TCTGCTCCGCTGCAACTTCAGGGAGATAAGGCTGGTAGCTTCAATCTGCTCCACTGCAACTTCAG
GAAGATAAGATCTGCCATAACTTGTAGCTTCAATCTTGTTCCACTACAACGCCAGGGAAATAAGA
TTCACTGTCTTCAGTCTGCTTCGCTGCAACTTCAGAGAGATAAGGCTGGTGGCTTTAATCTGCTT
CACTGCAACTTCAGAAAGATAAAATCTATCATAACTTGTAGCTTTAA
Found at i:7214531 original size:16 final size:16
Alignment explanation
Indices: 7214479--7214532 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
7214469 TTGGCCTCTC
7214479 CTTTTTCTTTTTC-TTT
1 CTTTTTC-TTTTCATTT
7214495 -TATTTTCTTTT-ATTT
1 CT-TTTTCTTTTCATTT
*
7214510 AATTTTTCTTTTCATTT
1 -CTTTTTCTTTTCATTT
7214527 CTTTTT
1 CTTTTT
7214533 TCGATTTTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 10
0.74 0.02 0.23
Matches are distributed among these distances:
15 8 0.25
16 19 0.59
17 5 0.16
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (16 bp):
CTTTTTCTTTTCATTT
Found at i:7214541 original size:26 final size:26
Alignment explanation
Indices: 7214486--7214546 Score: 67
Period size: 26 Copynumber: 2.4 Consensus size: 26
7214476 CTCCTTTTTC
*
7214486 TTTTTCTTTTATTTTCTTTTATTTAA
1 TTTTTCTTTTATTTTCTTTTATTGAA
7214512 TTTTTCTTTTCA-TTTCTTTT-TTCG-A
1 TTTTTCTTTT-ATTTTCTTTTATT-GAA
7214537 TTTTT-TTTTA
1 TTTTTCTTTTA
7214547 AAAAAAGTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
23 1 0.03
24 4 0.12
25 8 0.25
26 18 0.56
27 1 0.03
ACGTcount: A:0.11, C:0.10, G:0.02, T:0.77
Consensus pattern (26 bp):
TTTTTCTTTTATTTTCTTTTATTGAA
Found at i:7214655 original size:14 final size:15
Alignment explanation
Indices: 7214632--7214664 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
7214622 ATTAACACTT
*
7214632 TTCCAGATAAGG-CC
1 TTCCACATAAGGTCC
7214646 TTCCACATAAGGTCC
1 TTCCACATAAGGTCC
7214661 TTCC
1 TTCC
7214665 CAGTTTGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.24, C:0.33, G:0.15, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGGTCC
Found at i:7224126 original size:22 final size:22
Alignment explanation
Indices: 7224086--7224128 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7224076 TTTTTATAGT
**
7224086 AAAATTAATATATTTTAATTAC
1 AAAATTAATATATGATAATTAC
*
7224108 AAAATTAATTTATGATAATTA
1 AAAATTAATATATGATAATTA
7224129 TTAAGATATT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.44
Consensus pattern (22 bp):
AAAATTAATATATGATAATTAC
Found at i:7224709 original size:18 final size:19
Alignment explanation
Indices: 7224669--7224711 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
7224659 GTTTAAATTC
7224669 TTTTTAATATTTTTTTAGA
1 TTTTTAATATTTTTTTAGA
7224688 -TTTT-ATATATTTTTTA-A
1 TTTTTAATAT-TTTTTTAGA
7224705 TTTTTAA
1 TTTTTAA
7224712 ATAATGAAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 6
0.78 0.00 0.22
Matches are distributed among these distances:
17 5 0.24
18 15 0.71
19 1 0.05
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (19 bp):
TTTTTAATATTTTTTTAGA
Found at i:7225593 original size:14 final size:14
Alignment explanation
Indices: 7225576--7225611 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
7225566 TCTCTTGATT
*
7225576 TCTCTCTTCTCTAC
1 TCTCTCTTCTCTAA
*
7225590 TCTCTTTTCTCTAA
1 TCTCTCTTCTCTAA
7225604 TCTCTCTT
1 TCTCTCTT
7225612 ATTCTTACTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.08, C:0.36, G:0.00, T:0.56
Consensus pattern (14 bp):
TCTCTCTTCTCTAA
Found at i:7227613 original size:8 final size:8
Alignment explanation
Indices: 7227600--7227643 Score: 88
Period size: 8 Copynumber: 5.5 Consensus size: 8
7227590 ACGCAACATT
7227600 CATTTAGA
1 CATTTAGA
7227608 CATTTAGA
1 CATTTAGA
7227616 CATTTAGA
1 CATTTAGA
7227624 CATTTAGA
1 CATTTAGA
7227632 CATTTAGA
1 CATTTAGA
7227640 CATT
1 CATT
7227644 AAGTTGTAGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 36 1.00
ACGTcount: A:0.36, C:0.14, G:0.11, T:0.39
Consensus pattern (8 bp):
CATTTAGA
Found at i:7227875 original size:128 final size:128
Alignment explanation
Indices: 7227644--7227933 Score: 438
Period size: 128 Copynumber: 2.3 Consensus size: 128
7227634 TTTAGACATT
* * * *
7227644 AAGTTGTAGTGGAGCGGATTAAAACCACAGATCTTACCTCTTTGAAATTGCAGTAGAGCAGATCG
1 AAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTACCTCTCTAAAATTGCAGTAGAGCAGATCG
* *
7227709 CATCCAGTCTTATCTCCCTAACAATTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCTTG
66 CATCCAGTCTTATCTCCCTAACAAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTG
7227772 AAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTACCTCTCTAAAATTGCAGTAGAGCAGATCG
1 AAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTACCTCTCTAAAATTGCAGTAGAGCAGATCG
* * * *
7227837 CATCCAGTCTTATCTCCCTAAGC-AGTAGTGGAGTAGACAGATGAAATCAGTCTTATCTCCCTG
66 CATCCAGTCTTATCTCCCTAA-CAAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTG
* ** *
7227900 AAGTTGCAGTGGAGTAGACCAAAACCACAAATCT
1 AAGTTGCAGTGGAGCAGATTAAAACCACAGATCT
7227934 CATCCCATAG
Statistics
Matches: 147, Mismatches: 14, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
128 146 0.99
129 1 0.01
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (128 bp):
AAGTTGCAGTGGAGCAGATTAAAACCACAGATCTTACCTCTCTAAAATTGCAGTAGAGCAGATCG
CATCCAGTCTTATCTCCCTAACAAGTAGTGGAGCAGACAGAAGAAATCAATCCTATCTCCCTG
Found at i:7230420 original size:12 final size:12
Alignment explanation
Indices: 7230405--7230455 Score: 63
Period size: 12 Copynumber: 4.4 Consensus size: 12
7230395 ATTTTGTACT
7230405 ATATTTACCTAA
1 ATATTTACCTAA
7230417 ATATTTACCTAA
1 ATATTTACCTAA
*
7230429 AT-TTTA--TACT
1 ATATTTACCTA-A
7230439 ATATTTACCTAA
1 ATATTTACCTAA
7230451 ATATT
1 ATATT
7230456 AATTATAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
9 2 0.06
10 2 0.06
11 8 0.24
12 19 0.58
13 2 0.06
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.47
Consensus pattern (12 bp):
ATATTTACCTAA
Found at i:7234173 original size:71 final size:72
Alignment explanation
Indices: 7234062--7234194 Score: 180
Period size: 71 Copynumber: 1.9 Consensus size: 72
7234052 CAATCAACGC
** * *
7234062 TGGGCGCAAAACATTGTCGGTTTATCTGACAAGTGTAGGGCACATCTATCA-TCAGT-TTATCCA
1 TGGGCGCAAAACATTGTCGGAGTATCCGACAAGTGCAGGGCACATCTAT-AGTCAGTATTATCCA
7234125 ACTAGCTT
65 ACTAGCTT
* * *
7234133 TGGGCGTAAAACATTGTTGGAGTATCCGACCAGTGCAGGGCACATCTATAGTCAGTATTATC
1 TGGGCGCAAAACATTGTCGGAGTATCCGACAAGTGCAGGGCACATCTATAGTCAGTATTATC
7234195 GACCAACAAG
Statistics
Matches: 53, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
70 1 0.02
71 47 0.89
72 5 0.09
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.29
Consensus pattern (72 bp):
TGGGCGCAAAACATTGTCGGAGTATCCGACAAGTGCAGGGCACATCTATAGTCAGTATTATCCAA
CTAGCTT
Found at i:7237585 original size:18 final size:17
Alignment explanation
Indices: 7237557--7237591 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7237547 ATTATTAAGA
*
7237557 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7237574 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7237592 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7237694 original size:61 final size:61
Alignment explanation
Indices: 7237509--7237696 Score: 199
Period size: 61 Copynumber: 3.1 Consensus size: 61
7237499 TTATAGTATC
7237509 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
* * ** * * * * * * *
7237570 ATATATTTTAATTAAAATATATTTA-ATAATAAT-TATG-TTAAATT-A-TATTTTA-TAGTATC
1 ATATATTATGATTTTAGTAAATTCATATAAGAATAT-TGATT--ATTAAGAATTTTATTA-AATT
7237629 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
1 ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
7237690 ATATATT
1 ATATATT
7237697 TTAATTAAAA
Statistics
Matches: 95, Mismatches: 22, Indels: 20
0.69 0.16 0.15
Matches are distributed among these distances:
58 2 0.02
59 32 0.34
60 20 0.21
61 39 0.41
62 2 0.02
ACGTcount: A:0.43, C:0.02, G:0.06, T:0.49
Consensus pattern (61 bp):
ATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTAAGAATTTTATTAAATT
Found at i:7237702 original size:120 final size:120
Alignment explanation
Indices: 7237489--7237731 Score: 486
Period size: 120 Copynumber: 2.0 Consensus size: 120
7237479 NNNNNNNNNN
7237489 AAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTA
1 AAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTA
7237554 AGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 AGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
7237609 AAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTA
1 AAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTA
7237674 AGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
66 AGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
7237729 AAA
1 AAA
7237732 ATATGATTAA
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
120 123 1.00
ACGTcount: A:0.44, C:0.02, G:0.06, T:0.49
Consensus pattern (120 bp):
AAATTATATTTTATAGTATCATATATTATGATTTTAGTAAATTCATATAAGAATATTGATTATTA
AGAATTTTATTAAATTATATATTTTAATTAAAATATATTTAATAATAATTATGTT
Found at i:7237705 original size:18 final size:17
Alignment explanation
Indices: 7237677--7237711 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
7237667 ATTATTAAGA
*
7237677 ATTTTATTAAATTATAT
1 ATTTTATTAAAATATAT
7237694 ATTTTAATTAAAATATAT
