Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 25 of 163
Found at i:7824847 original size:15 final size:16
Alignment explanation
Indices: 7824818--7824847 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7824808 CTAACATGCT
7824818 TTAACACATTATCAAA
1 TTAACACATTATCAAA
7824834 TTAACACA-TATCAA
1 TTAACACATTATCAA
7824848 TAAGGCACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.50, C:0.20, G:0.00, T:0.30
Consensus pattern (16 bp):
TTAACACATTATCAAA
Found at i:7832612 original size:41 final size:41
Alignment explanation
Indices: 7832555--7832632 Score: 138
Period size: 41 Copynumber: 1.9 Consensus size: 41
7832545 ATGCACATAG
* *
7832555 TGGATGAGTTTGTAGTTAGAAAATAAATGTCTCTACGTCGT
1 TGGATGAGTTTGTAGTTAAAAAATAAATCTCTCTACGTCGT
7832596 TGGATGAGTTTGTAGTTAAAAAATAAATCTCTCTACG
1 TGGATGAGTTTGTAGTTAAAAAATAAATCTCTCTACG
7832633 CTGTTTGAGC
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 35 1.00
ACGTcount: A:0.32, C:0.10, G:0.22, T:0.36
Consensus pattern (41 bp):
TGGATGAGTTTGTAGTTAAAAAATAAATCTCTCTACGTCGT
Found at i:7838603 original size:45 final size:45
Alignment explanation
Indices: 7838554--7838642 Score: 144
Period size: 45 Copynumber: 2.0 Consensus size: 45
7838544 AACGGTAGCA
*
7838554 GTAACAGTATTCAACACACAAAGTGCTGAATCTG-TAACAGTAACG
1 GTAACAGTATTCAACACACAAAGTGCCGAATC-GATAACAGTAACG
*
7838599 GTAACAGTATTCGACACACAAAGTGCCGAATCGATAACAGTAAC
1 GTAACAGTATTCAACACACAAAGTGCCGAATCGATAACAGTAAC
7838643 AGTANNNNNN
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.40, C:0.21, G:0.18, T:0.20
Consensus pattern (45 bp):
GTAACAGTATTCAACACACAAAGTGCCGAATCGATAACAGTAACG
Found at i:7838643 original size:51 final size:47
Alignment explanation
Indices: 7838539--7838646 Score: 134
Period size: 45 Copynumber: 2.4 Consensus size: 47
7838529 TATACAGTAA
* * *
7838539 TCAGTAACGGTAGCAGTAACAGTATTCAACACACAAAGTGCTGAATC
1 TCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATC
* *
7838586 T--GTAACAGTAACGGTAACAGTATTCGACACACAAAGTGCCGAATC
1 TCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATC
*
7838631 -GA-TAACAGTAACAGTA
1 TCAGTAACAGTAACAGTA
7838647 NNNNNNNNNN
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
45 52 0.98
47 1 0.02
ACGTcount: A:0.40, C:0.20, G:0.19, T:0.20
Consensus pattern (47 bp):
TCAGTAACAGTAACAGTAACAGTATTCAACACACAAAGTGCCGAATC
Found at i:7847506 original size:45 final size:45
Alignment explanation
Indices: 7847455--7847683 Score: 399
Period size: 45 Copynumber: 5.1 Consensus size: 45
7847445 ACAGAGTGTT
*
7847455 ACAGTAATAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
*
7847500 ACAGTAACAGTATTCGACACACAAAGTACCGAGTCGGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
7847545 ACAGTAACAGTATTCGACACACAAA--GCCGAGTCGGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
*
7847588 ACAGTAACAGTATTCGACACACAAAGTACCGAGTCGGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
* *
7847633 ACAGTAACAGTATTCGACACACAAAGTGCCGAATCAGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
7847678 ACAGTA
1 ACAGTA
7847684 GTCGGCACAT
Statistics
Matches: 175, Mismatches: 7, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
43 42 0.24
45 133 0.76
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (45 bp):
ACAGTAACAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTA
Found at i:7847589 original size:88 final size:89
Alignment explanation
Indices: 7847455--7847683 Score: 406
Period size: 88 Copynumber: 2.6 Consensus size: 89
7847445 ACAGAGTGTT
*
7847455 ACAGTAATAGTATTCGACACACAAAGTGCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACAC
1 ACAGTAACAGTATTCGACACACAAAG-GCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACAC
7847520 ACAAAGTACCGAGTCGGTAACAGTA
65 ACAAAGTACCGAGTCGGTAACAGTA
7847545 ACAGTAACAGTATTCGACACACAAA-GCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACACA
1 ACAGTAACAGTATTCGACACACAAAGGCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACACA
7847609 CAAAGTACCGAGTCGGTAACAGTA
66 CAAAGTACCGAGTCGGTAACAGTA
* *
7847633 ACAGTAACAGTATTCGACACACAAAGTGCCGAATCAGTAACAGTAACAGTA
1 ACAGTAACAGTATTCGACACACAAAG-GCCGAGTCGGTAACAGTAACAGTA
7847684 GTCGGCACAT
Statistics
Matches: 134, Mismatches: 3, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
88 88 0.66
90 46 0.34
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (89 bp):
ACAGTAACAGTATTCGACACACAAAGGCCGAGTCGGTAACAGTAACAGTAACAGTATTCGACACA
CAAAGTACCGAGTCGGTAACAGTA
Found at i:7847707 original size:38 final size:39
Alignment explanation
Indices: 7847495--7847710 Score: 148
Period size: 45 Copynumber: 5.2 Consensus size: 39
7847485 GAGTCGGTAA
* * *
7847495 CAGTAACAGTAACAGTATTCGACACACAAAGTACCGAGTCGGTAA
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGA------AT
* * *
7847540 CAGTAACAGTAACAGTATTCGACACACAAAGCCGAGTCGGTAA-
1 CAGTAACAGTAACAGTAGTCGACACACAAA---GTG-CCG-AAT
* * *
7847583 CAGTAACAGTAACAGTATTCGACACACAAAGTACCGAGTCGGTAA
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGA------AT
*
7847628 CAGTAACAGTAACAGTATTCGACACACAAAGTGCCGAAT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
* * *
7847667 CAGTAACAGTAACAGTAGTCGGCACA-TAAGTGCCTAAT
1 CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
7847705 CAGTAA
1 CAGTAA
7847711 GCCGGCAATT
Statistics
Matches: 147, Mismatches: 12, Indels: 31
0.77 0.06 0.16
Matches are distributed among these distances:
38 17 0.12
39 27 0.18
40 1 0.01
43 30 0.20
44 2 0.01
45 66 0.45
48 1 0.01
49 2 0.01
50 1 0.01
ACGTcount: A:0.40, C:0.22, G:0.20, T:0.18
Consensus pattern (39 bp):
CAGTAACAGTAACAGTAGTCGACACACAAAGTGCCGAAT
Found at i:7854587 original size:11 final size:11
Alignment explanation
Indices: 7854573--7854597 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
7854563 GATATTGTAT
7854573 TGGTGGTAGTA
1 TGGTGGTAGTA
7854584 TGGTGGTAGTA
1 TGGTGGTAGTA
7854595 TGG
1 TGG
7854598 GCAATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.16, C:0.00, G:0.48, T:0.36
Consensus pattern (11 bp):
TGGTGGTAGTA
Found at i:7860989 original size:3 final size:3
Alignment explanation
Indices: 7860981--7861024 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
7860971 TTTATTTGAT
7860981 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
7861025 TTCTTTTGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7865563 original size:2 final size:2
Alignment explanation
Indices: 7865556--7865585 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
7865546 TCATGTATGC
7865556 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7865586 CAAAATCACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7871005 original size:39 final size:41
Alignment explanation
Indices: 7870923--7871010 Score: 146
Period size: 39 Copynumber: 2.2 Consensus size: 41
7870913 TTCAACACAT
7870923 CCTTTTCATTTGTCATCCTTTTCGAATAACATCCTTTTCAA
1 CCTTTTCATTTGTCATCCTTTTCGAATAACATCCTTTTCAA
7870964 CCTTTTCATTTGAT-ATCC-TTTCGAAT-ACATCCTTTTCAA
1 CCTTTTCATTTG-TCATCCTTTTCGAATAACATCCTTTTCAA
7871003 CCTTTTCA
1 CCTTTTCA
7871011 AGGATTCGAA
Statistics
Matches: 46, Mismatches: 0, Indels: 4
0.92 0.00 0.08
Matches are distributed among these distances:
39 21 0.46
40 8 0.17
41 16 0.35
42 1 0.02
ACGTcount: A:0.22, C:0.27, G:0.05, T:0.47
Consensus pattern (41 bp):
CCTTTTCATTTGTCATCCTTTTCGAATAACATCCTTTTCAA
Found at i:7871952 original size:20 final size:19
Alignment explanation
Indices: 7871927--7872060 Score: 70
Period size: 20 Copynumber: 6.6 Consensus size: 19
7871917 AGTACTAAAA
7871927 AGTACCAAAAATTATAAAGG
1 AGTACCAAAAATTAT-AAGG
* * *
7871947 AGTACCTAAAAACTATTACG
1 AGTACC-AAAAATTATAAGG
* * *
7871967 AGTACAAAAAAATATGAGGG
1 AGTACCAAAAATTAT-AAGG
* *
7871987 AATACCAAAAATTACAAAGG
1 AGTACCAAAAATTA-TAAGG
* * *
7872007 AATACCCAAAAAAAATATGAAGA
1 AGTA-CC--AAAAATTAT-AAGG
**
7872030 AGTATAAAAAATTATAAGG
1 AGTACCAAAAATTATAAGG
7872049 AAGTACCAAAAA
1 -AGTACCAAAAA
7872061 AAATACAAGG
Statistics
Matches: 83, Mismatches: 23, Indels: 16
0.68 0.19 0.13
Matches are distributed among these distances:
19 11 0.13
20 49 0.59
21 10 0.12
23 13 0.16
ACGTcount: A:0.57, C:0.11, G:0.13, T:0.18
Consensus pattern (19 bp):
AGTACCAAAAATTATAAGG
Found at i:7872020 original size:42 final size:42
Alignment explanation
Indices: 7871971--7872081 Score: 109
Period size: 43 Copynumber: 2.6 Consensus size: 42
7871961 ATTACGAGTA
*
7871971 CAAAAAAATATGAGGGAATACCAAAAATTACAAAGGAA-TACC
1 CAAAAAAATATGAGGGAATACAAAAAATTA-AAAGGAAGTACC
* * *
7872013 CAAAAAAAATATGA-AGAAGTATAAAAAATTATAAGGAAGTACC
1 C-AAAAAAATATGAGGGAA-TACAAAAAATTAAAAGGAAGTACC
* ** *
7872056 AAAAAAAATACAAGGGAATATAAAAA
1 CAAAAAAATATGAGGGAATACAAAAA
7872082 GATACGATGA
Statistics
Matches: 57, Mismatches: 8, Indels: 8
0.78 0.11 0.11
Matches are distributed among these distances:
42 28 0.49
43 29 0.51
ACGTcount: A:0.62, C:0.09, G:0.14, T:0.15
Consensus pattern (42 bp):
CAAAAAAATATGAGGGAATACAAAAAATTAAAAGGAAGTACC
Found at i:7872022 original size:43 final size:42
Alignment explanation
Indices: 7871972--7872081 Score: 116
Period size: 42 Copynumber: 2.6 Consensus size: 42
7871962 TTACGAGTAC
*
7871972 AAAAAAATATGAGGGAATACCAAAAATTACAAAGGAA-TACCCA
1 AAAAAAATATGAGGGAATACAAAAAATTA-AAAGGAAGTA-CCA
* * *
7872015 AAAAAAATATGA-AGAAGTATAAAAAATTATAAGGAAGTACCA
1 AAAAAAATATGAGGGAA-TACAAAAAATTAAAAGGAAGTACCA
** *
7872057 AAAAAAATACAAGGGAATATAAAAA
1 AAAAAAATATGAGGGAATACAAAAA
7872082 GATACGATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 30 0.53
43 27 0.47
ACGTcount: A:0.63, C:0.08, G:0.14, T:0.15
Consensus pattern (42 bp):
AAAAAAATATGAGGGAATACAAAAAATTAAAAGGAAGTACCA
Found at i:7872070 original size:22 final size:22
Alignment explanation
Indices: 7871993--7872070 Score: 56
Period size: 22 Copynumber: 3.6 Consensus size: 22
7871983 AGGGAATACC
*
7871993 AAAAATTACAAAGGAA-TACCCAA
1 AAAAAATAC-AAGGAAGTA-CCAA
* *
7872016 AAAAAATATGAA-GAAGTA--TA
1 AAAAAATA-CAAGGAAGTACCAA
* *
7872036 AAAAATTATAAGGAAGTACCAA
1 AAAAAATACAAGGAAGTACCAA
7872058 AAAAAATACAAGG
1 AAAAAATACAAGG
7872071 GAATATAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 11
0.69 0.13 0.18
Matches are distributed among these distances:
19 2 0.05
20 14 0.33
22 15 0.36
23 11 0.26
ACGTcount: A:0.63, C:0.09, G:0.13, T:0.15
Consensus pattern (22 bp):
AAAAAATACAAGGAAGTACCAA
Found at i:7872303 original size:21 final size:21
Alignment explanation
Indices: 7872277--7872346 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
7872267 AAAAAAAAAA
7872277 AAAAAATTATGAAGGAGTACC
1 AAAAAATTATGAAGGAGTACC
7872298 AAAAAATGTAT-AAGTGCACGTACC
1 AAAAAAT-TATGAAG-G-A-GTACC
** *
7872322 AGCAAATTATGAGGGAGTA-C
1 AAAAAATTATGAAGGAGTACC
7872342 AAAAA
1 AAAAA
7872347 CTATAAGAGA
Statistics
Matches: 39, Mismatches: 5, Indels: 11
0.71 0.09 0.20
Matches are distributed among these distances:
20 4 0.10
21 13 0.33
22 5 0.13
23 5 0.13
24 12 0.31
ACGTcount: A:0.50, C:0.11, G:0.20, T:0.19
Consensus pattern (21 bp):
AAAAAATTATGAAGGAGTACC
Found at i:7886683 original size:24 final size:22
Alignment explanation
Indices: 7886599--7886683 Score: 64
Period size: 24 Copynumber: 3.6 Consensus size: 22
7886589 TCCGGGCCGT
7886599 ATAACGGGAAGCTCATAAGAGCC
1 ATAACGGGAAGCTCA-AAGAGCC
* *
7886622 ATAATCAGGAAGCTC-ATGCAAGCC
1 ATAA-CGGGAAGCTCAAAG--AGCC
* *
7886646 AATAACGAGTAGCTCCAAAGAGCC
1 -ATAACGGGAAGCT-CAAAGAGCC
7886670 ATTAACGGGAAGCT
1 A-TAACGGGAAGCT
