Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 31 of 163
Found at i:9781698 original size:6 final size:6
Alignment explanation
Indices: 9781676--9781716 Score: 64
Period size: 6 Copynumber: 6.5 Consensus size: 6
9781666 TTCCAAATGA
9781676 TTTCAT TTCTCCAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
1 TTTCAT TT-T-CAT TTTCAT TTTCAT TTTCAT TTTCAT TTT
9781717 GGAGAAAATT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
6 26 0.79
7 2 0.06
8 5 0.15
ACGTcount: A:0.15, C:0.20, G:0.00, T:0.66
Consensus pattern (6 bp):
TTTCAT
Found at i:9784820 original size:21 final size:20
Alignment explanation
Indices: 9784762--9784822 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 20
9784752 ATTATTGTTG
*
9784762 AATTGCACATACGTGCCTCT
1 AATTGCACATACGTGCCCCT
* * *
9784782 ATTTGTAC-TTCAGTGCCCCT
1 AATTGCACATAC-GTGCCCCT
9784802 AAATTGCACATACGTGCCCCT
1 -AATTGCACATACGTGCCCCT
9784823 GTTTGTACTT
Statistics
Matches: 31, Mismatches: 7, Indels: 5
0.72 0.16 0.12
Matches are distributed among these distances:
19 2 0.06
20 13 0.42
21 14 0.45
22 2 0.06
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.31
Consensus pattern (20 bp):
AATTGCACATACGTGCCCCT
Found at i:9784887 original size:41 final size:41
Alignment explanation
Indices: 9784760--9784891 Score: 176
Period size: 41 Copynumber: 3.2 Consensus size: 41
9784750 AGATTATTGT
* * *
9784760 TGAATTGCACATACGTGCCTCTATTTGTACTTCAGTGCCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* *
9784801 TAAATTGCACATACGTGCCCCTGTTTGTACTTCAGCACCCC
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
* * * *
9784842 TGAATTACACATACGTGCCCCTGTTTGTACTTCGGTAACCA
1 TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
9784883 TGAA-TGCAC
1 TGAATTGCAC
9784892 TTTTGTGCCC
Statistics
Matches: 79, Mismatches: 12, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
40 4 0.05
41 75 0.95
ACGTcount: A:0.23, C:0.30, G:0.17, T:0.31
Consensus pattern (41 bp):
TGAATTGCACATACGTGCCCCTGTTTGTACTTCAGTACCCC
Found at i:9785032 original size:12 final size:12
Alignment explanation
Indices: 9785012--9785044 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
9785002 TTATTCGTTC
*
9785012 TTGTGGATTGTT
1 TTGTAGATTGTT
9785024 TTGTAGATTGTT
1 TTGTAGATTGTT
9785036 TTGTAGATT
1 TTGTAGATT
9785045 ATCGTTACTG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.27, T:0.58
Consensus pattern (12 bp):
TTGTAGATTGTT
Found at i:9793599 original size:48 final size:48
Alignment explanation
Indices: 9793528--9793692 Score: 323
Period size: 48 Copynumber: 3.5 Consensus size: 48
9793518 GAGTGGAAGA
9793528 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
1 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
9793576 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
1 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
9793624 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
1 TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
9793672 TGTTCGACTCAAGAAG-GAAAG
1 TGTTCGACTCAAGAAGCGAAAG
9793693 ATTTGGGTAT
Statistics
Matches: 117, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
47 5 0.04
48 112 0.96
ACGTcount: A:0.38, C:0.13, G:0.27, T:0.22
Consensus pattern (48 bp):
TGTTCGACTCAAGAAGCGAAAGGAAGCGGATTAGGATCAAATTTAAGT
Found at i:9793795 original size:16 final size:16
Alignment explanation
Indices: 9793776--9793825 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
9793766 AAGAACTAAG
9793776 AATAAATATTTAAAAT
1 AATAAATATTTAAAAT
*
9793792 AATAAATA---AATA-
1 AATAAATATTTAAAAT
9793804 AATAAATATTTAAAAT
1 AATAAATATTTAAAAT
9793820 AATAAA
1 AATAAA
9793826 GAACCGATGG
Statistics
Matches: 28, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
12 8 0.29
13 3 0.11
15 3 0.11
16 14 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