1 ATTTT-ATTAAAATATAT
7237712 TTAATAATAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 5 0.31
18 11 0.69
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
ATTTTATTAAAATATAT
Found at i:7241434 original size:11 final size:11
Alignment explanation
Indices: 7241406--7241456 Score: 77
Period size: 11 Copynumber: 4.6 Consensus size: 11
7241396 AAATAGAGAT
7241406 TTGAGAGGAAA
1 TTGAGAGGAAA
7241417 TTTGAGAGGAAA
1 -TTGAGAGGAAA
*
7241429 TTGAGAGCAAA
1 TTGAGAGGAAA
7241440 TTGAGAGGAAA
1 TTGAGAGGAAA
7241451 TT-AGAG
1 TTGAGAG
7241457 AAAGGATTTA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 4 0.11
11 22 0.59
12 11 0.30
ACGTcount: A:0.43, C:0.02, G:0.33, T:0.22
Consensus pattern (11 bp):
TTGAGAGGAAA
Found at i:7242246 original size:22 final size:22
Alignment explanation
Indices: 7242220--7242262 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7242210 AGATTTCAAT
*
7242220 AAATAAAAAAATATTAATATTA
1 AAATAAAAAAATATAAATATTA
* *
7242242 AAATAATATAATATAAATATT
1 AAATAAAAAAATATAAATATT
7242263 TTTAAAAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (22 bp):
AAATAAAAAAATATAAATATTA
Found at i:7243995 original size:27 final size:27
Alignment explanation
Indices: 7243965--7244030 Score: 114
Period size: 27 Copynumber: 2.4 Consensus size: 27
7243955 CCTGTCTAGT
7243965 AGGCGCCAATGGAGGAGCCTCATGCAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
* *
7243992 AGGCGCCAATGAAGGAGCCTCATGGAG
1 AGGCGCCAATGGAGGAGCCTCATGCAG
7244019 AGGCGCCAATGG
1 AGGCGCCAATGG
7244031 TGTCCTCTGC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.27, C:0.24, G:0.38, T:0.11
Consensus pattern (27 bp):
AGGCGCCAATGGAGGAGCCTCATGCAG
Found at i:7244173 original size:3 final size:3
Alignment explanation
Indices: 7244167--7244199 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7244157 AAGAGAAAGG
*
7244167 AGA AGA AGA AGA AGA A-T AGA AGA AGA AGA AGA A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA A
7244200 AGAAAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
2 1 0.04
3 26 0.96
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.03
Consensus pattern (3 bp):
AGA
Found at i:7244189 original size:14 final size:14
Alignment explanation
Indices: 7244170--7244196 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
7244160 AGAAAGGAGA
7244170 AGAAGAAGAAGAAT
1 AGAAGAAGAAGAAT
7244184 AGAAGAAGAAGAA
1 AGAAGAAGAAGAA
7244197 GAAAGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.67, C:0.00, G:0.30, T:0.04
Consensus pattern (14 bp):
AGAAGAAGAAGAAT
Found at i:7244189 original size:17 final size:16
Alignment explanation
Indices: 7244167--7244203 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 16
7244157 AAGAGAAAGG
7244167 AGAAGAAGAAGAAGAA
1 AGAAGAAGAAGAAGAA
7244183 TAGAAGAAGAAGAAGAA
1 -AGAAGAAGAAGAAGAA
7244200 AGAA
1 AGAA
7244204 AAAAAAAGGT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 4 0.20
17 16 0.80
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.03
Consensus pattern (16 bp):
AGAAGAAGAAGAAGAA
Found at i:7246129 original size:223 final size:223
Alignment explanation
Indices: 7245741--7246184 Score: 825
Period size: 223 Copynumber: 2.0 Consensus size: 223
7245731 TCTGCGATTG
* *
7245741 ACATAGGCGGATGCCTCATACTGCTGCAGTCGTGGGCACTTTACCGGATGCCATTCTTTGCATCC
1 ACATAGGCGGATGCCTCATACTGCTGCAGTCGTGGGCACTTTACCGAATGCCATTCTTGGCATCC
7245806 ATTAGTCATCAATCATATGTATTTCCACTCGTTAATAGGTGATGAATTTTTACTCATTATAATAA
66 ATTAGTCATCAATCATATGTATTTCCACTCGTTAATAGGTGATGAATTTTTACTCATTATAATAA
* *
7245871 TTAGTTGACTTTTTTATAATATATTATTCTAACAATTTGTTTTCGTAAGTGGAGTAGTAATCTGG
131 TTAGTTGACTTTTTTATAATATATTATTCTAACAATTTGTTTTCGTAAGTGGAGTACTAATCCGG
*
7245936 GGATCGGGAGGTCACCGTCGGTTCCGCT
196 GGATCGGGAAGTCACCGTCGGTTCCGCT
7245964 ACATAGGCGGATGCCTCATACTGCTGCAGTCGTGGGCACTTTACCGAATGCCATTCTTGGCATCC
1 ACATAGGCGGATGCCTCATACTGCTGCAGTCGTGGGCACTTTACCGAATGCCATTCTTGGCATCC
7246029 ATTAGTCATCAATCATATGTATTTCCACTCGTTAATAGGTGATGAATTTTTACTCATTATAATAA
66 ATTAGTCATCAATCATATGTATTTCCACTCGTTAATAGGTGATGAATTTTTACTCATTATAATAA
*
7246094 TTAGTTGACTTTTTTATAATATATTATTCTAACAATTTGTTTTCGTAGGTGGAGTACTAATCCGG
131 TTAGTTGACTTTTTTATAATATATTATTCTAACAATTTGTTTTCGTAAGTGGAGTACTAATCCGG
*
7246159 GTATCGGGAAGTCACCGTCGGTTCCG
196 GGATCGGGAAGTCACCGTCGGTTCCG
7246185 ATATATCATC
Statistics
Matches: 214, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
223 214 1.00
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (223 bp):
ACATAGGCGGATGCCTCATACTGCTGCAGTCGTGGGCACTTTACCGAATGCCATTCTTGGCATCC
ATTAGTCATCAATCATATGTATTTCCACTCGTTAATAGGTGATGAATTTTTACTCATTATAATAA
TTAGTTGACTTTTTTATAATATATTATTCTAACAATTTGTTTTCGTAAGTGGAGTACTAATCCGG
GGATCGGGAAGTCACCGTCGGTTCCGCT
Found at i:7246763 original size:6 final size:6
Alignment explanation
Indices: 7246754--7246788 Score: 52
Period size: 6 Copynumber: 5.8 Consensus size: 6
7246744 GCATCATGCA
* *
7246754 CCAGAG CCAGAG CGAGAG CCAGAG CGAGAG CCAGA
1 CCAGAG CCAGAG CCAGAG CCAGAG CCAGAG CCAGA
7246789 ACTACATTCT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.34, C:0.29, G:0.37, T:0.00
Consensus pattern (6 bp):
CCAGAG
Found at i:7246773 original size:12 final size:12
Alignment explanation
Indices: 7246756--7246788 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
7246746 ATCATGCACC
7246756 AGAGCCAGAGCG
1 AGAGCCAGAGCG
7246768 AGAGCCAGAGCG
1 AGAGCCAGAGCG
7246780 AGAGCCAGA
1 AGAGCCAGA
7246789 ACTACATTCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.36, C:0.24, G:0.39, T:0.00
Consensus pattern (12 bp):
AGAGCCAGAGCG
Found at i:7250274 original size:22 final size:21
Alignment explanation
Indices: 7250239--7250283 Score: 63
Period size: 22 Copynumber: 2.1 Consensus size: 21
7250229 TACCTAATTT
* *
7250239 TTTTCTTCTTTTCCTTCGTTC
1 TTTTCTTCTCTTCCTTCCTTC
7250260 TTTTCTTCTGCTTCCTTCCTTC
1 TTTTCTTCT-CTTCCTTCCTTC
7250282 TT
1 TT
7250284 CTTTCTTCCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.00, C:0.31, G:0.04, T:0.64
Consensus pattern (21 bp):
TTTTCTTCTCTTCCTTCCTTC
Found at i:7250292 original size:14 final size:12
Alignment explanation
Indices: 7250241--7250287 Score: 51
Period size: 13 Copynumber: 3.8 Consensus size: 12
7250231 CCTAATTTTT
7250241 TTCTTCTTTTCC
1 TTCTTCTTTTCC
7250253 TTCGTTCTTTT-C
1 TTC-TTCTTTTCC
*
7250265 TTCTGCTTCCTTCC
1 TTCTTCTT--TTCC
7250279 TTCTTCTTT
1 TTCTTCTTT
7250288 CTTCCGTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
11 4 0.14
12 8 0.28
13 9 0.31
14 8 0.28
ACGTcount: A:0.00, C:0.32, G:0.04, T:0.64
Consensus pattern (12 bp):
TTCTTCTTTTCC
Found at i:7250398 original size:27 final size:27
Alignment explanation
Indices: 7250349--7250451 Score: 147
Period size: 27 Copynumber: 3.8 Consensus size: 27
7250339 AAAATCACAG
7250349 CATTGGCGCCTTCCA-ATATGGCACCAC
1 CATTGGCGCCTTCCAGATA-GGCACCAC
7250376 CATTGGCGCC-TCCTAGATAGGCACCAC
1 CATTGGCGCCTTCC-AGATAGGCACCAC
* * *
7250403 TATTGGCGCCTCCCAAATAGGCACCAC
1 CATTGGCGCCTTCCAGATAGGCACCAC
7250430 CATTGGCGCCTTCCAGATAGGC
1 CATTGGCGCCTTCCAGATAGGC
7250452 GCCAATACTA
Statistics
Matches: 67, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
26 3 0.04
27 59 0.88
28 5 0.07
ACGTcount: A:0.22, C:0.36, G:0.21, T:0.20
Consensus pattern (27 bp):
CATTGGCGCCTTCCAGATAGGCACCAC
Found at i:7255842 original size:45 final size:45
Alignment explanation
Indices: 7255760--7255845 Score: 127
Period size: 45 Copynumber: 1.9 Consensus size: 45
7255750 AGATACTCGG
* * * *
7255760 TGGATTCAGCACATAGCAACCACCTTATTAATCAATGATGTCTGA
1 TGGAATCAACACATAGCAACCACCATACTAATCAATGATGTCTGA
*
7255805 TGGAATCAACACATAGCAACCACCATACTAATTAATGATGT
1 TGGAATCAACACATAGCAACCACCATACTAATCAATGATGT
7255846 TCGGTTCACA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 36 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (45 bp):
TGGAATCAACACATAGCAACCACCATACTAATCAATGATGTCTGA
Found at i:7255881 original size:26 final size:26
Alignment explanation
Indices: 7255852--7255932 Score: 71
Period size: 26 Copynumber: 3.2 Consensus size: 26
7255842 ATGTTCGGTT
7255852 CACATAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
* * *
7255878 CACAT-GTGGCCAT-TATCATTCG-A-TA
1 CACATAGTAGCC-TGCA-CA-TAGTACTA
*
7255903 CACGTAGTAGCCTGCACATAGTACTA
1 CACATAGTAGCCTGCACATAGTACTA
7255929 CACA
1 CACA
7255933 CGTGATCATC
Statistics
Matches: 40, Mismatches: 8, Indels: 14
0.65 0.13 0.23
Matches are distributed among these distances:
24 2 0.05
25 16 0.40
26 20 0.50
27 2 0.05
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (26 bp):
CACATAGTAGCCTGCACATAGTACTA
Found at i:7258777 original size:47 final size:48
Alignment explanation
Indices: 7258708--7258800 Score: 125
Period size: 47 Copynumber: 2.0 Consensus size: 48
7258698 TTTACATATT
*
7258708 GATGCCATAGCCCAGCTATGGTCTTACAC-AATAGCACATATCACACC
1 GATGCCATAGCCCAGCTATGGTCTTACACGAAAAGCACATATCACACC
* * * * *
7258755 GATGCCATATCCCGGGTATGGTCTTATACGAAAATCACATATCACA
1 GATGCCATAGCCCAGCTATGGTCTTACACGAAAAGCACATATCACA
7258801 TGTTGCCATG
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
47 25 0.64
48 14 0.36
ACGTcount: A:0.32, C:0.28, G:0.16, T:0.24
Consensus pattern (48 bp):