7886684 TCGGATAACC
Statistics
Matches: 47, Mismatches: 8, Indels: 13
0.69 0.12 0.19
Matches are distributed among these distances:
22 2 0.04
23 5 0.11
24 33 0.70
25 5 0.11
26 2 0.04
ACGTcount: A:0.39, C:0.22, G:0.24, T:0.15
Consensus pattern (22 bp):
ATAACGGGAAGCTCAAAGAGCC
Found at i:7886785 original size:26 final size:25
Alignment explanation
Indices: 7886721--7886786 Score: 69
Period size: 26 Copynumber: 2.6 Consensus size: 25
7886711 AGTGAGCCAG
* *
7886721 TATCGGGAAGCTCACAAAGAGCTTT
1 TATCGGGAAGCTCACAAAGAGCATA
* *
7886746 TAATCAGGAAGCTCACGAAGAGCCATA
1 T-ATCGGGAAGCTCACAAAGAG-CATA
*
7886773 TATCGGGACGCTCA
1 TATCGGGAAGCTCA
7886787 TAAGAGCTGT
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
25 1 0.03
26 29 0.88
27 3 0.09
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (25 bp):
TATCGGGAAGCTCACAAAGAGCATA
Found at i:7897985 original size:81 final size:81
Alignment explanation
Indices: 7897883--7898124 Score: 385
Period size: 81 Copynumber: 3.0 Consensus size: 81
7897873 CTTCTAGAGG
* * * * * *
7897883 TGGTTCTGATTTATCTCCTCCTCGGAAGCGGAGGGTTAGGAATGACACACCCTCACCAGAAGCTT
1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
7897948 TAGTAAACAGAGCAGA
66 TAGTAAACAGAGCAGA
*
7897964 TGGTACTGATTTATCTCCTCCTAGGAAACGTAGGGTTCGGAATGACACACCTTCACCAGAACCTT
1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
* *
7898029 TAGTAAACCGAACAGA
66 TAGTAAACAGAGCAGA
*
7898045 TGGTACTGATTTATCTCCTCCAAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
1 TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
*
7898110 TAGCAAACAGAGCAG
66 TAGTAAACAGAGCAG
7898125 GTGCTGGTCT
Statistics
Matches: 147, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 147 1.00
ACGTcount: A:0.30, C:0.24, G:0.22, T:0.23
Consensus pattern (81 bp):
TGGTACTGATTTATCTCCTCCTAGGAAACGGAGGGTTCGGAATGACACACCTTCACCAGAACCTT
TAGTAAACAGAGCAGA
Found at i:7910227 original size:5 final size:5
Alignment explanation
Indices: 7910217--7910259 Score: 86
Period size: 5 Copynumber: 8.6 Consensus size: 5
7910207 GAAAATTTTT
7910217 GATTC GATTC GATTC GATTC GATTC GATTC GATTC GATTC GAT
1 GATTC GATTC GATTC GATTC GATTC GATTC GATTC GATTC GAT
7910260 CGAATGCTCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 38 1.00
ACGTcount: A:0.21, C:0.19, G:0.21, T:0.40
Consensus pattern (5 bp):
GATTC
Found at i:7910549 original size:82 final size:82
Alignment explanation
Indices: 7910412--7910575 Score: 238
Period size: 82 Copynumber: 2.0 Consensus size: 82
7910402 TTGACAAAAG
* * * *
7910412 CTACTTAATTAAACTTTTATCCAATAAACTTGTCATATATGTATTATCTTCATAGGATATTCATG
1 CTACTTAATTAAAATTTTATCCAATAAACTTATCATATATGTATTACCCTCATAGGATATTCATG
*
7910477 ATCCGTTTAGGTTAAAT
66 ATCCCTTTAGGTTAAAT
* * * *
7910494 CTACTTAATTAAAATTTTATCCAATGAACTTATTATATGTGTGTTACCCTCATAGGATATTCATG
1 CTACTTAATTAAAATTTTATCCAATAAACTTATCATATATGTATTACCCTCATAGGATATTCATG
*
7910559 GTCCCTTTAGGTTAAAT
66 ATCCCTTTAGGTTAAAT
7910576 ATAACCTGAT
Statistics
Matches: 72, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
82 72 1.00
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.42
Consensus pattern (82 bp):
CTACTTAATTAAAATTTTATCCAATAAACTTATCATATATGTATTACCCTCATAGGATATTCATG
ATCCCTTTAGGTTAAAT
Found at i:7915298 original size:22 final size:22
Alignment explanation
Indices: 7915266--7915314 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
7915256 TTGCAGAGTC
* * *
7915266 TCATACTACCTGTAAAGGGTTT
1 TCATACAACCTATAAAGGGCTT
7915288 TCATACAACCTATAAAGGGCTT
1 TCATACAACCTATAAAGGGCTT
7915310 TCATA
1 TCATA
7915315 TACTAGTGTG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33
Consensus pattern (22 bp):
TCATACAACCTATAAAGGGCTT
Found at i:7917782 original size:16 final size:16
Alignment explanation
Indices: 7917758--7917982 Score: 441
Period size: 16 Copynumber: 14.1 Consensus size: 16
7917748 TTCGCTGTAT
*
7917758 TGGAATAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917774 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917790 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917806 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917822 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917838 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917854 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917870 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917886 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917902 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917918 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917934 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917950 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917966 TGGATTAGAGGCGTAA
1 TGGATTAGAGGCGTAA
7917982 T
1 T
7917983 AGCAAATCAA
Statistics
Matches: 208, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 208 1.00
ACGTcount: A:0.32, C:0.06, G:0.37, T:0.25
Consensus pattern (16 bp):
TGGATTAGAGGCGTAA
Found at i:7918026 original size:45 final size:44
Alignment explanation
Indices: 7917962--7918051 Score: 128
Period size: 45 Copynumber: 2.0 Consensus size: 44
7917952 GATTAGAGGC
*
7917962 GTAATGGATTAGAGGCGTAATAGCAAATCAAT-TGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAG-AAATC-ATGTGTTTGGTTGAAT
* *
7918007 GTAATGGAATAGAGGCGTAATAGTAATCTTGTGTTTGGTTGAAT
1 GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
7918051 G
1 G
7918052 GAATAGATAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
43 1 0.02
44 18 0.44
45 22 0.54
ACGTcount: A:0.31, C:0.06, G:0.29, T:0.34
Consensus pattern (44 bp):
GTAATGGAATAGAGGCGTAATAGAAATCATGTGTTTGGTTGAAT
Found at i:7918355 original size:59 final size:61
Alignment explanation
Indices: 7918189--7918355 Score: 161
Period size: 59 Copynumber: 2.8 Consensus size: 61
7918179 TTAGAAAAAA
**
7918189 ACTTAATATTAAATATTCTTATATGAATTTTCTAAAATCATAATATATAATGCTATAAAATAT
1 ACTTAATATTAAATATTCTTATATGAATTTAATAAAATCAT-A-ATATAATGCTATAAAATAT
* * * * *
7918252 AATTTAACA-TAATTATTATTAAATAT-AATTTAATAAAA--AT-ATATAAT-TTAATAAAAT-T
1 -ACTTAATATTAAATATTCTT--ATATGAATTTAATAAAATCATAATATAATGCT-ATAAAATAT
7918310 -CTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATA
1 ACTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATA
7918356 TAATACTATA
Statistics
Matches: 84, Mismatches: 11, Indels: 21
0.72 0.09 0.18
Matches are distributed among these distances:
55 4 0.05
56 17 0.20
57 9 0.11
58 4 0.05
59 19 0.23
62 2 0.02
63 9 0.11
64 16 0.19
65 4 0.05
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43
Consensus pattern (61 bp):
ACTTAATATTAAATATTCTTATATGAATTTAATAAAATCATAATATAATGCTATAAAATAT
Found at i:7921796 original size:2 final size:2
Alignment explanation
Indices: 7921789--7921827 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
7921779 CCCTCAACAA
*
7921789 AT AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7921828 AAGGATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:7922651 original size:19 final size:18
Alignment explanation
Indices: 7922623--7922659 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
7922613 ATGTAAAAAT
7922623 TATATATTTAAAATATAAA
1 TATATATTTAAAA-ATAAA
*
7922642 TATATGTTTAAAAATAAA
1 TATATATTTAAAAATAAA
7922660 ATACGACACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.41
Consensus pattern (18 bp):
TATATATTTAAAAATAAA
Found at i:7922661 original size:19 final size:18
Alignment explanation
Indices: 7922618--7922662 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
7922608 TTTACATGTA
7922618 AAAATTATATATTTAAAAT
1 AAAA-TATATATTTAAAAT
*
7922637 ATAAATATATGTTTAAAAAT
1 A-AAATATATATTT-AAAAT
7922657 AAAATA
1 AAAATA
7922663 CGACACTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 14 0.61
20 9 0.39
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (18 bp):
AAAATATATATTTAAAAT
Found at i:7931218 original size:37 final size:37
Alignment explanation
Indices: 7931168--7931240 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
7931158 CATTCTAATC
*
7931168 AATCAATTGAAATTTGGAGTAAACCCATGGGGAAATG
1 AATCAATTGAAATTTGGAGTAAACCCATAGGGAAATG
* *
7931205 AATCAATTGAAATTTGTAGTAAATCCATAGGGAAAT
1 AATCAATTGAAATTTGGAGTAAACCCATAGGGAAAT
7931241 ATAAAAATAT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (37 bp):
AATCAATTGAAATTTGGAGTAAACCCATAGGGAAATG
Found at i:7946637 original size:31 final size:30
Alignment explanation
Indices: 7946575--7946637 Score: 83
Period size: 31 Copynumber: 2.1 Consensus size: 30
7946565 TCTTTTTTCG
* *
7946575 TTTTTAATATATGGCCCAATATTTATTTAC
1 TTTTTAATAAATGGCCCAATATTTATATAC
7946605 TTTTTATATAAATGGCCCAATATGTT-TATAC
1 TTTTTA-ATAAATGGCCCAATAT-TTATATAC
7946636 TT
1 TT
7946638 ATTCTTCTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
30 6 0.21
31 21 0.72
32 2 0.07
ACGTcount: A:0.30, C:0.13, G:0.08, T:0.49
Consensus pattern (30 bp):
TTTTTAATAAATGGCCCAATATTTATATAC
Found at i:7953563 original size:44 final size:44
Alignment explanation
Indices: 7953515--7953923 Score: 396
Period size: 44 Copynumber: 9.2 Consensus size: 44
7953505 AACTTTAGCA
*
7953515 AGATAAGATTTGTAGCTTCAATCTACTCCACTGCAACTTCAAGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * *
7953559 AGATAAGATTTGTAGCTTCAATCCGTTCCACTGCAACTTCAGGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * * * * *
7953603 AGATAAGGTTTGTAGCTTCAATCCGTTCCATTGAAACTTCAGGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* *
7953647 AGATAA-AGTTTGT---TTCAATCTACTCCACTGCAACTTCAAAG
1 AGATAAGA-TTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * *
7953688 AGATAAGATTTGTAGATTCAGTCTGCTCCACTGCAACTTCACGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * ** *
7953732 AGATAAGATTTATTGTTGTAGCTTAAATATGCTCTTCTGCAACTT-TAGG
1 AGATAAG----A-T-TTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* *
7953781 AAGATAAGGTTTGTAGCTTTAATCTGCTCCACTGCAACTTCAAGG
1 -AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * * * * * * *
7953826 AGATAAAATTTGTATCTTTAATCTGTTCCACTGTAATTTTAGGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
* * * *
7953870 AGATAAGATTTGTAGCTTTAATTTACTCCACTGCAACTTCATGG
1 AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
*
7953914 AAATAAGATT
1 AGATAAGATT
7953924 CGCTATGATA
Statistics
Matches: 301, Mismatches: 51, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
41 32 0.11
42 1 0.00
44 229 0.76
45 4 0.01
48 1 0.00
49 3 0.01
50 31 0.10
ACGTcount: A:0.30, C:0.18, G:0.18, T:0.34
Consensus pattern (44 bp):
AGATAAGATTTGTAGCTTCAATCTGCTCCACTGCAACTTCAAGG
Found at i:7953980 original size:94 final size:94
Alignment explanation
Indices: 7953882--7954066 Score: 237
Period size: 94 Copynumber: 2.0 Consensus size: 94
7953872 ATAAGATTTG
* * * *
7953882 TAGCTTTAATTTACTCCACTGCAACTTCATGGAAATAAGATTCGCTATGATAGA-TTCAATCTGT
1 TAGCTTAAATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTATGAT-GATTTCAATCTGA
* * *
7953946 CCCACTGCGACTTTAGGGGTGTAGGATCTA
65 CCCACTGCAACTTCAAGGGTGTAGGATCTA
* * * * * *
7953976 TAGCTTAAATCTGCTCTACTGCAACTTTAGGGAGATAAGATTTGCTATGGTGATTTCAATCTGAC
1 TAGCTTAAATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTATGATGATTTCAATCTGAC
7954041 CCACTGCAACTTCAAGGGTGTAGGAT
66 CCACTGCAACTTCAAGGGTGTAGGAT
7954067 TTGTGGTTGG
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
93 2 0.03
94 75 0.97
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (94 bp):
