Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 3 of 163
Found at i:653703 original size:56 final size:56
Alignment explanation
Indices: 653638--653750 Score: 217
Period size: 56 Copynumber: 2.0 Consensus size: 56
653628 GTCCTTAGTC
*
653638 TAATCGAAAATGAGGAAATCACTTGAAAGACTAATATGTCATCTATCAAGTCCAAT
1 TAATCGAAAATGAGGAAATCAATTGAAAGACTAATATGTCATCTATCAAGTCCAAT
653694 TAATCGAAAATGAGGAAATCAATTGAAAGACTAATATGTCATCTATCAAGTCCAAT
1 TAATCGAAAATGAGGAAATCAATTGAAAGACTAATATGTCATCTATCAAGTCCAAT
653750 T
1 T
653751 GGAGAGATGT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 56 1.00
ACGTcount: A:0.43, C:0.15, G:0.14, T:0.27
Consensus pattern (56 bp):
TAATCGAAAATGAGGAAATCAATTGAAAGACTAATATGTCATCTATCAAGTCCAAT
Found at i:656694 original size:10 final size:11
Alignment explanation
Indices: 656661--656694 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
656651 CGACCCGCCC
656661 ATATTAATTTTT
1 ATATTAA-TTTT
656673 ATATTAATTTT
1 ATATTAATTTT
656684 ATATT-ATTTT
1 ATATTAATTTT
656694 A
1 A
656695 AAATATATAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 6 0.27
11 9 0.41
12 7 0.32
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (11 bp):
ATATTAATTTT
Found at i:656843 original size:30 final size:30
Alignment explanation
Indices: 656807--656869 Score: 126
Period size: 30 Copynumber: 2.1 Consensus size: 30
656797 CTTAAACAAG
656807 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTTTAAAATAATAACAAAATTAA
656837 CAAATGTCTTTAAAATAATAACAAAATTAA
1 CAAATGTCTTTAAAATAATAACAAAATTAA
656867 CAA
1 CAA
656870 TAAAATAAGT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.11, G:0.03, T:0.29
Consensus pattern (30 bp):
CAAATGTCTTTAAAATAATAACAAAATTAA
Found at i:663732 original size:26 final size:24
Alignment explanation
Indices: 663684--663729 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
663674 AATAAATTAT
*
663684 ATATATAAATAGATTTAAAAGAAG
1 ATATATAAACAGATTTAAAAGAAG
*
663708 ATATATAAACATATTTAAAAGA
1 ATATATAAACAGATTTAAAAGA
663730 GAATTTAAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.59, C:0.02, G:0.09, T:0.30
Consensus pattern (24 bp):
ATATATAAACAGATTTAAAAGAAG
Found at i:672887 original size:54 final size:54
Alignment explanation
Indices: 672792--672894 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
672782 ACTCTCTGAA
* *
672792 ATATTTTCAAACCATGGGATGGATGCCTCTAATCCATCAGGAACCTCAATGGTC
1 ATATTTTCAAACCATGGGATGGATGCATCTAATCCAGCAGGAACCTCAATGGTC
* ** *
672846 ATATTTTCAAACCATGGGATGGATGTATCTTCTCCAGCAGGAAGCTCAA
1 ATATTTTCAAACCATGGGATGGATGCATCTAATCCAGCAGGAACCTCAA
672895 CACCATTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28
Consensus pattern (54 bp):
ATATTTTCAAACCATGGGATGGATGCATCTAATCCAGCAGGAACCTCAATGGTC
Found at i:677374 original size:52 final size:52
Alignment explanation
Indices: 677317--677423 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
677307 TATAATGTTG
*
677317 CATTTTCAATTGGTATCAAAGCCATACACATAAAGCATTTTATGAGATCTTA
1 CATTTTCAATTGGTATCAAAGCCATACACATAAAGCATTTTATGAGATCTCA
*
677369 CATTTTCAATTGGTATCAAAGCCATACACATAAAGTATTTTATGAGATCTCA
1 CATTTTCAATTGGTATCAAAGCCATACACATAAAGCATTTTATGAGATCTCA
677421 CAT
1 CAT
677424 CTGATAGCCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.36, C:0.18, G:0.11, T:0.35
Consensus pattern (52 bp):
CATTTTCAATTGGTATCAAAGCCATACACATAAAGCATTTTATGAGATCTCA
Found at i:678257 original size:108 final size:108
Alignment explanation
Indices: 678068--678283 Score: 405
Period size: 108 Copynumber: 2.0 Consensus size: 108
678058 GGACTGGACC
*
678068 CAATAGTAGAATTTATATTGGATTTGTTTATGGATTTATTCACTTGTAGCGCTCATGGTGTGACT
1 CAATAGTAGAATTTATATTGGATTTGTTTATGGATTTATTCACTTGTAACGCTCATGGTGTGACT
678133 TACCTCGATGCTGAGTAAGTAACTGACCATGTGTACCTAATAG
66 TACCTCGATGCTGAGTAAGTAACTGACCATGTGTACCTAATAG
*
678176 CAATAGTAGAATTTATATTGGGTTTGTTTATGGATTTATTCACTTGTAACGCTCATGGTGTGACT
1 CAATAGTAGAATTTATATTGGATTTGTTTATGGATTTATTCACTTGTAACGCTCATGGTGTGACT
*
678241 TACCTCGATTCTGAGTAAGTAACTGACCATGTGTACCTAATAG
66 TACCTCGATGCTGAGTAAGTAACTGACCATGTGTACCTAATAG
678284 GGGTGAGCAA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
108 105 1.00
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.38
Consensus pattern (108 bp):
CAATAGTAGAATTTATATTGGATTTGTTTATGGATTTATTCACTTGTAACGCTCATGGTGTGACT
TACCTCGATGCTGAGTAAGTAACTGACCATGTGTACCTAATAG
Found at i:679625 original size:19 final size:19
Alignment explanation
Indices: 679600--679644 Score: 63
Period size: 20 Copynumber: 2.3 Consensus size: 19
679590 AGTTGAGAAT
*
679600 TTTTTTATTATTTTAATTAA
1 TTTTTAATTA-TTTAATTAA
679620 TTTTTAATTATTTAATTAA
1 TTTTTAATTATTTAATTAA
679639 TATTTT
1 T-TTTT
679645 GAGAATAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 10 0.43
20 13 0.57
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTTTTAATTATTTAATTAA
Found at i:680482 original size:20 final size:21
Alignment explanation
Indices: 680456--680515 Score: 65
Period size: 20 Copynumber: 3.0 Consensus size: 21
680446 ATATTAAAAA
680456 TATATTTTTATAATTAAATTT
1 TATATTTTTATAATTAAATTT
*
680477 TA-ATTTTTTTAA--AAATATT
1 TATATTTTTATAATTAAAT-TT
680496 TATATTATTTA-AATTAAATT
1 TATATT-TTTATAATTAAATT
680516 CGGATCAACC
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
18 4 0.12
19 4 0.12
20 14 0.44
21 6 0.19
22 4 0.12
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (21 bp):
TATATTTTTATAATTAAATTT
Found at i:688403 original size:27 final size:27
Alignment explanation
Indices: 688372--688474 Score: 145
Period size: 27 Copynumber: 3.8 Consensus size: 27
688362 TAGTATTGGC
*
688372 GCCTACCCGGGAGGCGCCAATGGTGGT
1 GCCTACCCGGGAGGCGCCAATGATGGT
*
688399 GCCTACTCGGGAGGCGCCAATGATGGT
1 GCCTACCCGGGAGGCGCCAATGATGGT
*
688426 GCCTACCTGGGAGGCGCCAATGATGGT
1 GCCTACCCGGGAGGCGCCAATGATGGT
* *
688453 GCC-ATTCCGAGAGGCGCCAATG
1 GCCTA-CCCGGGAGGCGCCAATG
688475 CTGTTATTTT
Statistics
Matches: 68, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
26 1 0.01
27 67 0.99
ACGTcount: A:0.18, C:0.28, G:0.37, T:0.17
Consensus pattern (27 bp):
GCCTACCCGGGAGGCGCCAATGATGGT
Found at i:688580 original size:22 final size:22
Alignment explanation
Indices: 688527--688580 Score: 58
Period size: 22 Copynumber: 2.4 Consensus size: 22
688517 TTTACTTCAG
*
688527 AAAGAAATAATAAGGAAGGAAGCA
1 AAAGAAA-AAGAAGGAAGGAA-CA
688551 AAAG-AAAAGAAGGAAGGAA-A
1 AAAGAAAAAGAAGGAAGGAACA
688571 AGAAGAAAAA
1 A-AAGAAAAA
688581 AATTAGGTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 2 0.07
21 3 0.11
22 16 0.59
23 2 0.07
24 4 0.15
ACGTcount: A:0.69, C:0.02, G:0.26, T:0.04
Consensus pattern (22 bp):
AAAGAAAAAGAAGGAAGGAACA
Found at i:691606 original size:5 final size:5
Alignment explanation
Indices: 691596--691620 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
691586 NNNNNNNNNC
691596 CCCGA CCCGA CCCGA CCCGA CCCGA
1 CCCGA CCCGA CCCGA CCCGA CCCGA
691621 TCGTATTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.20, T:0.00
Consensus pattern (5 bp):
CCCGA
Found at i:691805 original size:35 final size:35
Alignment explanation
Indices: 691766--691836 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
691756 AAAAAAATTT
691766 TCTGACATACTATTTCAGTAATTTTTTTTCTATCC
1 TCTGACATACTATTTCAGTAATTTTTTTTCTATCC
691801 TCTGACATACTATTTCAGTAATTTTTTTTCTATCC
1 TCTGACATACTATTTCAGTAATTTTTTTTCTATCC
691836 T
1 T
691837 AATTAGGTAA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.23, C:0.20, G:0.06, T:0.52
Consensus pattern (35 bp):
TCTGACATACTATTTCAGTAATTTTTTTTCTATCC
Found at i:693656 original size:57 final size:56
Alignment explanation
Indices: 693540--693657 Score: 128
Period size: 57 Copynumber: 2.1 Consensus size: 56
693530 TGAAAACACC
* * **
693540 AAAAAATTTAATATAGTTGGGTGATTATTTTGTAACTTTTCATAATTAAATGACCA
1 AAAAAATTTAATATAGTTGGATGACTATTTTGTAACTTTTCATAATTAAATGAAAA
* * * * ***
693596 AAAAAATTTACTAATAGTTTGATGACTATTTTGTAATTTTTTATAATTGGGTGAAAA
1 AAAAAATTTAAT-ATAGTTGGATGACTATTTTGTAACTTTTCATAATTAAATGAAAA
693653 AAAAA
1 AAAAA
693658 TCATAATTAG
Statistics
Matches: 50, Mismatches: 11, Indels: 1
0.81 0.18 0.02
Matches are distributed among these distances:
56 11 0.22
57 39 0.78
ACGTcount: A:0.42, C:0.05, G:0.13, T:0.41
Consensus pattern (56 bp):
AAAAAATTTAATATAGTTGGATGACTATTTTGTAACTTTTCATAATTAAATGAAAA
Found at i:716727 original size:97 final size:97
Alignment explanation
Indices: 716573--716768 Score: 383
Period size: 97 Copynumber: 2.0 Consensus size: 97
716563 TATTAAATAA
716573 AAATGAGGTTGATTTAAAACATGGATCAGGCTTAAGTCTTGAATGTTTAAATTTAAATATGAATC
1 AAATGAGGTTGATTTAAAACATGGATCAGGCTTAAGTCTTGAATGTTTAAATTTAAATATGAATC
*
716638 CGATCTTTTTTTATATTTTTAATATATTATAT
66 CGATCTTTTTTTATATATTTAATATATTATAT
716670 AAATGAGGTTGATTTAAAACATGGATCAGGCTTAAGTCTTGAATGTTTAAATTTAAATATGAATC
1 AAATGAGGTTGATTTAAAACATGGATCAGGCTTAAGTCTTGAATGTTTAAATTTAAATATGAATC
716735 CGATCTTTTTTTATATATTTAATATATTATAT
66 CGATCTTTTTTTATATATTTAATATATTATAT
716767 AA
1 AA
716769 TATTACTTTT
Statistics
Matches: 98, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
97 98 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.43
Consensus pattern (97 bp):
AAATGAGGTTGATTTAAAACATGGATCAGGCTTAAGTCTTGAATGTTTAAATTTAAATATGAATC
CGATCTTTTTTTATATATTTAATATATTATAT
Found at i:717511 original size:17 final size:17
Alignment explanation
Indices: 717489--717522 Score: 52
Period size: 17 Copynumber: 2.0 Consensus size: 17
717479 TCGAGACTTA
717489 TATATTATTAT-ATAATT
1 TATATTA-TATGATAATT
717506 TATATTATATGATAATT
1 TATATTATATGATAATT
717523 AAAAAGTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 3 0.19
17 13 0.81
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (17 bp):
TATATTATATGATAATT
Found at i:722308 original size:45 final size:46
Alignment explanation
Indices: 722252--722434 Score: 307
Period size: 46 Copynumber: 4.0 Consensus size: 46
722242 TACTTGTCCC
*
722252 TGATCAGATAAGTGTAGCT-AGGCTACCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
* *
722297 TGATCAGATAAGTGTAGCT-AGGCTCCCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
*
722342 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
1 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
*
722388 TGATCAGATAAGTGTAGCTAAAGCTATCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
722434 T
1 T
722435 TTCATTGATC
Statistics
Matches: 131, Mismatches: 6, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
45 63 0.48
46 68 0.52
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (46 bp):
TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTGTCACT
Found at i:722406 original size:91 final size:91
Alignment explanation
Indices: 722252--722434 Score: 305
Period size: 91 Copynumber: 2.0 Consensus size: 91
722242 TACTTGTCCC
* *
722252 TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACTTGATCAGATAAGTGTAGCT-
1 TGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTA
* *
722316 AGGCTCCCACTTATCACTTTGTCACT
66 AAGCTACCACTTATCACTTTGTCACT
722342 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCT
1 TGATCAGATAAGTGTAGCT-AAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCT
*
722407 AAAGCTATCACTTATCACTTTGTCACT
65 AAAGCTACCACTTATCACTTTGTCACT
722434 T
1 T
722435 TTCATTGATC
Statistics
Matches: 86, Mismatches: 5, Indels: 2
0.92 0.05 0.02
Matches are distributed among these distances:
90 19 0.22
91 43 0.50
92 24 0.28
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (91 bp):
TGATCAGATAAGTGTAGCTAAGCTACCACTTATCACTTTATCACTTGATCAGATAAGTGTAGCTA
AAGCTACCACTTATCACTTTGTCACT
Found at i:722425 original size:38 final size:41
Alignment explanation
Indices: 722252--722426 Score: 151
Period size: 45 Copynumber: 4.0 Consensus size: 41
722242 TACTTGTCCC
* * *
722252 TGATCAGATAAGTGTAGCTAGGCTACCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTA---AAGC-CTTATCACTTTATCACT
* *
722297 TGATCAGATAAGTGTAGCT-AGGCTCCCACTTATCACTTTGTCACT
1 TGATCAGATAAGTGTAGCTAAAG----C-CTTATCACTTTATCACT
722342 TGATCAGATAAGTGTAGCTAAAGCTACCACTTATCACTTTATCACT
1 TGATCAGATAAGTGTAGCTAAAG----C-CTTATCACTTTATCACT
722388 TGATCAGATAAGTGTAGCTAAAG-C-TATCAC-TTATCACT
1 TGATCAGATAAGTGTAGCTAAAGCCTTATCACTTTATCACT
722426 T
1 T
722427 TGTCACTTTT
Statistics
Matches: 119, Mismatches: 6, Indels: 17
0.84 0.04 0.12
Matches are distributed among these distances:
38 9 0.08
39 6 0.05
40 1 0.01
45 57 0.48
46 46 0.39
ACGTcount: A:0.29, C:0.22, G:0.16, T:0.33
Consensus pattern (41 bp):
TGATCAGATAAGTGTAGCTAAAGCCTTATCACTTTATCACT
Found at i:726403 original size:21 final size:20
Alignment explanation
Indices: 726379--726418 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
726369 CACCTATCAA
*
726379 AATTAATTAGTTAATATTTGT
1 AATTAATTA-CTAATATTTGT
*
726400 AATTTATTACTAATATTTG
1 AATTAATTACTAATATTTG
726419 CTGATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (20 bp):
AATTAATTACTAATATTTGT
Found at i:727194 original size:21 final size:20
Alignment explanation
Indices: 727161--727199 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
727151 AAAAATCAGA
*
727161 AAATATTAGTAATAAATTAC
1 AAATATTACTAATAAATTAC
*
727181 AAATATTAACTAATTAATT
1 AAATATT-ACTAATAAATT
727200 TTGATAGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 7 0.44
21 9 0.56
ACGTcount: A:0.54, C:0.05, G:0.03, T:0.38
Consensus pattern (20 bp):
AAATATTACTAATAAATTAC
Found at i:735932 original size:10 final size:10
Alignment explanation
Indices: 735905--735946 Score: 57
Period size: 10 Copynumber: 4.0 Consensus size: 10
735895 TGACAGGCCC
735905 AAAAAGAAAAG
1 AAAAA-AAAAG
735916 AAGAAAAAAAG
1 AA-AAAAAAAG
735927 AAAAAAAAAG
1 AAAAAAAAAG
*
735937 AAAAATAAAG
1 AAAAAAAAAG
735947 GTTTCAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
10 17 0.59
11 9 0.31
12 3 0.10
ACGTcount: A:0.83, C:0.00, G:0.14, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:741101 original size:32 final size:35
Alignment explanation
Indices: 741064--741130 Score: 86
Period size: 32 Copynumber: 2.0 Consensus size: 35
741054 AAGTTTCATC
*
741064 AAATTAAGTTATT-AATTACT-AT-ATTTAATTAA
1 AAATTAAGTTATTAAATTAATAATAATTTAATTAA
* *
741096 AAATTAATTTTTTAAATTAATAATAATTTAATTAA
1 AAATTAAGTTATTAAATTAATAATAATTTAATTAA
741131 TTACTTATTT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 11 0.38
33 6 0.21
34 2 0.07
35 10 0.34
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (35 bp):
AAATTAAGTTATTAAATTAATAATAATTTAATTAA
Found at i:741824 original size:23 final size:23
Alignment explanation
Indices: 741812--741856 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
741802 TTAAATTTAT
741812 TATTAAGATAAATATTATTTAAA
1 TATTAAGATAAATATTATTTAAA
*
741835 TATTAAGATAAGTATTATTTAA
1 TATTAAGATAAATATTATTTAA
741857 CTTTATTAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.07, T:0.44
Consensus pattern (23 bp):
TATTAAGATAAATATTATTTAAA
Found at i:741868 original size:29 final size:27
Alignment explanation
Indices: 741800--741869 Score: 76
Period size: 23 Copynumber: 2.6 Consensus size: 27
741790 TAAATGCTAA
741800 ATTTAAATTTATTATTAAGATAAATATT
1 ATTT-AATTTATTATTAAGATAAATATT
*
741828 ATTTAA---A-TATTAAGATAAGTATT
1 ATTTAATTTATTATTAAGATAAATATT
741851 ATTTAACTTTATTAATTAA
1 ATTTAA-TTTATT-ATTAA
741870 ATATGACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 11
0.74 0.02 0.23
Matches are distributed among these distances:
23 21 0.60
24 1 0.03
27 3 0.09
28 5 0.14
29 5 0.14
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (27 bp):
ATTTAATTTATTATTAAGATAAATATT
Found at i:744890 original size:13 final size:13
Alignment explanation
Indices: 744872--744896 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
744862 TTGCTCATCT
744872 TTTATTTACTTTC
1 TTTATTTACTTTC
744885 TTTATTTACTTT
1 TTTATTTACTTT
744897 TTTCCGTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.12, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTACTTTC
Found at i:751143 original size:932 final size:932
Alignment explanation
Indices: 749334--751210 Score: 3740
Period size: 932 Copynumber: 2.0 Consensus size: 932
749324 ATAAATTAGT
749334 TTAAAT-TAATTTTATTTAAAATTTAATATATATCTATAATATATTTTATTATCGGAAAAACAAA
1 TTAAATATAATTTTATTTAAAATTTAATATATATCTATAATATATTTTATTATCGGAAAAACAAA
749398 TTTAATAGATAATAAATCATTAAAAATTCTAAAATAATTTAAGCAATTTTATTTTTAATTATGAG
66 TTTAATAGATAATAAATCATTAAAAATTCTAAAATAATTTAAGCAATTTTATTTTTAATTATGAG
749463 ATTCATTAATAATATTAATGTAAGAAATATAAACTCATACTTAATACATAATTAGAAATTACTGT
131 ATTCATTAATAATATTAATGTAAGAAATATAAACTCATACTTAATACATAATTAGAAATTACTGT
749528 AAAACTTCTTGAGATAAAAGCAAGATTTTCTCCATATGGAATTTCATGATGAAATTCAAATTAAA
196 AAAACTTCTTGAGATAAAAGCAAGATTTTCTCCATATGGAATTTCATGATGAAATTCAAATTAAA
749593 AGTAATATAAATATTTTTCAATTTAAAAAAAAATATCATTGAGTCTAAAATGGGTTTGGGTTAGC
261 AGTAATATAAATATTTTTCAATTTAAAAAAAAATATCATTGAGTCTAAAATGGGTTTGGGTTAGC
749658 TATTTGCAAATATGGACGAGTTTGAGCAAAATTTTAGGCTAATATTTTGAGTTAGGTCGCGCTTT
326 TATTTGCAAATATGGACGAGTTTGAGCAAAATTTTAGGCTAATATTTTGAGTTAGGTCGCGCTTT
749723 GACAAGTATAAAGTGTGTTAATATTATATTTAAGCCTGACTTGGACCTGATCTAACCCACAAATA
391 GACAAGTATAAAGTGTGTTAATATTATATTTAAGCCTGACTTGGACCTGATCTAACCCACAAATA
749788 CTTCTAACCTAAACTAAAATAAAAATAATCCAAATAGTCGAAATCAAAATTGAAAGAAACTAAGA
456 CTTCTAACCTAAACTAAAATAAAAATAATCCAAATAGTCGAAATCAAAATTGAAAGAAACTAAGA
749853 TAGAATATCATGACATAATATAAATATGATACATTTAAATACTGTTAATTTATTGAATTTAATTC
521 TAGAATATCATGACATAATATAAATATGATACATTTAAATACTGTTAATTTATTGAATTTAATTC
749918 TTATTAAAAATCTTGGATTAAATGAGTTATTCACATTAATTTGAAGGTTATTTAATATTTAGTAA
586 TTATTAAAAATCTTGGATTAAATGAGTTATTCACATTAATTTGAAGGTTATTTAATATTTAGTAA
749983 GTTTAGATATAAAATGTGAATTTGGTAAAAAAAGAAAATTAAAGACATTTAAAAAATGTTCGAGC
651 GTTTAGATATAAAATGTGAATTTGGTAAAAAAAGAAAATTAAAGACATTTAAAAAATGTTCGAGC
750048 TTGAAAGTTTAACTCAGAAGTTATTTGTTTTCAAGTTTACATTTTATTTTATTTTATTTTATTAT
716 TTGAAAGTTTAACTCAGAAGTTATTTGTTTTCAAGTTTACATTTTATTTTATTTTATTTTATTAT
750113 TATATAATTTATATTAGATAAAAATTAAATATATTTTACAATAATTAAAAGTTTGTTAAATTATT
781 TATATAATTTATATTAGATAAAAATTAAATATATTTTACAATAATTAAAAGTTTGTTAAATTATT
750178 TATATTTATAATTTCATGAGCTAGGCAAAAAAACATATGATTTTGAAATCATAGATAAGTCCAAT
846 TATATTTATAATTTCATGAGCTAGGCAAAAAAACATATGATTTTGAAATCATAGATAAGTCCAAT
750243 CTAGCGCATAGACATTTTTATA
911 CTAGCGCATAGACATTTTTATA
750265 TTAAATATAATTTTATTTAAAATTTAATATATATCTATAATATATTTTATTATCGGAAAAACAAA
1 TTAAATATAATTTTATTTAAAATTTAATATATATCTATAATATATTTTATTATCGGAAAAACAAA
750330 TTTAATAGATAATAAATCATTAAAAATTCTAAAATAATTTAAGCAATTTTATTTTTAATTATGAG
66 TTTAATAGATAATAAATCATTAAAAATTCTAAAATAATTTAAGCAATTTTATTTTTAATTATGAG
750395 ATTCATTAATAATATTAATGTAAGAAATATAAACTCATACTTAATACATAATTAGAAATTACTGT
131 ATTCATTAATAATATTAATGTAAGAAATATAAACTCATACTTAATACATAATTAGAAATTACTGT
750460 AAAACTTCTTGAGATAAAAGCAAGATTTTCTCCATATGGAATTTCATGATGAAATTCAAATTAAA
196 AAAACTTCTTGAGATAAAAGCAAGATTTTCTCCATATGGAATTTCATGATGAAATTCAAATTAAA
750525 AGTAATATAAATATTTTTCAATTTAAAAAAAAATATCATTGAGTCTAAAATGGGTTTGGGTTAGC
261 AGTAATATAAATATTTTTCAATTTAAAAAAAAATATCATTGAGTCTAAAATGGGTTTGGGTTAGC
750590 TATTTGCAAATATGGACGAGTTTGAGCAAAATTTTAGGCTAATATTTTGAGTTAGGTCGCGCTTT
326 TATTTGCAAATATGGACGAGTTTGAGCAAAATTTTAGGCTAATATTTTGAGTTAGGTCGCGCTTT
750655 GACAAGTATAAAGTGTGTTAATATTATATTTAAGCCTGACTTGGACCTGATCTAACCCACAAATA
391 GACAAGTATAAAGTGTGTTAATATTATATTTAAGCCTGACTTGGACCTGATCTAACCCACAAATA
750720 CTTCTAACCTAAACTAAAATAAAAATAATCCAAATAGTCGAAATCAAAATTGAAAGAAACTAAGA
456 CTTCTAACCTAAACTAAAATAAAAATAATCCAAATAGTCGAAATCAAAATTGAAAGAAACTAAGA
750785 TAGAATATCATGACATAATATAAATATGATACATTTAAATACTGTTAATTTATTGAATTTAATTC
521 TAGAATATCATGACATAATATAAATATGATACATTTAAATACTGTTAATTTATTGAATTTAATTC
750850 TTATTAAAAATCTTGGATTAAATGAGTTATTCACATTAATTTGAAGGTTATTTAATATTTAGTAA
586 TTATTAAAAATCTTGGATTAAATGAGTTATTCACATTAATTTGAAGGTTATTTAATATTTAGTAA
750915 GTTTAGATATAAAATGTGAATTTGGTAAAAAAAGAAAATTAAAGACATTTAAAAAATGTTCGAGC
651 GTTTAGATATAAAATGTGAATTTGGTAAAAAAAGAAAATTAAAGACATTTAAAAAATGTTCGAGC
750980 TTGAAAGTTTAACTCAGAAGTTATTTGTTTTCAAGTTTACATTTTATTTTATTTTATTTTATTAT
716 TTGAAAGTTTAACTCAGAAGTTATTTGTTTTCAAGTTTACATTTTATTTTATTTTATTTTATTAT
751045 TATATAATTTATATTAGATAAAAATTAAATATATTTTACAATAATTAAAAGTTTGTTAAATTATT
781 TATATAATTTATATTAGATAAAAATTAAATATATTTTACAATAATTAAAAGTTTGTTAAATTATT
751110 TATATTTATAATTTCATGAGCTAGGCAAAAAAACATATGATTTTGAAATCATAGATAAGTCCAAT
846 TATATTTATAATTTCATGAGCTAGGCAAAAAAACATATGATTTTGAAATCATAGATAAGTCCAAT
751175 CTAGCGCATAGACATTTTTATA
911 CTAGCGCATAGACATTTTTATA
751197 TTAAATAT-ATTTTA
1 TTAAATATAATTTTA
751211 AATATATTTT
Statistics
Matches: 945, Mismatches: 0, Indels: 2
1.00 0.00 0.00
Matches are distributed among these distances:
931 12 0.01
932 933 0.99
ACGTcount: A:0.42, C:0.08, G:0.11, T:0.38
Consensus pattern (932 bp):
TTAAATATAATTTTATTTAAAATTTAATATATATCTATAATATATTTTATTATCGGAAAAACAAA
TTTAATAGATAATAAATCATTAAAAATTCTAAAATAATTTAAGCAATTTTATTTTTAATTATGAG
ATTCATTAATAATATTAATGTAAGAAATATAAACTCATACTTAATACATAATTAGAAATTACTGT
AAAACTTCTTGAGATAAAAGCAAGATTTTCTCCATATGGAATTTCATGATGAAATTCAAATTAAA
AGTAATATAAATATTTTTCAATTTAAAAAAAAATATCATTGAGTCTAAAATGGGTTTGGGTTAGC
TATTTGCAAATATGGACGAGTTTGAGCAAAATTTTAGGCTAATATTTTGAGTTAGGTCGCGCTTT
GACAAGTATAAAGTGTGTTAATATTATATTTAAGCCTGACTTGGACCTGATCTAACCCACAAATA
CTTCTAACCTAAACTAAAATAAAAATAATCCAAATAGTCGAAATCAAAATTGAAAGAAACTAAGA
TAGAATATCATGACATAATATAAATATGATACATTTAAATACTGTTAATTTATTGAATTTAATTC
TTATTAAAAATCTTGGATTAAATGAGTTATTCACATTAATTTGAAGGTTATTTAATATTTAGTAA
GTTTAGATATAAAATGTGAATTTGGTAAAAAAAGAAAATTAAAGACATTTAAAAAATGTTCGAGC
TTGAAAGTTTAACTCAGAAGTTATTTGTTTTCAAGTTTACATTTTATTTTATTTTATTTTATTAT
TATATAATTTATATTAGATAAAAATTAAATATATTTTACAATAATTAAAAGTTTGTTAAATTATT
TATATTTATAATTTCATGAGCTAGGCAAAAAAACATATGATTTTGAAATCATAGATAAGTCCAAT
CTAGCGCATAGACATTTTTATA
Found at i:759883 original size:24 final size:23
Alignment explanation
Indices: 759833--759885 Score: 63
Period size: 24 Copynumber: 2.2 Consensus size: 23
759823 TTAATTTTTT
*
759833 TATATTTTTTAATTAATTAAATAA
1 TATATTTTTTAATT-ATCAAATAA
759857 TATATTTTTATAATT-TCAAATATA
1 TATATTTTT-TAATTATCAAATA-A
759881 TATAT
1 TATAT
759886 GTGCTAATTA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
23 6 0.23
24 15 0.58
25 5 0.19