GATGCCATAGCCCAGCTATGGTCTTACACGAAAAGCACATATCACACC
Found at i:7265528 original size:12 final size:12
Alignment explanation
Indices: 7265513--7265542 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
7265503 AATAATTAAA
7265513 TAAATTAGAAAT
1 TAAATTAGAAAT
*
7265525 TAAATTGGAAAT
1 TAAATTAGAAAT
7265537 TAAATT
1 TAAATT
7265543 CGGATTTTGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.53, C:0.00, G:0.10, T:0.37
Consensus pattern (12 bp):
TAAATTAGAAAT
Found at i:7278067 original size:98 final size:98
Alignment explanation
Indices: 7277890--7278084 Score: 291
Period size: 98 Copynumber: 2.0 Consensus size: 98
7277880 ACAATAAAAA
* * * * *
7277890 TTTAAAAGAATATCCACTTATCCAATATTTAAGAAATCATATCCAATACATTAGGACACGATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGACACAATTCC
* *
7277955 TCTAGAATCCCAAACTCGGAATATTTCCTTTAC
66 TCTAAAATCCCAAACTCGGAATATTTCATTTAC
* *
7277988 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACGTTAGGGCACAATTCC
1 TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGACACAATTCC
* *
7278053 TTTAAAATCTCAAACTCGGAATATTTCATTTA
66 TCTAAAATCCCAAACTCGGAATATTTCATTTA
7278085 TGATTTTTTA
Statistics
Matches: 86, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
98 86 1.00
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.31
Consensus pattern (98 bp):
TTTAAAAGAACATCCACTTATCCAAGATTTAAGAAATCACACCCAATACATTAGGACACAATTCC
TCTAAAATCCCAAACTCGGAATATTTCATTTAC
Found at i:7278399 original size:8 final size:8
Alignment explanation
Indices: 7278379--7278411 Score: 57
Period size: 8 Copynumber: 4.0 Consensus size: 8
7278369 GATGATATAG
7278379 GAATAATAT
1 GAATAA-AT
7278388 GAATAAAT
1 GAATAAAT
7278396 GAATAAAT
1 GAATAAAT
7278404 GAATAAAT
1 GAATAAAT
7278412 AAAATTGATG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 18 0.75
9 6 0.25
ACGTcount: A:0.61, C:0.00, G:0.12, T:0.27
Consensus pattern (8 bp):
GAATAAAT
Found at i:7278909 original size:21 final size:21
Alignment explanation
Indices: 7278867--7278909 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7278857 ATACGTACAT
* *
7278867 ATAAAAATATTTGTTAAAAAA
1 ATAAAAATATATGATAAAAAA
7278888 ATAAAAATATAT-ATAAATAAA
1 ATAAAAATATATGATAAA-AAA
7278909 A
1 A
7278910 ACTAATTCAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.30
Consensus pattern (21 bp):
ATAAAAATATATGATAAAAAA
Found at i:7279291 original size:30 final size:30
Alignment explanation
Indices: 7279222--7279291 Score: 113
Period size: 30 Copynumber: 2.3 Consensus size: 30
7279212 AAATAAAAAA
*
7279222 GCGCGGATCCTGGATCCGGATCGGGTCGAC
1 GCGCGGATCCTGGATCCGGACCGGGTCGAC
*
7279252 GCACGGATCCTGGATCCGGACCGGGTCGAC
1 GCGCGGATCCTGGATCCGGACCGGGTCGAC
*
7279282 GCGCAGATCC
1 GCGCGGATCC
7279292 AAGCTGTCAA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.16, C:0.33, G:0.37, T:0.14
Consensus pattern (30 bp):
GCGCGGATCCTGGATCCGGACCGGGTCGAC
Found at i:7286664 original size:29 final size:29
Alignment explanation
Indices: 7286625--7286680 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
7286615 CCCAAATTCG
7286625 CCCAATCTAAAACAAACCCAACCTAGCAT
1 CCCAATCTAAAACAAACCCAACCTAGCAT
* *
7286654 CCCAATTTAAAACAAAGCCAACCTAGC
1 CCCAATCTAAAACAAACCCAACCTAGC
7286681 TAATTGGTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.45, C:0.36, G:0.05, T:0.14
Consensus pattern (29 bp):
CCCAATCTAAAACAAACCCAACCTAGCAT
Found at i:7293059 original size:76 final size:77
Alignment explanation
Indices: 7292964--7293116 Score: 299
Period size: 76 Copynumber: 2.0 Consensus size: 77
7292954 TTGATAATAA
7292964 AATTCTATTAATTTGAAAAAGAATTGAGAGGATAAAATATTTTAAAAGTAATGAAAATAAAAAAA
1 AATTCTATTAATTTGAAAAAGAATTGAGAGGATAAAATATTTTAAAAGTAATGAAAATAAAAAAA
7293029 AATAGAGACAAT
66 AATAGAGACAAT
7293041 AATTCTATT-ATTTGAAAAAGAATTGAGAGGATAAAATATTTTAAAAGTAATGAAAATAAAAAAA
1 AATTCTATTAATTTGAAAAAGAATTGAGAGGATAAAATATTTTAAAAGTAATGAAAATAAAAAAA
7293105 AATAGAGACAAT
66 AATAGAGACAAT
7293117 CGATGGTAAA
Statistics
Matches: 76, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
76 67 0.88
77 9 0.12
ACGTcount: A:0.57, C:0.03, G:0.13, T:0.27
Consensus pattern (77 bp):
AATTCTATTAATTTGAAAAAGAATTGAGAGGATAAAATATTTTAAAAGTAATGAAAATAAAAAAA
AATAGAGACAAT
Found at i:7297276 original size:43 final size:42
Alignment explanation
Indices: 7297215--7297424 Score: 214
Period size: 43 Copynumber: 4.9 Consensus size: 42
7297205 AAAGCTCATA
* *
7297215 CGATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAACTAT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAA-TAT
7297258 CGATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATC-ATAT
1 CGATGCCAAC-GTCCCAGAC-GTGGTCTTACACGAAATCAATAT
* *
7297299 ACGATGCCAATGTCCCAGACATGGTCTTACACGCAAATCTCAA-AT
1 -CGATGCCAACGTCCCAGACGTGGTCTTACACG-AAA--TCAATAT
*
7297344 CGATGCCAACGTCCCAAACGTGGTCTTACACGAAATCTCAA-AT
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAA--TCAATAT
* * * * *
7297387 TGATGCCAACATCCCAAATGTGGTCTTACACAAAATCA
1 CGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCA
7297425 CAAATCGGAG
Statistics
Matches: 147, Mismatches: 11, Indels: 20
0.83 0.06 0.11
Matches are distributed among these distances:
41 6 0.04
42 30 0.20
43 76 0.52
44 30 0.20
45 4 0.03
46 1 0.01
ACGTcount: A:0.32, C:0.29, G:0.17, T:0.23
Consensus pattern (42 bp):
CGATGCCAACGTCCCAGACGTGGTCTTACACGAAATCAATAT
Found at i:7309651 original size:63 final size:63
Alignment explanation
Indices: 7309543--7309686 Score: 173
Period size: 63 Copynumber: 2.3 Consensus size: 63
7309533 ATATGCAGGA
* ** * * * *
7309543 CCGATTGGTGGTGGGCCCAGGCCCAATGTTGAGTGTCATGCGTATAGGCCACAAAC-CATTGGG
1 CCGAATGGTGGTGGGCCCAGGCCCAATGTTGAAAGCCATGAGTATAGGACACAAACTC-TTGGC
* * *
7309606 CCGAATGGTGGTTGGCCCAGGTCGAATGTTGAAAGCCATGAGTATAGGACACAAACTCTTGGC
1 CCGAATGGTGGTGGGCCCAGGCCCAATGTTGAAAGCCATGAGTATAGGACACAAACTCTTGGC
*
7309669 CCGAATGGTGGAGGGCCC
1 CCGAATGGTGGTGGGCCC
7309687 CATGGTGGAG
Statistics
Matches: 68, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
63 67 0.99
64 1 0.01
ACGTcount: A:0.23, C:0.23, G:0.33, T:0.21
Consensus pattern (63 bp):
CCGAATGGTGGTGGGCCCAGGCCCAATGTTGAAAGCCATGAGTATAGGACACAAACTCTTGGC
Found at i:7310559 original size:15 final size:15
Alignment explanation
Indices: 7310539--7310567 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7310529 TTTCAAGTTA
7310539 AATAAAGTTGCTATT
1 AATAAAGTTGCTATT
7310554 AATAAAGTTGCTAT
1 AATAAAGTTGCTAT
7310568 AAGTGATGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.41, C:0.07, G:0.14, T:0.38
Consensus pattern (15 bp):
AATAAAGTTGCTATT
Found at i:7314344 original size:25 final size:25
Alignment explanation
Indices: 7314315--7314371 Score: 73
Period size: 25 Copynumber: 2.3 Consensus size: 25
7314305 TCTTTTTAAA
7314315 AAAAACAGC-AAAAA-GAAAAGAAAAG
1 AAAAA-AGCAAAAAACGAAAA-AAAAG
*
7314340 AAAAAAGCAAAAAACGCAAAAAAAG
1 AAAAAAGCAAAAAACGAAAAAAAAG
7314365 AAAAAAG
1 AAAAAAG
7314372 AAGGATAGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
24 3 0.10
25 22 0.76
26 4 0.14
ACGTcount: A:0.77, C:0.09, G:0.14, T:0.00
Consensus pattern (25 bp):
AAAAAAGCAAAAAACGAAAAAAAAG
Found at i:7314360 original size:17 final size:17
Alignment explanation
Indices: 7314313--7314370 Score: 57
Period size: 18 Copynumber: 3.4 Consensus size: 17
7314303 ATTCTTTTTA
7314313 AAAAAAACAGC-AAAAAG
1 AAAAAAAC-GCAAAAAAG
*
7314330 AAAAGAAAAG-AAAAAAG
1 AAAA-AAACGCAAAAAAG
*
7314347 CAAAAAACGCAAAAAAAG
1 AAAAAAACGC-AAAAAAG
7314365 AAAAAA
1 AAAAAA
7314371 GAAGGATAGA
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
16 4 0.12
17 14 0.42
18 15 0.45
ACGTcount: A:0.79, C:0.09, G:0.12, T:0.00
Consensus pattern (17 bp):
AAAAAAACGCAAAAAAG
Found at i:7320861 original size:10 final size:10
Alignment explanation
Indices: 7320848--7320882 Score: 52
Period size: 10 Copynumber: 3.3 Consensus size: 10
7320838 CTTTATATGC
7320848 TTTTTAGAATTT
1 TTTTTAGAA--T
7320860 TTTTTAGAAT
1 TTTTTAGAAT
7320870 TTTTTAGAAT
1 TTTTTAGAAT
7320880 TTT
1 TTT
7320883 CTAAAAAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.61
12 9 0.39
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (10 bp):
TTTTTAGAAT
Found at i:7320865 original size:12 final size:12
Alignment explanation
Indices: 7320848--7320882 Score: 56
Period size: 12 Copynumber: 3.1 Consensus size: 12
7320838 CTTTATATGC
7320848 TTTTTAGAATTT
1 TTTTTAGAATTT
7320860 TTTTTAGAA--T
1 TTTTTAGAATTT
7320870 TTTTTAGAATTT
1 TTTTTAGAATTT
7320882 T
1 T
7320883 CTAAAAAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
10 10 0.48
12 11 0.52
ACGTcount: A:0.26, C:0.00, G:0.09, T:0.66
Consensus pattern (12 bp):
TTTTTAGAATTT
Found at i:7321023 original size:9 final size:9
Alignment explanation
Indices: 7321009--7321046 Score: 58
Period size: 9 Copynumber: 4.2 Consensus size: 9
7320999 CACCAATCTG
7321009 TTATTCGAA
1 TTATTCGAA
*
7321018 TTATTCAAA
1 TTATTCGAA
*
7321027 TTATTCGAG
1 TTATTCGAA
7321036 TTATTCGAA
1 TTATTCGAA
7321045 TT
1 TT
7321047 GTAATATTCA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.47
Consensus pattern (9 bp):
TTATTCGAA
Found at i:7325998 original size:16 final size:16