TAGCTTAAATCTACTCCACTGCAACTTCAGGGAAATAAGATTCGCTATGATGATTTCAATCTGAC
CCACTGCAACTTCAAGGGTGTAGGATCTA
Found at i:7964641 original size:19 final size:20
Alignment explanation
Indices: 7964603--7964647 Score: 58
Period size: 19 Copynumber: 2.3 Consensus size: 20
7964593 AGGGCCTTTT
*
7964603 ATGAAATTTAATGCATATG-
1 ATGAAATGTAATGCATATGA
7964622 ATGAAATGTAATGC-TAATGA
1 ATGAAATGTAATGCAT-ATGA
7964642 ATGAAA
1 ATGAAA
7964648 AATGAATGCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 1 0.04
19 16 0.70
20 6 0.26
ACGTcount: A:0.47, C:0.04, G:0.18, T:0.31
Consensus pattern (20 bp):
ATGAAATGTAATGCATATGA
Found at i:7975259 original size:17 final size:18
Alignment explanation
Indices: 7975229--7975274 Score: 64
Period size: 18 Copynumber: 2.8 Consensus size: 18
7975219 ATTTAAATTA
7975229 CGGTCGCGGTCGCGTTTT
1 CGGTCGCGGTCGCGTTTT
7975247 CGGTCGC-GTCGCG-TTT
1 CGGTCGCGGTCGCGTTTT
7975263 --GTCGCGGTCGCG
1 CGGTCGCGGTCGCG
7975275 GACATAACGG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
16 3 0.11
17 6 0.22
18 7 0.26
ACGTcount: A:0.00, C:0.30, G:0.41, T:0.28
Consensus pattern (18 bp):
CGGTCGCGGTCGCGTTTT
Found at i:7975599 original size:27 final size:25
Alignment explanation
Indices: 7975545--7975599 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 25
7975535 CAGATGGCCC
* **
7975545 AAAGTAAAAAAATCTAAATATTTTT
1 AAAGTAAAAAAATCTAAATAATCCT
7975570 AAAGTAAAAAAATCTAGATATAATCCT
1 AAAGTAAAAAAATCTA-A-ATAATCCT
7975597 AAA
1 AAA
7975600 AAAAGGCACC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 16 0.64
26 1 0.04
27 8 0.32
ACGTcount: A:0.58, C:0.07, G:0.05, T:0.29
Consensus pattern (25 bp):
AAAGTAAAAAAATCTAAATAATCCT
Found at i:7975784 original size:15 final size:15
Alignment explanation
Indices: 7975766--7975802 Score: 74
Period size: 15 Copynumber: 2.5 Consensus size: 15
7975756 TCTTCCTCTC
7975766 CTGGTTCTTTCTAGT
1 CTGGTTCTTTCTAGT
7975781 CTGGTTCTTTCTAGT
1 CTGGTTCTTTCTAGT
7975796 CTGGTTC
1 CTGGTTC
7975803 ACATAGCTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.05, C:0.22, G:0.22, T:0.51
Consensus pattern (15 bp):
CTGGTTCTTTCTAGT
Found at i:7975923 original size:7 final size:7
Alignment explanation
Indices: 7975911--7975937 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
7975901 TCCCGTTATC
7975911 TTCTTTG
1 TTCTTTG
7975918 TTCTTTG
1 TTCTTTG
7975925 TTCTTTG
1 TTCTTTG
7975932 TTCTTT
1 TTCTTT
7975938 TTCCTTTTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.00, C:0.15, G:0.11, T:0.74
Consensus pattern (7 bp):
TTCTTTG
Found at i:7983185 original size:27 final size:26
Alignment explanation
Indices: 7983136--7983192 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 26
7983126 TTATCAATCA
7983136 TAATGTTTTGTTTAATTTTATAAATAT
1 TAATGTTTTG-TTAATTTTATAAATAT
*
7983163 TAATGTTTTG-TAATTTATAATAAATTT
1 TAATGTTTTGTTAATTT-T-ATAAATAT
7983190 TAA
1 TAA
7983193 ATATTAGGAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
25 6 0.22
26 1 0.04
27 20 0.74
ACGTcount: A:0.37, C:0.00, G:0.07, T:0.56
Consensus pattern (26 bp):
TAATGTTTTGTTAATTTTATAAATAT
Found at i:7989013 original size:3 final size:3
Alignment explanation
Indices: 7989005--7989038 Score: 50
Period size: 3 Copynumber: 11.3 Consensus size: 3
7988995 AACCTGGAAC
* *
7989005 AAG AAG AAG AAG AAG AAG AAG AAG CAG AAT AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG AAG A
7989039 GAAAAGGGTT
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.65, C:0.03, G:0.29, T:0.03
Consensus pattern (3 bp):
AAG
Found at i:7994352 original size:27 final size:27
Alignment explanation
Indices: 7994294--7994380 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
7994284 TTTTACATAA
*
7994294 TTATATATTTTTATAAATTTATAGTTT
1 TTATATATATTTATAAATTTATAGTTT
* * *
7994321 ATATATATATTTATAATTTTTTA-TTT
1 TTATATATATTTATAAATTTATAGTTT
* * ** *
7994347 TT-TATAAAGTTATATGTTTATTGTTT
1 TTATATATATTTATAAATTTATAGTTT
7994373 TTATATAT
1 TTATATAT
7994381 TTTCAAGATA
Statistics
Matches: 46, Mismatches: 12, Indels: 4
0.74 0.19 0.06
Matches are distributed among these distances:
25 14 0.30
26 9 0.20
27 23 0.50
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (27 bp):
TTATATATATTTATAAATTTATAGTTT
Found at i:7998764 original size:24 final size:24
Alignment explanation
Indices: 7998714--7998765 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
7998704 TTCGTAGGTC
* *
7998714 AAATAAATTATGCTAATAAATGCT
1 AAATAAATTATACTAATAAATACT
* *
7998738 AAATATATTATACTAATAAATATT
1 AAATAAATTATACTAATAAATACT
7998762 AAAT
1 AAAT
7998766 CTTCTAAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.54, C:0.06, G:0.04, T:0.37
Consensus pattern (24 bp):
AAATAAATTATACTAATAAATACT
Found at i:8002717 original size:16 final size:16
Alignment explanation
Indices: 8002696--8002728 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
8002686 TTCGCTGTAT
8002696 TGGAATAGAGGCGTAA
1 TGGAATAGAGGCGTAA
*
8002712 TGGAATAGAGGTGTAA
1 TGGAATAGAGGCGTAA
8002728 T
1 T
8002729 AGCAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.36, C:0.03, G:0.36, T:0.24
Consensus pattern (16 bp):
TGGAATAGAGGCGTAA
Found at i:8002812 original size:39 final size:43
Alignment explanation
Indices: 8002708--8002816 Score: 129
Period size: 45 Copynumber: 2.6 Consensus size: 43
8002698 GAATAGAGGC
8002708 GTAATGGAATAGAGGTGTAATAGCAAATCAATTGTTTGGTTGAAT
1 GTAATGGAATAGAGGTGTAATAGCAAATCAATTGTTTGGTT--AT
* * *
8002753 GTAATGGAATAGAGGCGTAATAG-TATTC-ATGTGTTTGG-T-T
1 GTAATGGAATAGAGGTGTAATAGCAAATCAAT-TGTTTGGTTAT
8002793 G-AATGGAATAGAGGTGTAATAGCA
1 GTAATGGAATAGAGGTGTAATAGCA
8002817 TAATGGAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
39 20 0.35
40 2 0.04
43 3 0.05
44 10 0.18
45 22 0.39
ACGTcount: A:0.34, C:0.05, G:0.29, T:0.32
Consensus pattern (43 bp):
GTAATGGAATAGAGGTGTAATAGCAAATCAATTGTTTGGTTAT
Found at i:8003058 original size:20 final size:19
Alignment explanation
Indices: 8003021--8003059 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
8003011 CTATTTTTTT
*
8003021 AATTTTTTTTGTAAATTTA
1 AATTTTTTTTATAAATTTA
*
8003040 AATTTTTTTATATATATTTA
1 AATTTTTTT-TATAAATTTA
8003060 TAATGGTCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (19 bp):
AATTTTTTTTATAAATTTA
Found at i:8009792 original size:34 final size:34
Alignment explanation
Indices: 8009744--8009816 Score: 119
Period size: 34 Copynumber: 2.1 Consensus size: 34
8009734 CCGTTTTTAA
* *
8009744 TAGGGTTAGGGTTTTGTTTATTAAAATTAGGGTT
1 TAGGGTTAGAGTTTTGTTTATTAAAAGTAGGGTT
*
8009778 TAGGGTTAGAGTTTTGTTTATTTAAAGTAGGGTT
1 TAGGGTTAGAGTTTTGTTTATTAAAAGTAGGGTT
8009812 TAGGG
1 TAGGG
8009817 GTTTTTTATA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.23, C:0.00, G:0.32, T:0.45
Consensus pattern (34 bp):
TAGGGTTAGAGTTTTGTTTATTAAAAGTAGGGTT
Found at i:8010440 original size:40 final size:40
Alignment explanation
Indices: 8010359--8010444 Score: 118
Period size: 40 Copynumber: 2.1 Consensus size: 40
8010349 ATTGGGGAAA
* * ***
8010359 TGCTGACTTGGCGGAAAGTGCTTCCTGCTGGAAGTGTTTT
1 TGCTGACTTGACGGAAAGAGCTTCCTGCTGGAAGCACTTT
*
8010399 TGCTGACTTGACGGAAAGAGCTTCTTGCTGGAAGCACTTT
1 TGCTGACTTGACGGAAAGAGCTTCCTGCTGGAAGCACTTT
8010439 TGCTGA
1 TGCTGA
8010445 AAAATGGCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.19, C:0.19, G:0.30, T:0.33
Consensus pattern (40 bp):
TGCTGACTTGACGGAAAGAGCTTCCTGCTGGAAGCACTTT
Found at i:8010697 original size:16 final size:16
Alignment explanation
Indices: 8010644--8010691 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 16
8010634 CTAATCTTAC
8010644 TATTTAATTATATTATAT
1 TATTTAATT-TA-TATAT
*
8010662 TATTTTATTTTATATAT
1 TA-TTTAATTTATATAT
8010679 TATTTAATTTATA
1 TATTTAATTTATA
8010692 ACTTATAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
16 10 0.37
17 7 0.26
18 4 0.15
19 6 0.22
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (16 bp):
TATTTAATTTATATAT
Found at i:8011155 original size:91 final size:87
Alignment explanation
Indices: 8011010--8011188 Score: 297
Period size: 91 Copynumber: 2.0 Consensus size: 87
8011000 GTCCTCAAAG
8011010 ACTTCTACTTTAAATTTCAATTTTTTTTTAATTCGTACAAGGTTGGGTGAACCAATTTTACTT-T
1 ACTTCTACTTTAAATTTCAATTTTTTTTTAATTCGTACAAGGTTGGGTGAACCAATTTTA-TTAT
8011074 TTTCAACCATAACGTGGGAATCA
65 TTTCAACCATAACGTGGGAATCA
*
8011097 ACTTCTACTTTAAATTTCAAATTTTTCTTTTAAAATTCGTACAAGTTTGGGTGAACCAATTTTAT
1 ACTTCTACTTTAAATTTC-AATTTTT-TTTT--AATTCGTACAAGGTTGGGTGAACCAATTTTAT
8011162 TATTTTCAACCATAACGTGGGAATCA
62 TATTTTCAACCATAACGTGGGAATCA
8011188 A
1 A
8011189 AATATTATGA
Statistics
Matches: 86, Mismatches: 1, Indels: 6
0.92 0.01 0.06
Matches are distributed among these distances:
87 18 0.21
88 7 0.08
89 4 0.05
90 2 0.02
91 55 0.64
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.42
Consensus pattern (87 bp):
ACTTCTACTTTAAATTTCAATTTTTTTTTAATTCGTACAAGGTTGGGTGAACCAATTTTATTATT
TTCAACCATAACGTGGGAATCA
Found at i:8014090 original size:20 final size:19
Alignment explanation
Indices: 8014051--8014090 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
8014041 AGGTAAGGAG
*
8014051 AATTTATTTTCTAAGTATA
1 AATTTATTTTCTAAGAATA
*
8014070 AATTCTATTTTCTGAGAATA
1 AATT-TATTTTCTAAGAATA
8014090 A
1 A
8014091 TAATTCTCTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.38, C:0.07, G:0.07, T:0.47
Consensus pattern (19 bp):
AATTTATTTTCTAAGAATA
Found at i:8033952 original size:3 final size:3
Alignment explanation
Indices: 8033946--8033994 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
8033936 GAAGAATAGG
* * *
8033946 AGA AGA AGA ATA A-A AGA AGA AG- AGG AGA AAA AGA AGA AGA AGA A-A
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
8033991 AGA A
1 AGA A
8033995 AATGGAGGAG
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
2 6 0.15
3 33 0.85
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (3 bp):
AGA
Found at i:8033954 original size:14 final size:14
Alignment explanation
Indices: 8033935--8033980 Score: 53
Period size: 14 Copynumber: 3.5 Consensus size: 14
8033925 TTAGGTAAAT
8033935 AGAAGAATAGGAGA
1 AGAAGAATAGGAGA
8033949 AGAAGAATA--A-A
1 AGAAGAATAGGAGA
*
8033960 AGAAGAAGAGGAGA
1 AGAAGAATAGGAGA
*
8033974 AAAAGAA
1 AGAAGAA
8033981 GAAGAAGAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 9 0.33
12 1 0.04
13 1 0.04
14 16 0.59
ACGTcount: A:0.65, C:0.00, G:0.30, T:0.04
Consensus pattern (14 bp):
AGAAGAATAGGAGA
Found at i:8033966 original size:17 final size:16
Alignment explanation
Indices: 8033946--8033991 Score: 65
Period size: 17 Copynumber: 2.8 Consensus size: 16
8033936 GAAGAATAGG
8033946 AGAAGAAGAATAAAAGA
1 AGAAGAAGAA-AAAAGA
*
8033963 AGAAGAGGAGAAAAAGA
1 AGAAGAAGA-AAAAAGA
8033980 AGAAGAAGAAAA
1 AGAAGAAGAAAA
8033992 GAAAATGGAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
16 3 0.12
17 22 0.85
18 1 0.04
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (16 bp):
AGAAGAAGAAAAAAGA
Found at i:8033991 original size:14 final size:14
Alignment explanation
Indices: 8033946--8033994 Score: 62
Period size: 14 Copynumber: 3.3 Consensus size: 14
8033936 GAAGAATAGG
*
8033946 AGAAGAAGAATAAA
1 AGAAGAAGAAGAAA
8033960 AGAAGAAGAGGAGAAAA
1 AGAAGAAGA--AG-AAA
8033977 AGAAGAAGAAGAAA
1 AGAAGAAGAAGAAA
8033991 AGAA
1 AGAA
8033995 AATGGAGGAG
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
14 16 0.52
15 2 0.06
16 1 0.03
17 12 0.39
ACGTcount: A:0.69, C:0.00, G:0.29, T:0.02