AATAAATATTTAAAAT
Found at i:9794572 original size:13 final size:13
Alignment explanation
Indices: 9794554--9794579 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9794544 CACCTTACAC
9794554 TTTACTATTTGGA
1 TTTACTATTTGGA
9794567 TTTACTATTTGGA
1 TTTACTATTTGGA
9794580 GTTGTGCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.08, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTACTATTTGGA
Found at i:9797251 original size:15 final size:15
Alignment explanation
Indices: 9797226--9797260 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9797216 AACTCTATTT
*
9797226 TAATT-ATATTAGGA
1 TAATTAATATTAAGA
9797240 TAATTAATATTAAGA
1 TAATTAATATTAAGA
9797255 TAATTA
1 TAATTA
9797261 TTAAGGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.26
15 14 0.74
ACGTcount: A:0.49, C:0.00, G:0.09, T:0.43
Consensus pattern (15 bp):
TAATTAATATTAAGA
Found at i:9797303 original size:10 final size:10
Alignment explanation
Indices: 9797285--9797332 Score: 53
Period size: 10 Copynumber: 4.9 Consensus size: 10
9797275 ATTTTAGGAT
9797285 TTTAT-TTTA
1 TTTATCTTTA
9797294 TTTATCTTTA
1 TTTATCTTTA
9797304 TTTATCTTTA
1 TTTATCTTTA
* ** *
9797314 ATTAAATGTA
1 TTTATCTTTA
9797324 TTTATCTTT
1 TTTATCTTT
9797333 TAGGAATTTA
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
9 5 0.17
10 25 0.83
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.67
Consensus pattern (10 bp):
TTTATCTTTA
Found at i:9802633 original size:18 final size:17
Alignment explanation
Indices: 9802612--9802649 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 17
9802602 TCTCGGTAAC
9802612 AAGT-AAAAAGAAAAGCAA
1 AAGTGAAAAA-AAAAG-AA
9802630 AAGTGAAAAAAAAAGAA
1 AAGTGAAAAAAAAAGAA
9802647 AAG
1 AAG
9802650 AAGAAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 5 0.26
18 9 0.47
19 5 0.26
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (17 bp):
AAGTGAAAAAAAAAGAA
Found at i:9802655 original size:18 final size:19
Alignment explanation
Indices: 9802616--9802657 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
9802606 GGTAACAAGT
*
9802616 AAAAAGAAAAGCAAAAGTG
1 AAAAAGAAAAGCAAAAGAG
9802635 AAAAA-AAAAG-AAAAGAAG
1 AAAAAGAAAAGCAAAAG-AG
9802653 AAAAA
1 AAAAA
9802658 TAGTAACCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.79, C:0.02, G:0.17, T:0.02
Consensus pattern (19 bp):
AAAAAGAAAAGCAAAAGAG
Found at i:9813650 original size:11 final size:11
Alignment explanation
Indices: 9813628--9813727 Score: 68
Period size: 11 Copynumber: 9.4 Consensus size: 11
9813618 AACTAATCCT
9813628 CTCTCAAATTTC
1 CTCTC-AATTTC
9813640 CTCTCAATTTC
1 CTCTCAATTTC
*
9813651 CTCTCAATTTG
1 CTCTCAATTTC
*
9813662 CTCTCAAATTC
1 CTCTCAATTTC
9813673 CT-TCCAAATTT-
1 CTCT-C-AATTTC
*
9813684 CTCTCAA-ATC
1 CTCTCAATTTC
* *
9813694 C-AT--ATTTA
1 CTCTCAATTTC
* *
9813702 ATCTCAATTTG
1 CTCTCAATTTC
9813713 CTCTCAATTTC
1 CTCTCAATTTC
9813724 CTCT
1 CTCT
9813728 TAAATTTCTC
Statistics
Matches: 67, Mismatches: 13, Indels: 17
0.69 0.13 0.18
Matches are distributed among these distances:
7 1 0.01
8 1 0.01
9 3 0.04
10 4 0.06
11 48 0.72
12 10 0.15
ACGTcount: A:0.24, C:0.31, G:0.02, T:0.43
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:9813665 original size:22 final size:22
Alignment explanation
Indices: 9813628--9813692 Score: 80
Period size: 22 Copynumber: 2.9 Consensus size: 22
9813618 AACTAATCCT
*
9813628 CTCTCAAATTTCCTCTCAATTTC
1 CTCTCAAATTT-CTCTCAAATTC
9813651 CTCTC-AATTTGCTCTCAAATTC
1 CTCTCAAATTT-CTCTCAAATTC
9813673 CT-TCCAAATTTCTCTCAAAT
1 CTCT-CAAATTTCTCTCAAAT
9813693 CCATATTTAA
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
21 1 0.03
22 27 0.71
23 10 0.26
ACGTcount: A:0.25, C:0.32, G:0.02, T:0.42
Consensus pattern (22 bp):
CTCTCAAATTTCTCTCAAATTC