Alignment explanation
Indices: 7325977--7326016 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
7325967 TGTTTGGTTC
7325977 GTTGTAATGGAATAAA
1 GTTGTAATGGAATAAA
*
7325993 GTTGTAATGGAATAGA
1 GTTGTAATGGAATAAA
*
7326009 GCTGTAAT
1 GTTGTAAT
7326017 CAGTAATTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.38, C:0.03, G:0.28, T:0.33
Consensus pattern (16 bp):
GTTGTAATGGAATAAA
Found at i:7326062 original size:11 final size:11
Alignment explanation
Indices: 7326039--7326068 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
7326029 TGTTTGGTTG
7326039 AATAGAA-TGT
1 AATAGAATTGT
7326049 AATAGAATTGT
1 AATAGAATTGT
7326060 AATAGAATT
1 AATAGAATT
7326069 CTTGAGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.37
11 12 0.63
ACGTcount: A:0.50, C:0.00, G:0.17, T:0.33
Consensus pattern (11 bp):
AATAGAATTGT
Found at i:7332591 original size:13 final size:13
Alignment explanation
Indices: 7332573--7332599 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
7332563 CATGTAAAAT
7332573 ACAGTGAATTCAG
1 ACAGTGAATTCAG
7332586 ACAGTGAATTCAG
1 ACAGTGAATTCAG
7332599 A
1 A
7332600 TGTTGGGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.15, G:0.22, T:0.22
Consensus pattern (13 bp):
ACAGTGAATTCAG
Found at i:7335450 original size:15 final size:15
Alignment explanation
Indices: 7335427--7335456 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
7335417 AACAATTTTT
*
7335427 TATAGAATTCTAAAA
1 TATAAAATTCTAAAA
7335442 TATAAAATTCTAAAA
1 TATAAAATTCTAAAA
7335457 AGGTATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.03, T:0.33
Consensus pattern (15 bp):
TATAAAATTCTAAAA
Found at i:7338575 original size:28 final size:28
Alignment explanation
Indices: 7338544--7338639 Score: 68
Period size: 33 Copynumber: 3.2 Consensus size: 28
7338534 CCCTTTCCAG
7338544 TATCAATGTGGGCCTTAGCCCAATACAA
1 TATCAATGTGGGCCTTAGCCCAATACAA
* *
7338572 TATCAGAACAGTGAGGGCCTTAGCCCAATATAA
1 TATC---A-A-TGTGGGCCTTAGCCCAATACAA
* * ** *
7338605 TAACAGTGTGGG-CTTAAGCCCGTTACAG
1 TATCAATGTGGGCCTT-AGCCCAATACAA
7338633 TATCAAT
1 TATCAAT
7338640 ATGGTGCAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 12
0.69 0.15 0.16
Matches are distributed among these distances:
27 3 0.06
28 22 0.43
30 1 0.02
31 1 0.02
32 1 0.02
33 23 0.45
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (28 bp):
TATCAATGTGGGCCTTAGCCCAATACAA
Found at i:7338825 original size:27 final size:27
Alignment explanation
Indices: 7338788--7338852 Score: 89
Period size: 27 Copynumber: 2.4 Consensus size: 27
7338778 AACCGAGCTG
*
7338788 CCAGT-ACAGT-ATATGTGGCATAGCCA
1 CCAGTAACAGTAAT-TGTGGCAGAGCCA
7338814 CCAGTAACAGTAATTGTGGCAGAGCCA
1 CCAGTAACAGTAATTGTGGCAGAGCCA
*
7338841 CCAGAAACAGTA
1 CCAGTAACAGTA
7338853 CTTCCTCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
26 5 0.14
27 28 0.80
28 2 0.06
ACGTcount: A:0.35, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CCAGTAACAGTAATTGTGGCAGAGCCA
Found at i:7339036 original size:25 final size:26
Alignment explanation
Indices: 7338978--7339123 Score: 165
Period size: 26 Copynumber: 5.7 Consensus size: 26
7338968 CCCTTCTGAA
**
7338978 GGTATTTCAGTAATTTTTTCC-TACG-G
1 GGTATTTCAGTAA-TTTACCCAT-CGAG
*
7339004 GGTATTTCAGTAATTTACCCAT-GGG
1 GGTATTTCAGTAATTTACCCATCGAG
*
7339029 GGTATTTC-GATAATTTACCCATTGAG
1 GGTATTTCAG-TAATTTACCCATCGAG
* *
7339055 GGTATTTGAGTAATTTAACCATCGAG
1 GGTATTTCAGTAATTTACCCATCGAG
**
7339081 GGTATTTTGGTAATTTACCCATCGAG
1 GGTATTTCAGTAATTTACCCATCGAG
7339107 GGTATTTCAGTAATTTA
1 GGTATTTCAGTAATTTA
7339124 GGCCCATTAC
Statistics
Matches: 104, Mismatches: 11, Indels: 10
0.83 0.09 0.08
Matches are distributed among these distances:
24 2 0.02
25 26 0.25
26 75 0.72
27 1 0.01
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTATTTCAGTAATTTACCCATCGAG
Found at i:7341357 original size:16 final size:16
Alignment explanation
Indices: 7341336--7341394 Score: 82
Period size: 16 Copynumber: 3.7 Consensus size: 16
7341326 TGAATTACTG
7341336 ATTACAACTCTATTCC
1 ATTACAACTCTATTCC
*
7341352 ATTACAACTCTATTCA
1 ATTACAACTCTATTCC
* *
7341368 ATTACAACCCTATTTC
1 ATTACAACTCTATTCC
*
7341384 ATTACAGCTCT
1 ATTACAACTCT
7341395 TTTACTTTCT
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.32, C:0.29, G:0.02, T:0.37
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:7342324 original size:17 final size:18
Alignment explanation
Indices: 7342292--7342325 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7342282 TAATAATACA
7342292 AATATAAATATATTGAAT
1 AATATAAATATATTGAAT
*
7342310 AATAT-AATTTATTGAA
1 AATATAAATATATTGAA
7342326 ATGTTTTATA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.41
Consensus pattern (18 bp):
AATATAAATATATTGAAT
Found at i:7342352 original size:23 final size:23
Alignment explanation
Indices: 7342325--7342370 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
7342315 AATTTATTGA
7342325 AATGTTTTATAGTATA-AAATATG
1 AATGTTTTA-AGTATATAAATATG
*
7342348 AATGTTTTAATTATATAAATATG
1 AATGTTTTAAGTATATAAATATG
7342371 GGTATTTGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.43, C:0.00, G:0.11, T:0.46
Consensus pattern (23 bp):
AATGTTTTAAGTATATAAATATG
Found at i:7347680 original size:34 final size:35
Alignment explanation
Indices: 7347607--7347688 Score: 89
Period size: 34 Copynumber: 2.4 Consensus size: 35
7347597 TAGTGGGTGT
* *
7347607 TATATATATAATATATAAATGGGAGCTGGTAATATA
1 TATATATAT-ATATATAAACGGGAGCTGGTAATACA
* *
7347643 TATATATATATATATATACGAGG-G-TGGTTATACA
1 TATATATATATATATAAACG-GGAGCTGGTAATACA
7347677 TATAT-TATATAT
1 TATATATATATAT
7347689 GCATGGTTAT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
33 7 0.17
34 13 0.32
35 10 0.24
36 11 0.27
ACGTcount: A:0.41, C:0.04, G:0.15, T:0.40
Consensus pattern (35 bp):
TATATATATATATATAAACGGGAGCTGGTAATACA
Found at i:7352744 original size:19 final size:19
Alignment explanation
Indices: 7352720--7352763 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
7352710 NNNNNNNNNN
*
7352720 CATATCATATCTAGGATTG
1 CATATCATATCTAAGATTG
7352739 CATATCATATCTAAGATTG
1 CATATCATATCTAAGATTG
7352758 CATATC
1 CATATC
7352764 CTCAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.36
Consensus pattern (19 bp):
CATATCATATCTAAGATTG
Found at i:7353172 original size:44 final size:45
Alignment explanation
Indices: 7352967--7353172 Score: 147
Period size: 44 Copynumber: 4.6 Consensus size: 45
7352957 GGAGCTAGTG
** * *
7352967 CTTCAATCTATTCCACTGCAACTGCAGGGAGATAAGA-CTTACAAT
1 CTTCAATCTATTCCACTGCTGC-CCAGGGAGATAAGATCTGACAAT
* * *
7353012 CTTCAATCTATTCCACTGCTGACCAGGGAGATAGGAT-T-ACTGA-
1 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGAC-AAT
* * * * * * *
7353055 CTTCAATGTACTCCACTG-TAACCACAGGGAGGTAAAATC-CACCAT
1 CTTCAATCTATTCCACTGCT-GCC-CAGGGAGATAAGATCTGACAAT
* * * **
7353100 CTTCGATCTACTCCACTACTGCTTAGGGAGATAAGATCTGA-AAT
1 CTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGACAAT
*
7353144 CTTCAATCTATTCCACTGTTGCCCAGGGA
1 CTTCAATCTATTCCACTGCTGCCCAGGGA
7353173 AGTAGAATTA
Statistics
Matches: 122, Mismatches: 30, Indels: 19
0.71 0.18 0.11
Matches are distributed among these distances:
42 1 0.01
43 19 0.16
44 63 0.52
45 38 0.31
46 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (45 bp):
CTTCAATCTATTCCACTGCTGCCCAGGGAGATAAGATCTGACAAT
Found at i:7362126 original size:27 final size:25
Alignment explanation
Indices: 7362067--7362115 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
7362057 ATATAAATAT
*
7362067 GAAAATATTCTTTAAAAAAATATAG
1 GAAAATATTCGTTAAAAAAATATAG
7362092 GAAAATATTCGTTAAAAAAATATA
1 GAAAATATTCGTTAAAAAAATATA
7362116 CATGTACATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.57, C:0.04, G:0.08, T:0.31
Consensus pattern (25 bp):
GAAAATATTCGTTAAAAAAATATAG
Found at i:7362876 original size:19 final size:19
Alignment explanation
Indices: 7362852--7362961 Score: 148
Period size: 19 Copynumber: 5.7 Consensus size: 19
7362842 ATCTCTAAGA
*
7362852 AAGATTATATATCATATCT
1 AAGATTACATATCATATCT
7362871 AAGATTACATATCATATCT
1 AAGATTACATATCATATCT
*
7362890 AAGATTGCATATATCATATCT
1 AAGATT--ACATATCATATCT
*
7362911 AAGATTGCATATCATATCT
1 AAGATTACATATCATATCT
* *
7362930 AGGATTGCATATCATATCT
1 AAGATTACATATCATATCT
*
7362949 AAGATTGCATATC
1 AAGATTACATATC
7362962 CTCAAAAATT
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
19 65 0.78
21 18 0.22
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.37
Consensus pattern (19 bp):
AAGATTACATATCATATCT
Found at i:7362909 original size:40 final size:40
Alignment explanation
Indices: 7362858--7362961 Score: 176
Period size: 40 Copynumber: 2.6 Consensus size: 40
7362848 AAGAAAGATT
*
7362858 ATATATCATATCTAAGATTACATATCATATCTAAGATTGC
1 ATATATCATATCTAAGATTGCATATCATATCTAAGATTGC
*
7362898 ATATATCATATCTAAGATTGCATATCATATCTAGGATTGC
1 ATATATCATATCTAAGATTGCATATCATATCTAAGATTGC
7362938 --ATATCATATCTAAGATTGCATATC
1 ATATATCATATCTAAGATTGCATATC
7362962 CTCAAAAATT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
38 24 0.39
40 38 0.61
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.38
Consensus pattern (40 bp):
