Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 29 of 163
Found at i:9213076 original size:21 final size:19
Alignment explanation
Indices: 9213044--9213091 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
9213034 TTTTTTTTGT
*
9213044 AAAATCAAATTTTTGTTTAA
1 AAAATCAAATTTTT-CTTAA
*
9213064 AAAATCATTATTTTTCTT-A
1 AAAATCA-AATTTTTCTTAA
9213083 AAAATCAAA
1 AAAATCAAA
9213092 ACTTTATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 1 0.04
19 8 0.33
20 9 0.38
21 6 0.25
ACGTcount: A:0.48, C:0.08, G:0.02, T:0.42
Consensus pattern (19 bp):
AAAATCAAATTTTTCTTAA
Found at i:9213358 original size:146 final size:147
Alignment explanation
Indices: 9213073--9213361 Score: 399
Period size: 146 Copynumber: 2.0 Consensus size: 147
9213063 AAAAATCATT
9213073 ATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAATTGAGAAAAAAATCAAAACTTTGTTTTAA
1 ATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAATTGAGAAAAAAATCAAAACTTTGTTTTAA
** * *
9213138 AAATTTTAAACTTTTGTTTTAAAATGAATAAAAAACATATTTTTATTTTAAAAATATAAAGTTTC
66 AAATTTTAAACTTTTCCTTTAAAATGAATAAAAAACAGATTTTTATTTTAAAAATATAAACTTTC
9213203 TCTTTAAAAAAAACACA
131 TCTTTAAAAAAAACACA
** * * *
9213220 ATTTTTCTTAAAGTTCAAAGCTTTTATTTTGAAATAGTT-A-AAAAAAATCAAAACTTTGTTTTA
1 ATTTTTCTTAAAAATCAAAAC-TTTATTTCGAAATAATTGAGAAAAAAATCAAAACTTTGTTTTA
* *
9213283 AAAA-TTTAAAC-TTTCCTTTAAAATGATTAAAAAA-AGATTTTTATTTTTAAAATATAAACTCC
65 AAAATTTTAAACTTTTCCTTTAAAATGAATAAAAAACAGATTTTTATTTTAAAAATATAAACT--
* *
9213345 TTTTTTTTAAAAAAAAC
128 TTCTCTTTAAAAAAAAC
9213362 CAAAACTTTG
Statistics
Matches: 126, Mismatches: 13, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
143 23 0.18
144 20 0.16
145 22 0.17
146 27 0.21
147 19 0.15
148 15 0.12
ACGTcount: A:0.46, C:0.08, G:0.05, T:0.41
Consensus pattern (147 bp):
ATTTTTCTTAAAAATCAAAACTTTATTTCGAAATAATTGAGAAAAAAATCAAAACTTTGTTTTAA
AAATTTTAAACTTTTCCTTTAAAATGAATAAAAAACAGATTTTTATTTTAAAAATATAAACTTTC
TCTTTAAAAAAAACACA
Found at i:9214171 original size:326 final size:325
Alignment explanation
Indices: 9213579--9214226 Score: 1197
Period size: 326 Copynumber: 2.0 Consensus size: 325
9213569 CAATGCTTGT
*
9213579 TGTTATTTCTTTTTACCTTCTTTTTAAGAACAAAAATATGATGAGCGTTTTTTTCTTTCATTGCA
1 TGTTATTTCTTTTTACCTTCTTTTTAAGAACAAAAATATGATAAGCGTTTTTTTCTTTCATTGCA
9213644 TTTCATGTATATATATTGTTTTTTAATCTAGTTTATTTGTAAAAAATGATAATAATAATATTTAA
66 TTTCATGTATATATATTGTTTTTTAATCTAGTTTATTTGTAAAAAATGATAATAATAATATTTAA
9213709 TAATAATAGTAGTAGTGATGATAATAATAATTTGGGCCCTTGACAGGCCCAAAAAAGAAAGAAAA
131 TAATAATAGTAGTAGTGATGATAATAATAATTTGGGCCCTTGACAGGCCCAAAAAAGAAAGAAAA
* *
9213774 AAAAAGAAAAACAAATCTCTCAAATTGACCAAAATCAAATGAGCTTTGAACGACATAAGGGAGAA
196 AAAAAGAAAAACAAAGCTCTCAAATTGACCAAAATCAAATGAGCTTTGAACGACATAAGAGAGAA
* *
9213839 CAAAAATTTAAATGTGCCTCTAATTGGGCTCGAACAAAATGAGTGTCAACAAAATAGGCCCTAAA
261 CAAAAATTTAAATGGGCCTCCAATTGGGCTCGAACAAAATGAGTGTCAACAAAATAGGCCCTAAA
*
9213904 TGTTATTTCTTTTTACCTTTTTTTTAAGAACAAAAATATGATAAGCGTTTTTTTTCTTTCATTGC
1 TGTTATTTCTTTTTACCTTCTTTTTAAGAACAAAAATATGATAAGCG-TTTTTTTCTTTCATTGC
9213969 ATTTCATGTATATATATTGTTTTTTAATCTAGTTTATTTGTAAAAAATGATAATAATAATATTTA
65 ATTTCATGTATATATATTGTTTTTTAATCTAGTTTATTTGTAAAAAATGATAATAATAATATTTA
9214034 ATAATAATAGTAGTAGTGATGATAATAATAATTTGGGCCCTTGACAGGCCCAAAAAAGAAAGAAA
130 ATAATAATAGTAGTAGTGATGATAATAATAATTTGGGCCCTTGACAGGCCCAAAAAAGAAAGAAA
* *
9214099 AAAAAAGAAAAACAAAGGTCTCAAATTGACCAAAATCAAATGAGCTTTGAACGTCATAAGAGAGA
195 AAAAAAGAAAAACAAAGCTCTCAAATTGACCAAAATCAAATGAGCTTTGAACGACATAAGAGAGA
* *
9214164 ACAAAAATTTAAATGGGCCTCCAATTGGGCTCGAACCAAATGAGTGTCTACAAAATAGGCCCT
260 ACAAAAATTTAAATGGGCCTCCAATTGGGCTCGAACAAAATGAGTGTCAACAAAATAGGCCCT
9214227 CAATATGACA
Statistics
Matches: 312, Mismatches: 10, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
325 45 0.14
326 267 0.86
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.33
Consensus pattern (325 bp):
TGTTATTTCTTTTTACCTTCTTTTTAAGAACAAAAATATGATAAGCGTTTTTTTCTTTCATTGCA
TTTCATGTATATATATTGTTTTTTAATCTAGTTTATTTGTAAAAAATGATAATAATAATATTTAA
TAATAATAGTAGTAGTGATGATAATAATAATTTGGGCCCTTGACAGGCCCAAAAAAGAAAGAAAA
AAAAAGAAAAACAAAGCTCTCAAATTGACCAAAATCAAATGAGCTTTGAACGACATAAGAGAGAA
CAAAAATTTAAATGGGCCTCCAATTGGGCTCGAACAAAATGAGTGTCAACAAAATAGGCCCTAAA
Found at i:9220724 original size:22 final size:22
Alignment explanation
Indices: 9220694--9220736 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9220684 TATACTTATA
* *
9220694 GATATAACACAACTTGGCTCAT
1 GATAGAACACAACCTGGCTCAT
9220716 GATAGAACACAACCTGGCTCA
1 GATAGAACACAACCTGGCTCA
9220737 CGATTATCTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (22 bp):
GATAGAACACAACCTGGCTCAT
Found at i:9221261 original size:14 final size:12
Alignment explanation
Indices: 9221240--9221277 Score: 51
Period size: 12 Copynumber: 3.1 Consensus size: 12
9221230 ACTTAATCAC
9221240 TTTAATATTAAA
1 TTTAATATTAAA
9221252 TTTATTATATT-AA
1 TTTA--ATATTAAA
9221265 TTTAATATTAAA
1 TTTAATATTAAA
9221277 T
1 T
9221278 CTTCTTAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
11 5 0.22
12 7 0.30
13 6 0.26
14 5 0.22
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:9221343 original size:18 final size:19
Alignment explanation
Indices: 9221316--9221363 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
9221306 GTAGATAAAC
*
9221316 ATTAAATTAA-ATTTTAAT
1 ATTAAATTAACACTTTAAT
*
9221334 ATTAACTTAATCACTTTAAT
1 ATTAAATTAA-CACTTTAAT
*
9221354 ATTAGATTAA
1 ATTAAATTAA
9221364 TAAAATACTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 9 0.38
20 15 0.62
ACGTcount: A:0.46, C:0.06, G:0.02, T:0.46
Consensus pattern (19 bp):
ATTAAATTAACACTTTAAT
Found at i:9224782 original size:35 final size:37
Alignment explanation
Indices: 9224710--9224785 Score: 95
Period size: 35 Copynumber: 2.1 Consensus size: 37
9224700 TAACAAATAG
9224710 AATTAAAATATTATAATTATAAAATAACAATAAATAAT
1 AATTAAAATATTAT-ATTATAAAATAACAATAAATAAT
* *
9224748 AATTAAAATATT-T-TTATAATATTAA-AATATATAAT
1 AATTAAAATATTATATTATAA-AATAACAATAAATAAT
9224783 AAT
1 AAT
9224786 GGAATTTATT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
35 18 0.51
36 4 0.11
37 1 0.03
38 12 0.34
ACGTcount: A:0.59, C:0.01, G:0.00, T:0.39
Consensus pattern (37 bp):
AATTAAAATATTATATTATAAAATAACAATAAATAAT
Found at i:9225783 original size:40 final size:40
Alignment explanation
Indices: 9225722--9225833 Score: 152
Period size: 40 Copynumber: 2.8 Consensus size: 40
9225712 GGGTACGTAA
* * *
9225722 GTGCAATCAAGGATACTGAAGTACAAATAGGGGCACATAT
1 GTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACATAT
* * *
9225762 GTGCAATCAGGGGTACCGAAGTACAAACAAGGGCACGTAT
1 GTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACATAT
* *
9225802 GTGCAATCAGGAGTATTGAAGTACAAACAGGG
1 GTGCAATCAGGGGTACTGAAGTACAAACAGGG
9225834 TATAATTTAC
Statistics
Matches: 62, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 62 1.00
ACGTcount: A:0.38, C:0.16, G:0.29, T:0.18
Consensus pattern (40 bp):
GTGCAATCAGGGGTACTGAAGTACAAACAGGGGCACATAT
Found at i:9227052 original size:21 final size:21
Alignment explanation
Indices: 9226995--9227052 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 21
9226985 TGATGCAATG
* *
9226995 TCCTACAATACTAAA-ATAATT
1 TCCTAAAATAC-AAATATAATA
**
9227016 TCCTAAAATATGAATATAATA
1 TCCTAAAATACAAATATAATA
*
9227037 TCCTAAAATGCAAATA
1 TCCTAAAATACAAATA
9227053 CATCTACTTA
Statistics
Matches: 29, Mismatches: 7, Indels: 2
0.76 0.18 0.05
Matches are distributed among these distances:
20 2 0.07
21 27 0.93
ACGTcount: A:0.50, C:0.16, G:0.03, T:0.31
Consensus pattern (21 bp):
TCCTAAAATACAAATATAATA
Found at i:9229013 original size:41 final size:40
Alignment explanation
Indices: 9228928--9229043 Score: 115
Period size: 41 Copynumber: 2.8 Consensus size: 40
9228918 TTGAGTTTTA
* * *
9228928 GGGGCTTTAGTGGCGTTTTTTAGAAAGCGTCGCTAAAGCAT
1 GGGGCTTTAGCGGCG-TTTTTGGAAAGCGCCGCTAAAGCAT
** *
9228969 GGGGCTTTAGCGGCGTTTTTGGATAAGCGCCGCTAATTCTT
1 GGGGCTTTAGCGGCGTTTTTGGA-AAGCGCCGCTAAAGCAT
* * *
9229010 GGGGATTTTAGCTGCGCTTTTGGAAAAGCGCCGC
1 GGGG-CTTTAGCGGCGTTTTTGG-AAAGCGCCGC
9229044 AAAAAATAAT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
40 7 0.11
41 31 0.49
42 24 0.38
43 1 0.02
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.31
Consensus pattern (40 bp):
GGGGCTTTAGCGGCGTTTTTGGAAAGCGCCGCTAAAGCAT
Found at i:9229227 original size:14 final size:14
Alignment explanation
Indices: 9229208--9229251 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
9229198 GAAGGGCTAT
9229208 AGATTATGGGTTTA
1 AGATTATGGGTTTA
9229222 AGATTAT-GGTTTA
1 AGATTATGGGTTTA
* *
9229235 TAGTTTATGCGTTTA
1 -AGATTATGGGTTTA
9229250 AG
1 AG
9229252 GTTTAAGGGT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
13 6 0.23
14 15 0.58
15 5 0.19
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.45
Consensus pattern (14 bp):
AGATTATGGGTTTA
Found at i:9229255 original size:7 final size:7
Alignment explanation
Indices: 9229245--9229398 Score: 69
Period size: 7 Copynumber: 21.7 Consensus size: 7
9229235 TAGTTTATGC
9229245 GTTTAAG
1 GTTTAAG
9229252 GTTTAAG
1 GTTTAAG
* *
9229259 GGTTACG
1 GTTTAAG
*
9229266 GTTTATG
1 GTTTAAG
9229273 GTTTAAG
1 GTTTAAG
9229280 GTTTATA-
1 GTTTA-AG
*
9229287 GATTAAG
1 GTTTAAG
* *
9229294 GGTTAGG
1 GTTTAAG
9229301 GTTTAAAG
1 GTTT-AAG
9229309 GTTTAAG
1 GTTTAAG
*
9229316 GGTTAAG
1 GTTTAAG
*
9229323 AG-TTGAG
1 -GTTTAAG
* *
9229330 GGTTATG
1 GTTTAAG
* *
9229337 GGTTATG
1 GTTTAAG
*
9229344 GTTTATG
1 GTTTAAG
*
9229351 ATTTAAG
1 GTTTAAG
* **
9229358 GGTTGGG
1 GTTTAAG
*
9229365 GTTTAAT
1 GTTTAAG
*
9229372 GTTTAGG
1 GTTTAAG
* *
9229379 GGTTAGGG
1 GTTTA-AG
9229387 GTTTAAG
1 GTTTAAG
9229394 GTTTA
1 GTTTA
9229399 TGTTTTATGA
Statistics
Matches: 111, Mismatches: 30, Indels: 12
0.73 0.20 0.08
Matches are distributed among these distances:
6 2 0.02
7 95 0.86
8 14 0.13
ACGTcount: A:0.23, C:0.01, G:0.35, T:0.41
Consensus pattern (7 bp):
GTTTAAG
Found at i:9229275 original size:21 final size:21
Alignment explanation
Indices: 9229246--9229398 Score: 87
Period size: 21 Copynumber: 7.2 Consensus size: 21
9229236 AGTTTATGCG
* *
9229246 TTTAAGGTTTAAGGG-TTACGG
1 TTTAAGGGTT-AGGGTTTATGG
* * * *
9229267 TTTATGGTTTAAGGTTTATAG
1 TTTAAGGGTTAGGGTTTATGG
* *
9229288 ATTAAGGGTTAGGGTTTAAAGG
1 TTTAAGGGTTAGGGTTT-ATGG
* *
9229310 TTTAAGGGTTAAGAGTTGA-GG
1 TTTAAGGGTT-AGGGTTTATGG
* * * *
9229331 GTTATGGGTTATGGTTTATGA
1 TTTAAGGGTTAGGGTTTATGG
*
9229352 TTTAAGGGTTGGGGTTTAAT-G
1 TTTAAGGGTTAGGGTTT-ATGG
* *
9229373 TTTAGGGGTTAGGGGTTTAAGG
1 TTTAAGGGTTA-GGGTTTATGG
9229395 TTTA
1 TTTA
9229399 TGTTTTATGA
Statistics
Matches: 98, Mismatches: 27, Indels: 13
0.71 0.20 0.09
Matches are distributed among these distances:
20 8 0.08
21 60 0.61
22 25 0.26
23 5 0.05
ACGTcount: A:0.24, C:0.01, G:0.35, T:0.41
Consensus pattern (21 bp):
TTTAAGGGTTAGGGTTTATGG
Found at i:9229407 original size:64 final size:64
Alignment explanation
Indices: 9229245--9229407 Score: 177
Period size: 64 Copynumber: 2.5 Consensus size: 64
9229235 TAGTTTATGC
* * * *
9229245 GTTTAAGGTTTAAGGGTTACGGTTTATGGTTTAAGGTTTATAGATTAAGGGTTAGGGTTTAAAG
1 GTTTAAGGGTTAAGAGTTAAGGTTTATGGTTTATGGTTTATAGATTAAGGGTTAGGGTTTAAAG
* * * * *
9229309 GTTTAAGGGTTAAGAGTTGAGGGTTATGGGTTATGGTTTAT-GATTTAAGGGTTGGGGTTT-AAT
1 GTTTAAGGGTTAAGAGTTAAGGTTTATGGTTTATGGTTTATAGA-TTAAGGGTTAGGGTTTAAAG
* * * *
9229372 GTTTAGGGGTTAGGGGTTTAAGGTTTATGTTTTATG
1 GTTTAAGGGTTAAGAG-TTAAGGTTTATGGTTTATG
9229408 ATTCAAGGTT
Statistics
Matches: 81, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
63 17 0.21
64 64 0.79
ACGTcount: A:0.23, C:0.01, G:0.34, T:0.42
Consensus pattern (64 bp):
GTTTAAGGGTTAAGAGTTAAGGTTTATGGTTTATGGTTTATAGATTAAGGGTTAGGGTTTAAAG
Found at i:9229447 original size:7 final size:7
Alignment explanation