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
TATATTTTTTAATTATCAAATAA
Found at i:761252 original size:2 final size:2
Alignment explanation
Indices: 761247--761280 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
761237 TTGATCAAGG
761247 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
761281 GTCCAATTCT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:770463 original size:18 final size:20
Alignment explanation
Indices: 770419--770466 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 20
770409 TTTTGTTGAG
770419 TGCAACAACTTGTATGCATGC
1 TGCAACAACTTG-ATGCATGC
* *
770440 TACAACAA-TTG-TGCATGT
1 TGCAACAACTTGATGCATGC
770458 TGCAACAAC
1 TGCAACAAC
770467 ATATGTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 13 0.57
20 3 0.13
21 7 0.30
ACGTcount: A:0.33, C:0.23, G:0.17, T:0.27
Consensus pattern (20 bp):
TGCAACAACTTGATGCATGC
Found at i:771319 original size:952 final size:958
Alignment explanation
Indices: 769457--771763 Score: 3777
Period size: 952 Copynumber: 2.4 Consensus size: 958
769447 TGTTGTTCAG
*
769457 CTTGTATGCATACTACAACAATTGTGCATGTTGCAGCAACATAT-TTTCTGTTTTAGTT-TCAAT
1 CTTGTATGCATGCTACAACAATTGTGCATGTTGCAGCAACATATGTTT-TGTTTTAGTTGT-AAT
* *
769520 TTTATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGA
64 GTAATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGA
* * * *
769585 GCTGATAAGTCAGCTTATTCATGTGTACAAGCAATGTTTTACTATTCCCAATGCTGATTAGTGGG
129 ACTGATAAGTCAGCTTATTCTTGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGG
* * *
769650 ATTACTTAAATATTTGGTGATGTATTTTGATTATAAATGTATTGTTTTCATACTGAATGAGAAAG
194 ATTAGTTGAATATTTGGTGATGTATTTTGATTATAAATGTATTGTTTTCATATTGAATGAGAAAG
*
769715 CATATCAGTTGTGTAAAGTAGATTGCTTCCTTAATGCACGTTTGTGAGCAAGTAAATTATGTCAA
259 CATATCAGTTGTGTAAAGTAGATTGCTTCCTTAATGCACATTTGTGAGCAAGTAAATTATGTCAA
*
769780 GCTTCTTGCTCCTTTGTTCTCTGTCTTGTGCTCTTCTTTTGCTGTTGTCAAAACCCAACAAATTG
324 GCTTCTTGCTCCTTTGTTCTCTGTCTTGTTCTCTTCTTTTGCTGTTGTCAAAACCCAACAAATTG
*
769845 TATCATGAGCCCAAGTCTTTAAAGGTTTGTTTTTTGCTTATGTTGCTTGTTAAGAAAGACAAGAA
389 TATCATGAGCCCAAGTC-------------TTTTTGCTTATGTTGCTTGTTAAGAAAGACAAAAA
*
769910 GCTGTTAAAGCTTGTCATCTTTAAGGGTTGTTTGTAAAAGATAGAGCAACAACTCACCCTTGTGA
441 GCTGTTAAAGCTTGTCATCTTTAAGGGTTGTTTGTAAAAGATAGAGCAACAACTCACCCATGTGA
* *
769975 GACTCCTAAACAAGCTTGGGATAAGCTAAAGGAGGAGTTGATGGGGTATGTGTATGAAGACACTC
506 GACTCCTAAACAAGCTTGAGATAAGCTAAAGGAGGAGTTGATGGGGTATGTGCATGAAGACACTC
*
770040 CACAGCAGGAGGGAGTATGTGCAAGAAGAAACAGGACTATAATGAACAAAGAAAAAAGGTAAGAT
571 CACAGCAGGAGGGAGTATGTGCAAGAAGAAACAGGACTATAATGAACAAAGAAAAAAGGCAAGAT
*
770105 GTGTTTGAAGGCAAGTTGCCAACCAAGGCTGTGAAGAAGGAGAAGACTCCATTTGATGAACAACT
636 GTGTTTGAAGGCAAGTTGCCAACCAAGGCTATGAAGAAGGAGAAGACTCCATTTGATGAACAACT
* *
770170 CTTTGGCACAAAAAAATGGGATAATCAAGTGTGTAAGTCATATTTTTTTGAGAATGAAGATAAGG
701 CTTTGGCACAAAAAAATGGGATAATCAAGTGTGTAAGTCATATTTTGTTGAGAATGAAGACAAGG
*
770235 TTGAAAATGAATTGCTTGAGTAGAGTCAGCTTGAAATAAAGCATCTAAGGACTGCCAAGCTAAAA
766 TTGAAAATGAATTGCTTGAGCAGAGTCAGCTTGAAATAAAGCATCTAAGGACTGCCAAGCTAAAA
* * *
770300 AATACTTGATGAATGATTGGTATTTTCAACATGGAGGCCAAGAAGGAGTGTTGAAAATGGCCAAC
831 AAAACTTGATGAATGATTGGTATTTTCAACATGGAGGCCAAGAAGGACTGTTGAAAATGACCAAC
* **
770365 CATGCTGCTATTATGTTTTGTTAAAGTGCATGTTGTTATGATGATTTTGTTGAGTGCA-ACAA
896 CATGCTACTATTATGTTTTGTTAAAGTGCATACTGTTATGATGATTTTGTTGAGTGCATACAA
*
770427 CTTGTATGCATGCTACAACAATTGTGCATGTTGCAACAACATATGTTTTGTTTTAGTTGTAATGT
1 CTTGTATGCATGCTACAACAATTGTGCATGTTGCAGCAACATATGTTTTGTTTTAGTTGTAATGT
770492 AATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGAAC
66 AATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGAAC
*
770557 TGATAAGTCAGCTTATTCTTGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGACTAGTGGGAT
131 TGATAAGTCAGCTTATTCTTGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGAT
* *
770622 TAGTTGAATATTTGGTGATGTATTTTGATTATAAATGTGTTATTTTCATATTGAATGAGAAAGCA
196 TAGTTGAATATTTGGTGATGTATTTTGATTATAAATGTATTGTTTTCATATTGAATGAGAAAGCA
* * * * *
770687 TATCAGTTGTGTAAAGCAGATTACTTCATTGATAG-ACATTTGTGAGCAAGTACATTATGTCAAG
261 TATCAGTTGTGTAAAGTAGATTGCTTCCTTAAT-GCACATTTGTGAGCAAGTAAATTATGTCAAG
*
770751 CTTCTTGCTCCTTTGTTCTCTGTCTTGTTCTATTCTTTTGCTGTTGTCAAAACCCAACAAATTGT
325 CTTCTTGCTCCTTTGTTCTCTGTCTTGTTCTCTTCTTTTGCTGTTGTCAAAACCCAACAAATTGT
770816 ATCATGAGCCCAAGTC-TTTT-C-T-T-TTGCTTGTTAAGAAAGACAAAAAGCTGTTAAAGCTTG
390 ATCATGAGCCCAAGTCTTTTTGCTTATGTTGCTTGTTAAGAAAGACAAAAAGCTGTTAAAGCTTG
* *
770876 TCATCTTTGAGGGTTGTTTGTAAAAGATAGAGCAACAGCTCACCCATGTGAGACTCCTAAACAAG
455 TCATCTTTAAGGGTTGTTTGTAAAAGATAGAGCAACAACTCACCCATGTGAGACTCCTAAACAAG
* * *
770941 CTTGAGATAAGCTGAAGGAGGAGTTGATGGGGTATGTGCATGAAGACATTCCACAGCGGGAGGGA
520 CTTGAGATAAGCTAAAGGAGGAGTTGATGGGGTATGTGCATGAAGACACTCCACAGCAGGAGGGA
* * * * *
771006 GTATGTGCAAGAAGAAACATGACTGTAATGAACAAGGAAACAAGGCAAGATGTGTTTGAAGGTAA
585 GTATGTGCAAGAAGAAACAGGACTATAATGAACAAAGAAAAAAGGCAAGATGTGTTTGAAGGCAA
* * * * *
771071 GTTGCCAACCAAGGCTATGAAGGAGGAGAAGACTCTATTTGATGAACAACTTTTTGGCATAAAAG
650 GTTGCCAACCAAGGCTATGAAGAAGGAGAAGACTCCATTTGATGAACAACTCTTTGGCACAAAAA
*
771136 AATGGGATAATCAAGTGTGTAATTCATATTTTGTTGAGAATGAAGACAAGGTTGAAAATGAATTG
715 AATGGGATAATCAAGTGTGTAAGTCATATTTTGTTGAGAATGAAGACAAGGTTGAAAATGAATTG
771201 CTTGAGCAGAGTCAGCTTGAAATAAAGCATCTAAGGACTGCCAAGCTAAAAAAAACTTGATGAAT
780 CTTGAGCAGAGTCAGCTTGAAATAAAGCATCTAAGGACTGCCAAGCTAAAAAAAACTTGATGAAT
* * *
771266 GATTGGTATTTTCAACATGGAGGCCAAGGAGGACTGTTGAAAATGACCAACCATGTTACTGTTAT
845 GATTGGTATTTTCAACATGGAGGCCAAGAAGGACTGTTGAAAATGACCAACCATGCTACTATTAT
* *
771331 GTTTTGTTAAAGTGCATACTGTTATGATGATTTTGTTGAGTGCATATAG
910 GTTTTGTTAAAGTGCATACTGTTATGATGATTTTGTTGAGTGCATACAA
* * * *
771380 CTTGTATGCATGCTACAAAAATTGTGCATGTTGCAGCAACATATGTTCTCTTTTAGTTGCAATGT
1 CTTGTATGCATGCTACAACAATTGTGCATGTTGCAGCAACATATGTTTTGTTTTAGTTGTAATGT
*
771445 AATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAAGTGATGATTGAAC
66 AATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGAAC
* *
771510 TGATAAGTCAGCTTATTCTTGTGTACAAGCAATATTTTAATAGTCTCAATGCTGATTAGTGGGAT
131 TGATAAGTCAGCTTATTCTTGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGAT
* *
771575 TAGTTGAATATTTGGTGATGTAGTTTGATTATAAATGTATTGTTTTAATATTGAATGAGAAAGCA
196 TAGTTGAATATTTGGTGATGTATTTTGATTATAAATGTATTGTTTTCATATTGAATGAGAAAGCA
*
771640 TATCAGTTGTGTAAAGTAGATTGCTTCCTTAATGCATATTTGTGAGCAAGTAAATTATGTCAAGC
261 TATCAGTTGTGTAAAGTAGATTGCTTCCTTAATGCACATTTGTGAGCAAGTAAATTATGTCAAGC
*
771705 TTCTTGCTCCTTTGTTCTCTGTCTTGTTCTCTTCTTTTGTTGTTGTCAAAACCCCAACA
326 TTCTTGCTCCTTTGTTCTCTGTCTTGTTCTCTTCTTTTGCTGTTGTCAAAA-CCCAACA
771764 TGTATCCAAG
Statistics
Matches: 1252, Mismatches: 79, Indels: 28
0.92 0.06 0.02
Matches are distributed among these distances:
952 503 0.40
953 356 0.28
954 8 0.01
955 1 0.00
956 4 0.00
970 375 0.30
971 5 0.00
ACGTcount: A:0.30, C:0.13, G:0.22, T:0.35
Consensus pattern (958 bp):
CTTGTATGCATGCTACAACAATTGTGCATGTTGCAGCAACATATGTTTTGTTTTAGTTGTAATGT
AATTTAGTTTGGTTGAAAATGAACTTAGTTGTTGATGTTTTGATGGGTTTAGGTGATGATTGAAC
TGATAAGTCAGCTTATTCTTGTGTACAAGCAATGTTTTAATAGTCCCAATGCTGATTAGTGGGAT
TAGTTGAATATTTGGTGATGTATTTTGATTATAAATGTATTGTTTTCATATTGAATGAGAAAGCA
TATCAGTTGTGTAAAGTAGATTGCTTCCTTAATGCACATTTGTGAGCAAGTAAATTATGTCAAGC
TTCTTGCTCCTTTGTTCTCTGTCTTGTTCTCTTCTTTTGCTGTTGTCAAAACCCAACAAATTGTA
TCATGAGCCCAAGTCTTTTTGCTTATGTTGCTTGTTAAGAAAGACAAAAAGCTGTTAAAGCTTGT
CATCTTTAAGGGTTGTTTGTAAAAGATAGAGCAACAACTCACCCATGTGAGACTCCTAAACAAGC
TTGAGATAAGCTAAAGGAGGAGTTGATGGGGTATGTGCATGAAGACACTCCACAGCAGGAGGGAG
TATGTGCAAGAAGAAACAGGACTATAATGAACAAAGAAAAAAGGCAAGATGTGTTTGAAGGCAAG
TTGCCAACCAAGGCTATGAAGAAGGAGAAGACTCCATTTGATGAACAACTCTTTGGCACAAAAAA
ATGGGATAATCAAGTGTGTAAGTCATATTTTGTTGAGAATGAAGACAAGGTTGAAAATGAATTGC
TTGAGCAGAGTCAGCTTGAAATAAAGCATCTAAGGACTGCCAAGCTAAAAAAAACTTGATGAATG
ATTGGTATTTTCAACATGGAGGCCAAGAAGGACTGTTGAAAATGACCAACCATGCTACTATTATG
TTTTGTTAAAGTGCATACTGTTATGATGATTTTGTTGAGTGCATACAA
Found at i:777051 original size:56 final size:56
Alignment explanation
Indices: 776972--777130 Score: 284
Period size: 56 Copynumber: 2.8 Consensus size: 56
776962 CTTTGAGAAT
*
776972 TCATGGGTTAGTAATGGTTGATGCAGCAAACTCTTTTCATAAATTAATA-AGAATTC
1 TCATGGGTTAGTAATGGTTGATGCAACAAACTCTTTTCATAAATTAATAGA-AATTC
777028 TCATGGGTTAGTAATGGTTGATGCAACAAACTCTTTTCATAAATTAATAGAAATTC
1 TCATGGGTTAGTAATGGTTGATGCAACAAACTCTTTTCATAAATTAATAGAAATTC
*
777084 TCATGGGTTAGTAATGGTTGATGCAACCAACTCTTTTCATAAATTAA
1 TCATGGGTTAGTAATGGTTGATGCAACAAACTCTTTTCATAAATTAA
777131 AGATTGAATT
Statistics
Matches: 100, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
56 99 0.99
57 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (56 bp):
TCATGGGTTAGTAATGGTTGATGCAACAAACTCTTTTCATAAATTAATAGAAATTC
Found at i:779434 original size:20 final size:21
Alignment explanation
Indices: 779384--779441 Score: 73
Period size: 20 Copynumber: 2.8 Consensus size: 21
779374 AAAAGAGAAA
779384 GAAAAACTTGGGATTTTATAGG
1 GAAAAACTTGGG-TTTTATAGG
**
779406 GAATTACTTGGGTTTTATA-G
1 GAAAAACTTGGGTTTTATAGG
*
779426 GAAAAACTTGAGTTTT
1 GAAAAACTTGGGTTTT
779442 TACAAGAAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 14 0.45
21 7 0.23
22 10 0.32
ACGTcount: A:0.33, C:0.05, G:0.24, T:0.38
Consensus pattern (21 bp):
GAAAAACTTGGGTTTTATAGG
Found at i:787883 original size:18 final size:18
Alignment explanation
Indices: 787856--787890 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
787846 AATCGTTTTT
787856 CAAAAAGAAAAAAAAGAA
1 CAAAAAGAAAAAAAAGAA
* *
787874 CAAAATGAAAACAAAGA
1 CAAAAAGAAAAAAAAGA
787891 GAGGGAGAGG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.77, C:0.09, G:0.11, T:0.03
Consensus pattern (18 bp):
CAAAAAGAAAAAAAAGAA
Found at i:791897 original size:156 final size:156
Alignment explanation
Indices: 791716--792028 Score: 563
Period size: 156 Copynumber: 2.0 Consensus size: 156
791706 ACATGCATAA
791716 ATTATATTTAATTCCTATTTTTAATAATAATATATTGAAAAATGCAATACATGTATGTTGACTAA
1 ATTATATTTAATTCCTATTTTTAATAATAATATATTGAAAAATGCAATACATGTATGTTGACTAA
*
791781 AATTACAAGAAACCCTTTCACTAAGGTTAAAAGGAAAACAAAATTGTTTGATTTGATACAGAGTG
66 AATTACAAGAAACCCTTTCACTAAAGTTAAAAGGAAAACAAAATTGTTTGATTTGATACAGAGTG
*
791846 ATTTATGTGACATGCATAATACTCCT
131 ATTTATGTGACATACATAATACTCCT
791872 ATTATATTTAATTCCTATTTTTAATAATAATATATTGAAAAATGCAATACATGTATGTTGACTAA
1 ATTATATTTAATTCCTATTTTTAATAATAATATATTGAAAAATGCAATACATGTATGTTGACTAA
** * * *
791937 AATTACAAGAAACCCTTTCTTTAAAGTTAAAAGGAAAACAAAGTTGTTTGATTTGATATATAGTG
66 AATTACAAGAAACCCTTTCACTAAAGTTAAAAGGAAAACAAAATTGTTTGATTTGATACAGAGTG
792002 ATTTATGTGACATACATAATACTCCT
131 ATTTATGTGACATACATAATACTCCT
792028 A
1 A
792029 AATTAGGTGG
Statistics
Matches: 150, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
156 150 1.00
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.37
Consensus pattern (156 bp):
ATTATATTTAATTCCTATTTTTAATAATAATATATTGAAAAATGCAATACATGTATGTTGACTAA
AATTACAAGAAACCCTTTCACTAAAGTTAAAAGGAAAACAAAATTGTTTGATTTGATACAGAGTG
ATTTATGTGACATACATAATACTCCT
Found at i:793858 original size:22 final size:22
Alignment explanation