Consensus pattern (14 bp):
AGAAGAAGAAGAAA
Found at i:8035000 original size:19 final size:17
Alignment explanation
Indices: 8034974--8035023 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
8034964 GCTCCTTCCA
*
8034974 TTTTCTCTTCTTCTCCAT
1 TTTTCTCTTATTCTCC-T
*
8034992 TTCTTCTCTTATTCTTCT
1 TT-TTCTCTTATTCTCCT
*
8035010 TTTTCTCTTGTTCT
1 TTTTCTCTTATTCT
8035024 TCTACTACCC
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 11 0.39
18 5 0.18
19 12 0.43
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTCTCTTATTCTCCT
Found at i:8035024 original size:17 final size:17
Alignment explanation
Indices: 8034974--8035026 Score: 61
Period size: 17 Copynumber: 3.0 Consensus size: 17
8034964 GCTCCTTCCA
* *
8034974 TTTTCTCTTCTTCTCCAT
1 TTTTCTCTTATTCTTC-T
8034992 TTCTTCTCTTATTCTTCT
1 TT-TTCTCTTATTCTTCT
*
8035010 TTTTCTCTTGTTCTTCT
1 TTTTCTCTTATTCTTCT
8035027 ACTACCCGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 14 0.45
18 5 0.16
19 12 0.39
ACGTcount: A:0.04, C:0.28, G:0.02, T:0.66
Consensus pattern (17 bp):
TTTTCTCTTATTCTTCT
Found at i:8035759 original size:43 final size:43
Alignment explanation
Indices: 8035671--8035831 Score: 157
Period size: 43 Copynumber: 3.8 Consensus size: 43
8035661 CCACTAAAAG
* *
8035671 TCATGACCTTTAGCGGTGCTTTT-ACAGAAACGCCG-TAATAGA
1 TCATGACCTTTAGCGGCGCTTTTCACACAAACGCCGCT-ATAGA
* *
8035713 TCATGACTTTTAGCGGCGCTTTTCCCACAAACGCCGCTATAGA
1 TCATGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTATAGA
* * * ** *
8035756 TCATCACTTTTAGCGGCACTTTTTCGTACAAACGCTGCTATAGA
1 TCATGACCTTTAGCGGCGC-TTTTCACACAAACGCCGCTATAGA
* * * *
8035800 AC-TAACCTTTAGAGGCGCTTTTTACACAAACG
1 TCATGACCTTTAGCGGCGCTTTTCACACAAACG
8035832 TTGCTAAAAA
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
42 32 0.32
43 44 0.44
44 23 0.23
ACGTcount: A:0.27, C:0.25, G:0.18, T:0.30
Consensus pattern (43 bp):
TCATGACCTTTAGCGGCGCTTTTCACACAAACGCCGCTATAGA
Found at i:8036202 original size:9 final size:9
Alignment explanation
Indices: 8036188--8036218 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8036178 GTTAAACGAA
8036188 TCGAGTTAT
1 TCGAGTTAT
*
8036197 TCGAGTTAA
1 TCGAGTTAT
8036206 TCGAGTTAT
1 TCGAGTTAT
8036215 TCGA
1 TCGA
8036219 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8036289 original size:9 final size:9
Alignment explanation
Indices: 8036272--8036335 Score: 110
Period size: 9 Copynumber: 7.1 Consensus size: 9
8036262 TGAGTTTTCG
8036272 AATTCGAAT
1 AATTCGAAT
*
8036281 AACTCGAAT
1 AATTCGAAT
8036290 AATTCGAAT
1 AATTCGAAT
8036299 AATTCGAAT
1 AATTCGAAT
8036308 AATTCGAAT
1 AATTCGAAT
*
8036317 AATTCAAAT
1 AATTCGAAT
8036326 AATTCGAAT
1 AATTCGAAT
8036335 A
1 A
8036336 TTAAACTATA
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 51 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.31
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8037346 original size:43 final size:43
Alignment explanation
Indices: 8037274--8037364 Score: 121
Period size: 43 Copynumber: 2.1 Consensus size: 43
8037264 CATATTGCAA
* * * *
8037274 GGTAATAAAAAATACAATGCATTTTCTTAATCAAGTAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
* *
8037317 GGTAATAAAAGATATAATACATCTACTTAATCAAGGAAATCTT
1 GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
8037360 -GTAAT
1 GGTAAT
8037365 GAACTCAAAG
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
42 5 0.12
43 37 0.88
ACGTcount: A:0.45, C:0.11, G:0.11, T:0.33
Consensus pattern (43 bp):
GGTAATAAAAAATACAATACATCTACTTAATCAAGGAAATCTT
Found at i:8040703 original size:7 final size:7
Alignment explanation
Indices: 8040691--8040894 Score: 67
Period size: 7 Copynumber: 28.9 Consensus size: 7
8040681 TTTAATTAAT
8040691 CTAAACC
1 CTAAACC
8040698 CTAAACC
1 CTAAACC
*
8040705 C-ATATCC
1 CTA-AACC
8040712 CTTAAACC
1 C-TAAACC
*
8040720 CTAAATC
1 CTAAACC
* *
8040727 ATAAAAC
1 CTAAACC
*
8040734 ATAAACC
1 CTAAACC
8040741 CTAAACCC
1 CTAAA-CC
*
8040749 CT-AGCC
1 CTAAACC
*
8040755 CT-AGCC
1 CTAAACC
*
8040761 CTTAACCC
1 C-TAAACC
8040769 CTAAACC
1 CTAAACC
*
8040776 TTAAACC
1 CTAAACC
*
8040783 TTAAACC
1 CTAAACC
*
8040790 ATAAACC
1 CTAAACC
* * *
8040797 ATAATCT
1 CTAAACC
8040804 CTAAACC
1 CTAAACC
*
8040811 CATAATCC
1 C-TAAACC
* *
8040819 ATAATCC
1 CTAAACC
*
8040826 AT-AACC
1 CTAAACC
* **
8040832 TTAAGATA
1 CTAA-ACC
*
8040840 AT-AACTC
1 CTAAAC-C
8040847 CTAAACC
1 CTAAACC
*
8040854 TTAAACC
1 CTAAACC
*
8040861 CTAAATC
1 CTAAACC
* *
8040868 ATATACC
1 CTAAACC
8040875 CTAAACC
1 CTAAACC
*
8040882 ATAAACC
1 CTAAACC
8040889 CTAAAC
1 CTAAAC
8040895 TATAATGATA
Statistics
Matches: 149, Mismatches: 37, Indels: 22
0.72 0.18 0.11
Matches are distributed among these distances:
6 15 0.10
7 111 0.74
8 22 0.15
9 1 0.01
ACGTcount: A:0.43, C:0.34, G:0.01, T:0.22
Consensus pattern (7 bp):
CTAAACC
Found at i:8040820 original size:22 final size:21
Alignment explanation
Indices: 8040784--8040824 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
8040774 CCTTAAACCT
8040784 TAAACCATAAACCATAATCTC
1 TAAACCATAAACCATAATCTC
*
8040805 TAAACCCATAATCCATAATC
1 TAAA-CCATAAACCATAATC
8040825 CATAACCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 4 0.22
22 14 0.78
ACGTcount: A:0.46, C:0.29, G:0.00, T:0.24
Consensus pattern (21 bp):
TAAACCATAAACCATAATCTC
Found at i:8040863 original size:14 final size:14
Alignment explanation
Indices: 8040770--8040899 Score: 84
Period size: 14 Copynumber: 9.2 Consensus size: 14
8040760 CCTTAACCCC
* *
8040770 TAAACCTTAAACCT
1 TAAACCCTAAACCA
*
8040784 TAAACCATAAACCA
1 TAAACCCTAAACCA
* *
8040798 TAATCTCTAAACCCA
1 TAAACCCTAAA-CCA
* * *
8040813 TAATCCATAATCCA
1 TAAACCCTAAACCA
* **
8040827 T-AACCTTAAGATAA
1 TAAACCCTAA-ACCA
*
8040841 T-AACTCCTAAACCT
1 TAAAC-CCTAAACCA
*
8040855 TAAACCCTAAATCA
1 TAAACCCTAAACCA
*
8040869 TATACCCTAAACCA
1 TAAACCCTAAACCA
*
8040883 TAAACCCTAAACTA
1 TAAACCCTAAACCA
8040897 TAA
1 TAA
8040900 TGATAATTAA
Statistics
Matches: 89, Mismatches: 23, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
13 6 0.07
14 65 0.73
15 18 0.20
ACGTcount: A:0.46, C:0.28, G:0.01, T:0.25
Consensus pattern (14 bp):
TAAACCCTAAACCA
Found at i:8040969 original size:20 final size:21
Alignment explanation
Indices: 8040944--8040985 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
8040934 ACTAGTTAAT
*
8040944 CTAAACCCT-AAACTATAAAC
1 CTAAACCCTAAAACCATAAAC
8040964 CTAAACCCTAAAACCATAAAC
1 CTAAACCCTAAAACCATAAAC
8040985 C
1 C
8040986 CTTAACACAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (21 bp):
CTAAACCCTAAAACCATAAAC
Found at i:8041014 original size:15 final size:15
Alignment explanation
Indices: 8040943--8041076 Score: 56
Period size: 14 Copynumber: 9.4 Consensus size: 15
8040933 CACTAGTTAA
*
8040943 TCTAAACCCTAAA-C
1 TCTAAACCATAAACC
*
8040957 TATAAACC-TAAACC
1 TCTAAACCATAAACC
8040971 -CTAAAACCATAAACC
1 TCT-AAACCATAAACC
*
8040986 -CTTAACACAT-AACC
1 TCTAAAC-CATAAACC
*
8041000 TCTAAACCTTAAACC
1 TCTAAACCATAAACC
* * *
8041015 GC--AGCCTTTAAACC
1 TCTAAACC-ATAAACC
*
8041029 -ATAAACCATAAACC
1 TCTAAACCATAAACC
* *
8041043 -ATAACCCATAAACC
1 TCTAAACCATAAACC
*
8041057 -CATAATCCATAAACC
1 TC-TAAACCATAAACC
8041072 T-TAAA
1 TCTAAA
8041077 ATGGTAATAC
Statistics
Matches: 95, Mismatches: 14, Indels: 22
0.73 0.11 0.17
Matches are distributed among these distances:
13 8 0.08
14 51 0.54
15 36 0.38
ACGTcount: A:0.46, C:0.32, G:0.01, T:0.20
Consensus pattern (15 bp):
TCTAAACCATAAACC
Found at i:8041033 original size:7 final size:7
Alignment explanation
Indices: 8041023--8041076 Score: 72
Period size: 7 Copynumber: 7.6 Consensus size: 7
8041013 CCGCAGCCTT
8041023 TAAACCA
1 TAAACCA
8041030 TAAACCA
1 TAAACCA
8041037 TAAACCA
1 TAAACCA
*
8041044 TAACCCA
1 TAAACCA
8041051 TAAACCCA
1 TAAA-CCA
*
8041059 TAATCCA
1 TAAACCA
*
8041066 TAAACCT
1 TAAACCA
8041073 TAAA
1 TAAA
8041077 ATGGTAATAC
Statistics
Matches: 41, Mismatches: 5, Indels: 2
0.85 0.10 0.04
Matches are distributed among these distances:
7 35 0.85
8 6 0.15
ACGTcount: A:0.52, C:0.30, G:0.00, T:0.19
Consensus pattern (7 bp):
TAAACCA
Found at i:8041066 original size:22 final size:21
Alignment explanation
Indices: 8041027--8041068 Score: 66
Period size: 22 Copynumber: 2.0 Consensus size: 21
8041017 AGCCTTTAAA
8041027 CCATAAACCATAAACCATAAC
1 CCATAAACCATAAACCATAAC
*
8041048 CCATAAACCCATAATCCATAA
1 CCATAAA-CCATAAACCATAA
8041069 ACCTTAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.50, C:0.33, G:0.00, T:0.17
Consensus pattern (21 bp):
CCATAAACCATAAACCATAAC
Found at i:8041076 original size:22 final size:21
Alignment explanation
Indices: 8041023--8041121 Score: 65
Period size: 22 Copynumber: 4.6 Consensus size: 21
8041013 CCGCAGCCTT
* ** *
8041023 TAAACCATAAACCATAAACCA
1 TAAACCTTAAACTCTAATCCA
* * *
8041044 TAACCCATAAACCCATAATCCA
1 TAAACCTTAAACTC-TAATCCA
* *
8041066 TAAACCTTAAAATGGTAATACC-
1 TAAACCTTAAACT-CTAAT-CCA
*
8041088 TAAACCTTAAACTCTAAACCA
1 TAAACCTTAAACTCTAATCCA
*
8041109 TATACCTTAAACT
1 TAAACCTTAAACT
8041122 AAAAACCCTA
Statistics
Matches: 62, Mismatches: 12, Indels: 8
0.76 0.15 0.10
Matches are distributed among these distances:
20 2 0.03
21 27 0.44
22 31 0.50
23 2 0.03
ACGTcount: A:0.47, C:0.27, G:0.02, T:0.23
Consensus pattern (21 bp):
TAAACCTTAAACTCTAATCCA
Found at i:8041725 original size:39 final size:39
Alignment explanation
Indices: 8041657--8041772 Score: 101
Period size: 39 Copynumber: 2.9 Consensus size: 39
8041647 GCGCTTCCTG
* * * *
8041657 AAAAA-CGCCGCTTATCCTCTATTTGTAGCGGCGTTTTTA
1 AAAAAGCGCCGCTAATGCTCTAATT-TAGCGGCGTTTTCA
* ** *
8041696 AAAAAGTGCCGCTAATGCTCTAATTTAGCGATGTTTTCC
1 AAAAAGCGCCGCTAATGCTCTAATTTAGCGGCGTTTTCA
* *
8041735 TAAGAGCGCCGCTAATGCTC-AATTTTTAGCGGCGTTTT
1 AAAAAGCGCCGCTAATGCTCTAA--TTTAGCGGCGTTTT
8041773 ATGTCCAAAC
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.52
40 27 0.44
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (39 bp):
AAAAAGCGCCGCTAATGCTCTAATTTAGCGGCGTTTTCA
Found at i:8042946 original size:39 final size:39
Alignment explanation
Indices: 8042878--8042993 Score: 101
Period size: 39 Copynumber: 2.9 Consensus size: 39
8042868 GCGCTTCCTG
* * * *
8042878 AAAAA-CGCCGCTTATCCTCTATTTGTAGCGGCGTTTTTA
1 AAAAAGCGCCGCTAATGCTCTAATT-TAGCGGCGTTTTCA
* ** *
8042917 AAAAAGTGCCGCTAATGCTCTAATTTAGCGATGTTTTCC
1 AAAAAGCGCCGCTAATGCTCTAATTTAGCGGCGTTTTCA
* *
8042956 TAAGAGCGCCGCTAATGCTC-AATTTTTAGCGGCGTTTT
1 AAAAAGCGCCGCTAATGCTCTAA--TTTAGCGGCGTTTT
8042994 ATGTCCAAAC
Statistics
Matches: 61, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
38 2 0.03
39 32 0.52
40 27 0.44
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (39 bp):
AAAAAGCGCCGCTAATGCTCTAATTTAGCGGCGTTTTCA
Found at i:8044924 original size:917 final size:917
Alignment explanation
Indices: 8043150--8044984 Score: 3670
Period size: 917 Copynumber: 2.0 Consensus size: 917
8043140 TCTAAAAGAA
8043150 ACTCTAGAGAAATTCTTAAAAAGAAAAACCCAGAGAGAATTTATTAACTCAAAAGAGACATAAAA
1 ACTCTAGAGAAATTCTTAAAAAGAAAAACCCAGAGAGAATTTATTAACTCAAAAGAGACATAAAA
8043215 TAATAATGAATTGAATGAATTGTATATAATGTAAAGACCTATTTATAGGCTAGCTAAATAAATCT
66 TAATAATGAATTGAATGAATTGTATATAATGTAAAGACCTATTTATAGGCTAGCTAAATAAATCT
8043280 AAATAAAAATCTTAAGTATACTAGAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAA
131 AAATAAAAATCTTAAGTATACTAGAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAA
8043345 TTTTCTTGTTAACATAAAACTCCTAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAAT
196 TTTTCTTGTTAACATAAAACTCCTAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAAT
8043410 AAAATAATAATAAAATAATAAGATCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAG
261 AAAATAATAATAAAATAATAAGATCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAG
8043475 TCTAAAACCCAAACCCAATATAATTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCA
326 TCTAAAACCCAAACCCAATATAATTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCA
8043540 TAATCCCTTTCAGAAATTCTGCTTGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAA
391 TAATCCCTTTCAGAAATTCTGCTTGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAA
8043605 CTCAAAATCGAGTGATTCAAAATGCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGAC
456 CTCAAAATCGAGTGATTCAAAATGCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGAC
8043670 ATCTCAATCCAAAAATGCTAGGATCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGT
521 ATCTCAATCCAAAAATGCTAGGATCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGT
8043735 CTGAAAATTGGCAGTTTTGATGATTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATT
586 CTGAAAATTGGCAGTTTTGATGATTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATT
8043800 CTCCCTTTCCTCAAAAAGATTCGTCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCT
651 CTCCCTTTCCTCAAAAAGATTCGTCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCT
8043865 TAGCCTTTGACATTGTTGTTGGGCCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAAT
716 TAGCCTTTGACATTGTTGTTGGGCCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAAT
8043930 TGCGCATCAATTAAATTGTTTAAGTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAAT
781 TGCGCATCAATTAAATTGTTTAAGTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAAT
8043995 ATTAAAATAAAAATAATATAAATAATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATAT
846 ATTAAAATAAAAATAATATAAATAATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATAT
8044060 GATACTT
911 GATACTT
8044067 ACTCTAGAGAAATTCTTAAAAAGAAAAACCCAGAGAGAATTTATTAACTCAAAAGAGACATAAAA
1 ACTCTAGAGAAATTCTTAAAAAGAAAAACCCAGAGAGAATTTATTAACTCAAAAGAGACATAAAA
8044132 TAATAATGAATTGAATGAATTGTATATAATGTAAAGACCTATTTATAGGCTAGCTAAATAAATCT
66 TAATAATGAATTGAATGAATTGTATATAATGTAAAGACCTATTTATAGGCTAGCTAAATAAATCT
8044197 AAATAAAAATCTTAAGTATACTAGAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAA
131 AAATAAAAATCTTAAGTATACTAGAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAA
8044262 TTTTCTTGTTAACATAAAACTCCTAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAAT
196 TTTTCTTGTTAACATAAAACTCCTAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAAT
8044327 AAAATAATAATAAAATAATAAGATCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAG
261 AAAATAATAATAAAATAATAAGATCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAG
8044392 TCTAAAACCCAAACCCAATATAATTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCA
326 TCTAAAACCCAAACCCAATATAATTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCA
8044457 TAATCCCTTTCAGAAATTCTGCTTGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAA
391 TAATCCCTTTCAGAAATTCTGCTTGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAA
8044522 CTCAAAATCGAGTGATTCAAAATGCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGAC
456 CTCAAAATCGAGTGATTCAAAATGCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGAC
8044587 ATCTCAATCCAAAAATGCTAGGATCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGT
521 ATCTCAATCCAAAAATGCTAGGATCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGT
8044652 CTGAAAATTGGCAGTTTTGATGATTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATT
586 CTGAAAATTGGCAGTTTTGATGATTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATT
8044717 CTCCCTTTCCTCAAAAAGATTCGTCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCT
651 CTCCCTTTCCTCAAAAAGATTCGTCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCT
8044782 TAGCCTTTGACATTGTTGTTGGGCCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAAT
716 TAGCCTTTGACATTGTTGTTGGGCCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAAT
8044847 TGCGCATCAATTAAATTGTTTAAGTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAAT
781 TGCGCATCAATTAAATTGTTTAAGTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAAT
8044912 ATTAAAATAAAAATAATATAAATAATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATAT
846 ATTAAAATAAAAATAATATAAATAATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATAT
8044977 GATACTT
911 GATACTT
8044984 A
1 A
8044985 AGTCTGACCT
Statistics
Matches: 918, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
917 918 1.00
ACGTcount: A:0.41, C:0.15, G:0.12, T:0.32
Consensus pattern (917 bp):
ACTCTAGAGAAATTCTTAAAAAGAAAAACCCAGAGAGAATTTATTAACTCAAAAGAGACATAAAA
TAATAATGAATTGAATGAATTGTATATAATGTAAAGACCTATTTATAGGCTAGCTAAATAAATCT
AAATAAAAATCTTAAGTATACTAGAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAA
TTTTCTTGTTAACATAAAACTCCTAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAAT
AAAATAATAATAAAATAATAAGATCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAG
TCTAAAACCCAAACCCAATATAATTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCA
TAATCCCTTTCAGAAATTCTGCTTGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAA
CTCAAAATCGAGTGATTCAAAATGCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGAC
ATCTCAATCCAAAAATGCTAGGATCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGT
CTGAAAATTGGCAGTTTTGATGATTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATT
CTCCCTTTCCTCAAAAAGATTCGTCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCT
TAGCCTTTGACATTGTTGTTGGGCCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAAT
TGCGCATCAATTAAATTGTTTAAGTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAAT
ATTAAAATAAAAATAATATAAATAATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATAT
GATACTT
Found at i:8045654 original size:793 final size:794
Alignment explanation
Indices: 8044220--8045806 Score: 3140
Period size: 793 Copynumber: 2.0 Consensus size: 794
8044210 AAGTATACTA
8044220 GAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAATTTTCTTGTTAACATAAAACTCC
1 GAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAATTTTCTTGTTAACATAAAACTCC
8044285 TAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAATAAAATAATAATAAAATAATAAGA
66 TAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAATAAAATAATAATAAAATAATAAGA
8044350 TCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAGTCTAAAACCCAAACCCAATATAA
131 TCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAGTCTAAAACCCAAACCCAATATAA
8044415 TTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCATAATCCCTTTCAGAAATTCTGCT
196 TTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCATAATCCCTTTCAGAAATTCTGCT
8044480 TGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAACTCAAAATCGAGTGATTCAAAAT
261 TGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAACTCAAAATCGAGTGATTCAAAAT
8044545 GCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGACATCTCAATCCAAAAATGCTAGGA
326 GCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGACATCTCAATCCAAAAATGCTAGGA
8044610 TCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGTCTGAAAATTGGCAGTTTTGATGA
391 TCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGTCTGAAAATTGGCAGTTTTGATGA
8044675 TTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATTCTCCCTTTCCTCAAAAAGATTCG
456 TTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATTCTCCCTTTCCTCAAAAAGATTCG
8044740 TCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCTTAGCCTTTGACATTGTTGTTGGG
521 TCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCTTAGCCTTTGACATTGTTGTTGGG
8044805 CCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAATTGCGCATCAATTAAATTGTTTAA
586 CCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAATTGCGCATCAATTAAATTGTTTAA
8044870 GTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAATATTAAAATAAAAATAATATAAAT
651 GTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAATATTAAAATAAAAATAATATAAAT
8044935 AATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATATGATACTTAAGTCTGACCTAGCTC
716 AATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATATGATACTTAAGTCTGACCTAGCTC
*
8045000 ATGAGTTCGAAATT
781 ATGAGTTCAAAATT
*
8045014 GAACTCTAATTTAATCTAAACAAGAAGTAG-TTTAAACTAAATTTTCTTGTTAACATAAAACTCT
1 GAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAATTTTCTTGTTAACATAAAACTCC
*
8045078 TAAATAACTTAAAATGCTTAATAATTATAAAAAATTTGGAATAAAATAATAATAAAATAATAAGA
66 TAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAATAAAATAATAATAAAATAATAAGA
8045143 TCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAGTCTAAAACCCAAACCCAATATAA
131 TCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAGTCTAAAACCCAAACCCAATATAA
8045208 TTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCATAATCCCTTTCAGAAATTCTGCT
196 TTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCATAATCCCTTTCAGAAATTCTGCT
8045273 TGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAACTCAAAATCGAGTGATTCAAAAT
261 TGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAACTCAAAATCGAGTGATTCAAAAT
8045338 GCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGACATCTCAATCCAAAAATGCTAGGA
326 GCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGACATCTCAATCCAAAAATGCTAGGA
8045403 TCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGTCTGAAAATTGGCAGTTTTGATGA
391 TCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGTCTGAAAATTGGCAGTTTTGATGA
8045468 TTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATTCTCCCTTTCCTCAAAAAGATTCG
456 TTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATTCTCCCTTTCCTCAAAAAGATTCG
8045533 TCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCTTAGCCTTTGACATTGTTGTTGGG
521 TCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCTTAGCCTTTGACATTGTTGTTGGG
8045598 CCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAATTGCGCATCAATTAAATTGTTTAA
586 CCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAATTGCGCATCAATTAAATTGTTTAA
8045663 GTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAATATTAAAATAAAAATAATATAAAT
651 GTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAATATTAAAATAAAAATAATATAAAT
8045728 AATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATATGATACTTAAGTCTGACCTAGCTC
716 AATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATATGATACTTAAGTCTGACCTAGCTC
8045793 ATGAGTTCAAAATT
781 ATGAGTTCAAAATT
8045807 TTTAAAATTT
Statistics
Matches: 790, Mismatches: 3, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
793 760 0.96
794 30 0.04
ACGTcount: A:0.39, C:0.17, G:0.12, T:0.33
Consensus pattern (794 bp):
GAACTCTAATTTAATCTAAACAAGAAGTAGTTTTAAACTAAATTTTCTTGTTAACATAAAACTCC
TAAATAACTTAAAATACTTAATAATTATAAAAAATTTGGAATAAAATAATAATAAAATAATAAGA
TCTGACAAATATAATATTGGGCTCATATATAACAAAATTAAGTCTAAAACCCAAACCCAATATAA
TTTAAACTCGAATTAAAAGCTCGAAATTCGTAATTCCCGTCATAATCCCTTTCAGAAATTCTGCT
TGCCCAGTCTTCACTAAACCGGTCATAACTTGATCTCCCGAACTCAAAATCGAGTGATTCAAAAT
GCGTTTCGAAGCTAAGAGATAGATCTTCAAATGTCATACGACATCTCAATCCAAAAATGCTAGGA
TCCCATCCAAAAAGTCGTCAAAAGTCTGTTGATTTCCCAAGTCTGAAAATTGGCAGTTTTGATGA
TTGGAATTTAATAAATTTCACCCCATTCGTGCATGTATCATTCTCCCTTTCCTCAAAAAGATTCG
TCCTCGAATCTTATCTTTGATCGAGTCCTGATTTGATTTGCTTAGCCTTTGACATTGTTGTTGGG