Found at i:9813712 original size:51 final size:51
Alignment explanation
Indices: 9813652--9813751 Score: 148
Period size: 51 Copynumber: 2.0 Consensus size: 51
9813642 CTCAATTTCC
9813652 TCTCAATTTGCTCTCAAATTCCT-TCCAAATTTCTCTCAAATCCATATTTAA
1 TCTCAATTTGCTCTCAAATTCCTCT-CAAATTTCTCTCAAATCCATATTTAA
* * * *
9813703 TCTCAATTTGCTCTCAATTTCCTCTTAAATTTCTCTTAAATCCCTATTT
1 TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTT
9813752 TTAAATAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
51 43 0.98
52 1 0.02
ACGTcount: A:0.26, C:0.27, G:0.02, T:0.45
Consensus pattern (51 bp):
TCTCAATTTGCTCTCAAATTCCTCTCAAATTTCTCTCAAATCCATATTTAA
Found at i:9819413 original size:127 final size:124
Alignment explanation
Indices: 9819146--9819590 Score: 586
Period size: 125 Copynumber: 3.5 Consensus size: 124
9819136 TAGCCTCAGC
* * * * *
9819146 CCTACTGTAGCAAAAGTGCGTCCACGTGGGCACGATTTCACAAATTCTTATGATAAAGCATCTTG
1 CCTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
* * * * * * *
9819211 CTTGAAGCATTTTTATACTATTTGCTCAGAAACATCAAGTTGAATTTCTTTTTTCTAGGA
66 CTTGAAGCTTTTTTATACTATTTACTCAGAAACGTCAAGTCGAAATT-ATTTTTCCAGGA
* *
9819271 CCTACTGTAGGAAAAGCGCATCCACGAT-GGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
1 CCTACTGTAGCAAAAGCGCGTCCACG-TGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCT
* *
9819335 ACTTGAAGCGTTTTTTTAAACTATTTACTCAGAAACGTCAAGTCGAAATTATTTCTTCCAGGA
65 GCTTGAAGC--TTTTTTATACTATTTACTCAGAAACGTCAAGTCGAAATTATTT-TTCCAGGA
* ** *
9819398 CCTACTGTAGCAAAAGTGCGTCCACAAGGGCGCGATTTCACAAATTCTTCTCATAAACCATCCTG
1 CCTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
* *
9819463 CTTGAAGCATTTTTTATACTATTTACTCAGAAACGTCAACTCGAAATTATTTTTACAGGA
66 CTTGAAGC-TTTTTTATACTATTTACTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGA
* * * * *
9819523 CCTACTATAGCAAAAGCGCGTACACGTGGGCGCGACTTCAGAAATTCTTCTGATAAAGCATCCTG
1 CCTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
9819588 CTT
66 CTT
9819591 TGATTTTATC
Statistics
Matches: 279, Mismatches: 36, Indels: 10
0.86 0.11 0.03
Matches are distributed among these distances:
125 129 0.46
126 45 0.16
127 105 0.38
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.31
Consensus pattern (124 bp):
CCTACTGTAGCAAAAGCGCGTCCACGTGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTG
CTTGAAGCTTTTTTATACTATTTACTCAGAAACGTCAAGTCGAAATTATTTTTCCAGGA
Found at i:9820336 original size:11 final size:11
Alignment explanation
Indices: 9820314--9820364 Score: 77
Period size: 11 Copynumber: 4.6 Consensus size: 11
9820304 AACTAATCCT
9820314 CTCTCAAATTTC
1 CTCTC-AATTTC
*
9820326 TTCTCAATTTC
1 CTCTCAATTTC
9820337 CTCTCAATTTC
1 CTCTCAATTTC
9820348 CTCTCAATTTC
1 CTCTCAATTTC
9820359 CT-TCAA
1 CTCTCAA
9820365 AAATTCTCTG
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
10 4 0.11
11 29 0.78
12 4 0.11
ACGTcount: A:0.22, C:0.33, G:0.00, T:0.45
Consensus pattern (11 bp):
CTCTCAATTTC
Found at i:9820460 original size:11 final size:11
Alignment explanation
Indices: 9820433--9820476 Score: 54
Period size: 11 Copynumber: 3.9 Consensus size: 11
9820423 CTTAACTCCC
9820433 TTTTTTT-AAA
1 TTTTTTTAAAA
*
9820443 TAATTTTTAAAA
1 T-TTTTTTAAAA
9820455 TTTTTTTTAAAA
1 -TTTTTTTAAAA
9820467 TTTTTTTAAA
1 TTTTTTTAAA
9820477 CCGTAAAAAT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
10 1 0.03
11 15 0.52
12 12 0.41
13 1 0.03
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTTTTTTAAAA
Found at i:9821483 original size:7 final size:7
Alignment explanation
Indices: 9821471--9821501 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
9821461 AGTCGATTGA
9821471 TATTTAG
1 TATTTAG
9821478 TATTTAG
1 TATTTAG
9821485 TATTTAG
1 TATTTAG
*
9821492 TATTAAG
1 TATTTAG
9821499 TAT
1 TAT
9821502 ATAAATAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.32, C:0.00, G:0.13, T:0.55