Indices: 793830--793874 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
793820 TACAGAAAGC
793830 TTATAGAGATATACACAAGGAA
1 TTATAGAGATATACACAAGGAA
**
793852 TTATAGAGATATACTGAAGGAA
1 TTATAGAGATATACACAAGGAA
793874 T
1 T
793875 GAAATAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (22 bp):
TTATAGAGATATACACAAGGAA
Found at i:794201 original size:10 final size:11
Alignment explanation
Indices: 794174--794199 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
794164 TTAAAAATAA
794174 AAAAATATTTT
1 AAAAATATTTT
794185 AAAAATATTTT
1 AAAAATATTTT
794196 AAAA
1 AAAA
794200 TAAAATAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:797519 original size:20 final size:20
Alignment explanation
Indices: 797496--797538 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
797486 TTAAAAAACA
* **
797496 TATAATTATTCATTTAATAT
1 TATAACTATTCAAATAATAT
797516 TATAACTATTCAAATAATAT
1 TATAACTATTCAAATAATAT
797536 TAT
1 TAT
797539 TTGAACAGTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.00, T:0.49
Consensus pattern (20 bp):
TATAACTATTCAAATAATAT
Found at i:803387 original size:20 final size:21
Alignment explanation
Indices: 803362--803404 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
803352 TTAGATTGGC
* *
803362 TTGATTTTTTTTTAA-TAATA
1 TTGATTTTGTTATAAGTAATA
803382 TTGATTTTGTTATAAGTAATA
1 TTGATTTTGTTATAAGTAATA
803403 TT
1 TT
803405 TTATTATGGA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 13 0.65
21 7 0.35
ACGTcount: A:0.30, C:0.00, G:0.09, T:0.60
Consensus pattern (21 bp):
TTGATTTTGTTATAAGTAATA
Found at i:805111 original size:26 final size:27
Alignment explanation
Indices: 805061--805135 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
805051 TTTTGTGTAG
805061 ATTAAGATAATTAGGAGTTTAAATTAA
1 ATTAAGATAATTAGGAGTTTAAATTAA
* * *
805088 ATTAGGATAATTA-GAGTTTTAATTTAG
1 ATTAAGATAATTAGGAG-TTTAAATTAA
* *
805115 A-TGAGATAATTAGGAATTTAA
1 ATTAAGATAATTAGGAGTTTAA
805136 GTTTTGCAAA
Statistics
Matches: 40, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
26 17 0.43
27 23 0.57
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.39
Consensus pattern (27 bp):
ATTAAGATAATTAGGAGTTTAAATTAA
Found at i:806723 original size:6 final size:6
Alignment explanation
Indices: 806712--806737 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
806702 GCAGAAATCT
806712 TCTTCC TCTTCC TCTTCC TCTTCC TC
1 TCTTCC TCTTCC TCTTCC TCTTCC TC
806738 CACTTTATCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTTCC
Found at i:811053 original size:15 final size:16
Alignment explanation
Indices: 811033--811064 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
811023 TTGACCTTAA
811033 TCGAGCT-ATTCATGC
1 TCGAGCTCATTCATGC
811048 TCGAGCTCATTCATGC
1 TCGAGCTCATTCATGC
811064 T
1 T
811065 AAACTTATTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.19, C:0.28, G:0.19, T:0.34
Consensus pattern (16 bp):
TCGAGCTCATTCATGC
Found at i:811945 original size:23 final size:23
Alignment explanation
Indices: 811889--811954 Score: 62
Period size: 24 Copynumber: 2.8 Consensus size: 23
811879 TATTATTGAA
811889 AAATATT-TATATTAATATTTTAC
1 AAATATTATATATTAA-ATTTTAC
* * *
811912 GAATAAATATATATTAAATTTTAT
1 AAAT-ATTATATATTAAATTTTAC
*
811936 AAATATTATAGTATAAAAT
1 AAATATTATA-TATTAAAT
811955 ATGAGTATTT
Statistics
Matches: 34, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
23 8 0.24
24 18 0.53
25 8 0.24
ACGTcount: A:0.50, C:0.02, G:0.03, T:0.45
Consensus pattern (23 bp):
AAATATTATATATTAAATTTTAC
Found at i:814172 original size:21 final size:20
Alignment explanation
Indices: 814148--814245 Score: 58
Period size: 21 Copynumber: 4.7 Consensus size: 20
814138 TGATAAAGGT
814148 ACACAGCCATGTGACTGAGAG
1 ACACAGCCATGTGACTGAG-G
** *
814169 ACAC-GCCCATACGACTGAGTT
1 ACACAG-CCATGTGACTGAG-G
* * *
814190 ACACGGCCGTGTGGCTGAGG
1 ACACAGCCATGTGACTGAGG
814210 A-ACA-CGCATGTGTGACTGAGG
1 ACACAGC-CA--TGTGACTGAGG
814231 TACACAGCCATGTGA
1 -ACACAGCCATGTGA
814246 GTAAGTATTG
Statistics
Matches: 57, Mismatches: 12, Indels: 16
0.67 0.14 0.19
Matches are distributed among these distances:
18 1 0.02
19 3 0.05
20 2 0.04
21 43 0.75
22 2 0.04
23 5 0.09
24 1 0.02
ACGTcount: A:0.28, C:0.26, G:0.30, T:0.17
Consensus pattern (20 bp):
ACACAGCCATGTGACTGAGG
Found at i:814496 original size:30 final size:30
Alignment explanation
Indices: 814448--814590 Score: 133
Period size: 30 Copynumber: 4.8 Consensus size: 30
814438 AGTTTTTAAG
* * * * *
814448 GCGGCACACGACCATGTGGATCGCTCATGC
1 GCGGCACATGCCCGTGTGGACCGCCCATGC
* * * *
814478 GCGACACATGGCCGTGTGGACCGCCCGTGA
1 GCGGCACATGCCCGTGTGGACCGCCCATGC
*
814508 GCGGCACATGCCCGTGTGGACCGCCCTTGC
1 GCGGCACATGCCCGTGTGGACCGCCCATGC
* * *
814538 GTGGCACATGCCCGTGTCGACCGCCCGTGC
1 GCGGCACATGCCCGTGTGGACCGCCCATGC
* ** *
814568 ACGGCACACACCCGTATGGACCG
1 GCGGCACATGCCCGTGTGGACCG
814591 TTCGTGCGCG
Statistics
Matches: 92, Mismatches: 21, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
30 92 1.00
ACGTcount: A:0.16, C:0.37, G:0.32, T:0.15
Consensus pattern (30 bp):
GCGGCACATGCCCGTGTGGACCGCCCATGC
Found at i:814526 original size:60 final size:61
Alignment explanation
Indices: 814448--814576 Score: 154
Period size: 60 Copynumber: 2.1 Consensus size: 61
814438 AGTTTTTAAG
* * * *
814448 GCGGCACACGACCATGTGGATCGCTCATGCGCGACACATGGCCGTGTGGACCGCCCGTG-A
1 GCGGCACACGACCATGTGGACCGCCCATGCGCGACACATGCCCGTGTCGACCGCCCGTGCA
* * * * * *
814508 GCGGCACATGCCCGTGTGGACCGCCCTTGCGTGGCACATGCCCGTGTCGACCGCCCGTGCA
1 GCGGCACACGACCATGTGGACCGCCCATGCGCGACACATGCCCGTGTCGACCGCCCGTGCA
814569 -CGGCACAC
1 GCGGCACAC
814577 ACCCGTATGG
Statistics
Matches: 57, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
60 56 0.98
61 1 0.02
ACGTcount: A:0.16, C:0.37, G:0.33, T:0.15
Consensus pattern (61 bp):
GCGGCACACGACCATGTGGACCGCCCATGCGCGACACATGCCCGTGTCGACCGCCCGTGCA
Found at i:820530 original size:19 final size:19
Alignment explanation
Indices: 820513--820560 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
820503 AAATATAAAC
820513 TTTTGAAATTTTTATAAATA
1 TTTTG-AATTTTTATAAATA
*
820533 TTTTGAA-TTTTAAAAATTA
1 TTTTGAATTTTTATAAA-TA
820552 TTTTGAATT
1 TTTTGAATT
820561 ATTTTATAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
18 8 0.32
19 11 0.44
20 6 0.24
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (19 bp):
TTTTGAATTTTTATAAATA
Found at i:825683 original size:26 final size:26
Alignment explanation
Indices: 825622--825684 Score: 69
Period size: 27 Copynumber: 2.5 Consensus size: 26
825612 GGGGTTCATG
* *
825622 TATATAAAT--ATTTTTTTTTTAATT
1 TATATAAATAAATATTTTTTTAAATT
825646 TA-ATACACATAAATATTTTTTTAAATT
1 TATATA-A-ATAAATATTTTTTTAAATT
825673 TATATAAATAAA
1 TATATAAATAAA
825685 AAGTTAATAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
23 3 0.09
24 3 0.09
25 2 0.06
26 5 0.16
27 16 0.50
28 3 0.09
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.52
Consensus pattern (26 bp):
TATATAAATAAATATTTTTTTAAATT
Found at i:826418 original size:63 final size:62
Alignment explanation
Indices: 826299--826418 Score: 145
Period size: 63 Copynumber: 1.9 Consensus size: 62
826289 GACAAAAAAA
* * * **
826299 ATCAAATATAAATTTGAAAAAAAACTCAGATACCAAAATGAATATTGAAGCCAAACTTATGT
1 ATCAAATATAAATTTAAAAAAAAACTCAAACACCAAAATGAATATTGAAGAAAAACTTATGT
*
826361 ATCAAAT-TAAAATTTAAAAAAAAAACTCAAACACCAAACTGAATATTGCAA-AAAAACT
1 ATCAAATAT-AAATTT-AAAAAAAAACTCAAACACCAAAATGAATATTG-AAGAAAAACT
826419 AGTACCTAAT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
61 1 0.02
62 13 0.27
63 33 0.67
64 2 0.04
ACGTcount: A:0.56, C:0.14, G:0.07, T:0.23
Consensus pattern (62 bp):
ATCAAATATAAATTTAAAAAAAAACTCAAACACCAAAATGAATATTGAAGAAAAACTTATGT
Found at i:828316 original size:26 final size:26
Alignment explanation
Indices: 828252--828317 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
828242 GATTTTTTTA
*
828252 AAAAAATTATATAATTTTTTTGGTAC
1 AAAAAATTATATAATTTTTTTGCTAC
*
828278 AAAATATTATATAAATTTTATTTTGCT-C
1 AAAAAATTATAT-AA-TTT-TTTTGCTAC
828306 AAAAAATTATAT
1 AAAAAATTATAT
828318 TGTTGAAAAA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 11 0.32
27 2 0.06
28 15 0.44
29 6 0.18
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (26 bp):
AAAAAATTATATAATTTTTTTGCTAC
Found at i:830435 original size:25 final size:26
Alignment explanation
Indices: 830405--830464 Score: 70
Period size: 25 Copynumber: 2.3 Consensus size: 26
830395 ATTATGCCAC
*
830405 TAATTTAGA-TATTTTTAAAATTTTTA
1 TAATTTA-ATTATTTTTAAAATTTTAA
* *
830431 -AATTTAATTTTTTTTATAATTTTAA
1 TAATTTAATTATTTTTAAAATTTTAA
830456 TAATTTAAT
1 TAATTTAAT
830465 CTTCGCACTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 20 0.69
26 8 0.28
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
TAATTTAATTATTTTTAAAATTTTAA
Found at i:830460 original size:26 final size:25
Alignment explanation
Indices: 830416--830464 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
830406 AATTTAGATA
*
830416 TTTTTAAAATTTTTAAATTTAATTT
1 TTTTTAAAATTTTAAAATTTAATTT
*
830441 TTTTTATAATTTTAATAATTTAAT
1 TTTTTAAAATTTTAA-AATTTAAT
830465 CTTCGCACTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (25 bp):
TTTTTAAAATTTTAAAATTTAATTT
Found at i:834614 original size:47 final size:47
Alignment explanation
Indices: 834548--834641 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 47
834538 GCCTTTATTT
* *
834548 TTTCAATTCCCATCAAAAC-TATCTCCTATTTCAATTCCGACTTCTA
1 TTTCAATTCCCACCAAAACTTATCTCCTATTTCAATTCCAACTTCTA
*
834594 TTTCAAATTCCCACCAAAACTTATCTCCTATTTCAATTTCAACTTCTA
1 TTTC-AATTCCCACCAAAACTTATCTCCTATTTCAATTCCAACTTCTA
834642 AATTTGCTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
46 4 0.09
47 14 0.33
48 25 0.58
ACGTcount: A:0.30, C:0.30, G:0.01, T:0.39
Consensus pattern (47 bp):
TTTCAATTCCCACCAAAACTTATCTCCTATTTCAATTCCAACTTCTA
Found at i:853095 original size:25 final size:24
Alignment explanation
Indices: 853018--853093 Score: 109
Period size: 24 Copynumber: 3.1 Consensus size: 24
853008 GTGCTTCCCG
*
853018 TTAAGTGCTCTTTGGAACTACCCA
1 TTAAGTGCTCTTTGGAGCTACCCA
853042 TTAAGTGCTCTTTGGAGCTACCCA
1 TTAAGTGCTCTTTGGAGCTACCCA
*
853066 TTATAG-GCTCTTTGTGAGCTTCCCA
1 TTA-AGTGCTCTTTG-GAGCTACCCA
853091 TTA
1 TTA
853094 TATTGCCCGG
Statistics
Matches: 48, Mismatches: 2, Indels: 3
0.91 0.04 0.06
Matches are distributed among these distances:
24 34 0.71
25 14 0.29
ACGTcount: A:0.21, C:0.24, G:0.18, T:0.37
Consensus pattern (24 bp):
TTAAGTGCTCTTTGGAGCTACCCA
Found at i:858666 original size:27 final size:27
Alignment explanation
Indices: 858614--858666 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
858604 TTGCTTGTAT
***
858614 ATCTATACTATTATTCTTTTTGGTGAA
1 ATCTATACTATTATTCTAAGTGGTGAA
858641 ATCTATACTATTATT-TAAGTGTGTGA
1 ATCTATACTATTATTCTAAGTG-GTGA
858667 CAGAGTTAGT
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
26 3 0.14
27 19 0.86
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.49
Consensus pattern (27 bp):
ATCTATACTATTATTCTAAGTGGTGAA
Found at i:863799 original size:18 final size:17