Indices: 9229245--9229449 Score: 51
Period size: 7 Copynumber: 28.9 Consensus size: 7
9229235 TAGTTTATGC
*
9229245 GTTTAAG
1 GTTTAGG
9229252 GTTTAAGG
1 GTTT-AGG
*
9229260 G-TTACG
1 GTTTAGG
*
9229266 GTTTATG
1 GTTTAGG
*
9229273 GTTTAAG
1 GTTTAGG
*
9229280 GTTTATAG
1 GTTTA-GG
* *
9229288 ATTAAGG
1 GTTTAGG
9229295 G-TTAGG
1 GTTTAGG
*
9229301 GTTTAAAG
1 GTTT-AGG
9229309 GTTTAAGG
1 GTTT-AGG
* *
9229317 GTTAAGA
1 GTTTAGG
*
9229324 GTTGAGG
1 GTTTAGG
9229331 G-TTATGG
1 GTTTA-GG
*
9229338 G-TTATG
1 GTTTAGG
*
9229344 GTTTATG
1 GTTTAGG
*
9229351 ATTTAAGG
1 GTTT-AGG
*
9229359 G-TTGGG
1 GTTTAGG
**
9229365 GTTTAAT
1 GTTTAGG
9229372 GTTTAGG
1 GTTTAGG
*
9229379 GGTTAGGG
1 GTTTA-GG
*
9229387 GTTTAAG
1 GTTTAGG
*
9229394 GTTTATG
1 GTTTAGG
* *
9229401 TTTTATG
1 GTTTAGG
* * *
9229408 ATTCAAG
1 GTTTAGG
9229415 GTTTAGG
1 GTTTAGG
**
9229422 GGATAGGG
1 GTTTA-GG
*
9229430 GTTAAGG
1 GTTTAGG
9229437 GTTTAGG
1 GTTTAGG
9229444 GTTTAG
1 GTTTAG
9229450 AGTAATTAGT
Statistics
Matches: 144, Mismatches: 43, Indels: 22
0.69 0.21 0.11
Matches are distributed among these distances:
6 15 0.10
7 97 0.67
8 32 0.22
ACGTcount: A:0.23, C:0.01, G:0.36, T:0.40
Consensus pattern (7 bp):
GTTTAGG
Found at i:9233553 original size:43 final size:42
Alignment explanation
Indices: 9233492--9233732 Score: 216
Period size: 43 Copynumber: 5.6 Consensus size: 42
9233482 ATAATTTTTT
* * * *
9233492 TAAAGGTTAT-ATTTTTAGCGGCGTTTTTTGCGACAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCG-TTTGTG-GAAAAGCGCCGC
* * * *
9233535 TAAAGGT-TTGTTCTTTAGCAGCGTTTGTGATAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTG-GAAAAGCGCCGC
* * * *
9233577 TAAAGGTCATAATCATTAGCGGTGTTTGTGCCAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTG-GAAAAGCGCCGC
* * *
9233620 TAAATGTCATGATCTTTAGCGGTGTTTGTGGTAAAAGCGTCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGG-AAAAGCGCCGC
* * ** *
9233663 TAAAGGTCGTGGTCCATAGCGGCGTTTGTCGGAAAAGCGCCTC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGT-GGAAAAGCGCCGC
* *
9233706 TAAAGGTCGTGGTCTTTAGCGGCGTTT
1 TAAAGGTCATGATCTTTAGCGGCGTTT
9233733 TTTTCTAAAA
Statistics
Matches: 163, Mismatches: 31, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
42 23 0.14
43 138 0.85
44 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.28, T:0.31
Consensus pattern (42 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGGAAAAGCGCCGC
Found at i:9233647 original size:86 final size:86
Alignment explanation
Indices: 9233507--9233732 Score: 242
Period size: 86 Copynumber: 2.6 Consensus size: 86
9233497 GTTATATTTT
* * * * * *
9233507 TAGCGGCGTTTTTTGCGACAAGCGCCGCTAAAGGT-TTGTTCTTTAGCAGCGTTTGTGATAAAAG
1 TAGCGGCGTTTGTCGC-AAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAG
9233571 CGCCGCTAAAGGTCATAAT-CA
65 CGCCGCTAAAGGTCATAATCCA
* * * *
9233592 TTAGCGGTGTTTGT-GCCAAAAGCGCCGCTAAATGTCATGATCTTTAGCGGTGTTTGTGGTAAAA
1 -TAGCGGCGTTTGTCG-CAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAA
* * **
9233656 GCGTCGCTAAAGGTCGTGGTCCA
64 GCGCCGCTAAAGGTCATAATCCA
* * * *
9233679 TAGCGGCGTTTGTCGGAAAAGCGCCTCTAAAGGTCGTGGTCTTTAGCGGCGTTT
1 TAGCGGCGTTTGTCGCAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTT
9233733 TTTTCTAAAA
Statistics
Matches: 116, Mismatches: 20, Indels: 8
0.81 0.14 0.06
Matches are distributed among these distances:
85 17 0.15
86 96 0.83
87 3 0.03
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (86 bp):
TAGCGGCGTTTGTCGCAAAAGCGCCGCTAAAGGTCATGATCTTTAGCGGCGTTTGTGATAAAAGC
GCCGCTAAAGGTCATAATCCA
Found at i:9234540 original size:22 final size:22
Alignment explanation
Indices: 9234510--9234552 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
9234500 ACAGCAGAAC
* *
9234510 AGGTTTTTAGCGGCGTTTTTTT
1 AGGTCTTTAGCGGCGCTTTTTT
9234532 AGGTCTTTAGCGGCGCTTTTT
1 AGGTCTTTAGCGGCGCTTTTT
9234553 AACGCCACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.14, G:0.28, T:0.49
Consensus pattern (22 bp):
AGGTCTTTAGCGGCGCTTTTTT
Found at i:9234697 original size:42 final size:42
Alignment explanation
Indices: 9234629--9234974 Score: 491
Period size: 42 Copynumber: 8.2 Consensus size: 42
9234619 GCTAACTATT
*
9234629 GCGGCGCTTACATAAAGAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGA-AAA-AAACGCCGCTAAAGATCATGTTCTTTA
* *
9234673 GCGGCGCTTAGAAAAAAACGCCGCTGAATATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
* *
9234715 GCGGCGCTTA-AAAAAAATGCCGCTAAAGATAATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
* * *
9234756 GCGGAGCTTAGAAAAAAAATGCCCCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAG-AAAAAAACGCCGCTAAAGATCATGTTCTTTA
* *
9234799 GCGGCGCTT--AAAAAAACGCCCCTAAATATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
9234839 GCGGCGCTTAGAAAAAAAACGCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAG-AAAAAAACGCCGCTAAAGATCATGTTCTTTA
* *
9234882 GCGGCGCTTAGGAAAAAACTCCGCTAAAGATCATGTTCTTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
* * * *
9234924 GCGGCGCTTAGAACAAAACACCGCTAAAGCTCATGTTATTTA
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
9234966 GCGGCGCTT
1 GCGGCGCTT
9234975 TGGAAGAAAA
Statistics
Matches: 275, Mismatches: 22, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
40 38 0.14
41 36 0.13
42 110 0.40
43 80 0.29
44 11 0.04
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (42 bp):
GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTA
Found at i:9234750 original size:83 final size:85
Alignment explanation
Indices: 9234629--9234974 Score: 495
Period size: 83 Copynumber: 4.1 Consensus size: 85
9234619 GCTAACTATT
*
9234629 GCGGCGCTTACATAAAGAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AAAAAAACG
1 GCGGCGCTTAGA-AAA-AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACG
* *
9234693 CCGCTGAATATCATGTTCTTTA
64 CCGCTAAAGATCATGTTCTTTA
* * * *
9234715 GCGGCGCTTA-AAAAAAATGCCGCTAAAGATAATGTTCTTTAGCGGAGCTTAGAAAAAAAATGCC
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCC
*
9234779 CCTAAAGATCATGTTCTTTA
66 GCTAAAGATCATGTTCTTTA
* *
9234799 GCGGCGCTT--AAAAAAACGCCCCTAAATATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCC
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCC
9234862 GCTAAAGATCATGTTCTTTA
66 GCTAAAGATCATGTTCTTTA
* * * *
9234882 GCGGCGCTTAGGAAAAAACTCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAG-AACAAAACACC
1 GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCC
* *
9234946 GCTAAAGCTCATGTTATTTA
66 GCTAAAGATCATGTTCTTTA
9234966 GCGGCGCTT
1 GCGGCGCTT
9234975 TGGAAGAAAA
Statistics
Matches: 235, Mismatches: 22, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
83 111 0.47
84 75 0.32
85 39 0.17
86 10 0.04
ACGTcount: A:0.33, C:0.22, G:0.20, T:0.25
Consensus pattern (85 bp):
GCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTAGAAAAAAAACGCC
GCTAAAGATCATGTTCTTTA
Found at i:9235473 original size:114 final size:115
Alignment explanation
Indices: 9235262--9235488 Score: 438
Period size: 114 Copynumber: 2.0 Consensus size: 115
9235252 CATAATCTGA
9235262 AGCTGCTGTTGAAGTTCGTCGTACTTTTTGCTCTGCTCTGCTTCTCTCGATGCCGCATCTTTTTG
1 AGCTGCTGTTGAAGTTCGTCGTACTTTTTGCTCTGCTCTGCTTCTCTCGATGCCGCATCTTTTTG
*
9235327 AAGTCGTAGCTGTAGTTCTTCATATTTCTTTTGAACCTCTGCTTCTATGT
66 AAGTCGTAGCTGTAGTTCTTCATAATTCTTTTGAACCTCTGCTTCTATGT
9235377 AGCTGCTGTT-AAGTTCGTCGTACTTTTTGCTCTGCTCTGCTTCTCTCGATGCCGCATCTTTTTG
1 AGCTGCTGTTGAAGTTCGTCGTACTTTTTGCTCTGCTCTGCTTCTCTCGATGCCGCATCTTTTTG
9235441 AAGTCGTAGCTGTAGTTCTTCATAATTCTTTTGAACCTCTGCTTCTAT
66 AAGTCGTAGCTGTAGTTCTTCATAATTCTTTTGAACCTCTGCTTCTAT
9235489 CGCTGTTTCT
Statistics
Matches: 111, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
114 101 0.91
115 10 0.09
ACGTcount: A:0.14, C:0.24, G:0.19, T:0.44
Consensus pattern (115 bp):
AGCTGCTGTTGAAGTTCGTCGTACTTTTTGCTCTGCTCTGCTTCTCTCGATGCCGCATCTTTTTG
AAGTCGTAGCTGTAGTTCTTCATAATTCTTTTGAACCTCTGCTTCTATGT
Found at i:9235529 original size:21 final size:21
Alignment explanation
Indices: 9235503--9235571 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
9235493 GTTTCTCTCG
9235503 CTGCTTCTCTCGCTGCAGCCT
1 CTGCTTCTCTCGCTGCAGCCT
* * *
9235524 CTGCTTCTCTCTCTGTAACCT
1 CTGCTTCTCTCGCTGCAGCCT
* *
9235545 CTGCTTCCCTCGCTGCCGCCT
1 CTGCTTCTCTCGCTGCAGCCT
9235566 CTGCTT
1 CTGCTT
9235572 TAAGTTGTTG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.04, C:0.43, G:0.16, T:0.36
Consensus pattern (21 bp):
CTGCTTCTCTCGCTGCAGCCT
Found at i:9235537 original size:12 final size:12
Alignment explanation
Indices: 9235479--9235518 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
9235469 TTTTGAACCT
*
9235479 CTGCTTCTATCG
1 CTGCTTCTCTCG
*
9235491 CTGTTTCTCTCG
1 CTGCTTCTCTCG
9235503 CTGCTTCTCTCG
1 CTGCTTCTCTCG
9235515 CTGC
1 CTGC
9235519 AGCCTCTGCT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.03, C:0.38, G:0.17, T:0.42
Consensus pattern (12 bp):
CTGCTTCTCTCG
Found at i:9240193 original size:10 final size:11
Alignment explanation
Indices: 9240178--9240206 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
9240168 TCAACGTTAA
9240178 ATTAAAAA-AT
1 ATTAAAAAGAT
9240188 ATTAAAAAGAT
1 ATTAAAAAGAT
9240199 ATTAAAAA
1 ATTAAAAA
9240207 TTTATTTTGC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.44
11 10 0.56
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.28
Consensus pattern (11 bp):
ATTAAAAAGAT
Found at i:9241253 original size:147 final size:147
Alignment explanation
Indices: 9241118--9241497 Score: 697
Period size: 147 Copynumber: 2.6 Consensus size: 147
9241108 CATTTTAAGC
*
9241118 AAAGCGCCACTAAATATAAGATCAAACGATGTCATTTCCCCAACATTTAACTCAATCTTGTGGCA
1 AAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTCAATCTTGTGGCA
9241183 TTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAAT
66 TTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAAT
9241248 TTTGCGGCGTTTCATGT
131 TTTGCGGCGTTTCATGT
*
9241265 AAAGCGCCACTAAATATAAGATCAAACAATGTCGTTTCCCCAACATTTAACTCAATCTTGTGGCA
1 AAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTCAATCTTGTGGCA
9241330 TTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAAT
66 TTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAAT
9241395 TTTGCGGCGTTTCATGT
131 TTTGCGGCGTTTCATGT
* * * *
9241412 AAAACGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTTAAGCTTGTGGCG
1 AAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTCAATCTTGTGGCA
*
9241477 TTTCCAAACAAACACCACTAA
66 TTTCCAAACAAACGCCACTAA
9241498 AATAAAACAT
Statistics
Matches: 225, Mismatches: 8, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
147 225 1.00
ACGTcount: A:0.38, C:0.24, G:0.12, T:0.26
Consensus pattern (147 bp):
AAAGCGCCACTAAATATAAGATCAAACGATGTCGTTTCCCCAACATTTAACTCAATCTTGTGGCA
TTTCCAAACAAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAAT
TTTGCGGCGTTTCATGT
Found at i:9241273 original size:74 final size:73
Alignment explanation
Indices: 9241192--9241424 Score: 215
Period size: 74 Copynumber: 3.2 Consensus size: 73
9241182 ATTTCCAAAC
9241192 AAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAATTTTGCGGCG
1 AAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAATTTTGCGGCG
9241257 TTTCATGT
66 TTTCATGT
* * * *** * *** * *
9241265 AAAGCGCCACTAA-A-TATAAGATC-AAACAATGTCGTTTC-CCCAACATTTAACT-CAATCTTG
1 AAA-CGCCACTAATACCAT-TGA-CAAAACGACAACATTTCGATAAACA--TAAATACAATTTTG
* * ***
9241325 TGGCATTTCCAAAC
61 CGGCGTTT-CATGT
9241339 AAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAATTTTGCGGCG
1 AAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAATTTTGCGGCG
9241404 TTTCATGT
66 TTTCATGT
9241412 AAAACGCCACTAA
1 -AAACGCCACTAA
9241425 ATATAAGATC
Statistics
Matches: 114, Mismatches: 34, Indels: 23
0.67 0.20 0.13
Matches are distributed among these distances:
72 6 0.05
73 45 0.39
74 57 0.50