Consensus pattern (7 bp):
TATTTAG
Found at i:9822172 original size:18 final size:18
Alignment explanation
Indices: 9822145--9822184 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
9822135 CAGGTGCGTT
*
9822145 TCCTACCCCTTATATGTA
1 TCCTAACCCTTATATGTA
9822163 TCCTAACCCTTATATGTA
1 TCCTAACCCTTATATGTA
9822181 TCCT
1 TCCT
9822185 TTTCCGAGTC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.33, G:0.05, T:0.40
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:9822641 original size:25 final size:25
Alignment explanation
Indices: 9822613--9822660 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
9822603 TATTTTGATA
9822613 TTATTTGATGTAATAAAATAGAAGT
1 TTATTTGATGTAATAAAATAGAAGT
*
9822638 TTATTTGATGTAATAAAGTAGAA
1 TTATTTGATGTAATAAAATAGAA
9822661 ATTTTTGAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.17, T:0.40
Consensus pattern (25 bp):
TTATTTGATGTAATAAAATAGAAGT
Found at i:9822742 original size:23 final size:23
Alignment explanation
Indices: 9822712--9823177 Score: 716
Period size: 23 Copynumber: 20.6 Consensus size: 23
9822702 ATTAATACCC
*
9822712 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9822735 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822758 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822781 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822804 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822827 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822850 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9822873 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9822896 TTAAATTAAAAACCCTAACC--C
1 TTAAATTAAAAACCCTAACCTAA
*
9822917 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9822940 TTAACA-TAAAAACTCTAACCTAA
1 TTAA-ATTAAAAACCCTAACCTAA
*
9822963 TTAAATTAAAAACCCTAACC--C
1 TTAAATTAAAAACCCTAACCTAA
*
9822984 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9823007 TTAAATTAAAAACCCTAACC--C
1 TTAAATTAAAAACCCTAACCTAA
*
9823028 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
9823051 TTAAATTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9823074 TTAAATTAAAAACCCTAA-CT-C
1 TTAAATTAAAAACCCTAACCTAA
* *
9823095 TTAACTTAAAAACCCTGACCTAA
1 TTAAATTAAAAACCCTAACCTAA
* *
9823118 TTAAATTAAAAACTCTGACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9823141 TTAACTTAAAAACCCTAACCTAA
1 TTAAATTAAAAACCCTAACCTAA
*
9823164 TTAACTTAAAAACC
1 TTAAATTAAAAACC
9823178 ATTAAATACA
Statistics
Matches: 409, Mismatches: 24, Indels: 20
0.90 0.05 0.04
Matches are distributed among these distances:
21 73 0.18
22 5 0.01
23 331 0.81
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (23 bp):
TTAAATTAAAAACCCTAACCTAA
Found at i:9822963 original size:67 final size:68
Alignment explanation
Indices: 9822712--9823177 Score: 694
Period size: 67 Copynumber: 6.9 Consensus size: 68
9822702 ATTAATACCC
* *
9822712 TTAACTTAAAAACCCTAACCTAATTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
9822777 CTAA
66 C-AA
9822781 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
9822846 CTAA
66 C-AA
9822850 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
*
9822915 C-C
66 CAA
* *
9822917 TTAACTTAAAAACCCTAACCTAATTAACA-TAAAAACTCTAACCTAATTAAATTAAAAACCCTAA
1 TTAAATTAAAAACCCTAACCTAATTAA-ATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA
*
9822981 CC-C
65 CCAA
* * *
9822984 TTAACTTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACC--CTTAACTTAAAAACCCTAAC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
9823047 CTAA
66 C-AA
* * *
9823051 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAA-CT-CTTAACTTAAAAACCCTGAC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
9823114 CTAA
66 C-AA
* * * *
9823118 TTAAATTAAAAACTCTGACCTAATTAACTTAAAAACCCTAACCTAATTAACTTAAAAACC