Alignment explanation
Indices: 863776--863809 Score: 59
Period size: 18 Copynumber: 1.9 Consensus size: 17
863766 TAGAAGTTAT
863776 AATAATTATATATTTAAA
1 AATAATTATA-ATTTAAA
863794 AATAATTATAATTTAA
1 AATAATTATAATTTAA
863810 TTTTTAATTA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
AATAATTATAATTTAAA
Found at i:864150 original size:23 final size:22
Alignment explanation
Indices: 864111--864153 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 22
864101 GTTAAAGGTG
864111 TTTTAATTATATGATTTGAAAA
1 TTTTAATTATATGATTTGAAAA
864133 TTTTATATTATAAT-ATTTGAA
1 TTTTA-ATTAT-ATGATTTGAA
864154 TTGATAAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
22 5 0.26
23 12 0.63
24 2 0.11
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (22 bp):
TTTTAATTATATGATTTGAAAA
Found at i:870739 original size:26 final size:26
Alignment explanation
Indices: 870703--870758 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
870693 AAAACATTTT
870703 AACTCTCATTCTTTCAATTTTGGTCA
1 AACTCTCATTCTTTCAATTTTGGTCA
*
870729 AACTCTTATTCTTTCAATTTTGGTCA
1 AACTCTCATTCTTTCAATTTTGGTCA
870755 AACT
1 AACT
870759 GATAATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.21, G:0.07, T:0.46
Consensus pattern (26 bp):
AACTCTCATTCTTTCAATTTTGGTCA
Found at i:871043 original size:19 final size:19
Alignment explanation
Indices: 871019--871058 Score: 71
Period size: 19 Copynumber: 2.1 Consensus size: 19
871009 ATTGAATTGA
871019 GATTGCATAAATTGAAATT
1 GATTGCATAAATTGAAATT
*
871038 GATTGCGTAAATTGAAATT
1 GATTGCATAAATTGAAATT
871057 GA
1 GA
871059 AATTGTAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.40, C:0.05, G:0.20, T:0.35
Consensus pattern (19 bp):
GATTGCATAAATTGAAATT
Found at i:878283 original size:17 final size:18
Alignment explanation
Indices: 878251--878292 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
878241 CAAAGAAAGA
*
878251 TGAAGAACATTTTAGATG
1 TGAAAAACATTTTAGATG
878269 TGAAAAACA-TTTAGATG
1 TGAAAAACATTTTAGATG
878286 TGAAAAA
1 TGAAAAA
878293 TTTAGCAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 15 0.65
18 8 0.35
ACGTcount: A:0.48, C:0.05, G:0.19, T:0.29
Consensus pattern (18 bp):
TGAAAAACATTTTAGATG
Found at i:878824 original size:17 final size:17
Alignment explanation
Indices: 878802--878837 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
878792 TGTTAAATTC
878802 CCCTAAGCACCTAGTTA
1 CCCTAAGCACCTAGTTA
878819 CCCTAAGCACCTAGTTA
1 CCCTAAGCACCTAGTTA
878836 CC
1 CC
878838 TTTGGATTCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.28, C:0.39, G:0.11, T:0.22
Consensus pattern (17 bp):
CCCTAAGCACCTAGTTA
Found at i:879803 original size:22 final size:21
Alignment explanation
Indices: 879765--879810 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
879755 CGAAAATATA
*
879765 TTAAATATATATATTTTATTT
1 TTAAATATATATATTTTAGTT
879786 TTAAA-ATATACTAGTTTTAGTT
1 TTAAATATATA-TA-TTTTAGTT
879808 TTA
1 TTA
879811 TTTTAAGTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 5 0.23
21 7 0.32
22 10 0.45
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (21 bp):
TTAAATATATATATTTTAGTT
Found at i:879863 original size:16 final size:16
Alignment explanation
Indices: 879842--879911 Score: 69
Period size: 16 Copynumber: 4.7 Consensus size: 16
879832 ATTTTGTTAC
879842 AACAATTAATACAATT
1 AACAATTAATACAATT
*
879858 AACAATTAATA-ATTT
1 AACAATTAATACAATT
* * *
879873 GATAATT-TTAC---T
1 AACAATTAATACAATT
879885 AACAATTAATACAATT
1 AACAATTAATACAATT
879901 AACAATTAATA
1 AACAATTAATA
879912 ATTTTACTAA
Statistics
Matches: 42, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
12 6 0.14
13 3 0.07
14 2 0.05
15 8 0.19
16 23 0.55
ACGTcount: A:0.53, C:0.10, G:0.01, T:0.36
Consensus pattern (16 bp):
AACAATTAATACAATT
Found at i:879916 original size:35 final size:34
Alignment explanation
Indices: 879852--879924 Score: 103
Period size: 35 Copynumber: 2.1 Consensus size: 34
879842 AACAATTAAT
* *
879852 ACAATTAACAATTAATAATTTGATAATTTTACTA
1 ACAATTAACAATTAACAATTTAATAATTTTACTA
879886 ACAATTAATACAATTAACAA-TTAATAATTTTACTA
1 ACAATT-A-ACAATTAACAATTTAATAATTTTACTA
879921 ACAA
1 ACAA
879925 AATGTTAGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 3
0.88 0.05 0.08
Matches are distributed among these distances:
34 6 0.17
35 19 0.54
36 10 0.29
ACGTcount: A:0.51, C:0.11, G:0.01, T:0.37
Consensus pattern (34 bp):
ACAATTAACAATTAACAATTTAATAATTTTACTA
Found at i:879922 original size:19 final size:19
Alignment explanation
Indices: 879874--879924 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 19
879864 TAATAATTTG
879874 ATAATTTTACTAACAATTA
1 ATAATTTTACTAACAATTA
*
879893 ATACA----ATTAACAATTA
1 ATA-ATTTTACTAACAATTA
879909 ATAATTTTACTAACAA
1 ATAATTTTACTAACAA
879925 AATGTTAGAT
Statistics
Matches: 25, Mismatches: 2, Indels: 10
0.68 0.05 0.27
Matches are distributed among these distances:
15 1 0.04
16 13 0.52
19 10 0.40
20 1 0.04
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (19 bp):
ATAATTTTACTAACAATTA
Found at i:880002 original size:22 final size:23
Alignment explanation
Indices: 879959--880036 Score: 86
Period size: 22 Copynumber: 3.2 Consensus size: 23
879949 ACTAGTATAA
879959 AAAAATATAATTTGATACAATTTTAAT
1 AAAAATATAATTT--T--AATTTTAAT
* *
879986 AACAAT-TAGTTTTAATTTTAAT
1 AAAAATATAATTTTAATTTTAAT
880008 AAAAATATAATTTTAATTTTAATT
1 AAAAATATAATTTTAATTTTAA-T
880032 AAAAA
1 AAAAA
880037 ACGGGCCGGG
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
22 14 0.31
23 14 0.31
24 7 0.16
26 5 0.11
27 5 0.11
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.44
Consensus pattern (23 bp):
AAAAATATAATTTTAATTTTAAT
Found at i:883478 original size:5 final size:5
Alignment explanation
Indices: 883470--883508 Score: 53
Period size: 5 Copynumber: 7.8 Consensus size: 5
883460 ACACGACACA
*
883470 AAAAT AAAAT AAAAT AAAAT AAAAG AAACA- AAAAT AAAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA-AT AAAAT AAAA
883509 ACTAAAAAAA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
4 1 0.03
5 29 0.94
6 1 0.03
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (5 bp):
AAAAT
Found at i:883490 original size:15 final size:15
Alignment explanation
Indices: 883467--883508 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
883457 GTAACACGAC
*
883467 ACAAAAATAAAATAA
1 ACAAAAATAAAAGAA
883482 A-ATAAAATAAAAGAA
1 ACA-AAAATAAAAGAA
883497 ACAAAAATAAAA
1 ACAAAAATAAAA
883509 ACTAAAAAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
14 1 0.04
15 22 0.92
16 1 0.04
ACGTcount: A:0.81, C:0.05, G:0.02, T:0.12
Consensus pattern (15 bp):
ACAAAAATAAAAGAA
Found at i:889946 original size:17 final size:16
Alignment explanation
Indices: 889926--889962 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
889916 AAACCAGAAG
*
889926 TTAACATAATTATACAT
1 TTAAAATAATTATA-AT
889943 TTAAAATAATTATAAT
1 TTAAAATAATTATAAT
889959 TTAA
1 TTAA
889963 TTTTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 6 0.32
17 13 0.68
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.43
Consensus pattern (16 bp):
TTAAAATAATTATAAT
Found at i:890122 original size:21 final size:24
Alignment explanation
Indices: 890081--890145 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 24
890071 AGAAGTTGTG
* * *
890081 TTAATTTTATTGATTTAAAATAGAA
1 TTAATTATATT-AATTAAATTAGAA
*
890106 TT-ATTAT-TTAATTAAATTTAGAG
1 TTAATTATATTAATTAAA-TTAGAA
890129 TTAATTATATTAATTAA
1 TTAATTATATTAATTAA
890146 TTATTGTTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
22 6 0.18
23 8 0.24
24 9 0.27
25 10 0.30
ACGTcount: A:0.43, C:0.00, G:0.06, T:0.51
Consensus pattern (24 bp):
TTAATTATATTAATTAAATTAGAA
Found at i:891041 original size:14 final size:14
Alignment explanation
Indices: 891022--891049 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
891012 AGTCTATTTA
891022 TGAAACCTTGTTTT
1 TGAAACCTTGTTTT
891036 TGAAACCTTGTTTT
1 TGAAACCTTGTTTT
891050 GGTATTATAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.21, C:0.14, G:0.14, T:0.50
Consensus pattern (14 bp):
TGAAACCTTGTTTT
Found at i:898193 original size:20 final size:20
Alignment explanation
Indices: 898168--898227 Score: 102
Period size: 20 Copynumber: 3.0 Consensus size: 20
898158 TTCACCTCAT
898168 GCATCGCATCATATGCATTA
1 GCATCGCATCATATGCATTA
*
898188 GCATCGCATCATATGTATTA
1 GCATCGCATCATATGCATTA
*
898208 GCATCTCATCATATGCATTA
1 GCATCGCATCATATGCATTA
898228 AAGACCTTTA
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.33
Consensus pattern (20 bp):
GCATCGCATCATATGCATTA
Found at i:906423 original size:100 final size:100
Alignment explanation
Indices: 906291--906979 Score: 904
Period size: 100 Copynumber: 6.9 Consensus size: 100
906281 GGTTGAAAAG
* *
906291 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCTTAGCAGTGTAACAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGC
*
906356 TACGACGGCGGATCTGGTTTCCCTAATATTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * *
906391 TCAAAAGATTAAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACAGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGC
* * * *
906456 TACGACGGCAGATCTAGTTTTCCTGACATTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * * * *
906491 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCT-GACGGTGCAGCGAAATAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGTAACGGAACAGATTGAAG
906555 CTACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
65 CTACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* *
906591 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCTTAGCAGTGTAACGGAACGGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGC
** * * *
906656 TACGACGGTAGATCTAGTTTTCCTGACATTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * * *
906691 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCCT-GACTGTGCAGCGGAACAGATTGAAG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAG-CAGTGTAACGGAACAGATTGAAG
* *
906755 CTACGACGGCGGATATGGTTTCCCTGATATTGTAAT
65 CTACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
* * * *
906791 TAAAAAGATTGAAGCTACAACGGCGGATCTTACTTCCTTAGTAGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGC
* * * *
906856 TACGACGGCAGATCTAGTTTTCCTGACATTTGCAAT
66 TACGACGGCGGATCTGGTTTCCCTGATA-TTGCAAT
* *
906892 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCT-G-ACG-GT-ACGGTGGAACAGATTG
1 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCA-GTGTAAC---GGAACAGATTG
*
906953 AAGCTACGACGGCGGATCTGGCTTCCC
62 AAGCTACGACGGCGGATCTGGTTTCCC
906980 CAACATTGCA
Statistics
Matches: 514, Mismatches: 66, Indels: 17
0.86 0.11 0.03
Matches are distributed among these distances:
98 1 0.00
99 4 0.01
100 431 0.84
101 78 0.15
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (100 bp):
TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGC
TACGACGGCGGATCTGGTTTCCCTGATATTGCAAT
Found at i:906634 original size:200 final size:200
Alignment explanation
Indices: 906291--906979 Score: 1085