CCTTGAGGTAGTGTGAACCCATCACATTTATAGGTCTGAAATTGCGCATCAATTAAATTGTTTAA
GTAAAATATTTTAATAAATAAAAATATATAAAATTATTAAATATTAAAATAAAAATAATATAAAT
AATTTTCAAAAAAAAATAAACAAACTTAATATATGTTAATATGATACTTAAGTCTGACCTAGCTC
ATGAGTTCAAAATT
Found at i:8046166 original size:21 final size:20
Alignment explanation
Indices: 8046142--8046180 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
8046132 AACGATTTCT
*
8046142 TTGTTGTATATATATTTTTAA
1 TTGTTGCATATAT-TTTTTAA
8046163 TTGTTGCATATATTTTTT
1 TTGTTGCATATATTTTTT
8046181 CACTAAATGT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.23, C:0.03, G:0.10, T:0.64
Consensus pattern (20 bp):
TTGTTGCATATATTTTTTAA
Found at i:8050083 original size:31 final size:31
Alignment explanation
Indices: 8050045--8050103 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
8050035 ATTTAATGGA
* *
8050045 GAGTGACCCAAATAGAAATGATCTAAAACAT
1 GAGTGACCAAAATAAAAATGATCTAAAACAT
*
8050076 GAGTGACCAAAATAAAAATTATCTAAAA
1 GAGTGACCAAAATAAAAATGATCTAAAA
8050104 ATTTAGTGGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.53, C:0.14, G:0.14, T:0.20
Consensus pattern (31 bp):
GAGTGACCAAAATAAAAATGATCTAAAACAT
Found at i:8050604 original size:19 final size:20
Alignment explanation
Indices: 8050559--8050597 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8050549 AATAGAATTG
*
8050559 TTATACCTAGAAAATGAAAT
1 TTATACTTAGAAAATGAAAT
8050579 TTATACTTAGAAAAT-AAAT
1 TTATACTTAGAAAATGAAAT
8050598 GTTTACTATT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.22
20 14 0.78
ACGTcount: A:0.51, C:0.08, G:0.08, T:0.33
Consensus pattern (20 bp):
TTATACTTAGAAAATGAAAT
Found at i:8051534 original size:17 final size:17
Alignment explanation
Indices: 8051512--8051544 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
8051502 TAGAATTGGG
8051512 TTGAGAAAATAAATTAA
1 TTGAGAAAATAAATTAA
*
8051529 TTGAGAAATTAAATTA
1 TTGAGAAAATAAATTA
8051545 GTTAAATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (17 bp):
TTGAGAAAATAAATTAA
Found at i:8063650 original size:27 final size:27
Alignment explanation
Indices: 8063609--8063674 Score: 105
Period size: 27 Copynumber: 2.4 Consensus size: 27
8063599 GACATTGTGT
*
8063609 ATCACATGGGCCGCATATTCAACATCA
1 ATCACATGGGTCGCATATTCAACATCA
*
8063636 ATCACATGGGTCGCATATTCAACATCC
1 ATCACATGGGTCGCATATTCAACATCA
*
8063663 ATCACGTGGGTC
1 ATCACATGGGTC
8063675 CAATGTTAAA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (27 bp):
ATCACATGGGTCGCATATTCAACATCA
Found at i:8067389 original size:425 final size:425
Alignment explanation
Indices: 8066599--8067448 Score: 1700
Period size: 425 Copynumber: 2.0 Consensus size: 425
8066589 GCTGGGGCAC
8066599 TACAGTATGTCACTCTTACGCGACCTGATGTTGCATATGCTGTAAATCGAATATGTCAGTTTATG
1 TACAGTATGTCACTCTTACGCGACCTGATGTTGCATATGCTGTAAATCGAATATGTCAGTTTATG
8066664 CATTGTCCCACTTCTGTTCATATGACGGCTCTAAAGCGTATTTTGAGGTATCTAGGTGGAACGAT
66 CATTGTCCCACTTCTGTTCATATGACGGCTCTAAAGCGTATTTTGAGGTATCTAGGTGGAACGAT
8066729 TGAATTTGGGATTGTGTTTCGTCTGTCCACTAATTTGTCCTTAGTTGGGTATGCTGATGCAAACT
131 TGAATTTGGGATTGTGTTTCGTCTGTCCACTAATTTGTCCTTAGTTGGGTATGCTGATGCAAACT
8066794 GGGGGTTAAATTTTGATGACCGGAGGTCTACTACTGGGTACTGTGTCTATTTCGGGTGTAATCCT
196 GGGGGTTAAATTTTGATGACCGGAGGTCTACTACTGGGTACTGTGTCTATTTCGGGTGTAATCCT
8066859 ATGTCATGGTGTACAAAGAAACAACAGGCTGTTGCTCGGTCTACTGCTGAGGCAGAATACAGGAG
261 ATGTCATGGTGTACAAAGAAACAACAGGCTGTTGCTCGGTCTACTGCTGAGGCAGAATACAGGAG
8066924 CCTTGCTGCGGTCACTAGTGAGGTTACATGGCTTTTGTCGTTACTTCAAGAATTACATGTTTAGT
326 CCTTGCTGCGGTCACTAGTGAGGTTACATGGCTTTTGTCGTTACTTCAAGAATTACATGTTTAGT
8066989 CGTCTAGTATTCCAAATATTTGGTGTGATAGTTCT
391 CGTCTAGTATTCCAAATATTTGGTGTGATAGTTCT
8067024 TACAGTATGTCACTCTTACGCGACCTGATGTTGCATATGCTGTAAATCGAATATGTCAGTTTATG
1 TACAGTATGTCACTCTTACGCGACCTGATGTTGCATATGCTGTAAATCGAATATGTCAGTTTATG
8067089 CATTGTCCCACTTCTGTTCATATGACGGCTCTAAAGCGTATTTTGAGGTATCTAGGTGGAACGAT
66 CATTGTCCCACTTCTGTTCATATGACGGCTCTAAAGCGTATTTTGAGGTATCTAGGTGGAACGAT
8067154 TGAATTTGGGATTGTGTTTCGTCTGTCCACTAATTTGTCCTTAGTTGGGTATGCTGATGCAAACT
131 TGAATTTGGGATTGTGTTTCGTCTGTCCACTAATTTGTCCTTAGTTGGGTATGCTGATGCAAACT
8067219 GGGGGTTAAATTTTGATGACCGGAGGTCTACTACTGGGTACTGTGTCTATTTCGGGTGTAATCCT
196 GGGGGTTAAATTTTGATGACCGGAGGTCTACTACTGGGTACTGTGTCTATTTCGGGTGTAATCCT
8067284 ATGTCATGGTGTACAAAGAAACAACAGGCTGTTGCTCGGTCTACTGCTGAGGCAGAATACAGGAG
261 ATGTCATGGTGTACAAAGAAACAACAGGCTGTTGCTCGGTCTACTGCTGAGGCAGAATACAGGAG
8067349 CCTTGCTGCGGTCACTAGTGAGGTTACATGGCTTTTGTCGTTACTTCAAGAATTACATGTTTAGT
326 CCTTGCTGCGGTCACTAGTGAGGTTACATGGCTTTTGTCGTTACTTCAAGAATTACATGTTTAGT
8067414 CGTCTAGTATTCCAAATATTTGGTGTGATAGTTCT
391 CGTCTAGTATTCCAAATATTTGGTGTGATAGTTCT
8067449 GGTGCAGTTG
Statistics
Matches: 425, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
425 425 1.00
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (425 bp):
TACAGTATGTCACTCTTACGCGACCTGATGTTGCATATGCTGTAAATCGAATATGTCAGTTTATG
CATTGTCCCACTTCTGTTCATATGACGGCTCTAAAGCGTATTTTGAGGTATCTAGGTGGAACGAT
TGAATTTGGGATTGTGTTTCGTCTGTCCACTAATTTGTCCTTAGTTGGGTATGCTGATGCAAACT
GGGGGTTAAATTTTGATGACCGGAGGTCTACTACTGGGTACTGTGTCTATTTCGGGTGTAATCCT
ATGTCATGGTGTACAAAGAAACAACAGGCTGTTGCTCGGTCTACTGCTGAGGCAGAATACAGGAG
CCTTGCTGCGGTCACTAGTGAGGTTACATGGCTTTTGTCGTTACTTCAAGAATTACATGTTTAGT
CGTCTAGTATTCCAAATATTTGGTGTGATAGTTCT
Found at i:8074185 original size:30 final size:30
Alignment explanation
Indices: 8074122--8074184 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
8074112 AGTCTCTAAC
*
8074122 TTTATAACTTTTAAAGGATTAAATTAAATT
1 TTTATAACTTTTAAAGGATAAAATTAAATT
8074152 TTTATAA-TTTTAAGGAGGATAAAATGT-AATT
1 TTTATAACTTTTAA--AGGATAAAAT-TAAATT
8074183 TT
1 TT
8074185 ACCTTTACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
29 6 0.21
30 7 0.24
31 15 0.52
32 1 0.03
ACGTcount: A:0.41, C:0.02, G:0.11, T:0.46
Consensus pattern (30 bp):
TTTATAACTTTTAAAGGATAAAATTAAATT
Found at i:8075587 original size:4 final size:4
Alignment explanation
Indices: 8075578--8075611 Score: 59
Period size: 4 Copynumber: 8.5 Consensus size: 4
8075568 GGATTTGGAG
*
8075578 TCTA TCTA TCTA TCTA TTTA TCTA TCTA TCTA TC
1 TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA TC
8075612 CATGTTTTGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 28 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.53
Consensus pattern (4 bp):
TCTA
Found at i:8077155 original size:13 final size:12
Alignment explanation
Indices: 8077134--8077168 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
8077124 ACGGTTACAA
8077134 AACTAACAAACT
1 AACTAACAAACT
8077146 AACTTAACAAAACT
1 AAC-TAAC-AAACT
8077160 AACTAACAA
1 AACTAACAA
8077169 TTAACTTCTA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
12 5 0.24
13 8 0.38
14 8 0.38
ACGTcount: A:0.60, C:0.23, G:0.00, T:0.17
Consensus pattern (12 bp):
AACTAACAAACT
Found at i:8079970 original size:30 final size:30
Alignment explanation
Indices: 8079936--8079996 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
8079926 GATATAATAA
8079936 CTTCATTAAACAGAACATGATACTTCAAGT
1 CTTCATTAAACAGAACATGATACTTCAAGT
8079966 CTTCATTAAACAGAACATGATACTTCAAGT
1 CTTCATTAAACAGAACATGATACTTCAAGT
8079996 C
1 C
8079997 CTAACTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (30 bp):
CTTCATTAAACAGAACATGATACTTCAAGT
Found at i:8082178 original size:29 final size:29
Alignment explanation
Indices: 8082145--8082200 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
8082135 TCATAATTCT
** *
8082145 AGGCACTTTGTGCCAGTGATTTCAGTTCC
1 AGGCACTAAGTGCCAGTGATTACAGTTCC
*
8082174 AGGCACTAAGTGCCGGTGATTACAGTT
1 AGGCACTAAGTGCCAGTGATTACAGTT
8082201 TCTAGATTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.30
Consensus pattern (29 bp):
AGGCACTAAGTGCCAGTGATTACAGTTCC
Found at i:8084489 original size:98 final size:99
Alignment explanation
Indices: 8084319--8084517 Score: 391
Period size: 98 Copynumber: 2.0 Consensus size: 99
8084309 CTATTTCCTA
8084319 ATCTCATTAGGAAAACTTAAAAAAAACCTAATTAACAAATTAAGAGGGAAATTCGGCCAAGGCAT
1 ATCTCATTAGGAAAACTTAAAAAAAACCTAATTAACAAATTAAGAGGGAAATTCGGCCAAGGCAT
8084384 TTTAATGGGCTGCTTGGGTTGAATTTTTTTACAT
66 TTTAATGGGCTGCTTGGGTTGAATTTTTTTACAT
8084418 ATCTCATTAGGAAAAC-TAAAAAAAACCTAATTAACAAATTAAGAGGGAAATTCGGCCAAGGCAT
1 ATCTCATTAGGAAAACTTAAAAAAAACCTAATTAACAAATTAAGAGGGAAATTCGGCCAAGGCAT
8084482 TTTAATGGGCTGCTTGGGTTGAATTTTTTTACAT
66 TTTAATGGGCTGCTTGGGTTGAATTTTTTTACAT
8084516 AT
1 AT
8084518 AATAATTCTA
Statistics
Matches: 100, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
98 84 0.84
99 16 0.16
ACGTcount: A:0.38, C:0.13, G:0.18, T:0.31
Consensus pattern (99 bp):
ATCTCATTAGGAAAACTTAAAAAAAACCTAATTAACAAATTAAGAGGGAAATTCGGCCAAGGCAT
TTTAATGGGCTGCTTGGGTTGAATTTTTTTACAT
Found at i:8092545 original size:594 final size:598
Alignment explanation
Indices: 8091684--8092845 Score: 2014
Period size: 594 Copynumber: 1.9 Consensus size: 598
8091674 GCCGGCCATG
* *
8091684 CCTATTAATAGGCCTTATAACTATTTCCTAATCTCATTAGGAAAACTTAAAAAAAACCTAATTAA
1 CCTATAAATAGGCCTTATAACTATTTCCTAATCGCATTAGGAAAACTTAAAAAAAACCTAATTAA
* **
8091749 CAAATTAAGAGGGAAATTCGGCCAAGGCATTTTAATGGGCTGCTTGGGTTGAATTTTTTTACATA
66 CAAATTAAGAGGGAAATTCGGCCAAGGCATTCTAATGGGCTGCTTGGGCCGAA-TTTTTTACATA
* *
8091814 TAATAATTCTAAAGTCTAAAAATTAAACTAATATTTAAACAATTAAAATTTTTACAAATTGGGCC
130 TAATAATCCTAAAGCCTAAAAATT--A-TAATATTTAAACAATTAAAATTTTTACAAATTGGGCC
*
8091879 ACTTTAACAATTTGGCCTGATTTTTCAACTAAGTATGGTTTGACTTCTTGGTTGGGTTTGGAATC
192 ACTTTAACAATTTGGCCTGATTTTTCAACTAAGTATGGTTTGACTTCTTGGTTGGGCTTGGAATC
* *
8091944 CTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAGTCCATCTCCTACCGAAATTGGTTCGT
257 CTCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAGTCCATCTCCCACCGAAATTGATTCGT
8092009 TGATGCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATTCGGTTTCTTGGACCAAGATTTC
322 TGATGCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATTCGGTTTCTTGGACCAAGATTTC
*
8092074 CAAGATTTGAAATCGTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATAGGGCCACGA
387 CAAGATTTGAAATCGTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATAGGGCCAAGA
8092139 TTCAATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTCTTTCTTTCGTGTACG
452 TTCAATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTCTTTCTTTCGTGTACG
8092204 CATCTAAGGCCTTGCTAACAAATTCCTGAATGGTCCCATTTAGTTTGGGAAATCAAGGGCGTCCT
517 CATCTAAGGCCTTGCTAACAAATTCCTGAATGGTCCCATTTAGTTTGGGAAATCAAGGGCGTCCT
8092269 TGGCCAGGGTCGTATCA
582 TGGCCAGGGTCGTATCA
8092286 CCTATAAATAGG-CTTATAACTATTTCCTAATCGCATTAGGAAAACTTAAAAAAAAACCTAATTA
1 CCTATAAATAGGCCTTATAACTATTTCCTAATCGCATTAGGAAAACTT-AAAAAAAACCTAATTA
*
8092350 ACAAATTTAAGAGGGAAATTCGGCCAAGGCATTCTAATGGGCTGCTTGGGCCGAA-TTTTTAGAT
65 ACAAA-TTAAGAGGGAAATTCGGCCAAGGCATTCTAATGGGCTGCTTGGGCCGAATTTTTTACAT
* **
8092414 ATAATACTCCTAAAGCCCTAAAAA-T-TAA-A-TTAAACAATTAATTTTTTTACAAATTGGGCCA
129 ATAATAATCCTAAAG-CCTAAAAATTATAATATTTAAACAATTAAAATTTTTACAAATTGGGCCA
8092475 CTTTAACAATTTGGCCTGA-TTTTCAACTAAGTATGGTTTGACTTCTTGGTTGGGCTTGGAATCC
193 CTTTAACAATTTGGCCTGATTTTTCAACTAAGTATGGTTTGACTTCTTGGTTGGGCTTGGAATCC
* *
8092539 TCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAGTCCATCTCCCATCGAAGTTGATTCGTT
258 TCTTATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAGTCCATCTCCCACCGAAATTGATTCGTT
* *
8092604 GATGCTCGTAACGGAGATCCAATGTGCTTTGGCTGCAAGATTTGGTTTCTTGGACCAAGATTTCC
323 GATGCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCC
* *
8092669 AAGATTTGAAATCTTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATTGGGCCAAGAT
388 AAGATTTGAAATCGTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATAGGGCCAAGAT
*
8092734 TCAGTTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTCTTTCTTTCGTGTACGC
453 TCAATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTCTTTCTTTCGTGTACGC
8092799 ATCTAAGGCCTTGCTAACAAATTCCTGAATGGTCCCATTTAGTTTGG
518 ATCTAAGGCCTTGCTAACAAATTCCTGAATGGTCCCATTTAGTTTGG
8092846 AACGCATTTG
Statistics
Matches: 535, Mismatches: 22, Indels: 14
0.94 0.04 0.02
Matches are distributed among these distances:
594 341 0.64
595 49 0.09
596 1 0.00
597 3 0.01
601 56 0.10
602 39 0.07
603 46 0.09
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.35
Consensus pattern (598 bp):
CCTATAAATAGGCCTTATAACTATTTCCTAATCGCATTAGGAAAACTTAAAAAAAACCTAATTAA
CAAATTAAGAGGGAAATTCGGCCAAGGCATTCTAATGGGCTGCTTGGGCCGAATTTTTTACATAT
AATAATCCTAAAGCCTAAAAATTATAATATTTAAACAATTAAAATTTTTACAAATTGGGCCACTT
TAACAATTTGGCCTGATTTTTCAACTAAGTATGGTTTGACTTCTTGGTTGGGCTTGGAATCCTCT
TATTGGGCCTTGCCTTCAAGAACTTGGGCTTGTAGTCCATCTCCCACCGAAATTGATTCGTTGAT
GCTCGTAACGGAGATCCAATGCGCTTTGGCTGCAAGATTCGGTTTCTTGGACCAAGATTTCCAAG
ATTTGAAATCGTGATTTTCTTGATTCTTGAAATCGCTCCAAACAGCAAAATAGGGCCAAGATTCA
ATTTCTTGATTTTCTTGAAAACAAGAAAGTGAATCTTGATTTTCTCTTTCTTTCGTGTACGCATC
TAAGGCCTTGCTAACAAATTCCTGAATGGTCCCATTTAGTTTGGGAAATCAAGGGCGTCCTTGGC
CAGGGTCGTATCA
Found at i:8093474 original size:39 final size:39
Alignment explanation
Indices: 8093431--8093534 Score: 138
Period size: 39 Copynumber: 2.7 Consensus size: 39
8093421 ATAAACATGC
* * * *
8093431 TATGAGTATTGTAATATATGCTTGAGTGTTGTGTGATTA
1 TATGAGTATTGTGATATATGCTTAAATGTTATGTGATTA
*
8093470 TATGAGTATTGTGATATATTCTTAAATGTTATGTGATTA
1 TATGAGTATTGTGATATATGCTTAAATGTTATGTGATTA
*
8093509 TAT-ATGTAATGTGATATATGCTTAAA
1 TATGA-GTATTGTGATATATGCTTAAA
8093535 AGTGAATATG
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
38 1 0.02
39 56 0.98
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (39 bp):
TATGAGTATTGTGATATATGCTTAAATGTTATGTGATTA
Found at i:8094398 original size:36 final size:36
Alignment explanation
Indices: 8094351--8094421 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
8094341 CCTACGTGAT
8094351 TGTCTTAGAAATTTTGCTAAGTGATCCTAATGCATA
1 TGTCTTAGAAATTTTGCTAAGTGATCCTAATGCATA
8094387 TGTCTTAGAAATTTTGCTAAGTGATCCTAATGCAT
1 TGTCTTAGAAATTTTGCTAAGTGATCCTAATGCAT
8094422 GTTTAATTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.30, C:0.14, G:0.17, T:0.39
Consensus pattern (36 bp):
TGTCTTAGAAATTTTGCTAAGTGATCCTAATGCATA
Found at i:8109836 original size:18 final size:18
Alignment explanation
Indices: 8109808--8109860 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 18
8109798 CCTTTTTTAT
8109808 TTTATTTTATTATTTATTA
1 TTTA-TTTATTATTTATTA
*
8109827 TTTATTTATTATTTTTTA
1 TTTATTTATTATTTATTA
*
8109845 TCTAATTTAATTATTT
1 T-TTATTT-ATTATTT
8109861 GTTTTATTTT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
18 14 0.47
19 9 0.30
20 7 0.23
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (18 bp):
TTTATTTATTATTTATTA
Found at i:8110011 original size:23 final size:23
Alignment explanation
Indices: 8109997--8110052 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 23
8109987 TTCGTTTTCG
8109997 TTTTATTTTTATTTTAGCTTTGC
1 TTTTATTTTTATTTTAGCTTTGC
8110020 TTTTA-TTTT-TTTTAG--TT-C
1 TTTTATTTTTATTTTAGCTTTGC
*
8110038 CTTTATTTTTATTTT
1 TTTTATTTTTATTTT
8110053 TTTAGACTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
18 5 0.17
19 6 0.20
20 4 0.13
21 6 0.20
22 4 0.13
23 5 0.17
ACGTcount: A:0.12, C:0.07, G:0.05, T:0.75
Consensus pattern (23 bp):
TTTTATTTTTATTTTAGCTTTGC
Found at i:8113949 original size:16 final size:16
Alignment explanation
Indices: 8113928--8113958 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8113918 TAATTTCTTA
8113928 ATATATGATATGTTTC
1 ATATATGATATGTTTC
*
8113944 ATATATGTTATGTTT
1 ATATATGATATGTTT
8113959 ACTTATTATC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (16 bp):
ATATATGATATGTTTC
Found at i:8137140 original size:24 final size:23
Alignment explanation
Indices: 8137111--8137189 Score: 68
Period size: 24 Copynumber: 3.2 Consensus size: 23
8137101 AATTTCTTCA
8137111 ACAAATATATATAATTTCATAATT
1 ACAAATATATATAATTTCA-AATT
*
8137135 ACAAATATGGTATAACTTATCAAATTT
1 ACAAATAT-ATATAA-TT-TCAAA-TT
* **
8137162 ACAAATATACACCATTTCAAAATT
1 ACAAATATATATAATTTC-AAATT
8137186 ACAA
1 ACAA
8137190 TTATGGTATA
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
24 16 0.36
25 10 0.22
26 6 0.13
27 13 0.29
ACGTcount: A:0.49, C:0.14, G:0.03, T:0.34
Consensus pattern (23 bp):
ACAAATATATATAATTTCAAATT
Found at i:8146011 original size:20 final size:20
Alignment explanation
Indices: 8145977--8146018 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
8145967 AACTATTTAA
** *
8145977 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
8145997 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
8146017 AT
1 AT
8146019 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:8146487 original size:9 final size:9
Alignment explanation
Indices: 8146473--8146503 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
8146463 GTTAAACGAA
8146473 TCGAGTTAT
1 TCGAGTTAT
*
8146482 TCGAGTTAA
1 TCGAGTTAT
8146491 TCGAGTTAT
1 TCGAGTTAT
8146500 TCGA
1 TCGA
8146504 ATCAACTCGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 20 1.00
ACGTcount: A:0.26, C:0.13, G:0.23, T:0.39
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:8146575 original size:9 final size:9
Alignment explanation
Indices: 8146558--8146594 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
8146548 TGAGTTTTCG
8146558 AATTCGAAT
1 AATTCGAAT
*
8146567 AACTCGAAT
1 AATTCGAAT
8146576 AATTCGAAT
1 AATTCGAAT
8146585 AATTCGAAT
1 AATTCGAAT
8146594 A
1 A
8146595 TCAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:8147301 original size:5 final size:5
Alignment explanation
Indices: 8147291--8147316 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8147281 GAACAAATAT
8147291 ATTCG ATTCG ATTCG ATTCG ATTCG A
1 ATTCG ATTCG ATTCG ATTCG ATTCG A
8147317 ATTCCATCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.19, G:0.19, T:0.38
Consensus pattern (5 bp):
ATTCG
Found at i:8149249 original size:23 final size:23
Alignment explanation
Indices: 8149219--8149264 Score: 74
Period size: 23 Copynumber: 2.0 Consensus size: 23
8149209 ATCTAAGAGA
*
8149219 AACTCTATTTTTTCTGTTAGTTT
1 AACTCTATTTTTTCTGTCAGTTT
*
8149242 AACTCTATTTTTTTTGTCAGTTT
1 AACTCTATTTTTTCTGTCAGTTT
8149265 CTTCCTTTGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.17, C:0.13, G:0.09, T:0.61
Consensus pattern (23 bp):
AACTCTATTTTTTCTGTCAGTTT
Found at i:8149790 original size:17 final size:17
Alignment explanation
Indices: 8149768--8149802 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8149758 ATCCAAGGTA
8149768 AACCTTAAAGTTGATTC
1 AACCTTAAAGTTGATTC
8149785 AACCTTAAAGTTGATTC
1 AACCTTAAAGTTGATTC
8149802 A
1 A
8149803 GGTTTCTCAG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (17 bp):
AACCTTAAAGTTGATTC
Found at i:8151272 original size:31 final size:31
Alignment explanation
Indices: 8151237--8151299 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
8151227 CCTCATCGTC
8151237 CAATGATAGCGCAACAAAACCTCTTTCCATT
1 CAATGATAGCGCAACAAAACCTCTTTCCATT
8151268 CAATGATAGCGCAACAAAACCTCTTTCCATT
1 CAATGATAGCGCAACAAAACCTCTTTCCATT
8151299 C
1 C
8151300 CCCTATATCA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.35, C:0.30, G:0.10, T:0.25
Consensus pattern (31 bp):
CAATGATAGCGCAACAAAACCTCTTTCCATT
Found at i:8154126 original size:11 final size:12
Alignment explanation
Indices: 8154105--8154129 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
8154095 CCAAACACAC
8154105 TTTTAATTTTTT
1 TTTTAATTTTTT
8154117 TTTTAATTTTTT
1 TTTTAATTTTTT
8154129 T
1 T
8154130 AAATTTAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTTAATTTTTT
Found at i:8155756 original size:45 final size:45
Alignment explanation
Indices: 8155707--8155793 Score: 156
Period size: 45 Copynumber: 1.9 Consensus size: 45
8155697 ATCAACAATG
8155707 TTAATAATAATTTTGTAACAAATTAAAATTTAATAACTAAAAATT
1 TTAATAATAATTTTGTAACAAATTAAAATTTAATAACTAAAAATT
* *
8155752 TTAATAATTATTTTGTAAGAAATTAAAATTTAATAACTAAAA
1 TTAATAATAATTTTGTAACAAATTAAAATTTAATAACTAAAA
8155794 GCATAATTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (45 bp):
TTAATAATAATTTTGTAACAAATTAAAATTTAATAACTAAAAATT
Found at i:8160583 original size:186 final size:183
Alignment explanation
Indices: 8160252--8160616 Score: 570
Period size: 186 Copynumber: 2.0 Consensus size: 183
8160242 ATCCACCATG
* *
8160252 TCCATACTGTAAGAAGACAAATCACTTGCCAAAAGTGTTGGTGGAGGCCTGATATCAAATGCAGA
1 TCCATACTGTAAGAAGACAAATCACTTGCCAAAAGTGTTAGTGGAGGCCTAATATCAAATGCAGA
* * * *
8160317 AAATGTGGCAGTATTGGGCACTTAGAGTGGGTCTAAGTCTCAACAACATGAAGAGGCAAAAGCAT
66 AAATGTGGCAATATTAGGCACATAGAGTGGGTCTAAGTCTCAACAACATGAAGAGACAAAAGCAT
*
8160382 TTATTGAGCAACAAGAAGATGAGTTTCTTTTTGTGGCAACATGTTTCTCTAGTA
131 TTATTGA-CAACAAGAAGATGAGTTCCTTTTTGTGGCAACATGTTTCTCTAGTA
*
8160436 TCCATATTGTAAGAAGACAAATCACTTGCCAAAGAAGTGTTAGTGGAGGCCTAATATCAAATGCA
1 TCCATACTGTAAGAAGACAAATCACTTGCC-AA-AAGTGTTAGTGGAGGCCTAATATCAAATGCA
* *
8160501 GAAAATGTGGCAATATTAGGCACATAGAGTGGGTTTGTAAGTCTCAACAATATGAAGAGACAAAA
64 GAAAATGTGGCAATATTAGGCACATAGAGTGGG--TCTAAGTCTCAACAACATGAAGAGACAAAA
**
8160566 GCATTTATTGA-AACAAGAAGATGAGTTCCTTTTTGTGGTGACATGTTTCTC
127 GCATTTATTGACAACAAGAAGATGAGTTCCTTTTTGTGGCAACATGTTTCTC
8160617 CAGTGATTCC
Statistics
Matches: 165, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
184 29 0.18
185 2 0.01
186 96 0.58
188 38 0.23
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.28
Consensus pattern (183 bp):
TCCATACTGTAAGAAGACAAATCACTTGCCAAAAGTGTTAGTGGAGGCCTAATATCAAATGCAGA
AAATGTGGCAATATTAGGCACATAGAGTGGGTCTAAGTCTCAACAACATGAAGAGACAAAAGCAT
TTATTGACAACAAGAAGATGAGTTCCTTTTTGTGGCAACATGTTTCTCTAGTA
Found at i:8161001 original size:5 final size:5
Alignment explanation
Indices: 8160991--8161016 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
8160981 TGAGAATTCG
8160991 ATCGA ATCGA ATCGA ATCGA ATCGA A
1 ATCGA ATCGA ATCGA ATCGA ATCGA A
8161017 AATTTTCGAG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.19, G:0.19, T:0.19
Consensus pattern (5 bp):
ATCGA
Found at i:8161806 original size:9 final size:9
Alignment explanation
Indices: 8161792--8161828 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
8161782 TATAGTTTGA
8161792 TATTCGAAT
1 TATTCGAAT
8161801 TATTCGAAT
1 TATTCGAAT
*
8161810 TATTCGAGT
1 TATTCGAAT
*
8161819 TATTTGAAT
1 TATTCGAAT
8161828 T
1 T
8161829 CGAAAACTCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:8164087 original size:12 final size:12
Alignment explanation
Indices: 8164070--8164095 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
8164060 TTAAAAACAT
8164070 AAAAAAGTATAA
1 AAAAAAGTATAA
8164082 AAAAAAGTATAA
1 AAAAAAGTATAA
8164094 AA
1 AA
8164096 TTACTTAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.77, C:0.00, G:0.08, T:0.15
Consensus pattern (12 bp):
AAAAAAGTATAA
Found at i:8167134 original size:21 final size:22
Alignment explanation
Indices: 8167101--8167184 Score: 58
Period size: 21 Copynumber: 4.1 Consensus size: 22
8167091 AGGTATCTAG
8167101 TTTTT-TAA-ATTTTAAATATA