75 6 0.05
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.25
Consensus pattern (73 bp):
AAACGCCACTAATACCATTGACAAAACGACAACATTTCGATAAACATAAATACAATTTTGCGGCG
TTTCATGT
Found at i:9251535 original size:43 final size:44
Alignment explanation
Indices: 9251471--9251557 Score: 167
Period size: 43 Copynumber: 2.0 Consensus size: 44
9251461 GGCAGGCCAC
9251471 TATGGCACCAAAACGACGCCGTTTCGGCCTAACCCGTGCACTTA
1 TATGGCACCAAAACGACGCCGTTTCGGCCTAACCCGTGCACTTA
9251515 TATGGCACC-AAACGACGCCGTTTCGGCCTAACCCGTGCACTTA
1 TATGGCACCAAAACGACGCCGTTTCGGCCTAACCCGTGCACTTA
9251558 CCCGACCCGT
Statistics
Matches: 43, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
43 34 0.79
44 9 0.21
ACGTcount: A:0.24, C:0.34, G:0.21, T:0.21
Consensus pattern (44 bp):
TATGGCACCAAAACGACGCCGTTTCGGCCTAACCCGTGCACTTA
Found at i:9252117 original size:3 final size:3
Alignment explanation
Indices: 9252097--9252191 Score: 91
Period size: 3 Copynumber: 31.7 Consensus size: 3
9252087 TTAATTTTAA
* * * * * * * * *
9252097 TAT TTT TAT TAT TGT TAT TAT TAT TAA TAC CAT CAT CAT CAT CAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
9252145 TAT TAT TAA TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
9252192 AATTGTTTTA
Statistics
Matches: 79, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 79 1.00
ACGTcount: A:0.34, C:0.07, G:0.01, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:9257579 original size:17 final size:18
Alignment explanation
Indices: 9257545--9257590 Score: 64
Period size: 17 Copynumber: 2.8 Consensus size: 18
9257535 CCGTTATGTC
9257545 CGCGACCGCGA-C--AAA
1 CGCGACCGCGACCGAAAA
9257560 CGCGA-CGCGACCGAAAA
1 CGCGACCGCGACCGAAAA
9257577 CGCGACCGCGACCG
1 CGCGACCGCGACCG
9257591 CAATTTAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
14 5 0.19
15 6 0.22
17 8 0.30
18 8 0.30
ACGTcount: A:0.28, C:0.41, G:0.30, T:0.00
Consensus pattern (18 bp):
CGCGACCGCGACCGAAAA
Found at i:9259160 original size:2 final size:2
Alignment explanation
Indices: 9259148--9259185 Score: 69
Period size: 2 Copynumber: 19.5 Consensus size: 2
9259138 AGTCTAATAA
9259148 AT AT A- AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
9259186 AAACCTTTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:9275877 original size:26 final size:26
Alignment explanation
Indices: 9275848--9275909 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 26
9275838 TAGTACGTTA
*
9275848 ATATTTTATGTAATATATATTTT-AAT
1 ATATTTTATATAATAT-TATTTTAAAT
*
9275874 ATATTTGTATATTATATTATTTTAAAT
1 ATATTT-TATATAATATTATTTTAAAT
*
9275901 GTATTTTAT
1 ATATTTTAT
9275910 TTTAATTTTG
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
26 15 0.48
27 16 0.52
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (26 bp):
ATATTTTATATAATATTATTTTAAAT
Found at i:9276704 original size:19 final size:22
Alignment explanation
Indices: 9276672--9276718 Score: 57
Period size: 21 Copynumber: 2.3 Consensus size: 22
9276662 NNNNNNNTAG
*
9276672 AATA-TTAAACTAT-AT-TTTA
1 AATATTTAAACTATAATCATTA
9276691 AATATTTAAA-TATAATCATTA
1 AATATTTAAACTATAATCATTA
9276712 AATATTT
1 AATATTT
9276719 GTAATTAGAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
19 7 0.29
20 7 0.29
21 10 0.42
ACGTcount: A:0.49, C:0.04, G:0.00, T:0.47
Consensus pattern (22 bp):
AATATTTAAACTATAATCATTA
Found at i:9276945 original size:14 final size:13
Alignment explanation
Indices: 9276912--9276963 Score: 54
Period size: 14 Copynumber: 4.0 Consensus size: 13
9276902 AATATAAGAT
9276912 TATTAA-AATA-A
1 TATTAATAATATA
*
9276923 TACTAATAATATA
1 TATTAATAATATA
*
9276936 GTATTAATAAAATTA
1 -TATTAATAATA-TA
9276951 TATTAATAATATA
1 TATTAATAATATA
9276964 ACTACTTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 5 0.15
12 4 0.12
13 3 0.09
14 19 0.58
15 2 0.06
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (13 bp):
TATTAATAATATA
Found at i:9276946 original size:28 final size:27
Alignment explanation
Indices: 9276902--9276963 Score: 79
Period size: 28 Copynumber: 2.2 Consensus size: 27
9276892 GGGTAATAGA
*
9276902 AATATAAGATTATTAAAATAATACTAAT
1 AATAT-AGATTAATAAAATAATACTAAT
* *
9276930 AATATAGTATTAATAAAATTATATTAAT
1 AATATAG-ATTAATAAAATAATACTAAT
9276958 AATATA
1 AATATA
9276964 ACTACTTCTA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 2 0.07
28 28 0.93
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (27 bp):
AATATAGATTAATAAAATAATACTAAT
Found at i:9277930 original size:17 final size:17
Alignment explanation
Indices: 9277908--9277941 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
9277898 AGGTTAGAAG
9277908 GGGGAGGATGA-AGAAAA
1 GGGGAGGA-GATAGAAAA
9277925 GGGGAGGAGATAGAAAA
1 GGGGAGGAGATAGAAAA
9277942 ATAAAAGAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 14 0.88
ACGTcount: A:0.47, C:0.00, G:0.47, T:0.06
Consensus pattern (17 bp):
GGGGAGGAGATAGAAAA
Found at i:9278804 original size:17 final size:17
Alignment explanation
Indices: 9278777--9278811 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
9278767 TTCCTAAATT
9278777 TATATATATTTTTAAAAA
1 TATATATA-TTTTAAAAA
9278795 TATA-ATATTTTAAAAA
1 TATATATATTTTAAAAA
9278811 T
1 T
9278812 TCTAAACTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 10 0.59
17 3 0.18
18 4 0.24
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (17 bp):
TATATATATTTTAAAAA
Found at i:9279697 original size:60 final size:54
Alignment explanation
Indices: 9279619--9279766 Score: 163
Period size: 54 Copynumber: 2.6 Consensus size: 54
9279609 CATCTTCAGA
* * * *
9279619 TGAAGTGTTTTCTTCATCAGAATTATGACTAGTGACTTTTATGTCTTCATCCTGATTTGT
1 TGAAGTTTTTTCTTCATCAGAATTATAACTAGTAACTTTTA-----T-ATCCTGATCTGT
*
9279679 TGAAGTTTTTTCTTCATCAG-ATTGATTACTAGTAACTTTTATATCCTGATCTGT
1 TGAAGTTTTTTCTTCATCAGAATT-ATAACTAGTAACTTTTATATCCTGATCTGT
* *
9279733 TGAAATTTTTTCTTCATCAGATTTATAACTAGTA
1 TGAAGTTTTTTCTTCATCAGAATTATAACTAGTA
9279767 GCTTCTAAGT
Statistics
Matches: 79, Mismatches: 7, Indels: 10
0.82 0.07 0.10
Matches are distributed among these distances:
54 39 0.49
55 3 0.04
59 3 0.04
60 34 0.43
ACGTcount: A:0.25, C:0.14, G:0.14, T:0.47
Consensus pattern (54 bp):
TGAAGTTTTTTCTTCATCAGAATTATAACTAGTAACTTTTATATCCTGATCTGT
Found at i:9280003 original size:18 final size:19
Alignment explanation
Indices: 9279980--9280017 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
9279970 AGACTGGAAA
9279980 TCATATTTTTGT-TGTTTT
1 TCATATTTTTGTCTGTTTT
*
9279998 TCATATTTTTTTCTGTTTT
1 TCATATTTTTGTCTGTTTT
9280017 T
1 T
9280018 TTTATGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.11, C:0.08, G:0.08, T:0.74
Consensus pattern (19 bp):
TCATATTTTTGTCTGTTTT
Found at i:9280019 original size:22 final size:21
Alignment explanation
Indices: 9279985--9280029 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
9279975 GGAAATCATA
9279985 TTTTTGTTGTTTTTCAT-ATTT
1 TTTTTGTTGTTTTT-ATGATTT
*
9280006 TTTTCTGTTTTTTTTATGATTT
1 TTTT-TGTTGTTTTTATGATTT
9280028 TT
1 TT
9280030 ATATTTTTTA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.09, C:0.04, G:0.09, T:0.78
Consensus pattern (21 bp):
TTTTTGTTGTTTTTATGATTT
Found at i:9283940 original size:68 final size:70
Alignment explanation
Indices: 9283868--9284031 Score: 235
Period size: 71 Copynumber: 2.4 Consensus size: 70
9283858 TGGCAAAGTA
* **
9283868 GAAGTCATCATCAAATCCATGATGTGAC-AAGCCCAAATCCAGATGCAGAC-AAAAAGTCTTGCA
1 GAAGTCATCATCAAATCCATGATGAGACAAAGAACAAATCCAGATGCAGACAAAAAAGTCTTGCA
9283931 ACGTG
66 ACGTG
*
9283936 GAAGTCATCATCAAATCCATGATGAGACAAAAGAATAAATCCAGATGCAGACAAAAAAGTCTTGC
1 GAAGTCATCATCAAATCCATGATGAGAC-AAAGAACAAATCCAGATGCAGACAAAAAAGTCTTGC
9284001 AACGTG
65 AACGTG
* *
9284007 GAAG-CTATCATCAAAACAATGATGA
1 GAAGTC-ATCATCAAATCCATGATGA
9284032 CGCAAGTAGT
Statistics
Matches: 86, Mismatches: 6, Indels: 5
0.89 0.06 0.05
Matches are distributed among these distances:
68 27 0.31
70 20 0.23
71 39 0.45
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.19
Consensus pattern (70 bp):
GAAGTCATCATCAAATCCATGATGAGACAAAGAACAAATCCAGATGCAGACAAAAAAGTCTTGCA
ACGTG
Found at i:9285811 original size:25 final size:25
Alignment explanation
Indices: 9285781--9285830 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
9285771 TTTTTATTTA
* *
9285781 TTTATTAAATATTAATATAATTATT
1 TTTATTAAACATTAATATAAATATT
*
9285806 TTTATTTAACATTAATATAAATATT
1 TTTATTAAACATTAATATAAATATT
9285831 AATATAAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (25 bp):
TTTATTAAACATTAATATAAATATT
Found at i:9285844 original size:12 final size:12
Alignment explanation
Indices: 9285786--9285838 Score: 52
Period size: 12 Copynumber: 4.3 Consensus size: 12
9285776 ATTTATTTAT
9285786 TAAATATTAATA
1 TAAATATTAATA
* **
9285798 TAATTATTTTTA
1 TAAATATTAATA
* *
9285810 TTTAACATTAATA
1 -TAAATATTAATA
9285823 TAAATATTAATA
1 TAAATATTAATA
9285835 TAAA
1 TAAA
9285839 ATTTAAAATT
Statistics
Matches: 30, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
12 23 0.77
13 7 0.23
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (12 bp):
TAAATATTAATA
Found at i:9286779 original size:16 final size:15
Alignment explanation
Indices: 9286754--9286783 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9286744 CATAATATGT
9286754 AATTAATTTAAATAG
1 AATTAATTTAAATAG
9286769 AATTAAATTTAAATA
1 AATT-AATTTAAATA
9286784 TGTGAGTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
AATTAATTTAAATAG
Found at i:9288660 original size:16 final size:16
Alignment explanation
Indices: 9288639--9288669 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
9288629 AAGAGCAAAT
9288639 ACGCTAGTAAATAAAC
1 ACGCTAGTAAATAAAC
9288655 ACGCTAGTAAATAAA
1 ACGCTAGTAAATAAA
9288670 ATACTAGAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.16, G:0.13, T:0.19
Consensus pattern (16 bp):
ACGCTAGTAAATAAAC
Found at i:9289359 original size:29 final size:28
Alignment explanation
Indices: 9289293--9289359 Score: 64
Period size: 29 Copynumber: 2.3 Consensus size: 28
9289283 ATTACATGTG
* *
9289293 GAAAATAATAAAATAAATAACTAATTTAT
1 GAAAATAAAAAAATAAAT-ACTAATTTAA
**
9289322 GAAGTTAAAAAAATAAAT-CTTAATTTAAA
1 GAAAATAAAAAAATAAATAC-TAATTT-AA
9289351 GAAAATAAA
1 GAAAATAAA
9289360 CATAATTATC
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
27 1 0.03
28 6 0.20
29 23 0.77
ACGTcount: A:0.63, C:0.03, G:0.06, T:0.28
Consensus pattern (28 bp):
GAAAATAAAAAAATAAATACTAATTTAA
Found at i:9289365 original size:20 final size:20
Alignment explanation
Indices: 9289326--9289366 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
9289316 ATTTATGAAG
*
9289326 TTAAAAAAATAAATCTTAAT
1 TTAAAAAAATAAATCATAAT
9289346 TTAAAGAAAATAAA-CATAAT
1 TTAAA-AAAATAAATCATAAT
9289366 T
1 T
9289367 ATCTAAAAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.61, C:0.05, G:0.02, T:0.32
Consensus pattern (20 bp):
TTAAAAAAATAAATCATAAT
Found at i:9290655 original size:3 final size:3
Alignment explanation
Indices: 9290649--9290673 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
9290639 AAAATGAAAA
9290649 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
9290674 GAAATTACTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:9290728 original size:57 final size:58
Alignment explanation
Indices: 9290661--9290777 Score: 173
Period size: 57 Copynumber: 2.0 Consensus size: 58
9290651 GAAGAAGAAG
*
9290661 AAGAAGAAGAAGAGAAATTACTAAATATTCCTAATAAATCAAAGCTAAATGAAAAAAA
1 AAGAAGAAGAAAAGAAATTACTAAATATTCCTAATAAATCAAAGCTAAATGAAAAAAA
* * ** *
9290719 AAGAA-AAGAAAAGAAGTTACTAAATATTCCTACTTCATCAAAGCTAAATTAAAAAAA
1 AAGAAGAAGAAAAGAAATTACTAAATATTCCTAATAAATCAAAGCTAAATGAAAAAAA
9290776 AA
1 AA
9290778 AAATGAAACA
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
57 48 0.91
58 5 0.09
ACGTcount: A:0.59, C:0.10, G:0.10, T:0.21