Period size: 200 Copynumber: 3.4 Consensus size: 200
906281 GGTTGAAAAG
* * * *
906291 TAAAAAGATTGAAGCCACAACGACGGATCTTACTT-CCTTAGCAGTGTAAC-AGAACAGATTGAA
1 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGA-CGGTGCAGCGA-AACAGATTGAA
* * *
906354 GCTACGACGGCGGATCTGGTTTCCCTAATATTGCAATTCAAAAGATTAAAGCCACAACGGCGGAT
64 GCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGAT
*
906419 CTTACTTCCTTAGCAGTGTAACAGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACA
129 CTTACTTCCTTAGCAGTGTAACGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACA
906484 TTGCAAT
194 TTGCAAT
* *
906491 TAAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACGGTGCAGCGAAATAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTGCAGCGAAACAGATTGAAGC
*
906556 TACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCAGATCT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
* *
906621 TACTTCCTTAGCAGTGTAACGGAACGGATTGAAGCTACGACGGTAGATCTAGTTTTCCTGACATT
131 TACTTCCTTAGCAGTGTAACGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACATT
906686 GCAAT
196 GCAAT
* * * *
906691 TAAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCCTGACTGTGCAGCGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTGCAGCGAAACAGATTGAAGC
* * *
906756 TACGACGGCGGATATGGTTTCCCTGATATTGTAATTAAAAAGATTGAAGCTACAACGGCGGATCT
66 TACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
* * *
906821 TACTTCCTTAGTAGTGCAGCGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACATT
131 TACTTCCTTAGCAGTGTAACGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACA-T
906886 TGCAAT
195 TGCAAT
* * * *
906892 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTACGGTGGAACAGATTGAAGC
1 TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTGCAGCGAAACAGATTGAAGC
*
906957 TACGACGGCGGATCTGGCTTCCC
66 TACGACGGCGGATCTGGTTTCCC
906980 CAACATTGCA
Statistics
Matches: 452, Mismatches: 34, Indels: 5
0.92 0.07 0.01
Matches are distributed among these distances:
200 360 0.80
201 92 0.20
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (200 bp):
TAAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTGCAGCGAAACAGATTGAAGC
TACGACGGCGGATCTGGTTTCCCTGATATTGCAATTAAAAAGATTGAAGCCACAACGGCGGATCT
TACTTCCTTAGCAGTGTAACGGAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACATT
GCAAT
Found at i:906997 original size:50 final size:50
Alignment explanation
Indices: 906342--907005 Score: 393
Period size: 50 Copynumber: 13.3 Consensus size: 50
906332 CAGTGTAACA
* * * *
906342 GAACAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTAATATTGCAATT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * * * * * * * **
906392 CAAAAGATTAAAGCCACAACGGCGGATCTTACTT-CCTTAGCAGTGTAACA
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGA-CATTGCAATT
* * * *
906442 GAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACATTGCAATT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * * * ** **
906492 AAAAAGATTGAAGCCACAACGGCGGATCTTACTTCCCTGACGGTGC-AGC
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * *
906541 GAAATAGATTGAAGCTACGACGGCGGATCTGGTTTCCCTGATATTGCAATT
1 G-AACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * * * * * * * **
906592 AAAAAGATTGAAGCCACAACGGCAGATCTTACTT-CCTTAGCAGTGTAACG
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGA-CATTGCAATT
* ** * * *
906642 GAACGGATTGAAGCTACGACGGTAGATCTAGTTTTCCTGACATTGCAATT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * * * * ***
906692 AAAAAGATTGAAGCCACAACGGCAGATCTTACTTCCCTGAC-TGTGCAGCG
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACAT-TGCAATT
* * * * *
906742 GAACAGATTGAAGCTACGACGGCGGATATGGTTTCCCTGATATTGTAATT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* * * * * * * ***
906792 AAAAAGATTGAAGCTACAACGGCGGATCTTACTT-CCTTAGTAGTGCAGCG
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGA-CATTGCAATT
* * * *
906842 GAACAGATTGAAGCTACGACGGCAGATCTAGTTTTCCTGACATTTGCAATT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACA-TTGCAATT
* * * * * * ** * ** *
906893 AAAAAGATTGAAGCCACAACGACGGATCTTACTTCCCTGACGGTACGGTG
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
* ** *
906943 GAACAGATTGAAGCTACGACGGCGGATCTGGCTTCCCCAACATTGCAGTT
1 GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
*
906993 GAACAAATTGAAG
1 GAACAGATTGAAG
907006 ATTACAGATC
Statistics
Matches: 438, Mismatches: 165, Indels: 22
0.70 0.26 0.04
Matches are distributed among these distances:
49 14 0.03
50 375 0.86
51 49 0.11
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (50 bp):
GAACAGATTGAAGCTACGACGGCGGATCTTGCTTCCCTGACATTGCAATT
Found at i:908763 original size:3 final size:3
Alignment explanation
Indices: 908755--908821 Score: 134
Period size: 3 Copynumber: 22.3 Consensus size: 3
908745 TTTATCCTGT
908755 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
908803 TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA T
908822 ATACGCCTAT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 64 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:911099 original size:13 final size:13
Alignment explanation
Indices: 911081--911105 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
911071 GACACCCTTC
911081 TTTTACTTTTTTT
1 TTTTACTTTTTTT
911094 TTTTACTTTTTT
1 TTTTACTTTTTT
911106 ATTAACTTTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTACTTTTTTT
Found at i:911179 original size:9 final size:9
Alignment explanation
Indices: 911163--911196 Score: 52
Period size: 9 Copynumber: 3.8 Consensus size: 9
911153 TATATTTTTC
911163 TTATTTTAT
1 TTATTTTAT
911172 TT-TGTTTAT
1 TTAT-TTTAT
911181 TTATTTTAT
1 TTATTTTAT
911190 TTATTTT
1 TTATTTT
911197 TAAAAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
8 1 0.04
9 21 0.91
10 1 0.04
ACGTcount: A:0.18, C:0.00, G:0.03, T:0.79
Consensus pattern (9 bp):
TTATTTTAT
Found at i:911478 original size:18 final size:18
Alignment explanation
Indices: 911441--911480 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
911431 AATATATATA
*
911441 TTTTTAAATAAATTTATT
1 TTTTTAAATAAATCTATT
911459 TTTTTAAAATAAATCT-TT
1 TTTTT-AAATAAATCTATT
911477 TTTT
1 TTTT
911481 AACAAATNNN
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTTTAAATAAATCTATT
Found at i:911487 original size:19 final size:19
Alignment explanation
Indices: 911446--911487 Score: 50
Period size: 19 Copynumber: 2.2 Consensus size: 19
911436 ATATATTTTT
* *
911446 AAATAAATTTATTTTTTTA
1 AAATAAATCTATTTTTTAA
911465 AAATAAATCT-TTTTTTAA
1 AAATAAATCTATTTTTTAA
911483 CAAAT
1 -AAAT
911488 NNNNNNNNNN
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
18 7 0.35
19 13 0.65
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (19 bp):
AAATAAATCTATTTTTTAA
Found at i:912759 original size:22 final size:23
Alignment explanation
Indices: 912707--912765 Score: 72
Period size: 22 Copynumber: 2.7 Consensus size: 23
912697 ATATCTTTAA
912707 AAATAAT-TTAAAAATCATAATT
1 AAATAATATTAAAAATCATAATT
*
912729 TAA-AATATTATAAAA-CA-AATT
1 AAATAATATTA-AAAATCATAATT
912750 AAATAATATTAAAAAT
1 AAATAATATTAAAAAT
912766 ATTTAAAAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
21 13 0.42
22 14 0.45
23 4 0.13
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (23 bp):
AAATAATATTAAAAATCATAATT
Found at i:913441 original size:9 final size:9
Alignment explanation
Indices: 913427--913545 Score: 51
Period size: 8 Copynumber: 13.7 Consensus size: 9
913417 TAATAACAAT
913427 AAATAAATA
1 AAATAAATA
913436 AAATAAATA
1 AAATAAATA
913445 AACA-AAATA
1 AA-ATAAATA
913454 AAATAAGA-A
1 AAATAA-ATA
*
913463 AAA-ATATA
1 AAATAAATA
913471 AAACTTAAA-A
1 AAA--TAAATA
*
913481 AAAGAAA-A
1 AAATAAATA
*
913489 AAATTAAAGA
1 AAA-TAAATA
* *
913499 AAA-AGACA
1 AAATAAATA
*
913507 AAAGTTAATA
1 AAA-TAAATA
*
913517 AAA-AAGTA
1 AAATAAATA
913525 AAA-AAAT-
1 AAATAAATA
913532 AAA-AAATA
1 AAATAAATA
913540 AAATAA
1 AAATAA
913546 GGGTGTCAGG
Statistics
Matches: 85, Mismatches: 12, Indels: 26
0.69 0.10 0.21
Matches are distributed among these distances:
7 8 0.09
8 31 0.36
9 29 0.34
10 15 0.18
11 2 0.02
ACGTcount: A:0.76, C:0.03, G:0.05, T:0.16
Consensus pattern (9 bp):
AAATAAATA
Found at i:913442 original size:13 final size:13
Alignment explanation
Indices: 913413--913455 Score: 59
Period size: 13 Copynumber: 3.2 Consensus size: 13
913403 AAATTTTTTA
*
913413 AAATTAATAACAAT
1 AAATAAATAA-AAT
913427 AAATAAATAAAAT
1 AAATAAATAAAAT
*
913440 AAATAAACAAAAT
1 AAATAAATAAAAT
913453 AAA
1 AAA
913456 ATAAGAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
13 18 0.67
14 9 0.33
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (13 bp):
AAATAAATAAAAT
Found at i:913446 original size:17 final size:16
Alignment explanation
Indices: 913424--913545 Score: 79
Period size: 18 Copynumber: 7.1 Consensus size: 16
913414 AATTAATAAC
913424 AATAAATAAATAAAATA
1 AATAAA-AAATAAAATA
913441 AATAAACAAAATAAAATA
1 AAT-AA-AAAATAAAATA
913459 AGA-AAAAATATAAAACTTA
1 A-ATAAAAA-ATAAAA--TA
*
913478 AA-AAAAGAAAAAAATTA
1 AATAAAA-AATAAAA-TA
* * *
913495 AAGAAAAAGACAAAAGTT
1 AATAAAAA-ATAAAA-TA
913513 AATAAAAAAGTAAAA-A
1 AATAAAAAA-TAAAATA
913529 AATAAAAAATAAAATA
1 AATAAAAAATAAAATA
913545 A
1 A
913546 GGGTGTCAGG
Statistics
Matches: 87, Mismatches: 7, Indels: 23
0.74 0.06 0.20
Matches are distributed among these distances:
15 5 0.06
16 14 0.16
17 18 0.21
18 44 0.51
19 6 0.07
ACGTcount: A:0.76, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
AATAAAAAATAAAATA
Found at i:913501 original size:19 final size:19
Alignment explanation
Indices: 913478--913531 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
913468 ATAAAACTTA
913478 AAAAAAGAAAAAAATTAA-
1 AAAAAAGAAAAAAATTAAT
* *
913496 AGAAAAAGACAAAAGTTAAT
1 A-AAAAAGAAAAAAATTAAT
913516 AAAAAAGTAAAAAAAT
1 AAAAAAG-AAAAAAAT
913532 AAAAAATAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.03
19 21 0.72
20 7 0.24
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (19 bp):
AAAAAAGAAAAAAATTAAT
Found at i:913519 original size:18 final size:17
Alignment explanation
Indices: 913470--913537 Score: 57
Period size: 19 Copynumber: 3.8 Consensus size: 17
913460 GAAAAAATAT
*
913470 AAAACTTAAAAAAAGAA
1 AAAAATTAAAAAAAGAA
*
913487 AAAAATTAAAGAAAAAGAC
1 AAAAATT-AA-AAAAAGAA
*
913506 AAAAGTTAATAAAAAAGTAA
1 AAAAATT-A-AAAAAAG-AA
913526 AAAAA-TAAAAAA
1 AAAAATTAAAAAA
913538 TAAAATAAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 8
0.76 0.09 0.15
Matches are distributed among these distances:
17 11 0.26
18 3 0.07
19 22 0.52
20 6 0.14
ACGTcount: A:0.76, C:0.03, G:0.07, T:0.13
Consensus pattern (17 bp):
AAAAATTAAAAAAAGAA
Found at i:914595 original size:23 final size:24
Alignment explanation
Indices: 914569--914615 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 24
914559 TTTCTTAAAA
*
914569 CTTTCTATTTTTTAA-AATTTTTT
1 CTTTCTAATTTTTAAGAATTTTTT
* *
914592 CTTTTTAATTTTTAAGTATTTTTT
1 CTTTCTAATTTTTAAGAATTTTTT
914616 AATTATTTTA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.21, C:0.06, G:0.02, T:0.70