ATATATCATATCTAAGATTGCATATCATATCTAAGATTGC
Found at i:7368433 original size:20 final size:20
Alignment explanation
Indices: 7368391--7368430 Score: 64
Period size: 19 Copynumber: 2.0 Consensus size: 20
7368381 ACGTAATTAA
*
7368391 TAAAAAGTATTTTTAAAATT
1 TAAAAAATATTTTTAAAATT
7368411 TAAAAAATA-TTTTAAAATT
1 TAAAAAATATTTTTAAAATT
7368430 T
1 T
7368431 TAACTATAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.45
Consensus pattern (20 bp):
TAAAAAATATTTTTAAAATT
Found at i:7369673 original size:16 final size:16
Alignment explanation
Indices: 7369634--7369673 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
7369624 CGTTTGGTTC
7369634 ACTATAATAGAATAGA
1 ACTATAATAGAATAGA
*
7369650 ACTGTAATAGAATA-A
1 ACTATAATAGAATAGA
7369665 AGCTATAAT
1 A-CTATAAT
7369674 CAGTAATTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 2 0.10
16 19 0.90
ACGTcount: A:0.53, C:0.07, G:0.12, T:0.28
Consensus pattern (16 bp):
ACTATAATAGAATAGA
Found at i:7370621 original size:42 final size:42
Alignment explanation
Indices: 7370562--7370648 Score: 174
Period size: 42 Copynumber: 2.1 Consensus size: 42
7370552 GCTTCGCATC
7370562 CATAGAAATTGTTTCTTTCTTCATGAGTATTTGTAGTAGCTA
1 CATAGAAATTGTTTCTTTCTTCATGAGTATTTGTAGTAGCTA
7370604 CATAGAAATTGTTTCTTTCTTCATGAGTATTTGTAGTAGCTA
1 CATAGAAATTGTTTCTTTCTTCATGAGTATTTGTAGTAGCTA
7370646 CAT
1 CAT
7370649 CCTCAACATC
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.26, C:0.13, G:0.16, T:0.45
Consensus pattern (42 bp):
CATAGAAATTGTTTCTTTCTTCATGAGTATTTGTAGTAGCTA
Found at i:7373586 original size:44 final size:44
Alignment explanation
Indices: 7373472--7373842 Score: 232
Period size: 44 Copynumber: 8.4 Consensus size: 44
7373462 NNNNNNNNNN
* * *** * *
7373472 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTG
1 GTGAAGTAGATCAAAGTAAACAGATCTTGTCTTCATGTATTGG-C
* ** * *
7373517 GTGGAGTAGATTGAAG-AAAGTAGATCTTATCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGTAAA-CAGATCTTGTCTTCATGTATTGGC
* * *** * *
7373561 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTG
1 GTGAAGTAGATCAAAGTAAACAGATCTTGTCTTCATGTATTGG-C
* ** * *
7373606 GTGGAGTAGATTGAAG-AAAGTAGATCTTATCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGTAAA-CAGATCTTGTCTTCATGTATTGGC
* * * *
7373650 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTAGT-G-
1 GTGAAGTAGATCAAAGTAAACAGATCTTGTCT--TCAT-GTATTGGC
* *
7373695 GTGGAGTAGATCGAAG-AAAGCAGATCTTGTCTTCATGTATTGGC
1 GTGAAGTAGATCAAAGTAAA-CAGATCTTGTCTTCATGTATTGGC
* * *** * *
7373739 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTG
1 GTGAAGTAGATCAAAGTAAACAGATCTTGTCTTCATGTATTGG-C
* * * ** *
7373784 GTGGATTAGATC-AAGAAAATGGATCTTGTCTTCATGTATTGGT
1 GTGAAGTAGATCAAAGTAAACAGATCTTGTCTTCATGTATTGGC
7373827 GTGAAGTAGATCAAAG
1 GTGAAGTAGATCAAAG
7373843 AGGAAAGCTG
Statistics
Matches: 238, Mismatches: 74, Indels: 29
0.70 0.22 0.09
Matches are distributed among these distances:
42 3 0.01
43 14 0.06
44 114 0.48
45 100 0.42
46 4 0.02
47 3 0.01
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (44 bp):
GTGAAGTAGATCAAAGTAAACAGATCTTGTCTTCATGTATTGGC
Found at i:7373623 original size:89 final size:89
Alignment explanation
Indices: 7373472--7373842 Score: 645
Period size: 89 Copynumber: 4.2 Consensus size: 89
7373462 NNNNNNNNNN
7373472 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
1 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
7373537 TAGATCTTATCTTCATGTATTGGC
66 TAGATCTTATCTTCATGTATTGGC
7373561 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
1 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
7373626 TAGATCTTATCTTCATGTATTGGC
66 TAGATCTTATCTTCATGTATTGGC
* *
7373650 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTAGTGGTGGAGTAGATCGAAGAAAG
1 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
* *
7373715 CAGATCTTGTCTTCATGTATTGGC
66 TAGATCTTATCTTCATGTATTGGC
* * *
7373739 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGATTAGA-TCAAGAAAA
1 GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
* * *
7373803 TGGATCTTGTCTTCATGTATTGGT
66 TAGATCTTATCTTCATGTATTGGC
7373827 GTGAAGTAGATCAAAG
1 GTGAAGTAGATCAAAG
7373843 AGGAAAGCTG
Statistics
Matches: 270, Mismatches: 12, Indels: 1
0.95 0.04 0.00
Matches are distributed among these distances:
88 43 0.16
89 227 0.84
ACGTcount: A:0.30, C:0.16, G:0.25, T:0.30
Consensus pattern (89 bp):
GTGAAGTAGATCAAAGTCAACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATTGAAGAAAG
TAGATCTTATCTTCATGTATTGGC
Found at i:7374275 original size:51 final size:51
Alignment explanation
Indices: 7374199--7374300 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
7374189 TGTAATAAGC
7374199 CCAATTGCCCGGGCCCGCATCAGAAAACCAAATACAACAAACGGGCCTACA
1 CCAATTGCCCGGGCCCGCATCAGAAAACCAAATACAACAAACGGGCCTACA
*
7374250 CCAATTTCCCGGGCCCGCATCAGAAAACCAAATACAACAAACGGGCCTACA
1 CCAATTGCCCGGGCCCGCATCAGAAAACCAAATACAACAAACGGGCCTACA
7374301 TGGCCCAAAA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.37, C:0.35, G:0.17, T:0.11
Consensus pattern (51 bp):
CCAATTGCCCGGGCCCGCATCAGAAAACCAAATACAACAAACGGGCCTACA
Found at i:7377690 original size:19 final size:20
Alignment explanation
Indices: 7377639--7377691 Score: 58
Period size: 19 Copynumber: 2.7 Consensus size: 20
7377629 CACTTTCTAT
*
7377639 ATTTT-ATAATATTTCAAATA
1 ATTTTCATAAT-TTTCAAACA
7377659 ATTTTC-TATATTTT-AAACA
1 ATTTTCATA-ATTTTCAAACA
7377678 ATTTTCATAATTTT
1 ATTTTCATAATTTT
7377692 TATAGCTTTA
Statistics
Matches: 29, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
19 15 0.52
20 12 0.41
21 2 0.07
ACGTcount: A:0.38, C:0.08, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTTCATAATTTTCAAACA
Found at i:7383342 original size:44 final size:45
Alignment explanation
Indices: 7383220--7383453 Score: 282
Period size: 44 Copynumber: 5.3 Consensus size: 45
7383210 ATTGAGGATT
7383220 ACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
1 ACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
* *** ** *
7383265 ACAGATCTTGTCTTCATGTACTGG-CATGAAGTAGATCAAAG-AA
1 ACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
7383308 ACA-AGTCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
1 ACAGA-TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
* *** ** *
7383353 ACAGATCTTGTCTTCATGTACTGG-CATGAAGTAGATCAAAG-AA
1 ACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
7383396 ACA-AGTCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
1 ACAGA-TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
7383441 ACAGATCTTGTCT
1 ACAGATCTTGTCT
7383454 TCATGTACTG
Statistics
Matches: 153, Mismatches: 28, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.01
43 40 0.26
44 56 0.37
45 53 0.35
46 2 0.01
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (45 bp):
ACAGATCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAA
Found at i:7383499 original size:44 final size:44
Alignment explanation
Indices: 7383250--7383481 Score: 274
Period size: 44 Copynumber: 5.3 Consensus size: 44
7383240 CTGGTGGTGG
*
7383250 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCATGA
1 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
* *** * *
7383294 AGTAGATCAAAG-AAACA-AGTCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAGAAAACAGA-TCTTGTCTTCATGTACTGG-CGTGA
*
7383338 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCATGA
1 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
* *** * *
7383382 AGTAGATCAAAG-AAACA-AGTCTTGTCTCCCCATACTGGTGGTGG
1 AGTAGATCAAAGAAAACAGA-TCTTGTCTTCATGTACTGG-CGTGA
7383426 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
1 AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
7383470 AGTAGATCAAAG
1 AGTAGATCAAAG
7383482 GTAACAGGTC
Statistics
Matches: 153, Mismatches: 27, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
42 2 0.01
43 40 0.26
44 69 0.45
45 40 0.26
46 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (44 bp):
AGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGCGTGA
Found at i:7383543 original size:88 final size:88
Alignment explanation
Indices: 7383225--7383481 Score: 505
Period size: 88 Copynumber: 2.9 Consensus size: 88
7383215 GGATTACAGA
7383225 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
1 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
7383290 ATGAAGTAGATCAAAGAAACAAG
66 ATGAAGTAGATCAAAGAAACAAG
7383313 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
1 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
7383378 ATGAAGTAGATCAAAGAAACAAG
66 ATGAAGTAGATCAAAGAAACAAG
7383401 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
1 TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
*
7383466 GTGAAGTAGATCAAAG
66 ATGAAGTAGATCAAAG
7383482 GTAACAGGTC
Statistics
Matches: 168, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 168 1.00
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.27
Consensus pattern (88 bp):
TCTTGTCTCCCCATACTGGTGGTGGAGTAGATCAAAGAAAACAGATCTTGTCTTCATGTACTGGC
ATGAAGTAGATCAAAGAAACAAG
Found at i:7383559 original size:44 final size:45
Alignment explanation
Indices: 7383468--7383586 Score: 118