Consensus pattern (58 bp):
AAGAAGAAGAAAAGAAATTACTAAATATTCCTAATAAATCAAAGCTAAATGAAAAAAA
Found at i:9293335 original size:23 final size:23
Alignment explanation
Indices: 9293275--9293401 Score: 152
Period size: 23 Copynumber: 5.6 Consensus size: 23
9293265 TTTAAGTGGA
9293275 TGTGTTTGGAGGGTATATTTGGT
1 TGTGTTTGGAGGGTATATTTGGT
*
9293298 TGTG-TTGGAGAGTATATTTGGT
1 TGTGTTTGGAGGGTATATTTGGT
* * *
9293320 TGTGCTTGGAGGGTATACTTAGT
1 TGTGTTTGGAGGGTATATTTGGT
* *
9293343 TGTGTTTGGAGGGCA-AATTGGT
1 TGTGTTTGGAGGGTATATTTGGT
*
9293365 TGTGTTTGGAGGCTATGA-TTGGT
1 TGTGTTTGGAGGGTAT-ATTTGGT
*
9293388 TGTGTTTGGTGGGT
1 TGTGTTTGGAGGGT
9293402 GATAGTTTTA
Statistics
Matches: 89, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
22 39 0.44
23 49 0.55
24 1 0.01
ACGTcount: A:0.14, C:0.03, G:0.39, T:0.43
Consensus pattern (23 bp):
TGTGTTTGGAGGGTATATTTGGT
Found at i:9293387 original size:68 final size:68
Alignment explanation
Indices: 9293275--9293401 Score: 170
Period size: 68 Copynumber: 1.9 Consensus size: 68
9293265 TTTAAGTGGA
* *
9293275 TGTGTTTGGAGGGTATATTTGGTTGTGTTGGAGAGTATATTTGGTTGTGCTTGGAGGGTATACTT
1 TGTGTTTGGAGGGCATAATTGGTTGTGTTGGAGAGTATATTTGGTTGTGCTTGGAGGGTATACTT
9293340 AGT
66 AGT
* *
9293343 TGTGTTTGGAGGGCA-AATTGGTTGTGTTTGGAG-GCTATGA-TTGGTTGTGTTTGGTGGGT
1 TGTGTTTGGAGGGCATAATTGGTTGTG-TTGGAGAG-TAT-ATTTGGTTGTGCTTGGAGGGT
9293402 GATAGTTTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 6
0.84 0.06 0.10
Matches are distributed among these distances:
67 11 0.21
68 40 0.77
69 1 0.02
ACGTcount: A:0.14, C:0.03, G:0.39, T:0.43
Consensus pattern (68 bp):
TGTGTTTGGAGGGCATAATTGGTTGTGTTGGAGAGTATATTTGGTTGTGCTTGGAGGGTATACTT
AGT
Found at i:9293394 original size:45 final size:46
Alignment explanation
Indices: 9293275--9293396 Score: 151
Period size: 45 Copynumber: 2.7 Consensus size: 46
9293265 TTTAAGTGGA
* * *
9293275 TGTGTTTGGAGGGTATATTTGGTTGTG-TTGGAGAGTATATTTGGT
1 TGTGTTTGGAGGGTATACTTGGTTGTGTTTGGAGAGCATAATTGGT
* * *
9293320 TGTGCTTGGAGGGTATACTTAGTTGTGTTTGGAGGGCA-AATTGGT
1 TGTGTTTGGAGGGTATACTTGGTTGTGTTTGGAGAGCATAATTGGT
*
9293365 TGTGTTTGGAGGCTATGA-TTGGTTGTGTTTGG
1 TGTGTTTGGAGGGTAT-ACTTGGTTGTGTTTGG
9293397 TGGGTGATAG
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
45 57 0.86
46 9 0.14
ACGTcount: A:0.15, C:0.03, G:0.39, T:0.43
Consensus pattern (46 bp):
TGTGTTTGGAGGGTATACTTGGTTGTGTTTGGAGAGCATAATTGGT
Found at i:9296065 original size:16 final size:15
Alignment explanation
Indices: 9296040--9296069 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
9296030 TTGGAAAAAC
9296040 ACAATTGTTCTAAAT
1 ACAATTGTTCTAAAT
9296055 ACAAGTTGTTCTAAA
1 ACAA-TTGTTCTAAA
9296070 CAATGGTTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.40, C:0.13, G:0.10, T:0.37
Consensus pattern (15 bp):
ACAATTGTTCTAAAT
Found at i:9298663 original size:15 final size:14
Alignment explanation
Indices: 9298642--9298677 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
9298632 ATAATCCTTA
*
9298642 ATAATTATCTTAAT
1 ATAATTATCCTAAT
9298656 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
9298671 ATAATTA
1 ATAATTA
9298678 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:9300569 original size:4 final size:4
Alignment explanation
Indices: 9300560--9300642 Score: 73
Period size: 4 Copynumber: 19.8 Consensus size: 4
9300550 ATTAATATCC
9300560 AAAT AAAT AAAT -AAT ATAAT ATAAT AAA- ATAAT AAAT AAAGT AAAT
1 AAAT AAAT AAAT AAAT A-AAT A-AAT AAAT A-AAT AAAT AAA-T AAAT
*
9300606 AAAAT AAA- ATGAT AAAT AAAT AAAT AAAT AAAAT AAA
1 -AAAT AAAT A-AAT AAAT AAAT AAAT AAAT -AAAT AAA
9300643 AATAAAAATT
Statistics
Matches: 68, Mismatches: 2, Indels: 18
0.77 0.02 0.20
Matches are distributed among these distances:
3 5 0.07
4 40 0.59
5 23 0.34
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.25
Consensus pattern (4 bp):
AAAT
Found at i:9300585 original size:29 final size:27
Alignment explanation
Indices: 9300560--9300641 Score: 76
Period size: 31 Copynumber: 2.9 Consensus size: 27
9300550 ATTAATATCC
*
9300560 AAATAAATAAATAATATAATATAATAAA
1 AAATAAATAAATAATATAATATAAT-AT
* *
9300588 ATAATAAATAAAGTAAATAAAATAAAATGAT
1 A-AATAAATAAA-T-AATATAATATAAT-AT
*
9300619 AAATAAATAAATAA-ATAAAATAA
1 AAATAAATAAATAATATAATATAA
9300642 AAATAAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
27 6 0.14
28 3 0.07
29 11 0.25
30 11 0.25
31 13 0.30
ACGTcount: A:0.72, C:0.00, G:0.02, T:0.26
Consensus pattern (27 bp):
AAATAAATAAATAATATAATATAATAT
Found at i:9300607 original size:34 final size:33
Alignment explanation
Indices: 9300560--9300649 Score: 110
Period size: 34 Copynumber: 2.6 Consensus size: 33
9300550 ATTAATATCC
* *
9300560 AAATAAATAAATAATATAATATAATAAA-ATAAT
1 AAATAAATAAATAAAATAAAATAATAAATA-AAT
*
9300593 AAATAAAGTAAATAAAATAAAATGATAAATAAAT
1 AAATAAA-TAAATAAAATAAAATAATAAATAAAT
9300627 AAATAAATAAAATAAAAATAAAA
1 AAATAAAT-AAAT-AAAATAAAA
9300650 ATTGGGTTGC
Statistics
Matches: 50, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
33 8 0.16
34 32 0.64
35 10 0.20
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (33 bp):
AAATAAATAAATAAAATAAAATAATAAATAAAT
Found at i:9300642 original size:5 final size:5
Alignment explanation
Indices: 9300572--9300649 Score: 56
Period size: 5 Copynumber: 15.4 Consensus size: 5
9300562 ATAAATAAAT
* * *
9300572 AATAT AATAT AATAA AATAATA AATAA AGT-A AATAA AATAA AATGATA
1 AATAA AATAA AATAA AAT-A-A AATAA AATAA AATAA AATAA AAT-A-A
9300620 AAT-A AAT-A AAT-A AATAA AATAAA AATAA AA
1 AATAA AATAA AATAA AATAA AAT-AA AATAA AA
9300650 ATTGGGTTGC
Statistics
Matches: 63, Mismatches: 3, Indels: 14
0.79 0.04 0.17
Matches are distributed among these distances:
4 15 0.24
5 32 0.51
6 8 0.13
7 8 0.13
ACGTcount: A:0.73, C:0.00, G:0.03, T:0.24
Consensus pattern (5 bp):
AATAA
Found at i:9300642 original size:29 final size:28
Alignment explanation
Indices: 9300560--9300648 Score: 110
Period size: 29 Copynumber: 3.1 Consensus size: 28
9300550 ATTAATATCC
*
9300560 AAATAAATAAATAATATAATATAATAAAAT
1 AAATAAATAAATAA-ATAAAATAA-AAAAT
*
9300590 -AATAAATAAAGTAAATAAAATAAAATGAT
1 AAATAAATAAA-TAAATAAAATAAAA-AAT
9300619 AAATAAATAAATAAATAAAAT-AAAAAT
1 AAATAAATAAATAAATAAAATAAAAAAT
9300646 AAA
1 AAA
9300649 AATTGGGTTG
Statistics
Matches: 53, Mismatches: 3, Indels: 9
0.82 0.05 0.14
Matches are distributed among these distances:
27 5 0.09
28 5 0.09
29 30 0.57
30 13 0.25
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.25
Consensus pattern (28 bp):
AAATAAATAAATAAATAAAATAAAAAAT
Found at i:9304602 original size:15 final size:14
Alignment explanation
Indices: 9304581--9304616 Score: 54
Period size: 15 Copynumber: 2.5 Consensus size: 14
9304571 ATAATCCTTA
*
9304581 ATAATTATCTTAAT
1 ATAATTATCCTAAT
9304595 ATTAATTATCCTAAT
1 A-TAATTATCCTAAT
9304610 ATAATTA
1 ATAATTA
9304617 AAATAGAGTC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
14 7 0.35
15 13 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (14 bp):
ATAATTATCCTAAT
Found at i:9305355 original size:3 final size:3
Alignment explanation
Indices: 9305347--9305384 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
9305337 TTCTTACCAT
9305347 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
9305385 GAAGTTTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:9306916 original size:47 final size:47
Alignment explanation
Indices: 9306821--9306931 Score: 136
Period size: 47 Copynumber: 2.3 Consensus size: 47
9306811 TATTCTAATT
* *
9306821 AAAAATATGAAAAAAAGTTATAAAAATTATAAAAAAAATTAATTATAA
1 AAAAATATGAAAAAAAGTTATAAAAATTACAAAAAAAA-TAATAATAA
* * *
9306869 AAAAATAT-AAAAAAGGTTATAAAACTTACAAAAGCATAA-AATAATAA
1 AAAAATATGAAAAAAAGTTATAAAAATTACAAAA--AAAATAATAATAA
9306916 AAAAATATGAAAAAAA
1 AAAAATATGAAAAAAA
9306932 TGTATATTTT
Statistics
Matches: 54, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
47 37 0.69
48 14 0.26
49 3 0.06
ACGTcount: A:0.69, C:0.03, G:0.05, T:0.23
Consensus pattern (47 bp):
AAAAATATGAAAAAAAGTTATAAAAATTACAAAAAAAATAATAATAA
Found at i:9316614 original size:88 final size:88
Alignment explanation
Indices: 9316455--9316653 Score: 219
Period size: 88 Copynumber: 2.3 Consensus size: 88
9316445 CTTCGATCCA
* * * *
9316455 CTCCACTGC-ACTTCAGAGAGATACGGATTATAGCTTCAATCCACTCTGCTGTAACTTCAAGGGG
1 CTCCACTGCAACTTCAGGGAGATACGGATTATAGCTTCAATCCACTCTACTGCAACTTCAAGGAG
* * *
9316519 ACGAGATTCGTGGTTTTC-A-TTCG
66 ACAAGATTCGT-ATCTTCAACTT-G
* **
9316542 CTCCACTGCAAC-TCTAGGGAGATA-GGATTAATAGCTTTAATCTTCTCTACTGCAACTTCAAGG
1 CTCCACTGCAACTTC-AGGGAGATACGGATT-ATAGCTTCAATCCACTCTACTGCAACTTCAAGG
* *
9316605 AGATAAGATTGGTATCTTCAACTTG
64 AGACAAGATTCGTATCTTCAACTTG
9316630 CTCCACTGCAACTTCAGGGAGATA
1 CTCCACTGCAACTTCAGGGAGATA
9316654 AGGTTGCTTA
Statistics
Matches: 94, Mismatches: 12, Indels: 11
0.80 0.10 0.09
Matches are distributed among these distances:
87 20 0.21
88 70 0.74
89 4 0.04
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30
Consensus pattern (88 bp):
CTCCACTGCAACTTCAGGGAGATACGGATTATAGCTTCAATCCACTCTACTGCAACTTCAAGGAG
ACAAGATTCGTATCTTCAACTTG
Found at i:9316681 original size:45 final size:44
Alignment explanation
Indices: 9316541--9316928 Score: 268
Period size: 44 Copynumber: 8.6 Consensus size: 44
9316531 GTTTTCATTC
* ** * *
9316541 GCTCCACTGCAAC-TCTAGGGAGATAGGATTAATAGCTTTAATCT
1 GCTCCACTGCAACTTC-AGGGAGATAAGATTGTTATCTTCAATCT
* * * *
9316585 TCTCTACTGCAACTTCAAGGAGATAAGATTGGTATCTTCAA-CTT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGTTATCTTCAATC-T
* *
9316629 GCTCCACTGCAACTTCAGGGAGATAAGGTTGCTTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTG-TTATCTTCAATCT
* * *
9316674 GCTCCACTGCAACTTCAGGGAGATAAGACTTATTATGGTAGGTTTAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAGA-TTGTTA---T--CTTCAATCT
* * * * * * *
9316724 GAC-CTACTGCAACTTTAGAGG-TATAGGA-T-TAATCGTTTTAATCC
1 G-CTCCACTGCAACTTCAG-GGAGATAAGATTGTTATC--TTCAATCT
* ** ** *
9316768 ACTCCACTGCAACTTCAAAGAGAT-AGAATTAATAGCTTCAATCT
1 GCTCCACTGCAACTTCAGGGAGATAAG-ATTGTTATCTTCAATCT
* * * * *
9316812 GCTCTACTGCAATTTCAGGGAGATTAGATTGGTATCTTCAACCT
1 GCTCCACTGCAACTTCAGGGAGATAAGATTGTTATCTTCAATCT
* * * *
9316856 GCTCCACTGTAACTTTAGGGAGATAAGGTTTGTTATCTTCAGTCT
1 GCTCCACTGCAACTTCAGGGAGATAA-GATTGTTATCTTCAATCT
9316901 GCTCCACTGCAACTTCAGGGAGATAAGA
1 GCTCCACTGCAACTTCAGGGAGATAAGA
9316929 CTTGGTATGG
Statistics
Matches: 264, Mismatches: 59, Indels: 42
0.72 0.16 0.12
Matches are distributed among these distances:
43 4 0.02
44 141 0.53
45 82 0.31
46 5 0.02
47 2 0.01
48 2 0.01
50 25 0.09
51 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.20, T:0.31
Consensus pattern (44 bp):
GCTCCACTGCAACTTCAGGGAGATAAGATTGTTATCTTCAATCT
Found at i:9316766 original size:183 final size:182
Alignment explanation
Indices: 9316546--9316882 Score: 437
Period size: 183 Copynumber: 1.8 Consensus size: 182
9316536 CATTCGCTCC
** * *
9316546 ACTGCAACTCTAGGGAGATAGGATTAATAGCTTTAATCTTCTCTACTGCAACTTCAAGGAGATA-
1 ACTGCAACTCTAGGGAGATAGGATTAATAGCTTTAATCCACTCCACTGCAACTTCAAAGAGATAG
** * * * **
9316610 AGATTGGTATCTTCAA-CTTGCTCCACTGCAACTTCAGGGAGATAAGGTTGCTTATCTTCAGTCT
66 A-ATTAATAGCTTCAATC-TGCTCCACTGCAACTTCAGGGAGATAAGATTG-GTATCTTCAACCT
9316674 GCTCCACTGCAACTTCAGGGAGATAAGACTTATTATGGTAGGTTTAATCTGACCT
128 GCTCCACTGCAACTTCAGGGAGATAAGACTTATTATGGTAGGTTTAATCTGACCT
* * * *
9316729 ACTGCAACTTTAGAGG-TATAGGATTAATCGTTTTAATCCACTCCACTGCAACTTCAAAGAGATA
1 ACTGCAACTCTAG-GGAGATAGGATTAATAGCTTTAATCCACTCCACTGCAACTTCAAAGAGATA
* * *
9316793 GAATTAATAGCTTCAATCTGCTCTACTGCAATTTCAGGGAGATTAGATTGGTATCTTCAACCTGC
65 GAATTAATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGC
* *
9316858 TCCACTGTAACTTTAGGGAGATAAG
130 TCCACTGCAACTTCAGGGAGATAAG
9316883 GTTTGTTATC
Statistics
Matches: 131, Mismatches: 20, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