Consensus pattern (24 bp):
CTTTCTAATTTTTAAGAATTTTTT
Found at i:915310 original size:21 final size:22
Alignment explanation
Indices: 915284--915330 Score: 69
Period size: 21 Copynumber: 2.2 Consensus size: 22
915274 TTTTAAAATT
*
915284 TAAAAATTATTAA-AAAATTCA
1 TAAAAATTATAAACAAAATTCA
*
915305 TAAAAATTATAAACAAAATTTA
1 TAAAAATTATAAACAAAATTCA
915327 TAAA
1 TAAA
915331 TAAAAGGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.52
22 11 0.48
ACGTcount: A:0.64, C:0.04, G:0.00, T:0.32
Consensus pattern (22 bp):
TAAAAATTATAAACAAAATTCA
Found at i:917976 original size:22 final size:22
Alignment explanation
Indices: 917938--917994 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 22
917928 AAATAATATA
* *
917938 ATAA-AAAATCAATTAAAAGGAT
1 ATAATAAAAT-AAATAAAACGAT
*
917960 ATAAGT-AAATAAATAAATCGAT
1 ATAA-TAAAATAAATAAAACGAT
917982 ATAATAAAATAAA
1 ATAATAAAATAAA
917995 CGTATTTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
21 1 0.03
22 24 0.83
23 4 0.14
ACGTcount: A:0.65, C:0.04, G:0.07, T:0.25
Consensus pattern (22 bp):
ATAATAAAATAAATAAAACGAT
Found at i:923822 original size:13 final size:13
Alignment explanation
Indices: 923806--923830 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
923796 ATAAAATATT
923806 TTTATAATTTGTG
1 TTTATAATTTGTG
923819 TTTATAATTTGT
1 TTTATAATTTGT
923831 TGATATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (13 bp):
TTTATAATTTGTG
Found at i:927054 original size:13 final size:14
Alignment explanation
Indices: 927036--927064 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
927026 TTTATATCAT
927036 TAATATTATTA-TA
1 TAATATTATTACTA
927049 TAATATTATTACTA
1 TAATATTATTACTA
927063 TA
1 TA
927065 GCATTATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.73
14 4 0.27
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (14 bp):
TAATATTATTACTA
Found at i:927451 original size:60 final size:60
Alignment explanation
Indices: 927325--927457 Score: 159
Period size: 60 Copynumber: 2.2 Consensus size: 60
927315 TATCTACACA
* *
927325 TTTATATACAT-TTTTTAATTTTCATATCTATATACTTTATATCTTATTTGTCGATATATC
1 TTTATATACATATTTTTAATTTTCATA-CTATATACTTCATATCTTATTTATCGATATATC
*
927385 TTTATATACATATTTTTAATTTTCATA-TATATA-TTGCATATTCCTTATTATATC-TTATA-C
1 TTTATATACATATTTTTAATTTTCATACTATATACTT-CATA-T-CTTATT-TATCGATATATC
927445 TTTATATACATAT
1 TTTATATACATAT
927458 ACATATACCC
Statistics
Matches: 65, Mismatches: 3, Indels: 10
0.83 0.04 0.13
Matches are distributed among these distances:
58 2 0.03
59 9 0.14
60 26 0.40
61 25 0.38
62 3 0.05
ACGTcount: A:0.31, C:0.11, G:0.02, T:0.56
Consensus pattern (60 bp):
TTTATATACATATTTTTAATTTTCATACTATATACTTCATATCTTATTTATCGATATATC
Found at i:932060 original size:29 final size:30
Alignment explanation
Indices: 932006--932081 Score: 120
Period size: 29 Copynumber: 2.6 Consensus size: 30
931996 TATGATTTGA
932006 AAATTT-TATATTATAATATTTGAATTAAT
1 AAATTTATATATTATAATATTTGAATTAAT
932035 AAATTTATATATTATAATATTT-AATTAAT
1 AAATTTATATATTATAATATTTGAATTAAT
* *
932064 AAGTTTATATATTTTAAT
1 AAATTTATATATTATAAT
932082 TATATTTAAT
Statistics
Matches: 44, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
29 29 0.66
30 15 0.34
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (30 bp):
AAATTTATATATTATAATATTTGAATTAAT
Found at i:935625 original size:8 final size:8
Alignment explanation
Indices: 935612--935654 Score: 59
Period size: 8 Copynumber: 5.2 Consensus size: 8
935602 AATAATTAAT
935612 TTTTAAAA
1 TTTTAAAA
935620 TTTTAAAA
1 TTTTAAAA
935628 TTTTAAAA
1 TTTTAAAA
* *
935636 ATTAAAAA
1 TTTTAAAA
935644 TTATTAAAA
1 TT-TTAAAA
935653 TT
1 TT
935655 AATAAAAATA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
8 23 0.77
9 7 0.23
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (8 bp):
TTTTAAAA
Found at i:935652 original size:9 final size:9
Alignment explanation
Indices: 935609--935670 Score: 53
Period size: 8 Copynumber: 7.3 Consensus size: 9
935599 GCGAATAATT
*
935609 AATTTTTAA
1 AATTATTAA
935618 AATT-TTAA
1 AATTATTAA
935626 AATT-TTAA
1 AATTATTAA
935634 AA--ATTAAA
1 AATTATT-AA
935642 AATTATTAA
1 AATTATTAA
*
935651 AATTAATAA
1 AATTATTAA
*
935660 AAATA-TAA
1 AATTATTAA
935668 AAT
1 AAT
935671 ATTTTTTTAA
Statistics
Matches: 46, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
7 2 0.04
8 23 0.50
9 18 0.39
10 3 0.07
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (9 bp):
AATTATTAA
Found at i:936326 original size:25 final size:25
Alignment explanation
Indices: 936289--936336 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
936279 AGTTAGCTAA
*
936289 CTGTTGAACGTTTCGGTTGTAAGTT
1 CTGTTGAACGTTTCAGTTGTAAGTT
936314 CTGTTGTAA-GTTTCAGTTGTAAG
1 CTGTTG-AACGTTTCAGTTGTAAG
936337 CAGTTAATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 19 0.90
26 2 0.10
ACGTcount: A:0.19, C:0.10, G:0.27, T:0.44
Consensus pattern (25 bp):
CTGTTGAACGTTTCAGTTGTAAGTT
Found at i:936334 original size:13 final size:13
Alignment explanation
Indices: 936298--936336 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
936288 ACTGTTGAAC
*
936298 GTTTCGGTTGTAA
1 GTTTCAGTTGTAA
*
936311 G-TTCTGTTGTAA
1 GTTTCAGTTGTAA
936323 GTTTCAGTTGTAA
1 GTTTCAGTTGTAA
936336 G
1 G
936337 CAGTTAATGG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
12 11 0.48
13 12 0.52
ACGTcount: A:0.18, C:0.08, G:0.28, T:0.46
Consensus pattern (13 bp):
GTTTCAGTTGTAA
Found at i:941527 original size:21 final size:21
Alignment explanation
Indices: 941461--941529 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 21
941451 CCATAAAAGT
941461 ATCACATGTATTATATTTTGA
1 ATCACATGTATTATATTTTGA
* * * *
941482 ATTACATTTTAGTTTTTTTTATTGA
1 ATCACA-TGTA--TTATATT-TTGA
941507 ATCACATGTATTATATTTTGA
1 ATCACATGTATTATATTTTGA
941528 AT
1 AT
941530 TTTGATTTGA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
21 11 0.31
22 8 0.22
24 8 0.22
25 9 0.25
ACGTcount: A:0.30, C:0.07, G:0.09, T:0.54
Consensus pattern (21 bp):
ATCACATGTATTATATTTTGA
Found at i:944951 original size:12 final size:12
Alignment explanation
Indices: 944934--944963 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
944924 TGATTTTCTC
944934 AAAATGGAAATG
1 AAAATGGAAATG
944946 AAAATGGAAATG
1 AAAATGGAAATG
*
944958 GAAATG
1 AAAATG
944964 ATAAATGATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.57, C:0.00, G:0.27, T:0.17
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:944958 original size:18 final size:19
Alignment explanation
Indices: 944935--944970 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
944925 GATTTTCTCA
944935 AAATGGAAATGA-AAATGG
1 AAATGGAAATGATAAATGG
944953 AAATGGAAATGATAAATG
1 AAATGGAAATGATAAATG
944971 ATTCATTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.25, T:0.19
Consensus pattern (19 bp):
AAATGGAAATGATAAATGG
Found at i:948343 original size:7 final size:7
Alignment explanation
Indices: 948328--948371 Score: 61
Period size: 7 Copynumber: 6.3 Consensus size: 7
948318 TATTTTGGGA
948328 TTAGAGT
1 TTAGAGT
*
948335 TTTGAGT
1 TTAGAGT
*
948342 TTAGGGT
1 TTAGAGT
*
948349 TTATAGT
1 TTAGAGT
948356 TTAGAGT
1 TTAGAGT
948363 TTAGAGT
1 TTAGAGT
948370 TT
1 TT
948372 GGGGTTTATT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (7 bp):
TTAGAGT
Found at i:948378 original size:14 final size:14
Alignment explanation
Indices: 948328--948379 Score: 59
Period size: 14 Copynumber: 3.7 Consensus size: 14
948318 TATTTTGGGA
* *
948328 TTAGAGTTTTGAGT
1 TTAGGGTTTAGAGT
*
948342 TTAGGGTTTATAGT
1 TTAGGGTTTAGAGT
*
948356 TTAGAGTTTAGAGT
1 TTAGGGTTTAGAGT
*
948370 TTGGGGTTTA
1 TTAGGGTTTA
948380 TTATTGTATA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
14 31 1.00
ACGTcount: A:0.21, C:0.00, G:0.31, T:0.48
Consensus pattern (14 bp):
TTAGGGTTTAGAGT
Found at i:948580 original size:14 final size:14
Alignment explanation
Indices: 948545--948716 Score: 69
Period size: 14 Copynumber: 11.9 Consensus size: 14
948535 AATATATATA
* *
948545 TTTAGGGTGTAGGG
1 TTTAGGGTTTATGG
* *
948559 TGTA-GGTTTATTG
1 TTTAGGGTTTATGG
* *
948572 TTTCGGGTTTAAGG
1 TTTAGGGTTTATGG
*
948586 TTTAGGGTTTATGA
1 TTTAGGGTTTATGG
* *
948600 TTTAGTG-TTAAGAG
1 TTTAGGGTTTATG-G
* *
948614 TTTAGTGTTTACGG
1 TTTAGGGTTTATGG
948628 TTTAAGGCGTAGGTTCATGG
1 TTT-AGG-GT---TT-ATGG
* *
948648 TTTAGTGTTTAAGG
1 TTTAGGGTTTATGG
* *
948662 CTTAAGGTTTATGG
1 TTTAGGGTTTATGG
** *
948676 TTTAGTATTTATGA
1 TTTAGGGTTTATGG
* *
948690 TTTAGGGCTTAGGGG
1 TTTAGGGTTTA-TGG
*
948705 CTTAGGGTTTAT
1 TTTAGGGTTTAT
948717 AATTTAGTGT
Statistics
Matches: 112, Mismatches: 36, Indels: 20
0.67 0.21 0.12
Matches are distributed among these distances:
13 12 0.11
14 68 0.61
15 18 0.16
16 2 0.02
18 2 0.02
19 4 0.04
20 6 0.05
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.45
Consensus pattern (14 bp):
TTTAGGGTTTATGG
Found at i:948581 original size:7 final size:7
Alignment explanation
Indices: 948545--948715 Score: 58
Period size: 7 Copynumber: 24.6 Consensus size: 7
948535 AATATATATA
948545 TTTAGGG
1 TTTAGGG
*
948552 TGTAGGG
1 TTTAGGG
*
948559 TGTA-GG
1 TTTAGGG
**
948565 TTTATTG
1 TTTAGGG
*
948572 TTTCGGG
1 TTTAGGG
*
948579 TTTAAGG
1 TTTAGGG
948586 TTTAGGG
1 TTTAGGG
* *
948593 TTTATGA
1 TTTAGGG
*
948600 TTTAGTG
1 TTTAGGG
* *
948607 TTAAGAG
1 TTTAGGG
*
948614 TTTAGTG
1 TTTAGGG
*
948621 TTTACGG
1 TTTAGGG
*
948628 TTTAAGG
1 TTTAGGG
**
948635 CGTA-GG
1 TTTAGGG
* *
948641 TTCATGG
1 TTTAGGG
*
948648 TTTAGTG
1 TTTAGGG
*
948655 TTTAAGG
1 TTTAGGG
* *
948662 CTTAAGG
1 TTTAGGG
*
948669 TTTATGG
1 TTTAGGG
**
948676 TTTAGTA
1 TTTAGGG
* *
948683 TTTATGA
1 TTTAGGG
948690 TTTAGGG
1 TTTAGGG
*
948697 CTTAGGGG
1 TTTA-GGG
*
948705 CTTAGGG
1 TTTAGGG
948712 TTTA
1 TTTA
948716 TAATTTAGTG
Statistics
Matches: 118, Mismatches: 43, Indels: 6
0.71 0.26 0.04
Matches are distributed among these distances:
6 8 0.07
7 103 0.87
8 7 0.06
ACGTcount: A:0.19, C:0.04, G:0.32, T:0.44
Consensus pattern (7 bp):
TTTAGGG
Found at i:948660 original size:49 final size:49
Alignment explanation
Indices: 948564--948656 Score: 118
Period size: 49 Copynumber: 1.9 Consensus size: 49
948554 TAGGGTGTAG
* ** *
948564 GTTTATTGTTTCGGGTTTAAGGTTTAGGGTTTATGATTTAGTGTTAAGA
1 GTTTAGTGTTTCGGGTTTAAGGCGTAGGGTTCATGATTTAGTGTTAAGA
*
948613 GTTTAGTGTTTAC-GGTTTAAGGCGTA-GGTTCATGGTTTAGTGTT
1 GTTTAGTGTTT-CGGGTTTAAGGCGTAGGGTTCATGATTTAGTGTT
948657 TAAGGCTTAA
Statistics
Matches: 38, Mismatches: 5, Indels: 3
0.83 0.11 0.07
Matches are distributed among these distances:
48 16 0.42
49 21 0.55
50 1 0.03
ACGTcount: A:0.18, C:0.04, G:0.30, T:0.47
Consensus pattern (49 bp):
GTTTAGTGTTTCGGGTTTAAGGCGTAGGGTTCATGATTTAGTGTTAAGA
Found at i:948678 original size:28 final size:28
Alignment explanation
Indices: 948580--948686 Score: 91
Period size: 28 Copynumber: 3.9 Consensus size: 28
948570 TGTTTCGGGT
*
948580 TTAAGGTTTAGGGTTTA-TGATTT-AGTG-
1 TTAAGGTTTATGGTTTAGTG-TTTAAG-GC
948607 TTAAGAGTTTA-GTGTTTACG-GTTTAAGGC
1 TTAAG-GTTTATG-GTTTA-GTGTTTAAGGC
* *