Period size: 44 Copynumber: 2.7 Consensus size: 45
7383458 GTACTGGCGT
* * * * * *
7383468 GAAGTAGATCAAAGGTAACAGGTCCTATCTTCCTATATCGGTAGC
1 GAAGTAGATCGAAGATTACAGATCTTATCTTCCCATATCGGTAGC
* * *
7383513 GAAGTGGATC-AA-ATATACAGATTTTATCTTCCCATA-CTGGTGGC
1 GAAGTAGATCGAAGAT-TACAGATCTTATCTTCCCATATC-GGTAGC
7383557 GAAGTAGATCGAAGATTACAGATCTTATCT
1 GAAGTAGATCGAAGATTACAGATCTTATCT
7383587 CCCTAAGCAG
Statistics
Matches: 60, Mismatches: 10, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.03
44 32 0.53
45 24 0.40
46 2 0.03
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29
Consensus pattern (45 bp):
GAAGTAGATCGAAGATTACAGATCTTATCTTCCCATATCGGTAGC
Found at i:7388554 original size:11 final size:11
Alignment explanation
Indices: 7388538--7388562 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7388528 CAATTGCATA
7388538 AAAATATTATT
1 AAAATATTATT
7388549 AAAATATTATT
1 AAAATATTATT
7388560 AAA
1 AAA
7388563 TAATTAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
AAAATATTATT
Found at i:7390316 original size:29 final size:29
Alignment explanation
Indices: 7390269--7390336 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
7390259 CACATGCCCG
7390269 ACCTGGCACAGC--CCGTGTGGCCCACACA
1 ACCTGGCACA-CATCCGTGTGGCCCACACA
* * **
7390297 GCCTGGTACACATCCGTGTGGCTTACACA
1 ACCTGGCACACATCCGTGTGGCCCACACA
7390326 ACCTGGCACAC
1 ACCTGGCACAC
7390337 GGCCAGACAC
Statistics
Matches: 32, Mismatches: 6, Indels: 3
0.78 0.15 0.07
Matches are distributed among these distances:
27 1 0.03
28 8 0.25
29 23 0.72
ACGTcount: A:0.22, C:0.38, G:0.24, T:0.16
Consensus pattern (29 bp):
ACCTGGCACACATCCGTGTGGCCCACACA
Found at i:7391060 original size:20 final size:21
Alignment explanation
Indices: 7391021--7391062 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
7391011 TGAAGAAAGA
7391021 GAAAGAAACAAAAGGAAAAAT
1 GAAAGAAACAAAAGGAAAAAT
*
7391042 GAAAGAAAGAAAA-GAAAAAT
1 GAAAGAAACAAAAGGAAAAAT
7391062 G
1 G
7391063 GAACGTGAGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 8 0.40
21 12 0.60
ACGTcount: A:0.71, C:0.02, G:0.21, T:0.05
Consensus pattern (21 bp):
GAAAGAAACAAAAGGAAAAAT
Found at i:7391893 original size:20 final size:19
Alignment explanation
Indices: 7391870--7391913 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
7391860 ACATCATAAA
7391870 AAAT-AAAAAAAAAGGAGTAT
1 AAATCAAAAAAAAA-GAG-AT
*
7391890 AAATCAAATAAAAAGAGAT
1 AAATCAAAAAAAAAGAGAT
7391909 AAATC
1 AAATC
7391914 TCAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 7 0.32
21 8 0.36
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (19 bp):
AAATCAAAAAAAAAGAGAT
Found at i:7392147 original size:20 final size:19
Alignment explanation
Indices: 7392124--7392167 Score: 54
Period size: 21 Copynumber: 2.3 Consensus size: 19
7392114 ACATCATAAA
7392124 AAAT-AAAAAAAAAGGAGTAT
1 AAATCAAAAAAAAA-GAG-AT
*
7392144 AAATCAAATAAAAAGAGAT
1 AAATCAAAAAAAAAGAGAT
7392163 AAATC
1 AAATC
7392168 TCAAAATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 7 0.32
20 7 0.32
21 8 0.36
ACGTcount: A:0.68, C:0.05, G:0.11, T:0.16
Consensus pattern (19 bp):
AAATCAAAAAAAAAGAGAT
Found at i:7392266 original size:254 final size:255
Alignment explanation
Indices: 7391809--7392320 Score: 1017
Period size: 254 Copynumber: 2.0 Consensus size: 255
7391799 TAATTTTTAT
7391809 ATAGAAATTTTAAGTTAATATCATTATTTTAAATATAAAATATTTATTAAAACATCATAAAAAAT
1 ATAGAAATTTTAAGTTAATATCATTATTTTAAATATAAAATATTTATTAAAACATCATAAAAAAT
7391874 AAAAAAAAAGGAGTATAAATCAAATAAAAAGAGATAAATCTCAAAATTATATATTAATTTTGTTT
66 AAAAAAAAAGGAGTATAAATCAAATAAAAAGAGATAAATCTCAAAATTATATATTAATTTTGTTT
7391939 TTGTGCAATTTTATACATGAAACTTTGATTTTATTTTATTTGATTTCACAAGATACTAACATAAT
131 TTGTGCAATTTTATACATGAAACTTTGATTTTATTTTATTTGATTTCACAAGATACTAACATAAT
7392004 TATCAATACAATGTCATTTTAAGTTTACATATTGCATGCATAAATAATCATATTTATCCA
196 TATCAATACAATGTCATTTTAAGTTTACATATTGCATGCATAAATAATCATATTTATCCA
7392064 ATAGAAA-TTTAAGTTAATATCATTATTTTAAATATAAAATATTTATTAAAACATCATAAAAAAT
1 ATAGAAATTTTAAGTTAATATCATTATTTTAAATATAAAATATTTATTAAAACATCATAAAAAAT
7392128 AAAAAAAAAGGAGTATAAATCAAATAAAAAGAGATAAATCTCAAAATTATATATTAATTTTGTTT
66 AAAAAAAAAGGAGTATAAATCAAATAAAAAGAGATAAATCTCAAAATTATATATTAATTTTGTTT
7392193 TTGTGCAATTTTATACATGAAACTTTGATTTTATTTTATTTGATTTCACAAGATACTAACATAAT
131 TTGTGCAATTTTATACATGAAACTTTGATTTTATTTTATTTGATTTCACAAGATACTAACATAAT
7392258 TATCAATACAATGTCATTTTAAGTTTACATATTGCATGCATAAATAATCATATTTATCCA
196 TATCAATACAATGTCATTTTAAGTTTACATATTGCATGCATAAATAATCATATTTATCCA
7392318 ATA
1 ATA
7392321 TAAAAGTAAA
Statistics
Matches: 257, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
254 250 0.97
255 7 0.03
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (255 bp):
ATAGAAATTTTAAGTTAATATCATTATTTTAAATATAAAATATTTATTAAAACATCATAAAAAAT
AAAAAAAAAGGAGTATAAATCAAATAAAAAGAGATAAATCTCAAAATTATATATTAATTTTGTTT
TTGTGCAATTTTATACATGAAACTTTGATTTTATTTTATTTGATTTCACAAGATACTAACATAAT
TATCAATACAATGTCATTTTAAGTTTACATATTGCATGCATAAATAATCATATTTATCCA
Found at i:7392557 original size:20 final size:21
Alignment explanation
Indices: 7392532--7392625 Score: 81
Period size: 20 Copynumber: 4.7 Consensus size: 21
7392522 TAAAAATAAA
*
7392532 AAAGTATTGATACCTTTA-AC
1 AAAGTATTGATACCTTTACTC
*
7392552 AAAGTATCGATA-CTTTACTC
1 AAAGTATTGATACCTTTACTC
* *
7392572 AGAGTATCT-ATA-CTTTACCC
1 AAAGTAT-TGATACCTTTACTC
** *
7392592 AAAGTATCAATACC-TTCCTC
1 AAAGTATTGATACCTTTACTC
7392612 AAAGTATTGATACC
1 AAAGTATTGATACC
7392626 ATGTCCCACC
Statistics
Matches: 59, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
19 5 0.08
20 53 0.90
21 1 0.02
ACGTcount: A:0.36, C:0.21, G:0.10, T:0.33
Consensus pattern (21 bp):
AAAGTATTGATACCTTTACTC
Found at i:7394560 original size:2 final size:2
Alignment explanation
Indices: 7394553--7394583 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7394543 TTTCAGATTT
7394553 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7394584 TTGTATTGTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7396237 original size:23 final size:23
Alignment explanation
Indices: 7396186--7396237 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 23
7396176 AGATATTTTT
*
7396186 TCGAATTTTGAATTCAAATCAAG
1 TCGAATTTTGAATTCAAATCAAC
* *
7396209 TTGAATTTTCTAATTCAAAT-AAC
1 TCGAATTTT-GAATTCAAATCAAC
7396232 TCGAAT
1 TCGAAT
7396238 AATTCAAATA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
23 15 0.62
24 9 0.38
ACGTcount: A:0.38, C:0.13, G:0.10, T:0.38
Consensus pattern (23 bp):
TCGAATTTTGAATTCAAATCAAC
Found at i:7396349 original size:18 final size:19
Alignment explanation
Indices: 7396303--7396357 Score: 85
Period size: 19 Copynumber: 2.9 Consensus size: 19
7396293 CTTTAAACCC
*
7396303 TTTTACTTTCCCCTAAAAA
1 TTTTACTTTCCCCCAAAAA
7396322 TTTTACTTTCCCCCAAAAA
1 TTTTACTTTCCCCCAAAAA
7396341 TTTTA-TTTCCCTCCAAA
1 TTTTACTTTCCC-CCAAA
7396358 CCCTCCAAAA
Statistics
Matches: 34, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
18 6 0.18
19 28 0.82
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (19 bp):
TTTTACTTTCCCCCAAAAA
Found at i:7396433 original size:73 final size:73
Alignment explanation
Indices: 7396302--7396474 Score: 201
Period size: 73 Copynumber: 2.4 Consensus size: 73
7396292 CCTTTAAACC
* * * *
7396302 CTTTTACTTTC-CCCTAAAAATTTTACTTTCCCCCAAAAATTTTATTTCCCTCCAAACCCTCCAA
1 CTTTTACTTTCTCCCCAAAACTTTTACTTTCCCCCAAAAATTTTACTTCCCTCCAAACCCCCCAA
7396366 AACTTTTTT
66 AA-TTTTTT
* * * * *
7396375 -TTGTTATTTTCTCCCCACAACTTTTAC-TTCCCCTAGAGAATTTTACTT-CCTCCCAACCCCCC
1 CTT-TTACTTTCTCCCCAAAACTTTTACTTTCCCCCA-AAAATTTTACTTCCCTCCAAACCCCCC
7396437 AAAATTTTTT
64 AAAATTTTTT
7396447 CCTTTTACTTTCTCCCCAAAACTTTTAC
1 -CTTTTACTTTCTCCCCAAAACTTTTAC
7396475 ATCTTCCAAA
Statistics
Matches: 84, Mismatches: 11, Indels: 10
0.80 0.10 0.10
Matches are distributed among these distances:
72 8 0.10
73 52 0.62
74 24 0.29
ACGTcount: A:0.24, C:0.33, G:0.02, T:0.41
Consensus pattern (73 bp):
CTTTTACTTTCTCCCCAAAACTTTTACTTTCCCCCAAAAATTTTACTTCCCTCCAAACCCCCCAA
AATTTTTT
Found at i:7399943 original size:43 final size:43
Alignment explanation
Indices: 7399883--7399972 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
7399873 GTTATGTTAC
7399883 GTGTGTTTGATAAAACCAATCATAGTTAGTAGATTTTTTTTAT
1 GTGTGTTTGATAAAACCAATCATAGTTAGTAGATTTTTTTTAT
*
7399926 GTGTGTTTGATAAAACCAATCTTAGTTAGTAGATTTTTTTTAT
1 GTGTGTTTGATAAAACCAATCATAGTTAGTAGATTTTTTTTAT
7399969 GTGT
1 GTGT
7399973 TTGGGTAATG
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.28, C:0.07, G:0.18, T:0.48
Consensus pattern (43 bp):
GTGTGTTTGATAAAACCAATCATAGTTAGTAGATTTTTTTTAT
Found at i:7402693 original size:27 final size:27
Alignment explanation
Indices: 7402647--7402718 Score: 99
Period size: 27 Copynumber: 2.7 Consensus size: 27
7402637 TAGTGGAGGG
* *
7402647 ACTGCCACAGGCGGCACCAATGGTGCC
1 ACTGCCAAAGGCGGCACCAAAGGTGCC
* *
7402674 AGTGGCAAAGGCGGCACCAAAGGTGCC
1 ACTGCCAAAGGCGGCACCAAAGGTGCC
*
7402701 ACTGCCACAGGCGGCACC
1 ACTGCCAAAGGCGGCACC
7402719 CCCATTTGTT
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.25, C:0.35, G:0.32, T:0.08
Consensus pattern (27 bp):