182 35 0.27
183 92 0.70
184 4 0.03
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.31
Consensus pattern (182 bp):
ACTGCAACTCTAGGGAGATAGGATTAATAGCTTTAATCCACTCCACTGCAACTTCAAAGAGATAG
AATTAATAGCTTCAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTGGTATCTTCAACCTGCT
CCACTGCAACTTCAGGGAGATAAGACTTATTATGGTAGGTTTAATCTGACCT
Found at i:9316940 original size:227 final size:227
Alignment explanation
Indices: 9316542--9317081 Score: 732
Period size: 227 Copynumber: 2.4 Consensus size: 227
9316532 TTTTCATTCG
* * *
9316542 CTCCACTGCAAC-TCTAGGGAGATAGGATTAATAGCTTTAATCTTCTCTACTGCAACTTCAAGGA
1 CTCCACTGCAACTTC-AGGGAGATAGAATTAATAGCTTCAATCTGCTCTACTGCAACTTCAAGGA
*
9316606 GATAAGATTGGTATCTTCAACTTGCTCCACTGCAACTTCAGGGAGATAAGGTTGCTTATCTTCAG
65 GATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTGCTTATCTTCAG
* *
9316671 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTATTATGGTAGGTTTAA-TCTGACCTACTGCA
130 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTAGTATGGTAGATTTAATTC-GACCTACTGCA
* * *
9316735 ACTTTAGAGGTATAGGATTAATCGTTTTAATCCA
194 ACTTCAGAGGTATAGGACTAATCATTTTAATCCA
** * *
9316769 CTCCACTGCAACTTCAAAGAGATAGAATTAATAGCTTCAATCTGCTCTACTGCAATTTCAGGGAG
1 CTCCACTGCAACTTCAGGGAGATAGAATTAATAGCTTCAATCTGCTCTACTGCAACTTCAAGGAG
* * *
9316834 ATTAGATTGGTATCTTCAACCTGCTCCACTGTAACTTTAGGGAGATAAGGTTTG-TTATCTTCAG
66 ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGG-TTGCTTATCTTCAG
*
9316898 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGGTATGGTAGATTTAATTCGACCTACTGCAA
130 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTTAGTATGGTAGATTTAATTCGACCTACTGCAA
* *
9316963 CTTCAGAGGTATAGGACTCATCATTTTAATCCG
195 CTTCAGAGGTATAGGACTAATCATTTTAATCCA
* * ** * * *
9316996 CTCCACTACAACTTCAGGGAGATAGGATTTGTCATG-TTCAGTCTACTCTACTGCAACCTC-AGT
1 CTCCACTGCAACTTCAGGGAGATAGAATTAAT-A-GCTTCAATCTGCTCTACTGCAACTTCAAG-
*
9317059 GAGATAAGACTT-GTAGCTTCAAC
63 GAGATAAGA-TTGGTATCTTCAAC
9317082 TTTCTTTACT
Statistics
Matches: 274, Mismatches: 32, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
227 225 0.82
228 46 0.17
229 3 0.01
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.31
Consensus pattern (227 bp):
CTCCACTGCAACTTCAGGGAGATAGAATTAATAGCTTCAATCTGCTCTACTGCAACTTCAAGGAG
ATAAGATTGGTATCTTCAACCTGCTCCACTGCAACTTCAGGGAGATAAGGTTGCTTATCTTCAGT
CTGCTCCACTGCAACTTCAGGGAGATAAGACTTAGTATGGTAGATTTAATTCGACCTACTGCAAC
TTCAGAGGTATAGGACTAATCATTTTAATCCA
Found at i:9317315 original size:45 final size:45
Alignment explanation
Indices: 9317109--9317364 Score: 150
Period size: 45 Copynumber: 5.8 Consensus size: 45
9317099 GTCTATTGCG
* * *** * * *
9317109 ATCTGCTCTACTGCAACTTCAGAGAGATAAGA-TCCATCATTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTCA
* * *
9317153 ATCCGCTCCACTGCAACTTCAGGGAGATAGGACTAG-TAACTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTCA
* * * * * *
9317197 ATTTACTCCATTGCAACTTCAGGGAAATAAGA-TTGGTTTTA-GTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTT-G-TTAACTTCA
* ** * * ** *
9317242 GTCTGCTCCTTTGCAACTTCAAGAAGATAAGACTTGTTGGCTTTA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTCA
* * *
9317287 ATCTGCTCCACTGCAACTTTAGGGAGATAAGATTTG-CAATCTTCA
1 ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAA-CTTCA
* *
9317332 GTCTG-TCCCACTGC--CTTCAGGGGGATAAGACTT
1 ATCTGCT-CCACTGCAACTTCAGGGAGATAAGACTT
9317365 ACTTTCTTCA
Statistics
Matches: 160, Mismatches: 44, Indels: 17
0.72 0.20 0.08
Matches are distributed among these distances:
43 17 0.11
44 63 0.39
45 76 0.47
46 4 0.03
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (45 bp):
ATCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTTAACTTCA
Found at i:9317495 original size:21 final size:21
Alignment explanation
Indices: 9317452--9317495 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
9317442 GATTCACTGC
* *
9317452 CTTCAGCTTTAATCCGTTGCA
1 CTTCAGCTTTAATCCATTCCA
*
9317473 CTTCAGCTTTAATCTATTCCA
1 CTTCAGCTTTAATCCATTCCA
9317494 CT
1 CT
9317496 GCAATGCCAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.09, T:0.41
Consensus pattern (21 bp):
CTTCAGCTTTAATCCATTCCA
Found at i:9317913 original size:132 final size:132
Alignment explanation
Indices: 9317529--9317889 Score: 512
Period size: 132 Copynumber: 2.7 Consensus size: 132
9317519 GCTATTTTTC
* * *
9317529 GATCTGCTCCACTACT-ATTTAGTGAGACAGGATCTACAATCTTCATCCTACTCCACTGCTGCTC
1 GATCTGCTCCACTACTGCTTAAG-GAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTC
* *
9317593 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTT-GAGAAGATAAGATTCATCGT
65 AAGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTAG-GAAGATAAGATTCACCGT
9317657 CTTT
129 CTTT
* * **
9317661 GATCTGCTCCACTACTGCTTAGGGAAACAGGATCTGTAATCTTCAACCTACTCCACTGCTGCTCA
1 GATCTGCTCCACTACTGCTTAAGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCA
**
9317726 AGGAGATAGGACTGGCAGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCACCGTCT
66 AGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCACCGTCT
9317791 TT
131 TT
* * * * *
9317793 GATCTGCTCCACTACTGCTTAAGGAGATAGGATTTACAATTTTCAAACTACTCCACTGTTGCTCA
1 GATCTGCTCCACTACTGCTTAAGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCA
* *
9317858 AGGAGATAAGG-CTGGTGGTTTCAATCTGCTTC
66 AGGAGAT-AGGACTGGTGGCTTAAATCTGCTTC
9317890 ACTGCCAATA
Statistics
Matches: 202, Mismatches: 24, Indels: 6
0.87 0.10 0.03
Matches are distributed among these distances:
132 195 0.97
133 7 0.03
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (132 bp):
GATCTGCTCCACTACTGCTTAAGGAGACAGGATCTACAATCTTCAACCTACTCCACTGCTGCTCA
AGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCACCGTCT
TT
Found at i:9317935 original size:132 final size:132
Alignment explanation
Indices: 9317529--9317937 Score: 407
Period size: 132 Copynumber: 3.1 Consensus size: 132
9317519 GCTATTTTTC
* * * **
9317529 GATCTGCTCCACTACT-ATTTAGTGAGACAGGATCTACAATCTTCATCCTACTCCACTGCTGCTC
1 GATCTGCTCCACTACTGCTTAAG-GAAACAGGATCTACAATCTTCAAACTACTCCACTGCTGCTC
* ** * * * * *
9317593 AGGGAGATAGGACTGGTGGCTTAAATCTGCTTCCCTACTACCTT-GAGAAGATAAGATTCATC-G
65 AAGGAGATAGGACTGGCAGCTTAAATCTGCTTCACTACCACATTAG-GAAGACAAGATTCA-CAA
9317656 TCTTT
128 TCTTT
* ** *
9317661 GATCTGCTCCACTACTGCTTAGGGAAACAGGATCTGTAATCTTCAACCTACTCCACTGCTGCTCA
1 GATCTGCTCCACTACTGCTTAAGGAAACAGGATCTACAATCTTCAAACTACTCCACTGCTGCTCA
* * * * **
9317726 AGGAGATAGGACTGGCAGCTTAAATCTGCTTCCCTACTACCTTAGGAAGATAAGATTCACCGTCT
66 AGGAGATAGGACTGGCAGCTTAAATCTGCTTCACTACCACATTAGGAAGACAAGATTCACAATCT
9317791 TT
131 TT
* * * * *
9317793 GATCTGCTCCACTACTGCTTAAGGAGATAGGATTTACAATTTTCAAACTACTCCACTGTTGCTCA
1 GATCTGCTCCACTACTGCTTAAGGAAACAGGATCTACAATCTTCAAACTACTCCACTGCTGCTCA
** * * *
9317858 AGGAGATAAGG-CTGGTGGTTTCAATCTGCTTCACTGCCA-ATATAGGAAGACAAGATAT-ACAA
66 AGGAGAT-AGGACTGGCAGCTTAAATCTGCTTCACTACCACAT-TAGGAAGACAAGAT-TCACAA
9317920 TCTTT
128 TCTTT
* *
9317925 AATCTACTCCACT
1 GATCTGCTCCACT
9317938 GCTACTCAGG
Statistics
Matches: 239, Mismatches: 32, Indels: 12
0.84 0.11 0.04
Matches are distributed among these distances:
131 2 0.01
132 229 0.96
133 8 0.03
ACGTcount: A:0.27, C:0.24, G:0.18, T:0.30
Consensus pattern (132 bp):
GATCTGCTCCACTACTGCTTAAGGAAACAGGATCTACAATCTTCAAACTACTCCACTGCTGCTCA
AGGAGATAGGACTGGCAGCTTAAATCTGCTTCACTACCACATTAGGAAGACAAGATTCACAATCT
TT
Found at i:9318082 original size:89 final size:89
Alignment explanation
Indices: 9317865--9318541 Score: 808
Period size: 89 Copynumber: 7.6 Consensus size: 89
9317855 TCAAGGAGAT
* * * * * * * * *
9317865 AAGGCTGGTGGT-TTCAATCTGCTTCACTGCCAATATAGGAAGACAAGATATACAATCTTTAATC
1 AAGGCTGGT-GTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTC
* * * **
9317929 TACTCCACTGCT--ACTCAGGGAGAT
65 TGCTCCGCTG-TAAACTCAGAGAGGC
* * * * * *
9317953 AAGCCTGGTGTTTTCGATCTGCTTCACTGCCAATACAGGAAGATAAGATCTGTTATCTTCAGTCT
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
9318018 GCTCCGCTGTAAACTCAGAGAGGC
66 GCTCCGCTGTAAACTCAGAGAGGC
* * *
9318042 AATGCTGGTGTCTTCGATCTACTTCGCTGCTC-ATATAGGAAGACAAGATATGCTATCTTCAGTC
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGC-CAATACAGGAAGACAAGATCTGCTATCTTCAGTC
* *
9318106 TGCTCCACTGTAAACTCAGGGAGGC
65 TGCTCCGCTGTAAACTCAGAGAGGC
* * * * * *
9318131 AAGACTGGTGCCTTCGATATACTTCGCTGCCAATACAAGAAAACAAGATCTACTATCTTCAGTCT
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
*
9318196 GCTCCGCTGTAAACTCAGGGAGGC
66 GCTCCGCTGTAAACTCAGAGAGGC
* * * * * *
9318220 AAGGCTGGTGTTTTCGATCTGCTTCACTGCCAGTACAGGAAGACAAGATCTACCATCTTCAGTCT
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
*
9318285 GCTCCACTGTAAACTCA-AGGAGGC
66 GCTCCGCTGTAAACTCAGA-GAGGC
* * * * *
9318309 AATGCTGGTGTCTTCGATCTACTTTGCTACCAATACAGGAAGATAAGATCTGTTATCTTCAGTCT
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
*
9318374 GCTCCGCTGTAAACTCAG-GTAGGT
66 GCTCCGCTGTAAACTCAGAG-AGGC
* * *
9318398 AAGGCTGGTGCCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGATTTGCTATCTTCAGTCT
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
9318463 GCTCCGCTGTAAACTCAGAGAGGC
66 GCTCCGCTGTAAACTCAGAGAGGC
* * *
9318487 AAGGCTGGTGCCTTCGATGTACTTAGCTGCCAATACAGGAAGACAAGATCTGCTA
1 AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTA
9318542 CTTTCAGCCT
Statistics
Matches: 508, Mismatches: 72, Indels: 17
0.85 0.12 0.03
Matches are distributed among these distances:
87 3 0.01
88 61 0.12
89 442 0.87
90 2 0.00
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (89 bp):
AAGGCTGGTGTCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATCTGCTATCTTCAGTCT
GCTCCGCTGTAAACTCAGAGAGGC
Found at i:9318423 original size:267 final size:267
Alignment explanation
Indices: 9317854--9318537 Score: 901
Period size: 267 Copynumber: 2.6 Consensus size: 267
9317844 TCCACTGTTG
* * ** * * * * *
9317854 CTCAAGGAGATAAGGCTGGTGGTTTCAATCTGCTTCACTGCCAATATAGGAAGACAAGATATACA
1 CTCAGGGAGGTAAGGCTGGTGCCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATATACT
* * * * ** *
9317919 ATCTTTAATCTACTCCACTGCT--ACTCAGGGAGATAAGCCTGGTGTTTTCGATCTGCTTCACTG
66 ATCTTCAGTCTGCTCCGCTG-TAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTG
* *** *
9317982 CCAATACAGGAAGATAAGATCTGTTATCTTCAGTCTGCTCCGCTGTAAACTCAGAGAGGCAATGC
130 CCAATACAGGAAGACAAGATCTACCATCTTCAGTCTGCTCCACTGTAAACTCAGAGAGGCAATGC
* *
9318047 TGGTGTCTTCGATCTACTTCGCTGCTCATATAGGAAGACAAGATATGCTATCTTCAGTCTGCTCC
195 TGGTGTCTTCGATCTACTTCGCTACTCATACAGGAAGACAAGATATGCTATCTTCAGTCTGCTCC
9318112 ACTGTAAA
260 ACTGTAAA
* * * * * *
9318120 CTCAGGGAGGCAAGACTGGTGCCTTCGATATACTTCGCTGCCAATACAAGAAAACAAGATCTACT
1 CTCAGGGAGGTAAGGCTGGTGCCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATATACT
9318185 ATCTTCAGTCTGCTCCGCTGTAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGC
66 ATCTTCAGTCTGCTCCGCTGTAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGC
*
9318250 CAGTACAGGAAGACAAGATCTACCATCTTCAGTCTGCTCCACTGTAAACTCA-AGGAGGCAATGC
131 CAATACAGGAAGACAAGATCTACCATCTTCAGTCTGCTCCACTGTAAACTCAGA-GAGGCAATGC
* * * *
9318314 TGGTGTCTTCGATCTACTTTGCTAC-CAATACAGGAAGATAAGATCTGTTATCTTCAGTCTGCTC
195 TGGTGTCTTCGATCTACTTCGCTACTC-ATACAGGAAGACAAGATATGCTATCTTCAGTCTGCTC
*
9318378 CGCTGTAAA
259 CACTGTAAA
* * * *
9318387 CTCAGGTAGGTAAGGCTGGTGCCTTCGATCTACTTCGCTACCAATACAGGAAGACAAGATTTGCT
1 CTCAGGGAGGTAAGGCTGGTGCCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATATACT
* ** * *
9318452 ATCTTCAGTCTGCTCCGCTGTAAACTCAGAGAGGCAAGGCTGGTGCCTTCGATGTACTT-AGCTG
66 ATCTTCAGTCTGCTCCGCTGTAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCA-CTG
9318516 CCAATACAGGAAGACAAGATCT
130 CCAATACAGGAAGACAAGATCT
9318538 GCTACTTTCA
Statistics
Matches: 363, Mismatches: 50, Indels: 9
0.86 0.12 0.02
Matches are distributed among these distances:
265 1 0.00
266 69 0.19
267 293 0.81