948636 GT-AGGTTCATGGTTTAGTGTTTAAGGC
1 TTAAGGTTTATGGTTTAGTGTTTAAGGC
*
948663 TTAAGGTTTATGGTTTAGTATTTA
1 TTAAGGTTTATGGTTTAGTGTTTA
948687 TGATTTAGGG
Statistics
Matches: 66, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
26 1 0.02
27 25 0.38
28 36 0.55
29 4 0.06
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46
Consensus pattern (28 bp):
TTAAGGTTTATGGTTTAGTGTTTAAGGC
Found at i:951823 original size:27 final size:27
Alignment explanation
Indices: 951793--951853 Score: 113
Period size: 27 Copynumber: 2.3 Consensus size: 27
951783 TGCAACTAGA
951793 TATTTTTCACATGCCAACCAACCAATT
1 TATTTTTCACATGCCAACCAACCAATT
*
951820 TATTATTCACATGCCAACCAACCAATT
1 TATTTTTCACATGCCAACCAACCAATT
951847 TATTTTT
1 TATTTTT
951854 GTCCTTTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.33, C:0.26, G:0.03, T:0.38
Consensus pattern (27 bp):
TATTTTTCACATGCCAACCAACCAATT
Found at i:951959 original size:27 final size:27
Alignment explanation
Indices: 951921--951992 Score: 144
Period size: 27 Copynumber: 2.7 Consensus size: 27
951911 ATCTTACCAA
951921 CCAACCAACCAATTTATTATTCACATG
1 CCAACCAACCAATTTATTATTCACATG
951948 CCAACCAACCAATTTATTATTCACATG
1 CCAACCAACCAATTTATTATTCACATG
951975 CCAACCAACCAATTTATT
1 CCAACCAACCAATTTATT
951993 TTTGTCCTTT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.38, C:0.31, G:0.03, T:0.29
Consensus pattern (27 bp):
CCAACCAACCAATTTATTATTCACATG
Found at i:953812 original size:14 final size:15
Alignment explanation
Indices: 953793--953825 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
953783 ATAAATAAAT
*
953793 AAATAAA-AGCTTCA
1 AAATAAACAGCTTAA
953807 AAATAAACAGCTTAA
1 AAATAAACAGCTTAA
953822 AAAT
1 AAAT
953826 TCGAAAATAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.61, C:0.12, G:0.06, T:0.21
Consensus pattern (15 bp):
AAATAAACAGCTTAA
Found at i:955865 original size:13 final size:13
Alignment explanation
Indices: 955833--955857 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
955823 ATAAAATATT
955833 TTTATAATTTGTG
1 TTTATAATTTGTG
955846 TTTATAATTTGT
1 TTTATAATTTGT
955858 TTATATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (13 bp):
TTTATAATTTGTG
Found at i:961670 original size:2 final size:2
Alignment explanation
Indices: 961663--961692 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
961653 TTTATTATTT
*
961663 TA TA TA TA TA TA TA TA TA TA TA TA CA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
961693 AATAGCTCAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:961993 original size:334 final size:334
Alignment explanation
Indices: 961384--962051 Score: 1309
Period size: 334 Copynumber: 2.0 Consensus size: 334
961374 CTATACGACG
961384 CCGTTTTGGGGACACTGATTCAGGCCCCAAACGACGCCGTTTCATGCCTATAAAAAACCAACATT
1 CCGTTTTGGGGACACTGATTCAGGCCCCAAACGACGCCGTTTCATGCCTATAAAAAACCAACATT
961449 TTTTTTTTCTAGAACTTTTTTTGCATTTCCTTCAAAACAAAACTGATGAACCCTAGCTTTCTCTG
66 TTTTTTTTCTAGAACTTTTTTTGCATTTCCTTCAAAACAAAACTGATGAACCCTAGCTTTCTCTG
961514 CTAGGGTTCCAAATTTTAGCCGCCGCCGCCGCCGTCGCTCTAAACCCCGATTTCGGCCTGGCCTC
131 CTAGGGTTCCAAATTTTAGCCGCCGCCGCCGCCGTCGCTCTAAACCCCGATTTCGGCCTGGCCTC
961579 CGAGTGCGATGGAGGAATAAGCGTCGGCCTTCAGGTAAGCGTTCCTTCCTTTTTTAATACTATAC
196 CGAGTGCGATGGAGGAATAAGCGTCGGCCTTCAGGTAAGCGTTCCTTCCTTTTTTAATACTATAC
*
961644 TTTTATTATTTTATTATTTTATATATATATATATATATATATACATATAAATAGCTCATAAGAAA
261 TTTTATTATTTTATTATTTTATATATATATATATATATATATACATATAAATAGCTAATAAGAAA
961709 AGAAACAGA
326 AGAAACAGA
961718 CCGTTTTGGGGACACTGATTCAGGCCCCAAACGACGCCGTTTCATGCCTATAAAAAACCAACATT
1 CCGTTTTGGGGACACTGATTCAGGCCCCAAACGACGCCGTTTCATGCCTATAAAAAACCAACATT
961783 TTTTTTTTCTAGAACTTTTTTTGCATTTCCTTCAAAACAAAACTGATGAACCCTAGCTTTCTCTG
66 TTTTTTTTCTAGAACTTTTTTTGCATTTCCTTCAAAACAAAACTGATGAACCCTAGCTTTCTCTG
961848 CTAGGGTTCCAAATTTTAGCCGCCGCCGCCGCCGTCGCTCTAAACCCCGATTTCGGCCTGGCCTC
131 CTAGGGTTCCAAATTTTAGCCGCCGCCGCCGCCGTCGCTCTAAACCCCGATTTCGGCCTGGCCTC
961913 CGAGTGCGATGGAGGAATAAGCGTCGGCCTTCAGGTAAGCGTTCCTTCCTTTTTTAATACTATAC
196 CGAGTGCGATGGAGGAATAAGCGTCGGCCTTCAGGTAAGCGTTCCTTCCTTTTTTAATACTATAC
* *
961978 TTTTATTATTTTATTATTTTATATATATATATATATATATATGCATATAAATGGCTAATAAGAAA
261 TTTTATTATTTTATTATTTTATATATATATATATATATATATACATATAAATAGCTAATAAGAAA
962043 AGAAACAGA
326 AGAAACAGA
962052 TTCGGGGGAA
Statistics
Matches: 331, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
334 331 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (334 bp):
CCGTTTTGGGGACACTGATTCAGGCCCCAAACGACGCCGTTTCATGCCTATAAAAAACCAACATT
TTTTTTTTCTAGAACTTTTTTTGCATTTCCTTCAAAACAAAACTGATGAACCCTAGCTTTCTCTG
CTAGGGTTCCAAATTTTAGCCGCCGCCGCCGCCGTCGCTCTAAACCCCGATTTCGGCCTGGCCTC
CGAGTGCGATGGAGGAATAAGCGTCGGCCTTCAGGTAAGCGTTCCTTCCTTTTTTAATACTATAC
TTTTATTATTTTATTATTTTATATATATATATATATATATATACATATAAATAGCTAATAAGAAA
AGAAACAGA
Found at i:962921 original size:30 final size:30
Alignment explanation
Indices: 962885--962944 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
962875 TCTAAAAATT
962885 TAATATTTTGATTGATATTTTCATTAAAAA
1 TAATATTTTGATTGATATTTTCATTAAAAA
962915 TAATATTTTGATTGATATTTTCATTAAAAA
1 TAATATTTTGATTGATATTTTCATTAAAAA
962945 AGAATGATGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.40, C:0.03, G:0.07, T:0.50
Consensus pattern (30 bp):
TAATATTTTGATTGATATTTTCATTAAAAA
Found at i:968388 original size:89 final size:89
Alignment explanation
Indices: 968289--968455 Score: 255
Period size: 89 Copynumber: 1.9 Consensus size: 89
968279 ATCTATCGGC
* * * *
968289 AACTTGCATTGCATCCTGCTTCACTAATTATTTGAAATT-CTTGAGTATGTTAATATTGTGGTTA
1 AACTTGCATTGCATCCTGCTTCACCAACTATTTGAAATTGCTTAAG-ATGTCAATATTGTGGTTA
968353 ATTACTAAAATGTAATGTTGTGGGT
65 ATTACTAAAATGTAATGTTGTGGGT
* *
968378 AACTTGCATTGCATCCTGCTTCACCAACTATTTGAAATTGTTTAAGATGTCAATGTTGTGGTTAA
1 AACTTGCATTGCATCCTGCTTCACCAACTATTTGAAATTGCTTAAGATGTCAATATTGTGGTTAA
*
968443 TTACTAAATTGTA
66 TTACTAAAATGTA
968456 GTCTGGTTTT
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
89 66 0.94
90 4 0.06
ACGTcount: A:0.29, C:0.13, G:0.17, T:0.41
Consensus pattern (89 bp):
AACTTGCATTGCATCCTGCTTCACCAACTATTTGAAATTGCTTAAGATGTCAATATTGTGGTTAA
TTACTAAAATGTAATGTTGTGGGT
Found at i:979266 original size:124 final size:124
Alignment explanation
Indices: 979044--979322 Score: 384
Period size: 124 Copynumber: 2.2 Consensus size: 124
979034 NNNNNNNNNN
979044 CGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCGA
1 CGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCGA
* * * **
979109 AATCGCGTCCACGAGGGCGCGATTTCACAATTTCTGCCCAATATAGCATCCTTGTATCAG
66 AATCGCGTCCACGAGGCCACGATTTCACAATTTCTGCCCAA-ATAGCATCCTAGTAGAAG
* * *
979169 CGATTTTATACTATTTGCTCAGAAAACGTC-AAAAAAATTATTTCTTACATGACC-ACTGTAGCG
1 CGATTTGACACTATTTGCTCAG-AAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCG
* * *
979232 AAATCGCGTCCACGAGGCCACGATTTCATAATTTCTTCTCAAATAGCATCCTAGTAGAAG
65 AAATCGCGTCCACGAGGCCACGATTTCACAATTTCTGCCCAAATAGCATCCTAGTAGAAG
** *
979292 CGATTTCCCACTATTTGAC-CAGATACGTCAA
1 CGATTTGACACTATTTG-CTCAGAAACGTCAA
979323 TTCGAAATTT
Statistics
Matches: 136, Mismatches: 15, Indels: 8
0.86 0.09 0.05
Matches are distributed among these distances:
122 6 0.04
123 33 0.24
124 47 0.35
125 43 0.32
126 7 0.05
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29
Consensus pattern (124 bp):
CGATTTGACACTATTTGCTCAGAAACGTCAAAAAAAATTATTTCCTACATGACCAACTGTAGCGA
AATCGCGTCCACGAGGCCACGATTTCACAATTTCTGCCCAAATAGCATCCTAGTAGAAG
Found at i:994758 original size:17 final size:18
Alignment explanation
Indices: 994735--994778 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
994725 AAAGGCAAAA
994735 AGGTTGTTTGTTGTAAAT
1 AGGTTGTTTGTTGTAAAT
*
994753 -GGTTGTTCGTTGTAAAT
1 AGGTTGTTTGTTGTAAAT
994770 AGG-TGTTTG
1 AGGTTGTTTG
994779 AAAAGAAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
17 21 0.91
18 2 0.09
ACGTcount: A:0.18, C:0.02, G:0.32, T:0.48
Consensus pattern (18 bp):
AGGTTGTTTGTTGTAAAT
Found at i:996238 original size:45 final size:47
Alignment explanation
Indices: 996185--996292 Score: 132
Period size: 49 Copynumber: 2.3 Consensus size: 47
996175 TCCATATATA
* *
996185 ACTACACTTCCTTTATTT-TATT-TTAGAATAAGGTTTTTGAACCTT
1 ACTACACTTCCTTTATTTATATTATTAGAATAAGGTGTTTCAACCTT
* * *
996230 ATTACACTTCATCTATTTGATATTGATTAGAATAAGGTGTTTCAACCTT
1 ACTACACTTCCTTTATTT-ATATT-ATTAGAATAAGGTGTTTCAACCTT
996279 ACTACAC-TCCTTTA
1 ACTACACTTCCTTTA
996293 ATTAGAATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
45 15 0.29
47 4 0.08
48 5 0.10
49 27 0.53
ACGTcount: A:0.29, C:0.18, G:0.09, T:0.44
Consensus pattern (47 bp):
ACTACACTTCCTTTATTTATATTATTAGAATAAGGTGTTTCAACCTT
Found at i:1005541 original size:2 final size:2
Alignment explanation
Indices: 1005534--1005563 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
1005524 AATTAAAGTG
1005534 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT
1005564 ATATATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
CT
Found at i:1005836 original size:189 final size:191
Alignment explanation
Indices: 1005470--1005850 Score: 748
Period size: 189 Copynumber: 2.0 Consensus size: 191
1005460 CTAACCAAGT
1005470 CACACACATGATTATTATAGTATAATTCACTCACAAAATGTCCCTCACTAAACAAATTAAAGTGC
1 CACACACATGATTATTATAGTATAATTCACTCACAAAATGTCCCTCACTAAACAAATTAAAGTGC
1005535 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAACATATACAAGTCCC
66 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAACATATACAAGTCCC
1005600 CCCATATACAAGTGAATGAGACTTGCTTACATACTAAATCTATTACAATCCATTATCCCTC
131 CCCATATACAAGTGAATGAGACTTGCTTACATACTAAATCTATTACAATCCATTATCCCTC
1005661 CACACACATGATTATTATAGTATAATTCACTCACAAAATGTCCCTCACTAAACAAATTAAAGTGC
1 CACACACATGATTATTATAGTATAATTCACTCACAAAATGTCCCTCACTAAACAAATTAAAGTGC
1005726 TCTCTCTCT-TCTCTCTCTC-CTCTCTCTATATATATATATATATATATAACATATACAAGTCCC
66 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAACATATACAAGTCCC
1005789 CCCATATACAAGTGAATGAGACTTGCTTACATACTAAATCTATTACAATCCATTATCCCTC
131 CCCATATACAAGTGAATGAGACTTGCTTACATACTAAATCTATTACAATCCATTATCCCTC
1005850 C
1 C
1005851 TAAAACGCAA
Statistics
Matches: 190, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
189 106 0.56
190 10 0.05
191 74 0.39
ACGTcount: A:0.34, C:0.26, G:0.06, T:0.34
Consensus pattern (191 bp):
CACACACATGATTATTATAGTATAATTCACTCACAAAATGTCCCTCACTAAACAAATTAAAGTGC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATAACATATACAAGTCCC
CCCATATACAAGTGAATGAGACTTGCTTACATACTAAATCTATTACAATCCATTATCCCTC
Found at i:1007369 original size:13 final size:13
Alignment explanation
Indices: 1007353--1007405 Score: 79
Period size: 13 Copynumber: 4.1 Consensus size: 13
1007343 TTTAAACCAA
1007353 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
* *
1007366 ACTTTTCCACAGC
1 ACTTTTCAAAAGC
*
1007379 ACTTTTCAAAAAC
1 ACTTTTCAAAAGC
1007392 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
1007405 A
1 A
1007406 TCGCCAAACT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 34 1.00
ACGTcount: A:0.38, C:0.26, G:0.06, T:0.30
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Done.