ACTGCCAAAGGCGGCACCAAAGGTGCC
Found at i:7403062 original size:158 final size:159
Alignment explanation
Indices: 7402827--7403125 Score: 458
Period size: 158 Copynumber: 1.9 Consensus size: 159
7402817 AAAAGAAATA
7402827 AAAAAACGAAAATAGTATATTTACTGAAAGTAATAAAATCCAAAAAAAAGAAGAAAAATACGAAC
1 AAAAAACGAAAATAGTATATTTACTGAAAGTAATAAAATCC--AAAAAAGAAGAAAAATACGAAC
7402892 AAATGGCCAAAATAAGGG-TTTTTCACTAAATTTATATAAAAAATACACTAAAATAATACATTTC
64 AAATGGCCAAAATAAGGGTTTTTTCACTAAATTTATATAAAAAA-ACACTAAAATAATACATTTC
7402956 AAACATTATGTACTAAAATAACATAAAATGAT
128 AAACATTATGTACTAAAATAACATAAAATGAT
* ** * * *
7402988 AAAATACGAAAATAGTATATTTTTTGAAAGTAATAAAATTC-GAAAATAAGAAAAATACGAACAA
1 AAAAAACGAAAATAGTATATTTACTGAAAGTAATAAAATCCAAAAAAGAAGAAAAATACGAACAA
* * * *
7403052 ATGGCCAAAATGAGGGTTTTTTTACTAAATTTATATAAAAAAACATTAAATTAATACATTTCAAA
66 ATGGCCAAAATAAGGGTTTTTTCACTAAATTTATATAAAAAAACACTAAAATAATACATTTCAAA
*
7403117 CTTTATGTA
131 CATTATGTA
7403126 AAAACCCTCA
Statistics
Matches: 126, Mismatches: 11, Indels: 5
0.89 0.08 0.04
Matches are distributed among these distances:
158 65 0.52
159 24 0.19
161 37 0.29
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.28
Consensus pattern (159 bp):
AAAAAACGAAAATAGTATATTTACTGAAAGTAATAAAATCCAAAAAAGAAGAAAAATACGAACAA
ATGGCCAAAATAAGGGTTTTTTCACTAAATTTATATAAAAAAACACTAAAATAATACATTTCAAA
CATTATGTACTAAAATAACATAAAATGAT
Found at i:7403423 original size:158 final size:158
Alignment explanation
Indices: 7403125--7403533 Score: 619
Period size: 158 Copynumber: 2.6 Consensus size: 158
7403115 AACTTTATGT
* *
7403125 AAAAACCCTCATTTTGGCCATTTGTTCGTATTTTTCTTATTTT-AGGATTTTATTACTTTCAAAA
1 AAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTATTTTCA-GATTTTATTACTTTCAAAA
* * * * *
7403189 TATATACTATCTTCGTGTCTATTTATTTTATTTTATTTTAGTACATAATTTTCGAAATGTATTAT
65 AATATACTATTTTCGTTTTTATTTATTTTATATTATTTTAGTACATAATTTTCGAAATGTATTAT
7403254 TTTAGTGTGTTTTTTATATAAATTTAGTG
130 TTTAGTGTGTTTTTTATATAAATTTAGTG
* *
7403283 AAAACCCCTTATTTTTGCCCTTTGTTCGTATTTTTCTTATTTTCAGATTTTATTACTTTCAAAAA
1 AAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTATTTTCAGATTTTATTACTTTCAAAAA
*
7403348 ATATACTATTTTCGTATTTTA-TTATTTTATATTATTTTAGTACATAGTGTTT-GAAATGTATTA
66 ATATACTATTTTCGT-TTTTATTTATTTTATATTATTTTAGTACATAAT-TTTCGAAATGTATTA
7403411 TTTTAGTGTGTTTTTTATATAAATTTAGTG
129 TTTTAGTGTGTTTTTTATATAAATTTAGTG
* * **
7403441 AAAAACCCTTATTTTGGCCCTTTGTCCGTATTTTTCTT-TTTTCGGATTTTATTACTTTCAGTAA
1 AAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTATTTTCAGATTTTATTACTTTCAAAAA
*
7403505 ATATACTATTTTTGTTTTTTATTTATTTT
66 ATATACTATTTTCG-TTTTTATTTATTTT
7403534 TCATATTTTA
Statistics
Matches: 229, Mismatches: 17, Indels: 10
0.89 0.07 0.04
Matches are distributed among these distances:
157 41 0.18
158 181 0.79
159 7 0.03
ACGTcount: A:0.25, C:0.11, G:0.10, T:0.55
Consensus pattern (158 bp):
AAAAACCCTTATTTTGGCCCTTTGTTCGTATTTTTCTTATTTTCAGATTTTATTACTTTCAAAAA
ATATACTATTTTCGTTTTTATTTATTTTATATTATTTTAGTACATAATTTTCGAAATGTATTATT
TTAGTGTGTTTTTTATATAAATTTAGTG
Found at i:7407316 original size:405 final size:405
Alignment explanation
Indices: 7406565--7407374 Score: 1620
Period size: 405 Copynumber: 2.0 Consensus size: 405
7406555 TAGGAAAAAC
7406565 ATCACCACATTTGAGTTCGGGACCGTTGTTGGATGCTGAATTGGCGATCAAAATTTAATACCTAA
1 ATCACCACATTTGAGTTCGGGACCGTTGTTGGATGCTGAATTGGCGATCAAAATTTAATACCTAA
7406630 CCTGTGCACGGAAAACAAAACCGTACGCTGAGTAAAACTCAGTGGTATTTCTATAATCCGAATAT
66 CCTGTGCACGGAAAACAAAACCGTACGCTGAGTAAAACTCAGTGGTATTTCTATAATCCGAATAT
7406695 TTAAATATTATAAATTACAAACATACAATTGAAATATAAACACATATTAATATTTAAATATTACA
131 TTAAATATTATAAATTACAAACATACAATTGAAATATAAACACATATTAATATTTAAATATTACA
7406760 GCAACAATATCATATTTCATTTGTTTCACAAATATCTCAATTCTCATACTTGCTATATAAATAGC
196 GCAACAATATCATATTTCATTTGTTTCACAAATATCTCAATTCTCATACTTGCTATATAAATAGC
7406825 TTTTCACAATTTATTTCACATTTCATTATGCAATTGCATTTTCCATTCCATATTCATTCATGAGT
261 TTTTCACAATTTATTTCACATTTCATTATGCAATTGCATTTTCCATTCCATATTCATTCATGAGT
7406890 ATATAACTCATATAATTCATATGTTTGCAACATATTTAACATTCTATTTTCAATTCACTATTTCA
326 ATATAACTCATATAATTCATATGTTTGCAACATATTTAACATTCTATTTTCAATTCACTATTTCA
7406955 CTTCCATTTCTCATA
391 CTTCCATTTCTCATA
7406970 ATCACCACATTTGAGTTCGGGACCGTTGTTGGATGCTGAATTGGCGATCAAAATTTAATACCTAA
1 ATCACCACATTTGAGTTCGGGACCGTTGTTGGATGCTGAATTGGCGATCAAAATTTAATACCTAA
7407035 CCTGTGCACGGAAAACAAAACCGTACGCTGAGTAAAACTCAGTGGTATTTCTATAATCCGAATAT
66 CCTGTGCACGGAAAACAAAACCGTACGCTGAGTAAAACTCAGTGGTATTTCTATAATCCGAATAT
7407100 TTAAATATTATAAATTACAAACATACAATTGAAATATAAACACATATTAATATTTAAATATTACA
131 TTAAATATTATAAATTACAAACATACAATTGAAATATAAACACATATTAATATTTAAATATTACA
7407165 GCAACAATATCATATTTCATTTGTTTCACAAATATCTCAATTCTCATACTTGCTATATAAATAGC
196 GCAACAATATCATATTTCATTTGTTTCACAAATATCTCAATTCTCATACTTGCTATATAAATAGC
7407230 TTTTCACAATTTATTTCACATTTCATTATGCAATTGCATTTTCCATTCCATATTCATTCATGAGT
261 TTTTCACAATTTATTTCACATTTCATTATGCAATTGCATTTTCCATTCCATATTCATTCATGAGT
7407295 ATATAACTCATATAATTCATATGTTTGCAACATATTTAACATTCTATTTTCAATTCACTATTTCA
326 ATATAACTCATATAATTCATATGTTTGCAACATATTTAACATTCTATTTTCAATTCACTATTTCA
7407360 CTTCCATTTCTCATA
391 CTTCCATTTCTCATA
7407375 CCATGTCATT
Statistics
Matches: 405, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
405 405 1.00
ACGTcount: A:0.35, C:0.18, G:0.09, T:0.37
Consensus pattern (405 bp):
ATCACCACATTTGAGTTCGGGACCGTTGTTGGATGCTGAATTGGCGATCAAAATTTAATACCTAA
CCTGTGCACGGAAAACAAAACCGTACGCTGAGTAAAACTCAGTGGTATTTCTATAATCCGAATAT
TTAAATATTATAAATTACAAACATACAATTGAAATATAAACACATATTAATATTTAAATATTACA
GCAACAATATCATATTTCATTTGTTTCACAAATATCTCAATTCTCATACTTGCTATATAAATAGC
TTTTCACAATTTATTTCACATTTCATTATGCAATTGCATTTTCCATTCCATATTCATTCATGAGT
ATATAACTCATATAATTCATATGTTTGCAACATATTTAACATTCTATTTTCAATTCACTATTTCA
CTTCCATTTCTCATA
Found at i:7408477 original size:11 final size:10
Alignment explanation
Indices: 7408461--7408522 Score: 61
Period size: 11 Copynumber: 5.8 Consensus size: 10
7408451 GTCTTTCTCC
7408461 TTTTCTTTCCT
1 TTTTCTTT-CT
7408472 TTTTCTTTCT
1 TTTTCTTTCT
*
7408482 TTTTCCCTTCT
1 TTTT-CTTTCT
* *
7408493 GTTTCATTTGT
1 TTTTC-TTTCT
7408504 TCTTTCTTTCT
1 T-TTTCTTTCT
7408515 TTTTCTTT
1 TTTTCTTT
7408523 TTCTTTTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 14 0.33
11 24 0.57
12 4 0.10
ACGTcount: A:0.02, C:0.23, G:0.03, T:0.73
Consensus pattern (10 bp):
TTTTCTTTCT
Found at i:7408486 original size:29 final size:29
Alignment explanation
Indices: 7408454--7408512 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
7408444 AGCTTTGGTC
* *
7408454 TTTCTCCTTTTCTTTCCTTT-TTCTTTCTT
1 TTTC-CCTTCTCTTTCATTTGTTCTTTCTT
*
7408483 TTTCCCTTCTGTTTCATTTGTTCTTTCTT
1 TTTCCCTTCTCTTTCATTTGTTCTTTCTT
7408512 T
1 T
7408513 CTTTTTCTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
28 12 0.46
29 14 0.54
ACGTcount: A:0.02, C:0.25, G:0.03, T:0.69
Consensus pattern (29 bp):
TTTCCCTTCTCTTTCATTTGTTCTTTCTT
Found at i:7408557 original size:7 final size:7
Alignment explanation
Indices: 7408545--7408610 Score: 53
Period size: 7 Copynumber: 8.6 Consensus size: 7
7408535 ATTTACTTAT
7408545 TATAATA
1 TATAATA
7408552 TATAATA
1 TATAATA
7408559 TGATATATA
1 T-ATA-ATA
7408568 TACTTAATA
1 TA--TAATA
*
7408577 -ATTAAGA
1 TA-TAATA
7408584 TATAATA
1 TATAATA
7408591 TTATAATA
1 -TATAATA
7408599 TTATAATA
1 -TATAATA
7408607 TATA
1 TATA
7408611 TTTTAACCTT
Statistics
Matches: 51, Mismatches: 2, Indels: 12
0.78 0.03 0.18
Matches are distributed among these distances:
7 21 0.41
8 21 0.41
9 7 0.14
10 2 0.04
ACGTcount: A:0.52, C:0.02, G:0.03, T:0.44
Consensus pattern (7 bp):
TATAATA
Found at i:7408572 original size:30 final size:31
Alignment explanation
Indices: 7408532--7408610 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 31
7408522 TTTCTTTTAT
* *
7408532 TATATTTACTTATTATAATATATA-ATATGA
1 TATATATACTTATTATAATATATAGATATAA
7408562 TATATATACTTA--ATAAT-TA-AGATATAA
1 TATATATACTTATTATAATATATAGATATAA
*
7408589 TAT-TATA-ATATTATAATATATA
1 TATATATACTTATTATAATATATA
7408611 TTTTAACCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 11
0.75 0.05 0.20
Matches are distributed among these distances:
25 2 0.05
26 5 0.12
27 15 0.37
28 7 0.17
29 1 0.02
30 11 0.27
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.47
Consensus pattern (31 bp):
TATATATACTTATTATAATATATAGATATAA
Found at i:7408597 original size:8 final size:8
Alignment explanation
Indices: 7408542--7408607 Score: 50
Period size: 8 Copynumber: 8.4 Consensus size: 8
7408532 TATATTTACT
7408542 TATTATAA
1 TATTATAA
7408550 TA-TATAA
1 TATTATAA
*
7408557 TATGAT-A
1 TATTATAA
7408564 TATATACTTAA
1 TAT-TA--TAA
*
7408575 TAAT-TAA
1 TATTATAA
*
7408582 GA-TATAA
1 TATTATAA
7408589 TATTATAA
1 TATTATAA
7408597 TATTATAA
1 TATTATAA
7408605 TAT
1 TAT
7408608 ATATTTTAAC
Statistics
Matches: 46, Mismatches: 5, Indels: 14
0.71 0.08 0.22
Matches are distributed among these distances:
6 1 0.02
7 19 0.41
8 21 0.46
10 2 0.04
11 3 0.07
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (8 bp):
TATTATAA
Found at i:7416453 original size:22 final size:23
Alignment explanation
Indices: 7416417--7416489 Score: 66
Period size: 22 Copynumber: 3.3 Consensus size: 23