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (267 bp):
CTCAGGGAGGTAAGGCTGGTGCCTTCGATCTACTTCGCTGCCAATACAGGAAGACAAGATATACT
ATCTTCAGTCTGCTCCGCTGTAAACTCAGGGAGGCAAGGCTGGTGTTTTCGATCTGCTTCACTGC
CAATACAGGAAGACAAGATCTACCATCTTCAGTCTGCTCCACTGTAAACTCAGAGAGGCAATGCT
GGTGTCTTCGATCTACTTCGCTACTCATACAGGAAGACAAGATATGCTATCTTCAGTCTGCTCCA
CTGTAAA
Found at i:9326533 original size:38 final size:38
Alignment explanation
Indices: 9326491--9326604 Score: 100
Period size: 40 Copynumber: 3.2 Consensus size: 38
9326481 ATATAAAATA
9326491 TAAAAATATAAAAATATCCAATATGAATATCATTAGAT
1 TAAAAATATAAAAATATCCAATATGAATATCATTAGAT
* * * **
9326529 TAAAAACTTATAAATATTTCTAATAT---T-T-AAAAG-T
1 TAAAAA--TATAAAAATATCCAATATGAATATCATTAGAT
*
9326563 T-CAAATAT-AAAATATCCAATATGAATATCATTAGAT
1 TAAAAATATAAAAATATCCAATATGAATATCATTAGAT
9326599 TAAAAA
1 TAAAAA
9326605 CTTATAAATA
Statistics
Matches: 55, Mismatches: 12, Indels: 19
0.64 0.14 0.22
Matches are distributed among these distances:
30 11 0.20
31 3 0.05
33 4 0.07
34 3 0.05
35 6 0.11
36 3 0.05
37 4 0.07
38 6 0.11
40 15 0.27
ACGTcount: A:0.54, C:0.08, G:0.04, T:0.34
Consensus pattern (38 bp):
TAAAAATATAAAAATATCCAATATGAATATCATTAGAT
Found at i:9326580 original size:70 final size:71
Alignment explanation
Indices: 9326494--9326635 Score: 277
Period size: 70 Copynumber: 2.0 Consensus size: 71
9326484 TAAAATATAA
9326494 AAATATAAAAATATCCAATATGAATATCATTAGATTAAAAACTTATAAATATTTCTAATATTTAA
1 AAATATAAAAATATCCAATATGAATATCATTAGATTAAAAACTTATAAATATTTCTAATATTTAA
9326559 AAGTTC
66 AAGTTC
9326565 AAATAT-AAAATATCCAATATGAATATCATTAGATTAAAAACTTATAAATATTTCTAATATTTAA
1 AAATATAAAAATATCCAATATGAATATCATTAGATTAAAAACTTATAAATATTTCTAATATTTAA
9326629 AAGTTC
66 AAGTTC
9326635 A
1 A
9326636 GGTGCAATAG
Statistics
Matches: 71, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
70 65 0.92
71 6 0.08
ACGTcount: A:0.51, C:0.08, G:0.04, T:0.37
Consensus pattern (71 bp):
AAATATAAAAATATCCAATATGAATATCATTAGATTAAAAACTTATAAATATTTCTAATATTTAA
AAGTTC
Found at i:9328819 original size:36 final size:36
Alignment explanation
Indices: 9328744--9328819 Score: 84
Period size: 36 Copynumber: 2.1 Consensus size: 36
9328734 CATACATACG
*
9328744 TTTTATAATATATACATATACGTACACATTTTTTAAT
1 TTTTATAATATATACATATACG-ACACATTTTATAAT
* *
9328781 TTTTATAA-ATATATATATAC-ACATACTTTTATATAT
1 TTTTATAATATATACATATACGACACA-TTTTATA-AT
9328817 TTT
1 TTT
9328820 CTATGTTTCA
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
34 4 0.12
35 6 0.18
36 16 0.47
37 8 0.24
ACGTcount: A:0.38, C:0.09, G:0.01, T:0.51
Consensus pattern (36 bp):
TTTTATAATATATACATATACGACACATTTTATAAT
Found at i:9328952 original size:23 final size:22
Alignment explanation
Indices: 9328924--9328967 Score: 70
Period size: 23 Copynumber: 2.0 Consensus size: 22
9328914 ATAATTCACA
*
9328924 TACATATATATTTTTCTTATATG
1 TACATATATATATTT-TTATATG
9328947 TACATATATATATTTTTATAT
1 TACATATATATATTTTTATAT
9328968 TTTATAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 6 0.30
23 14 0.70
ACGTcount: A:0.34, C:0.07, G:0.02, T:0.57
Consensus pattern (22 bp):
TACATATATATATTTTTATATG
Found at i:9336073 original size:23 final size:22
Alignment explanation
Indices: 9336043--9336085 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
9336033 NNNNNNNNNN
*
9336043 ACATATATATTTTTCTTATATGT
1 ACATATATATATTT-TTATATGT
9336066 ACATATATATATTTTTATAT
1 ACATATATATATTTTTATAT
9336086 TTTATAATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.35, C:0.07, G:0.02, T:0.56
Consensus pattern (22 bp):
ACATATATATATTTTTATATGT
Found at i:9339390 original size:53 final size:54
Alignment explanation
Indices: 9339304--9339408 Score: 194
Period size: 53 Copynumber: 2.0 Consensus size: 54
9339294 ATTTCCTTTA
9339304 TTATTTTTCTTAGAAAAAAAAATCTTCATTTCGAGAAATCAATGCGTCACATTT
1 TTATTTTTCTTAGAAAAAAAAATCTTCATTTCGAGAAATCAATGCGTCACATTT
*
9339358 TTATTTTTTTTAG-AAAAAAAATCTTCATTTCGAGAAATCAATGCGTCACAT
1 TTATTTTTCTTAGAAAAAAAAATCTTCATTTCGAGAAATCAATGCGTCACAT
9339409 CCAATACGTT
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
53 38 0.76
54 12 0.24
ACGTcount: A:0.37, C:0.14, G:0.10, T:0.39
Consensus pattern (54 bp):
TTATTTTTCTTAGAAAAAAAAATCTTCATTTCGAGAAATCAATGCGTCACATTT
Found at i:9339934 original size:20 final size:21
Alignment explanation
Indices: 9339911--9339959 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
9339901 ATAAATGTAT
*
9339911 AAAGTATATAAAAAAT-TAGA
1 AAAGTATATAAAAAATATAAA
*
9339931 AAAGTAAAATAAAAAATATAAA
1 AAAGT-ATATAAAAAATATAAA
9339953 AAAGTAT
1 AAAGTAT
9339960 GTAGGTATAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 5 0.21
21 11 0.46
22 8 0.33
ACGTcount: A:0.69, C:0.00, G:0.08, T:0.22
Consensus pattern (21 bp):
AAAGTATATAAAAAATATAAA
Found at i:9339944 original size:21 final size:22
Alignment explanation
Indices: 9339918--9339958 Score: 66
Period size: 21 Copynumber: 1.9 Consensus size: 22
9339908 TATAAAGTAT
*
9339918 ATAAAAAAT-TAGAAAAGTAAA
1 ATAAAAAATATAAAAAAGTAAA
9339939 ATAAAAAATATAAAAAAGTA
1 ATAAAAAATATAAAAAAGTA
9339959 TGTAGGTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.73, C:0.00, G:0.07, T:0.20
Consensus pattern (22 bp):
ATAAAAAATATAAAAAAGTAAA
Found at i:9341592 original size:86 final size:86
Alignment explanation
Indices: 9341477--9341663 Score: 311
Period size: 86 Copynumber: 2.2 Consensus size: 86
9341467 AAATGATGTT
* * *
9341477 GATGCGATCTGTTCTACTTGTGGTTTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGC
1 GATGTGATCTGCTCTACTTGTGATTTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGC
*
9341542 AACTTCAGAGAGATAAGACTA
66 AACTTCAGAGAGATAACACTA
*
9341563 GATGTGATCTGCTGTACTTGTGATTTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGC
1 GATGTGATCTGCTCTACTTGTGATTTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGC
*
9341628 AACTTCAGGGAGATAACACTA
66 AACTTCAGAGAGATAACACTA
*
9341649 GATGTGATATGCTCT
1 GATGTGATCTGCTCT
9341664 CTGCAACTTC
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
86 93 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (86 bp):
GATGTGATCTGCTCTACTTGTGATTTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGC
AACTTCAGAGAGATAACACTA
Found at i:9341642 original size:44 final size:44
Alignment explanation
Indices: 9341501--9341818 Score: 158
Period size: 44 Copynumber: 7.3 Consensus size: 44
9341491 TACTTGTGGT
*
9341501 TTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
1 TTCAGAGAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
* * * * ** ** *
9341545 TTCAGAGAGATAAGACTAGAT--GTGA-TCTGCTGTACTTGTGAT
1 TTCAGAGAGATAAGACTTGCTCACTTAGTCTGCTCCAC-TGCAAC
*
9341587 TTCAGAAAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
1 TTCAGAGAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
* * * * * * * *
9341631 TTCAGGGAGATAACACTAGAT--GTGA-TATGCT-CTCTGCAAC
1 TTCAGAGAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
* * *** * * *
9341671 TTCAGAGAGGTAA-AATATG-TGGTTTTAATCCGCTCCATTGCAAC
1 TTCAGAGAGATAAGACT-TGCT-CACTTAGTCTGCTCCACTGCAAC
* ** * *
9341715 TTCAGAGAGAT-AGAATTATTGACTTTAATCTGCTCCACTGCAAC
1 TTCAGAGAGATAAGACTTGCTCAC-TTAGTCTGCTCCACTGCAAC
* * *
9341759 TTTAGGGAGATAAGATTTGC-CATCTTCAGTCTGC-CTCACTGCAAC
1 TTCAGAGAGATAAGACTTGCTCA-CTT-AGTCTGCTC-CACTGCAAC
9341804 TTCAG-GAGGATAAGA
1 TTCAGAGA-GATAAGA
9341819 TATGAAATTT
Statistics
Matches: 203, Mismatches: 53, Indels: 35
0.70 0.18 0.12
Matches are distributed among these distances:
39 3 0.01
40 20 0.10
41 13 0.06
42 27 0.13
43 7 0.03
44 93 0.46
45 40 0.20
ACGTcount: A:0.30, C:0.21, G:0.20, T:0.30
Consensus pattern (44 bp):
TTCAGAGAGATAAGACTTGCTCACTTAGTCTGCTCCACTGCAAC
Found at i:9341972 original size:132 final size:132
Alignment explanation
Indices: 9341812--9342499 Score: 1101
Period size: 132 Copynumber: 5.2 Consensus size: 132
9341802 ACTTCAGGAG
* * *
9341812 GATAAGATATGAAATTTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCATCAAT
1 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
* * *
9341877 GTACTCCACTATAACCACAAGGATGTAAAATCTGTCATCTTCGATCTGCTCCGCTACTGCTTAGG
66 GTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCTGCTCCGCTACTGCTTAGG
9341942 GA
131 GA
*
9341944 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTAGCTTCAAT
1 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
* * *
9342009 GTACTCCACTGTAACCACAAGGAGGTAAAAT-TCACCATCTTTGATCTACTCCGCTACTGCTTAG
66 GTACTCCACTGTAACCACAAGGAGGTAAAATCT-GCCATCTTCGATCTGCTCCGCTACTGCTTAG
9342073 GGA
130 GGA
* * *
9342076 GATACGATCTGAAATCTTCAATCTATTCCACTATTGTCTAGGGAAGTAGAATTACTGGCTTCAAT
1 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
* *
9342141 GTACTCCACTGTAACCACAGGGAGGTAAAATCTGCCATCTTCGATCTACTCCGCTACTGCTTAGG
66 GTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCTGCTCCGCTACTGCTTAGG
9342206 GA
131 GA
9342208 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
1 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
* * * * *
9342273 GTACTCCATTGTAACCACAGGGGGGTAAAATCCGCCATCTGCGATCTGCTCCGCTACTGCTTAGG
66 GTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCTGCTCCGCTACTGCTTAGG
9342338 GA
131 GA
*
9342340 GATAAGATCTTAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
1 GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
* * * * **
9342405 ATACTCCACTGTAACCAC-AGGAAGGTAAAATCCGCCAACTTCGATTTGCTCCGCTACTTATTAG
66 GTACTCCACTGTAACCACAAGG-AGGTAAAATCTGCCATCTTCGATCTGCTCCGCTACTGCTTAG
9342469 GGA
130 GGA
9342472 GATAAGATCTGAAATCTTCAATCTATTC
1 GATAAGATCTGAAATCTTCAATCTATTC
9342500 GCTGTCGGTG
Statistics
Matches: 517, Mismatches: 36, Indels: 6
0.92 0.06 0.01
Matches are distributed among these distances:
131 3 0.01
132 513 0.99
133 1 0.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.30
Consensus pattern (132 bp):
GATAAGATCTGAAATCTTCAATCTATTCCACTGTTGTCCAGGGAAGTAGAATTACTGGCTTCAAT
GTACTCCACTGTAACCACAAGGAGGTAAAATCTGCCATCTTCGATCTGCTCCGCTACTGCTTAGG
GA
Found at i:9342100 original size:44 final size:44
Alignment explanation
Indices: 9342052--9342239 Score: 113
Period size: 44 Copynumber: 4.3 Consensus size: 44
9342042 ACCATCTTTG
* *
9342052 ATCTACTCCGCTACTGCTTAGGGAGATACGATCTGAAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCA
* * *
9342096 ATCTATTCCACTATTG-TCTAGGGA-AGT-AGAATTACTG---GCTTCA
1 ATCTACTCCACTACTGCT-TAGGGAGA-TAAG-A-T-CTGAAATCTTCA
* ** * * ** *
9342139 ATGTACTCCACTGTAAC--CACAGGGAGGTAAAATCTGCCATCTTCG
1 ATCTACTCCAC--T-ACTGCTTAGGGAGATAAGATCTGAAATCTTCA
*
9342184 ATCTACTCCGCTACTGCTTAGGGAGATAAGATCTGAAATCTTCA
1 ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCA
*
9342228 ATCTATTCCACT
1 ATCTACTCCACT
9342240 GTTGTCCAGG
Statistics
Matches: 103, Mismatches: 25, Indels: 32
0.64 0.16 0.20
Matches are distributed among these distances:
42 5 0.05
43 19 0.18
44 59 0.57
45 16 0.16
46 4 0.04
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (44 bp):
ATCTACTCCACTACTGCTTAGGGAGATAAGATCTGAAATCTTCA
Found at i:9342563 original size:44 final size:44
Alignment explanation
Indices: 9342510--9342652 Score: 112
Period size: 44 Copynumber: 3.3 Consensus size: 44
9342500 GCTGTCGGTG
*
9342510 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACC
* * * * * * ** *
9342554 CAGGGAGGCAAG-GCTGATGTATTCGATCC-GCTTCGCTGTCGGCG
1 CAGGAAGGCAAGATCTGATATTTTC-AACCTGCTCCGCTG-CAACC
* * *
9342598 CAAGAAGGCAAGATCT-ATTTTTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACC
* *
9342641 TAGGGAGGCAAG
1 CAGGAAGGCAAG
9342653 GCTAGTATCT
Statistics
Matches: 71, Mismatches: 24, Indels: 9
0.68 0.23 0.09
Matches are distributed among these distances:
43 30 0.42
44 39 0.55
45 2 0.03
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.23
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACC
Found at i:9342648 original size:87 final size:87
Alignment explanation
Indices: 9342497--9342710 Score: 279