1 TTTTTATAACATTTTAAATATA
**
8167121 TTTTTATAATTTTTTAAA-ATA
1 TTTTTATAACATTTTAAATATA
* * *
8167142 TATTTACAAC-TTTT--TTATA
1 TTTTTATAACATTTTAAATATA
8167161 TTTTTAGTAA-ATTTTAAATA-A
1 TTTTTA-TAACATTTTAAATATA
8167182 TTT
1 TTT
8167185 GTTACAAAGT
Statistics
Matches: 49, Mismatches: 8, Indels: 13
0.70 0.11 0.19
Matches are distributed among these distances:
19 8 0.16
20 15 0.31
21 17 0.35
22 9 0.18
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (22 bp):
TTTTTATAACATTTTAAATATA
Found at i:8167155 original size:22 final size:22
Alignment explanation
Indices: 8167110--8167158 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
8167100 GTTTTTTAAA
* *
8167110 TTTTAAATATATTTTTATAATT
1 TTTTAAATATATATTTACAATT
8167132 TTTTAAA-ATATATTTACAACTT
1 TTTTAAATATATATTTACAA-TT
8167154 TTTTA
1 TTTTA
8167159 TATTTTTAGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 10 0.42
22 14 0.58
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (22 bp):
TTTTAAATATATATTTACAATT
Found at i:8167293 original size:18 final size:20
Alignment explanation
Indices: 8167272--8167314 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
8167262 CGTTTATCAT
*
8167272 TTTTTTATA-ATT-TATATG
1 TTTTTTATAGATTATATATA
8167290 TTTTTTATAGATTATATATA
1 TTTTTTATAGATTATATATA
8167310 TTTTT
1 TTTTT
8167315 GAATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
19 3 0.14
20 10 0.45
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (20 bp):
TTTTTTATAGATTATATATA
Found at i:8170697 original size:24 final size:24
Alignment explanation
Indices: 8170642--8170740 Score: 110
Period size: 24 Copynumber: 4.2 Consensus size: 24
8170632 CATGCAAAGA
* *
8170642 CTTATGTGATTGAGTATG-GAACC
1 CTTATATGATTTAGTATGTGAACC
* *
8170665 CTTACATGATTTAGTATGCGAACC
1 CTTATATGATTTAGTATGTGAACC
**
8170689 CCCATATGATTTAGTATGTGAACC
1 CTTATATGATTTAGTATGTGAACC
* * *
8170713 TTTATGTGATTTAGTATGTGAACT
1 CTTATATGATTTAGTATGTGAACC
8170737 CTTA
1 CTTA
8170741 GTGAATGTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
23 15 0.24
24 47 0.76
ACGTcount: A:0.27, C:0.15, G:0.19, T:0.38
Consensus pattern (24 bp):
CTTATATGATTTAGTATGTGAACC
Found at i:8170762 original size:22 final size:22
Alignment explanation
Indices: 8170737--8170801 Score: 112
Period size: 22 Copynumber: 3.0 Consensus size: 22
8170727 TATGTGAACT
8170737 CTTAGTGAATGTTATGCAAACC
1 CTTAGTGAATGTTATGCAAACC
*
8170759 CTTAGTGTATGTTATGCAAACC
1 CTTAGTGAATGTTATGCAAACC
*
8170781 CTTAGTAAATGTTATGCAAAC
1 CTTAGTGAATGTTATGCAAAC
8170802 GTTGTTGCAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 40 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (22 bp):
CTTAGTGAATGTTATGCAAACC
Found at i:8170992 original size:15 final size:15
Alignment explanation
Indices: 8170972--8171002 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8170962 TGATTTAGTA
*
8170972 TGCGAAGCCTGTATG
1 TGCGAACCCTGTATG
8170987 TGCGAACCCTGTATG
1 TGCGAACCCTGTATG
8171002 T
1 T
8171003 TAGTATATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.23, G:0.29, T:0.29
Consensus pattern (15 bp):
TGCGAACCCTGTATG
Found at i:8178176 original size:17 final size:17
Alignment explanation
Indices: 8178154--8178188 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8178144 TTTCTTCAAT
*
8178154 TATATTCAATAATTTTA
1 TATATTCAAAAATTTTA
*
8178171 TATATTTAAAAATTTTA
1 TATATTCAAAAATTTTA
8178188 T
1 T
8178189 TAATTGCCAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATATTCAAAAATTTTA
Found at i:8178740 original size:156 final size:156
Alignment explanation
Indices: 8178532--8178838 Score: 526
Period size: 156 Copynumber: 2.0 Consensus size: 156
8178522 AAGTGACAAT
8178532 CCACTTCAATATGTTTAATATACTCATGAAATAAGGGATTCTGTGCAATATGCAGCGCAAATTGA
1 CCACTTCAATATGTTTAATATACTCATGAAATAAGGGATTCTGTGCAATATGCAGCGCAAATTGA
*
8178597 CTATCACAAAATAAAGGAATTGCTTTAGAATGATGAACACCTAAGCTCAACAGCAAGGCCTTCAG
66 CTATCACAAAATAAAGGAATTGCTTTAGAATGATGAACACCTAAGCTCAAAAGCAAGGCCTTCAG
8178662 CCACTTGAGCTCACAAGTGATGGATG
131 CCACTTGAGCTCACAAGTGATGGATG
* * * * *
8178688 CCACTTCAATATGTTTAGTATGCTCGTGAAATACA-GGATTGTGTGCAATATGCAGCGCAGATTG
1 CCACTTCAATATGTTTAATATACTCATGAAATA-AGGGATTCTGTGCAATATGCAGCGCAAATTG
*
8178752 ACTATCACAAAATAAAGGAATTGCTTTAGAATGATGAACATCTAAGCTCAAAAGCAAGGCCTTCA
65 ACTATCACAAAATAAAGGAATTGCTTTAGAATGATGAACACCTAAGCTCAAAAGCAAGGCCTTCA
*
8178817 GCCATTTGAGCTCACAAGTGAT
130 GCCACTTGAGCTCACAAGTGAT
8178839 AGAAGCCATA
Statistics
Matches: 142, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
156 141 0.99
157 1 0.01
ACGTcount: A:0.35, C:0.19, G:0.19, T:0.26
Consensus pattern (156 bp):
CCACTTCAATATGTTTAATATACTCATGAAATAAGGGATTCTGTGCAATATGCAGCGCAAATTGA
CTATCACAAAATAAAGGAATTGCTTTAGAATGATGAACACCTAAGCTCAAAAGCAAGGCCTTCAG
CCACTTGAGCTCACAAGTGATGGATG
Found at i:8182774 original size:3 final size:3
Alignment explanation
Indices: 8182768--8182800 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8182758 CCTCCTTCCC
8182768 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
8182801 TCTGGTTGAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:8187223 original size:43 final size:42
Alignment explanation
Indices: 8187154--8187295 Score: 130
Period size: 43 Copynumber: 3.3 Consensus size: 42
8187144 CAAATAGTCA
8187154 AACACATCAAACAATGCCAACGTCCCAGACGTGGTCTTACATGT
1 AACACAT--AACAATGCCAACGTCCCAGACGTGGTCTTACATGT
* * * *
8187198 AATCACATAACGATG-CTACTGTCCCAGATAG-GGTTTTA-ACTGT
1 AA-CACATAACAATGCCAAC-GTCCCAGA-CGTGGTCTTACA-TGT
*
8187241 AAACACA-AGTCAATGCCAACGTCCCAGACGTGGTCTTACATGAT
1 -AACACATA-ACAATGCCAACGTCCCAGACGTGGTCTTACATG-T
8187285 AACACATAACA
1 AACACATAACA
8187296 GAATCCTATG
Statistics
Matches: 77, Mismatches: 10, Indels: 23
0.70 0.09 0.21
Matches are distributed among these distances:
42 6 0.08
43 55 0.71
44 11 0.14
45 5 0.06
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (42 bp):
AACACATAACAATGCCAACGTCCCAGACGTGGTCTTACATGT
Found at i:8203077 original size:18 final size:18
Alignment explanation
Indices: 8203054--8203089 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
8203044 ATTGATTGAA
8203054 TAAATTTATTT-TTTCTTT
1 TAAATTT-TTTCTTTCTTT
8203072 TAAATTTTTTCTTTCTTT
1 TAAATTTTTTCTTTCTTT
8203090 CTCTTCTCTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 3 0.18
18 14 0.82
ACGTcount: A:0.19, C:0.08, G:0.00, T:0.72
Consensus pattern (18 bp):
TAAATTTTTTCTTTCTTT
Found at i:8204815 original size:62 final size:62
Alignment explanation
Indices: 8204738--8204868 Score: 208
Period size: 62 Copynumber: 2.1 Consensus size: 62
8204728 GAAATAGTTG
* *
8204738 ACAAATACTCTTTAACAAAAACAATTTTATTATTATTTTAACTGAAAGCCTTAATATCTAAAA
1 ACAAA-ACTCTTTAACAAAAACAATTTTATTATTATTTTAACTAAAAGCCTTAATATATAAAA
* * *
8204801 ATAAAACTCTTTAACGAAAATAATTTTATTATTATTTTAACTAAAAGCCTTAATATATAAAA
1 ACAAAACTCTTTAACAAAAACAATTTTATTATTATTTTAACTAAAAGCCTTAATATATAAAA
8204863 ACAAAA
1 ACAAAA
8204869 GAAAGTATAA
Statistics
Matches: 62, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
62 58 0.94
63 4 0.06
ACGTcount: A:0.49, C:0.12, G:0.03, T:0.36
Consensus pattern (62 bp):
ACAAAACTCTTTAACAAAAACAATTTTATTATTATTTTAACTAAAAGCCTTAATATATAAAA
Found at i:8220760 original size:43 final size:43
Alignment explanation
Indices: 8220702--8220901 Score: 242
Period size: 43 Copynumber: 4.7 Consensus size: 43
8220692 CAATGCCTAC
* * *
8220702 GTCCCAGACGA-GGTCTTGCATGT-AATCAAATATCGATGCCACT
1 GTCCCAGAC-ATGGTCTTACATGTAAATCATATA-CGATGCCAAT
* *** *
8220745 GTCCCAGACAGGGTCTTATGCGTAAATCATATACGATACCAAT
1 GTCCCAGACATGGTCTTACATGTAAATCATATACGATGCCAAT
* * *
8220788 GTCCTAGACATGATCTTACACGTAAATCATATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAATCATATACGATGCCAAT
* *
8220831 GTCTCAGACATGGTCTTACACGTAAATCATATACGATGCCAAT
1 GTCCCAGACATGGTCTTACATGTAAATCATATACGATGCCAAT
*
8220874 GTCCCGGACATGGTCTTACATGTAAATC
1 GTCCCAGACATGGTCTTACATGTAAATC
8220902 TCAAATCAAT
Statistics
Matches: 136, Mismatches: 19, Indels: 4
0.86 0.12 0.03
Matches are distributed among these distances:
42 1 0.01
43 127 0.93
44 8 0.06
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACATGTAAATCATATACGATGCCAAT
Found at i:8220846 original size:86 final size:87
Alignment explanation
Indices: 8220725--8220934 Score: 248
Period size: 86 Copynumber: 2.4 Consensus size: 87
8220715 TCTTGCATGT
* **
8220725 AATCAAATATCGATGCCACTGTCCCAGACAGGGTCTTATGCGTAAATCATATACGATACCAATGT
1 AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCATATACGATACCAATGT
*
8220790 CCTAGACATGATCTTACACGTA
66 CCCAGACATGATCTTACACGTA
* * * *
8220812 AATCATATA-CGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCATATACGATGCCAATGT
1 AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCATATACGATACCAATGT
* * *
8220876 CCCGGACATGGTCTTACATGTA
66 CCCAGACATGATCTTACACGTA
* *
8220898 AATCTCAA-ATCAATGCC-ATCGTCCCAGAC-GTGGTCTT
1 AATC-AAATATCGATGCCAAT-GTCCCAGACAG-GGTCTT
8220935 TCTCAATATT
Statistics
Matches: 103, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
86 74 0.72
87 29 0.28
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (87 bp):
AATCAAATATCGATGCCAATGTCCCAGACAGGGTCTTACACGTAAATCATATACGATACCAATGT
CCCAGACATGATCTTACACGTA
Found at i:8220932 original size:44 final size:43
Alignment explanation
Indices: 8220690--8220934 Score: 219
Period size: 43 Copynumber: 5.7 Consensus size: 43
8220680 GTAAAGATCG
* * * *
8220690 TACAATGCCTACGTCCCAGACGA-GGTCTTGCATGT-AATCAAA
1 TACAATGCCAATGTCCCAGAC-ATGGTCTTACACGTAAATCAAA
* * * ** *
8220732 TATCGATGCCACTGTCCCAGACAGGGTCTTATGCGTAAATCATA
1 TA-CAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAA
* * * * *
8220776 TACGATACCAATGTCCTAGACATGATCTTACACGTAAATCATA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAA
* * *
8220819 TACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCATA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAA
* * *
8220862 TACGATGCCAATGTCCCGGACATGGTCTTACATGTAAATCTCAAA
1 TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAA--TCAAA
*
8220907 T-CAATGCC-ATCGTCCCAGACGTGGTCTT
1 TACAATGCCAAT-GTCCCAGACATGGTCTT
8220935 TCTCAATATT
Statistics
Matches: 170, Mismatches: 27, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
42 3 0.02
43 133 0.78
44 29 0.17
45 5 0.03
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (43 bp):
TACAATGCCAATGTCCCAGACATGGTCTTACACGTAAATCAAA
Found at i:8228921 original size:19 final size:19
Alignment explanation
Indices: 8228897--8228938 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
8228887 TCCAATTCAA
* * *
8228897 TCTCAACTCTCTTTCACAT
1 TCTCAAATCTCTCTCAAAT
8228916 TCTCAAATCTCTCTCAAAT
1 TCTCAAATCTCTCTCAAAT
8228935 TCTC
1 TCTC
8228939 TTAATTCACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.24, C:0.36, G:0.00, T:0.40
Consensus pattern (19 bp):
TCTCAAATCTCTCTCAAAT
Found at i:8228938 original size:12 final size:12
Alignment explanation
Indices: 8228916--8228968 Score: 51
Period size: 12 Copynumber: 4.8 Consensus size: 12
8228906 TCTTTCACAT
8228916 TCTCAAA-TCTC
1 TCTCAAATTCTC
8228927 TCTCAAATTCTC
1 TCTCAAATTCTC
*
8228939 T-T--AATTCAC
1 TCTCAAATTCTC
*
8228948 TCTTAAATTCTC
1 TCTCAAATTCTC
*
8228960 ACTCAAATT
1 TCTCAAATT
8228969 TTATTTCTCT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
9 7 0.21
10 1 0.03
11 8 0.24
12 18 0.53
ACGTcount: A:0.30, C:0.28, G:0.00, T:0.42
Consensus pattern (12 bp):
TCTCAAATTCTC
Done.