7416407 TTTAAAATTT
*
7416417 ATAAAATT-ATAAATAATAT-ACA
1 ATAAAATTAAT-AATAATATGAAA
*
7416439 ATAAAATTAATAATATTATGAAA
1 ATAAAATTAATAATAATATGAAA
7416462 ATAAAA--AATTAATAATAT-AAA
1 ATAAAATTAA-TAATAATATGAAA
*
7416483 ATTAAAT
1 ATAAAAT
7416490 AAATCAAAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 8
0.78 0.07 0.15
Matches are distributed among these distances:
21 10 0.23
22 23 0.53
23 10 0.23
ACGTcount: A:0.64, C:0.01, G:0.01, T:0.33
Consensus pattern (23 bp):
ATAAAATTAATAATAATATGAAA
Found at i:7416499 original size:15 final size:14
Alignment explanation
Indices: 7416439--7416487 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
7416429 ATAATATACA
7416439 ATAAAATTAATAAT
1 ATAAAATTAATAAT
* *
7416453 AT--TATGAA-AAT
1 ATAAAATTAATAAT
*
7416464 AAAAAATTAATAAT
1 ATAAAATTAATAAT
7416478 ATAAAATTAA
1 ATAAAATTAA
7416488 ATAAATCAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 6
0.68 0.16 0.16
Matches are distributed among these distances:
11 4 0.15
12 4 0.15
13 4 0.15
14 14 0.54
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (14 bp):
ATAAAATTAATAAT
Found at i:7417481 original size:19 final size:20
Alignment explanation
Indices: 7417448--7417486 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
7417438 ACATGTGTAA
7417448 TAATAATAAATATATGTATT
1 TAATAATAAATATATGTATT
7417468 TAATAATAAA-ATATGTATT
1 TAATAATAAATATATGTATT
7417487 GCTTATTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 9 0.47
20 10 0.53
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (20 bp):
TAATAATAAATATATGTATT
Found at i:7418678 original size:40 final size:40
Alignment explanation
Indices: 7418556--7418695 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 40
7418546 GACTTTGAGT
* * *
7418556 CGATGAGACATTGGGTGTCAATTTATTACTTCGGATTAAC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAAC
* * * * **
7418596 TCGATGAGGCATTGGGTGTC-AA-T-TTAC-TCCAGTTTAGG
1 -CGATGAGACACTGGGTGTCAAATTATTACTTCGA-ATTAAC
* *
7418634 CGATGAGACACTAGGTGTCAAATTATTACTTCGAATTATC
1 CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAAC
* *
7418674 CGATGAGGCACTGGGTGCCAAA
1 CGATGAGACACTGGGTGTCAAA
7418696 CTGGTGTGTT
Statistics
Matches: 77, Mismatches: 17, Indels: 11
0.73 0.16 0.10
Matches are distributed among these distances:
37 18 0.23
38 9 0.12
39 2 0.03
40 27 0.35
41 21 0.27
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (40 bp):
CGATGAGACACTGGGTGTCAAATTATTACTTCGAATTAAC
Found at i:7419763 original size:25 final size:26
Alignment explanation
Indices: 7419707--7419754 Score: 73
Period size: 24 Copynumber: 1.9 Consensus size: 26
7419697 TTATGTGAGA
*
7419707 TAATTTTCAATAAAAGTTAAATATTT
1 TAATTTTCAATAAAAGATAAATATTT
7419733 TAATTTT-AATAAAA-ATAAATAT
1 TAATTTTCAATAAAAGATAAATAT
7419755 AATTTATTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 7 0.33
25 7 0.33
26 7 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.44
Consensus pattern (26 bp):
TAATTTTCAATAAAAGATAAATATTT
Found at i:7428834 original size:4 final size:4
Alignment explanation
Indices: 7428825--7428849 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
7428815 TCATATATAG
7428825 AGAT AGAT AGAT AGAT AGAT AGAT A
1 AGAT AGAT AGAT AGAT AGAT AGAT A
7428850 CAAGTGAGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.24, T:0.24
Consensus pattern (4 bp):
AGAT
Found at i:7435904 original size:11 final size:11
Alignment explanation
Indices: 7435888--7435926 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
7435878 TAATTATATA
7435888 TATAAATTAAT
1 TATAAATTAAT
*
7435899 TATAAAGTATAT
1 TATAAATTA-AT
7435911 TATTAAATTAAT
1 TA-TAAATTAAT
7435923 TATA
1 TATA
7435927 TTATAAATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
11 10 0.42
12 8 0.33
13 6 0.25
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (11 bp):
TATAAATTAAT
Found at i:7437174 original size:21 final size:22
Alignment explanation
Indices: 7437146--7437209 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 22
7437136 GCTTTGCCGA
7437146 TCAGGCACTATATGTGTCGTAT
1 TCAGGCACTATATGTGTCGTAT
* **
7437168 T-AGGCACCACGTGTGTCGT-T
1 TCAGGCACTATATGTGTCGTAT
* *
7437188 TCAGGCACTTTATGTGTTGTAT
1 TCAGGCACTATATGTGTCGTAT
7437210 ACTGCTTCTG
Statistics
Matches: 32, Mismatches: 8, Indels: 4
0.73 0.18 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.88
22 2 0.06
ACGTcount: A:0.19, C:0.19, G:0.25, T:0.38
Consensus pattern (22 bp):
TCAGGCACTATATGTGTCGTAT
Found at i:7438414 original size:25 final size:25
Alignment explanation
Indices: 7438385--7438438 Score: 65
Period size: 25 Copynumber: 2.2 Consensus size: 25
7438375 TTGTTAAAAC
7438385 AATTTCTAAAG-AAAACTCAAGAGAG
1 AATTTCTAAAGAAAAACTCAA-AGAG
* **
7438410 AATTTTTGGAGAAAAACTCAAAGAG
1 AATTTCTAAAGAAAAACTCAAAGAG
7438435 AATT
1 AATT
7438439 CTGCACGTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.50, C:0.09, G:0.17, T:0.24
Consensus pattern (25 bp):
AATTTCTAAAGAAAAACTCAAAGAG
Found at i:7439016 original size:55 final size:55
Alignment explanation
Indices: 7438928--7439036 Score: 191
Period size: 55 Copynumber: 2.0 Consensus size: 55
7438918 GCGGGATCTT
* **
7438928 TGGTTCAAGTCTAGGATGGCCTAGCTGTTCCAAGGAAAAGAATAGAAGAAGCATC
1 TGGTTCAAGTCTAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCATC
7438983 TGGTTCAAGTCTAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCAT
1 TGGTTCAAGTCTAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCAT
7439037 TTGGCTCCTT
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 51 1.00
ACGTcount: A:0.35, C:0.17, G:0.28, T:0.19
Consensus pattern (55 bp):
TGGTTCAAGTCTAGGATGGCCCAGCTGCGCCAAGGAAAAGAATAGAAGAAGCATC
Found at i:7440919 original size:20 final size:20
Alignment explanation
Indices: 7440894--7440939 Score: 67
Period size: 20 Copynumber: 2.3 Consensus size: 20
7440884 TTAAATGTAA
*
7440894 ATTTTGAAATTTTTATAAA-T
1 ATTTTGAAATTTTGA-AAATT
7440914 ATTTTGAAATTTTGAAAATT
1 ATTTTGAAATTTTGAAAATT
7440934 ATTTTG
1 ATTTTG
7440940 TATTTTTTGT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 3 0.12
20 21 0.88
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (20 bp):
ATTTTGAAATTTTGAAAATT
Found at i:7443909 original size:22 final size:22
Alignment explanation
Indices: 7443884--7443926 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
7443874 TCTCCCTATT
7443884 TTGCGA-TCATTTTACTATTATG
1 TTGCGACT-ATTTTACTATTATG
* *
7443906 TTGCTACTATTTTATTATTAT
1 TTGCGACTATTTTACTATTAT
7443927 TGTTTGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 17 0.94
23 1 0.06
ACGTcount: A:0.23, C:0.12, G:0.09, T:0.56
Consensus pattern (22 bp):
TTGCGACTATTTTACTATTATG
Found at i:7471660 original size:60 final size:58
Alignment explanation
Indices: 7471551--7471681 Score: 167
Period size: 60 Copynumber: 2.2 Consensus size: 58
7471541 ATCACTTTAA
** *
7471551 TATTAAATTAATTTAATATTTATCAAGATAAATATTAGATTAAATTTAAT-TT-AAAC
1 TATTAAATTAATAGAATATTTATCAAGATAAATATTAAATTAAATTTAATATTAAAAC
*
7471607 TTATTAAATTAATAGAATATTTATATACAAGATAAATATTAAATTATATTTAATATTAAAAC
1 -TATTAAATTAATAGAATA-TT-TAT-CAAGATAAATATTAAATTAAATTTAATATTAAAAC
*
7471669 TATTAAAATAATA
1 TATTAAATTAATA
7471682 TTATTATTGG
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
57 16 0.25
58 2 0.03
59 3 0.05
60 25 0.39
61 14 0.22
62 4 0.06
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (58 bp):
TATTAAATTAATAGAATATTTATCAAGATAAATATTAAATTAAATTTAATATTAAAAC
Found at i:7476237 original size:21 final size:23
Alignment explanation
Indices: 7476203--7476247 Score: 58
Period size: 21 Copynumber: 2.0 Consensus size: 23
7476193 CTTAGGAGGT
**
7476203 GGATATTGTGATACC-C-AAAGG
1 GGATATTGCAATACCACTAAAGG
7476224 GGATATTGCAATACCACTAAAGG
1 GGATATTGCAATACCACTAAAGG
7476247 G
1 G
7476248 AATCCTTGAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 13 0.65
22 1 0.05
23 6 0.30
ACGTcount: A:0.36, C:0.16, G:0.27, T:0.22
Consensus pattern (23 bp):
GGATATTGCAATACCACTAAAGG
Found at i:7479615 original size:21 final size:21
Alignment explanation
Indices: 7479589--7479642 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
7479579 TCAACTCTTT
7479589 TGAGCTTCTGTTCAGATATTA
1 TGAGCTTCTGTTCAGATATTA
* *
7479610 TGAGCTTCTGTTCAGCTCTTA
1 TGAGCTTCTGTTCAGATATTA
7479631 TGAGCTTCTGTT
1 TGAGCTTCTGTT
7479643 GGCGTGTTCG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.17, C:0.19, G:0.20, T:0.44
Consensus pattern (21 bp):
TGAGCTTCTGTTCAGATATTA
Found at i:7486056 original size:50 final size:50
Alignment explanation
Indices: 7485996--7486094 Score: 130
Period size: 50 Copynumber: 2.0 Consensus size: 50
7485986 AAAGAAATGA
* * *
7485996 TACAAATAGAATCCGTA-AAGAAC-TACTCTTCTTCTATTTGATATTGATTG
1 TACAAATAGAATCCGTATAA-AACGT-CTCTCCTTCTATATGACATTGATTG
*
7486046 TACAAGTAGAATCCGTATAAAACGTCTCTCCTTCTATATGACATTGATT
1 TACAAATAGAATCCGTATAAAACGTCTCTCCTTCTATATGACATTGATT
7486095 AGAATAATAT
Statistics
Matches: 43, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
50 40 0.93
51 3 0.07
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (50 bp):
TACAAATAGAATCCGTATAAAACGTCTCTCCTTCTATATGACATTGATTG
Done.