Period size: 87 Copynumber: 2.4 Consensus size: 87
9342487 CTTCAATCTA
*
9342497 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACCCAGGGAGG
1 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACCCAGGGAGG
*
9342562 CAAGGCTGATGTA-TTCGATCCGC
66 CAAGGCT-A-GTACTTCGATCCAC
* * * * *
9342585 TTCGCTGTCGGCGCAAGAAGGCAAGATCT-ATTTTTTTAACCTGCTCCGCTGCAACCTAGGGAGG
1 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACCCAGGGAGG
* *
9342649 CAAGGCTAGTATCTTTGATCTAC
66 CAAGGCTAGTA-CTTCGATCCAC
* * *
9342672 TTCGCTGTCGGTGCAGGAAGGCAAAATTTGCTATTTTCA
1 TTCGCTGTCGGTGCAGGAAGGCAAGATCTGATATTTTCA
9342711 CTGATCTGTT
Statistics
Matches: 107, Mismatches: 16, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
85 3 0.03
86 1 0.01
87 70 0.65
88 33 0.31
ACGTcount: A:0.22, C:0.24, G:0.26, T:0.28
Consensus pattern (87 bp):
TTCGCTGTCGGTGCAGGAAGGCAAGATCTGATATTTTCAACCTGCTCCGCTGCAACCCAGGGAGG
CAAGGCTAGTACTTCGATCCAC
Found at i:9348812 original size:22 final size:21
Alignment explanation
Indices: 9348774--9348814 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
9348764 TATAAAGTAT
**
9348774 ATAAAAAATTAGGAAAGTAAA
1 ATAAAAAATTAAAAAAGTAAA
9348795 ATAAAAAATATAAAAAAGTA
1 ATAAAAAAT-TAAAAAAGTA
9348815 TGTAGGTATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.71, C:0.00, G:0.10, T:0.20
Consensus pattern (21 bp):
ATAAAAAATTAAAAAAGTAAA
Found at i:9350242 original size:137 final size:138
Alignment explanation
Indices: 9350076--9350351 Score: 527
Period size: 137 Copynumber: 2.0 Consensus size: 138
9350066 AAATTGGGTA
9350076 TTACAGTTGTCTTTATTAAATGGAGGATTTATGATGTAATAAGGCCAAAATATAGTTAGTGGGGG
1 TTACAGTTGTCTTTATTAAATGGAGGATTTATGATGTAATAAGGCCAAAATATAGTTAGTGGGGG
*
9350141 GCAAAGTACAAGTATAGCCTTATATATAAATGTATATATATTTATATAAAGGTTAATAAAGTAAG
66 GCAAAGTACAAGTATAGCCTTATATATAAATGGATATATATTTATATAAAGGTTAATAAAGTAAG
9350206 CTAATTAT
131 CTAATTAT
9350214 TTACAGTTGTC-TTATTAAATGGAGGATTTATGATGTAATAAGGCCAAAATATAGTTAGTGGGGG
1 TTACAGTTGTCTTTATTAAATGGAGGATTTATGATGTAATAAGGCCAAAATATAGTTAGTGGGGG
*
9350278 GCAAAGTACAAGTATAGCCTTATATATTAATGGATATATATTTATATAAAGGTTAATAAAGTAAG
66 GCAAAGTACAAGTATAGCCTTATATATAAATGGATATATATTTATATAAAGGTTAATAAAGTAAG
9350343 CTAATTAT
131 CTAATTAT
9350351 T
1 T
9350352 AATGTTAGTG
Statistics
Matches: 136, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
137 125 0.92
138 11 0.08
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.36
Consensus pattern (138 bp):
TTACAGTTGTCTTTATTAAATGGAGGATTTATGATGTAATAAGGCCAAAATATAGTTAGTGGGGG
GCAAAGTACAAGTATAGCCTTATATATAAATGGATATATATTTATATAAAGGTTAATAAAGTAAG
CTAATTAT
Found at i:9352107 original size:2 final size:2
Alignment explanation
Indices: 9352100--9352132 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
9352090 GTTATGTGTT
*
9352100 TA TA TA TA TA TA TA TA TA TG TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9352133 TGAATGAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9355412 original size:13 final size:13
Alignment explanation
Indices: 9355391--9355439 Score: 53
Period size: 13 Copynumber: 3.8 Consensus size: 13
9355381 TAAACTAAAT
*
9355391 TTTTTAAAAGTAC
1 TTTTCAAAAGTAC
* *
9355404 TTCTCAAAAGTAT
1 TTTTCAAAAGTAC
* *
9355417 TTTTCCACAGTAC
1 TTTTCAAAAGTAC
9355430 TTTTCAAAAG
1 TTTTCAAAAG
9355440 CAATGAAGCA
Statistics
Matches: 27, Mismatches: 9, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (13 bp):
TTTTCAAAAGTAC
Found at i:9355418 original size:26 final size:26
Alignment explanation
Indices: 9355389--9355439 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
9355379 TTTAAACTAA
*
9355389 ATTTTTTAAAAGTACTTCTCAAAAGT
1 ATTTTTCAAAAGTACTTCTCAAAAGT
* * *
9355415 ATTTTTCCACAGTACTTTTCAAAAG
1 ATTTTTCAAAAGTACTTCTCAAAAG
9355440 CAATGAAGCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.35, C:0.16, G:0.08, T:0.41
Consensus pattern (26 bp):
ATTTTTCAAAAGTACTTCTCAAAAGT
Found at i:9361049 original size:15 final size:15
Alignment explanation
Indices: 9361025--9361056 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
9361015 TATGCATGCA
*
9361025 AAATATAAAAGATAT
1 AAATACAAAAGATAT
9361040 AAATACAAAAGATAT
1 AAATACAAAAGATAT
9361055 AA
1 AA
9361057 TAGTGAAATG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.03, G:0.06, T:0.22
Consensus pattern (15 bp):
AAATACAAAAGATAT
Found at i:9365035 original size:19 final size:19
Alignment explanation
Indices: 9365008--9365052 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 19
9364998 TTGCACCAAA
9365008 AAATCTTTAAATTATG-TTTT
1 AAAT-TTTAAA-TATGTTTTT
*
9365028 AAATTTTAAATCTGTTTTT
1 AAATTTTAAATATGTTTTT
9365047 AAATTT
1 AAATTT
9365053 GATACCCTTC
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
18 3 0.13
19 16 0.70
20 4 0.17
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (19 bp):
AAATTTTAAATATGTTTTT
Found at i:9373134 original size:18 final size:18
Alignment explanation
Indices: 9373108--9373146 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
9373098 AATCAAAATT
9373108 TAAAAATCAAAATTAAAC
1 TAAAAATCAAAATTAAAC
* **
9373126 TAAAGATCAAGTTTAAAC
1 TAAAAATCAAAATTAAAC
9373144 TAA
1 TAA
9373147 TTATAGAAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.59, C:0.10, G:0.05, T:0.26
Consensus pattern (18 bp):
TAAAAATCAAAATTAAAC
Found at i:9373222 original size:37 final size:37
Alignment explanation
Indices: 9373181--9373258 Score: 95
Period size: 37 Copynumber: 2.1 Consensus size: 37
9373171 AAATAATTTG
* ** * *
9373181 ATCTTTATCCAACCATTTTTTAATTTTCAACCC-TTCA
1 ATCTTAATCCAACCAACTTTAAATCTTC-ACCCTTTCA
9373218 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
1 ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
9373255 ATCT
1 ATCT
9373259 AGCCATCTTC
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
36 4 0.11
37 31 0.89
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.41
Consensus pattern (37 bp):
ATCTTAATCCAACCAACTTTAAATCTTCACCCTTTCA
Found at i:9374987 original size:21 final size:21
Alignment explanation
Indices: 9374940--9375001 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
9374930 ACACAGGCTG
*
9374940 TTCACACGGGCGTGTGTC-CCC
1 TTCACACGGGCGTGTG-CGACC
* *
9374961 TCCACACGGGTGTGTGCGACC
1 TTCACACGGGCGTGTGCGACC
*
9374982 TTCACATGGGCGTGTG-GACC
1 TTCACACGGGCGTGTGCGACC
9375002 CCCACACAGC
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
20 5 0.15
21 29 0.85
ACGTcount: A:0.13, C:0.32, G:0.32, T:0.23
Consensus pattern (21 bp):
TTCACACGGGCGTGTGCGACC
Found at i:9375024 original size:16 final size:16
Alignment explanation
Indices: 9375003--9375035 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
9374993 GTGTGGACCC
9375003 CCACACAGCCTGGGCA
1 CCACACAGCCTGGGCA
9375019 CCACACAGCCTGGGCA
1 CCACACAGCCTGGGCA
9375035 C
1 C
9375036 TTCCATACGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.45, G:0.24, T:0.06
Consensus pattern (16 bp):
CCACACAGCCTGGGCA
Found at i:9376278 original size:34 final size:34
Alignment explanation
Indices: 9376232--9376301 Score: 124
Period size: 34 Copynumber: 2.1 Consensus size: 34
9376222 TCCTAGCCCG
9376232 GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
9376266 GGTTTT-GAGGCGTTACAAGATATTTAAAGATTTT
1 GGTTTTAG-GGCGTTACAAGATATTTAAAGATTTT
9376300 GG
1 GG
9376302 CATATTCCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
33 1 0.03
34 34 0.97
ACGTcount: A:0.29, C:0.06, G:0.26, T:0.40
Consensus pattern (34 bp):
GGTTTTAGGGCGTTACAAGATATTTAAAGATTTT
Found at i:9378435 original size:27 final size:27
Alignment explanation
Indices: 9378404--9378718 Score: 264
Period size: 27 Copynumber: 11.7 Consensus size: 27
9378394 AGAGGTCAGT
* *
9378404 AAATGACTGAATTACCCCCACAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * * *
9378431 AAATGACCGAATTATCCCCACAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * * *
9378458 AAATGAC-CAAATTACCTCCACAAGGTA
1 AAATGACTGAAA-TACCCCCATAGGGTA
* ** *
9378485 AAATGA-TCGAAATAACCTTACAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
* * *
9378512 AAATGA-TCAAAATACCCCTACAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
*
9378539 AAATGA-TCGGAATACCCCCATAGGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
* * *
9378566 AAATGGCCGAAATACCCCCATAAGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * *
9378593 AAATGACTGGAATACCCCTATAAGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
* * *
9378620 AAATGA-TCGGAATACCCCTATAAGGTA
1 AAATGACT-GAAATACCCCCATAGGGTA
*
9378647 AAATGACTGAAGTACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
**
9378674 AAATGACCAAAATACCCCCATAGGGTA
1 AAATGACTGAAATACCCCCATAGGGTA
9378701 AAATGACT-AATATACCCC
1 AAATGACTGAA-ATACCCC
9378719 TAGGAGATGA
Statistics
Matches: 245, Mismatches: 36, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
26 5 0.02
27 236 0.96
28 4 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (27 bp):
AAATGACTGAAATACCCCCATAGGGTA
Found at i:9378708 original size:54 final size:53
Alignment explanation
Indices: 9378416--9378718 Score: 293
Period size: 54 Copynumber: 5.6 Consensus size: 53
9378406 ATGACTGAAT
* * * * *
9378416 TACCCCCACAGGGTAAAATGACCGAATTATCCCCACAGGGTAAAATGACCAAAT
1 TACCCCCACAAGGTAAAATGACTGAA-TACCCCCATAGGGTAAAATGACCAAAA
* * ** * *
9378470 TACCTCCACAAGGTAAAATGA-TCGAAATAACCTTACAGGGTAAAATGATCAAAA
1 TACCCCCACAAGGTAAAATGACT-G-AATACCCCCATAGGGTAAAATGACCAAAA
* * * * *
9378524 TACCCCTACAGGGTAAAATGATCGGAATACCCCCATAGGGTAAAATGGCCGAAA
1 TACCCCCACAAGGTAAAATGA-CTGAATACCCCCATAGGGTAAAATGACCAAAA
* * * * **
9378578 TACCCCCATAAGGTAAAATGACTGGAATACCCCTATAAGGTAAAATGATCGGAA
1 TACCCCCACAAGGTAAAATGACT-GAATACCCCCATAGGGTAAAATGACCAAAA
* *
9378632 TACCCCTATAAGGTAAAATGACTGAAGTACCCCCATAGGGTAAAATGACCAAAA
1 TACCCCCACAAGGTAAAATGACTGAA-TACCCCCATAGGGTAAAATGACCAAAA
* * *
9378686 TACCCCCATAGGGTAAAATGACTAATATACCCC
1 TACCCCCACAAGGTAAAATGACTGA-ATACCCC
9378719 TAGGAGATGA
Statistics
Matches: 205, Mismatches: 37, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
53 4 0.02
54 197 0.96
55 4 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (53 bp):
TACCCCCACAAGGTAAAATGACTGAATACCCCCATAGGGTAAAATGACCAAAA
Found at i:9378716 original size:81 final size:81
Alignment explanation
Indices: 9378404--9378720 Score: 309
Period size: 81 Copynumber: 3.9 Consensus size: 81
9378394 AGAGGTCAGT
* * * * *
9378404 AAATGACTGAATTACCCCCACAGGGTAAAATGACCGAATTATCCCCACAGGGTAAAATGA-CCAA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
*
9378468 ATTACCTCC-ACAAGGTA
66 A-TACC-CCTATAAGGTA
* ** * * *
9378485 AAATGA-TCGAAATAACCTTACAGGGTAAAATGATCAAAATACCCCTACAGGGTAAAATGATCGG
1 AAATGACT-GAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGA
* *
9378549 AATACCCCCATAGGGTA
65 AATACCCCTATAAGGTA
* * * * *** * * * *
9378566 AAATGGCCGAAATACCCCCATAAGGTAAAATGACTGGAATACCCCTATAAGGTAAAATGATCGGA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
9378631 ATACCCCTATAAGGTA
66 ATACCCCTATAAGGTA
* * * *
9378647 AAATGACTGAAGTACCCCCATAGGGTAAAATGACCAAAATACCCCCATAGGGTAAAATGA-CTAA
1 AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
9378711 TATACCCCTA
66 -ATACCCCTA
9378721 GGAGATGAAA
Statistics
Matches: 192, Mismatches: 39, Indels: 10
0.80 0.16 0.04
Matches are distributed among these distances:
80 5 0.03
81 184 0.96
82 3 0.02
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (81 bp):
AAATGACTGAAATACCCCCACAGGGTAAAATGACCAAAATACCCCCACAGGGTAAAATGATCGAA
ATACCCCTATAAGGTA
Found at i:9378899 original size:26 final size:26
Alignment explanation
Indices: 9378870--9378976 Score: 153
Period size: 26 Copynumber: 4.1 Consensus size: 26
9378860 TGGAGGAAGT
*
9378870 ATACTGTTACTGGTAGTTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
9378896 ATACTGTTACTGGCAGTTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
* *
9378922 ATACTGTTATTGAG-GGTTTTGCTGCG
1 ATACTGTTACTG-GCAGTTTTGCTGCG
* *
9378948 ATACTATTACTGGCAGCTTTGCTGCG
1 ATACTGTTACTGGCAGTTTTGCTGCG
9378974 ATA
1 ATA
9378977 TTGGTGTGTT
Statistics
Matches: 72, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
25 1 0.01
26 70 0.97
27 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.26, T:0.39
Consensus pattern (26 bp):
ATACTGTTACTGGCAGTTTTGCTGCG
Found at i:9382413 original size:64 final size:64
Alignment explanation
Indices: 9382243--9382415 Score: 238
Period size: 64 Copynumber: 2.7 Consensus size: 64
9382233 AGACGCCCAT
* * * * * *
9382243 AAAGAGCTGTGGTATGTCTACAATACATGTAGGATCAATACCAATCATATAACAGGACACTCAC
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
* ** *
9382307 AAAGAGTTGCTGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGATGCTTAC
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
* *
9382371 AAAGAGTTGCGGTATGTCCGCAACACATGCATGATCAATACCGAT
1 AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGAT
9382416 GGGGATGCTC
Statistics
Matches: 96, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
64 96 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (64 bp):
AAAGAGTTGCGGTATGTCCACAACACATGCAGGATCAATACCGATCATATAACAGGACACTCAC
Found at i:9386397 original size:10 final size:10
Alignment explanation
Indices: 9386382--9386407 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
9386372 GTACAAATTG
9386382 TGATGTGAAT
1 TGATGTGAAT
9386392 TGATGTGAAT
1 TGATGTGAAT
9386402 TGATGT
1 TGATGT
9386408 TTATGAATAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.27, C:0.00, G:0.31, T:0.42
Consensus pattern (10 bp):
TGATGTGAAT
Found at i:9387782 original size:31 final size:31
Alignment explanation
Indices: 9387747--9387805 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
9387737 AAGCATGTTT
*
9387747 TTAAGTTATTTATAATGTTGACTAAGGTATG
1 TTAAGTTATTTAAAATGTTGACTAAGGTATG
* *
9387778 TTAAGTTGTTTAAAATGTTGTCTAAGGT
1 TTAAGTTATTTAAAATGTTGACTAAGGT
9387806 GTTTAAGACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.31, C:0.03, G:0.20, T:0.46
Consensus pattern (31 bp):
TTAAGTTATTTAAAATGTTGACTAAGGTATG
Found at i:9388944 original size:20 final size:20
Alignment explanation
Indices: 9388919--9388958 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9388909 CGTAAAATGA
*
9388919 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
9388939 TTTCTGTAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
9388959 GGAAAATATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.28, C:0.10, G:0.12, T:0.50
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:9388948 original size:34 final size:35
Alignment explanation
Indices: 9388904--9388970 Score: 109
Period size: 34 Copynumber: 1.9 Consensus size: 35
9388894 CAGTAAAATA
*
9388904 TTTTCCGTAAAATGATTT-CTGGAAAATGTTTTAC
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
*
9388938 TTTTCTGTAAAATGATTTACTGGAAAATATTTT
1 TTTTCCGTAAAATGATTTACTGGAAAATATTTT
9388971 CTGGTGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 17 0.57
35 13 0.43
ACGTcount: A:0.31, C:0.09, G:0.13, T:0.46
Consensus pattern (35 bp):
TTTTCCGTAAAATGATTTACTGGAAAATATTTTAC
Found at i:9388974 original size:14 final size:15
Alignment explanation
Indices: 9388898--9388974 Score: 52
Period size: 14 Copynumber: 5.0 Consensus size: 15
9388888 GATTGCCAGT
* *
9388898 AAAAT-ATTTTCCGT
1 AAAATGATTTTCTGG
9388912 AAAATGA-TTTCTGG
1 AAAATGATTTTCTGG
*
9388926 AAAATGTTTTACTTTTCTGT
1 AAAATG----A-TTTTCTGG
*
9388946 AAAATGATTTACTGG
1 AAAATGATTTTCTGG
9388961 AAAAT-ATTTTCTGG
1 AAAATGATTTTCTGG
9388975 TGTTTGATTG
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
14 24 0.48
15 12 0.24
16 1 0.02
18 1 0.02
20 12 0.24
ACGTcount: A:0.34, C:0.09, G:0.14, T:0.43
Consensus pattern (15 bp):
AAAATGATTTTCTGG
Found at i:9394568 original size:5 final size:6
Alignment explanation
Indices: 9394551--9394575 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
9394541 AGCCATTAAA
9394551 TCTTTT TCTTTT TCTTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT T
9394576 TTCTAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (6 bp):
TCTTTT
Found at i:9394769 original size:9 final size:9
Alignment explanation
Indices: 9394740--9394769 Score: 51
Period size: 9 Copynumber: 3.3 Consensus size: 9
9394730 GAATTTTTAC
9394740 AATTCGAAT
1 AATTCGAAT
*
9394749 AACTCGAAT
1 AATTCGAAT
9394758 AATTCGAAT
1 AATTCGAAT
9394767 AAT
1 AAT
9394770 ATATTAGTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.47, C:0.13, G:0.10, T:0.30
Consensus pattern (9 bp):
AATTCGAAT
Found at i:9394898 original size:20 final size:19
Alignment explanation
Indices: 9394854--9394919 Score: 71
Period size: 19 Copynumber: 3.4 Consensus size: 19
9394844 TACAAAACAA
9394854 TCAAAATAATTTTCAAAAAT
1 TCAAAATAATTTT-AAAAAT
** *
9394874 AAAAAATAATTTTTAAAAT
1 TCAAAATAATTTTAAAAAT
9394893 TCAAAAT-ATTTATAAAAAT
1 TCAAAATAATTT-TAAAAAT
9394912 TCTAAAAT
1 TC-AAAAT
9394920 TTGTATTTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
18 4 0.11
19 18 0.47
20 16 0.42
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.36
Consensus pattern (19 bp):
TCAAAATAATTTTAAAAAT
Found at i:9395273 original size:21 final size:21
Alignment explanation
Indices: 9395247--9395286 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
9395237 ACTTTATCTA
*
9395247 AAGTTAAAAATCAAAACTATC
1 AAGTTAAAAAGCAAAACTATC
*
9395268 AAGTTAAAAGGCAAAACTA
1 AAGTTAAAAAGCAAAACTA
9395287 CGTTGTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.57, C:0.12, G:0.10, T:0.20
Consensus pattern (21 bp):
AAGTTAAAAAGCAAAACTATC
Found at i:9397084 original size:9 final size:9
Alignment explanation
Indices: 9397067--9397103 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
9397057 TATAATTTGA
9397067 TATTCGAAT
1 TATTCGAAT
*
9397076 TATTTGAAT
1 TATTCGAAT
*
9397085 TATTCGAGT
1 TATTCGAAT
9397094 TATTCGAAT
1 TATTCGAAT
9397103 T
1 T
9397104 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:9402756 original size:22 final size:23
Alignment explanation
Indices: 9402724--9402799 Score: 88
Period size: 22 Copynumber: 3.4 Consensus size: 23
9402714 AACTAATCCT
*
9402724 CTCTCAAATTTGCTCTCAATTTC
1 CTCTCAAATTTCCTCTCAATTTC
*
9402747 CTCT-AAATTTCCTCTCAATTTG
1 CTCTCAAATTTCCTCTCAATTTC
9402769 CTCTCAAA-TTCCT-TCCAAATTT-
1 CTCTCAAATTTCCTCT-C-AATTTC
9402791 CTCTCAAAT
1 CTCTCAAAT
9402800 CCATATTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
21 1 0.02
22 34 0.72
23 12 0.26
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.42
Consensus pattern (23 bp):
CTCTCAAATTTCCTCTCAATTTC
Found at i:9402769 original size:33 final size:33
Alignment explanation
Indices: 9402723--9402797 Score: 107
Period size: 33 Copynumber: 2.2 Consensus size: 33
9402713 AAACTAATCC
* *
9402723 TCTCTCAAATTTGCTCTCAATTTCC-TCTAAATT
1 TCTCTC-AATTTGCTCTCAAATTCCTTCCAAATT
9402756 TCCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
1 T-CTCTCAATTTGCTCTCAAATTCCTTCCAAATT
9402790 TCTCTCAA
1 TCTCTCAA
9402798 ATCCATATTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
33 25 0.66
34 13 0.34
ACGTcount: A:0.24, C:0.31, G:0.03, T:0.43
Consensus pattern (33 bp):
TCTCTCAATTTGCTCTCAAATTCCTTCCAAATT
Found at i:9402798 original size:11 final size:11
Alignment explanation
Indices: 9402723--9402799 Score: 72
Period size: 11 Copynumber: 6.9 Consensus size: 11
9402713 AAACTAATCC
9402723 TCTCTCAAATT
1 TCTCTCAAATT
9402734 TGCTCTC-AATT
1 T-CTCTCAAATT
9402745 TC-CTCTAAATT
1 TCTCTC-AAATT
9402756 TCCTCTC-AATT
1 T-CTCTCAAATT
9402767 TGCTCTCAAATT
1 T-CTCTCAAATT
*
9402779 CCT-TCCAAATT
1 TCTCT-CAAATT
9402790 TCTCTCAAAT
1 TCTCTCAAAT
9402800 CCATATTTAA
Statistics
Matches: 55, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
9 3 0.05
10 2 0.04
11 36 0.65
12 11 0.20
13 3 0.05
ACGTcount: A:0.25, C:0.30, G:0.03, T:0.43
Consensus pattern (11 bp):
TCTCTCAAATT
Found at i:9402816 original size:51 final size:51
Alignment explanation
Indices: 9402759--9402858 Score: 130
Period size: 51 Copynumber: 2.0 Consensus size: 51
9402749 CTAAATTTCC
* *
9402759 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTACTCTCAAATTCCTCT-CAAATTTCTATCAAATCCATATTTAA
* * * *
9402810 TCTCAATTTACTCTCAAGTTCCTCTTAAATTTCTATTAAATCCCTATTT
1 TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTATCAAATCCATATTT
9402859 TTAAATAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
51 41 0.98
52 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.02, T:0.44
Consensus pattern (51 bp):
TCTCAATTTACTCTCAAATTCCTCTCAAATTTCTATCAAATCCATATTTAA
Found at i:9404569 original size:18 final size:18
Alignment explanation
Indices: 9404546--9404585 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
9404536 CAGGTGCGTT
*
9404546 TCCTAACCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
9404564 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
9404582 TCCT
1 TCCT
9404586 TTTCCGAGTA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.20, C:0.30, G:0.05, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:9407140 original size:127 final size:125
Alignment explanation
Indices: 9406710--9407245 Score: 754
Period size: 126 Copynumber: 4.3 Consensus size: 125
9406700 CCCAAACATG
* * *
9406710 CTACTATAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTTTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* * ** * * *
9406775 TAGAAGCG-ATTTTATTCTATTTGCTCAAAAACGTCAAGTCGAAATTATTTTTCCAAGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
* * *
9406834 CTACTGTAGCAAAAGCGCGTCCGCGAGGACGCGATTTCACAAATTTTTCTCA-AATAGCATCCTG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTG
* * * * * *
9406898 CTTGCAGCGTTGTTTTATACTATCTGCTCAGAAATGTCAACTCAAAATTATTTTTTCAGGAC
65 CTTGAAGCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
*
9406960 CTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
* *
9407025 TTGAAACAGTTTTTTAAACTATTTGCTCAGAAACATCAACTCGAAATTATTTCTTCCAGGAC
66 TTGAAGC-GTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGAC
* * * * *
9407087 CAACTGTAGCAAAAGCGCGTCCATGAGGGCACAATTTCACAAATTCTTCTCATAAAGTATCCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
9407152 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
66 TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
*
9407212 CTACTGTAGCAAAAGCGCGTACAC-ATGGGCGCGA
1 CTACTGTAGCAAAAGCGCGTCCACGA-GGGCGCGA
9407246 CTTTAAAAAT
Statistics
Matches: 363, Mismatches: 42, Indels: 13
0.87 0.10 0.03
Matches are distributed among these distances:
123 2 0.01
124 63 0.17
125 36 0.10
126 184 0.51
127 78 0.21
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (125 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGC
TTGAAGCGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGAC
Found at i:9408430 original size:25 final size:24
Alignment explanation
Indices: 9408393--9408447 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
9408383 ATATATAAAT
* * **
9408393 AGGTAAGGGGTTACAAGAAGATGAA
1 AGGTGAGGAGTTA-AAGAAGACAAA
*
9408418 AGGTGAGGAGTTAAGGAAGACAAA
1 AGGTGAGGAGTTAAAGAAGACAAA
9408442 AGGTGA
1 AGGTGA
9408448 AAGGTTGATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
24 14 0.56
25 11 0.44
ACGTcount: A:0.44, C:0.04, G:0.38, T:0.15
Consensus pattern (24 bp):
AGGTGAGGAGTTAAAGAAGACAAA
Found at i:9409625 original size:15 final size:15
Alignment explanation
Indices: 9409601--9409631 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9409591 ATATATTATG
9409601 ACTTGCTATTATGCT
1 ACTTGCTATTATGCT
*
9409616 ACTTGTTATTATGCT
1 ACTTGCTATTATGCT
9409631 A
1 A
9409632 ACATGTACTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.16, G:0.13, T:0.48
Consensus pattern (15 bp):
ACTTGCTATTATGCT
Done.