1 TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACC
9823178 ATTAAATACA
Statistics
Matches: 375, Mismatches: 15, Indels: 14
0.93 0.04 0.03
Matches are distributed among these distances:
65 19 0.05
66 2 0.01
67 204 0.54
68 3 0.01
69 147 0.39
ACGTcount: A:0.49, C:0.24, G:0.00, T:0.26
Consensus pattern (68 bp):
TTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAACCTAATTAAATTAAAAACCCTAAC
CAA
Found at i:9825157 original size:21 final size:21
Alignment explanation
Indices: 9825133--9825175 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9825123 ATAAAACTAT
9825133 CCTTATTGGTAAACTGATTAC
1 CCTTATTGGTAAACTGATTAC
*
9825154 CCTTGTTGGTAAACTGATTAC
1 CCTTATTGGTAAACTGATTAC
9825175 C
1 C
9825176 AACTTCAAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (21 bp):
CCTTATTGGTAAACTGATTAC
Found at i:9826431 original size:124 final size:123
Alignment explanation
Indices: 9826211--9826587 Score: 576
Period size: 124 Copynumber: 3.0 Consensus size: 123
9826201 CCCAAGCATG
* * *
9826211 CTACTGTAGCAAAAGCGCGTCCACGAGGGTACGATTTTCACAAATTCTTCTCGAATAGCATCCTC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCAT-CTG
*
9826276 CTAGAAGCGATTTTATACTATTTGCTCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
65 CTAGAAGCGATTTTATACTATTTGATCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
9826335 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCTAG
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCT-G
* *
9826400 CTAGAAGCGATTTTATACTATTTGGTTAGAAACGTCAAAAAAAAATTATTTCTTCCATGAC
65 CTAGAAGCGATTTTATACTATTTGATCAGAAACGTC--AAAAAAATTATTTCTTCCATGAC
* * *
9826461 CTACTGTAGCAAAAGCACGTCCACTAGGGCGCGA-TTTCACAAATTCTTCTCAAATAGCATCTGC
1 CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCTGC
* ** *
9826525 TAGAAGCGATTTTATACTATATGATCAGAAACGTCAACTCGAAATTATTTCTTCCAGGAC
66 TAGAAGCGATTTTATACTATTTGATCAGAAACGTCAA--AAAAATTATTTCTTCCATGAC
9826585 CTA
1 CTA
9826588 AAAATCCTAA
Statistics
Matches: 234, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
122 2 0.01
123 2 0.01
124 148 0.63
125 28 0.12
126 54 0.23
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.29
Consensus pattern (123 bp):
CTACTGTAGCAAAAGCGCGTCCACGAGGGTGCGATTTTCACAAATTCTTCTCAAATAGCATCTGC
TAGAAGCGATTTTATACTATTTGATCAGAAACGTCAAAAAAATTATTTCTTCCATGAC
Found at i:9828472 original size:1 final size:1
Alignment explanation
Indices: 9828466--9828494 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
9828456 CACGGTTTAC
9828466 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTT
9828495 GTTTAATTTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:9834933 original size:150 final size:151
Alignment explanation
Indices: 9834651--9834951 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 151
9834641 TGCAATAACC
9834651 CAACAAATATGCACTAGAACAATTAGATAAAATTAAATATGATGCTTATTTTTCTCGTTATTGTT
1 CAACAAATATGCACTAGAACAATTAGATAAAATTAAATATGATGCTTATTTTTCTCGTTATTGTT
9834716 GTCAACAACATTTTTAGACTAATAATTTTTGTTACTTGTTTAGAAATTATCTTTATCATACTAAT
66 GTCAACAACATTTTTAGACTAATAATTTTTGTTACTTGTTTAGAAATTATCTTTATCATACTAAT
9834781 AATTTTTTATAATAATTAATA
131 AATTTTTTATAATAATTAATA
9834802 CAACAAATAT-CACTAGAACAATTAGATAAAATTAAATATGATGCTTATTTTTCTCGTTATTGTT
1 CAACAAATATGCACTAGAACAATTAGATAAAATTAAATATGATGCTTATTTTTCTCGTTATTGTT
9834866 GTCAACAACATTTTTAGACTAATAATTTTTGTTACTTGTTTAGAAATTATCTTTATCATACTAAT
66 GTCAACAACATTTTTAGACTAATAATTTTTGTTACTTGTTTAGAAATTATCTTTATCATACTAAT
9834931 AATTTTTTATAATAATTAATA
131 AATTTTTTATAATAATTAATA
9834952 TTTTAAAAAA
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
150 140 0.93
151 10 0.07
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.44
Consensus pattern (151 bp):
CAACAAATATGCACTAGAACAATTAGATAAAATTAAATATGATGCTTATTTTTCTCGTTATTGTT
GTCAACAACATTTTTAGACTAATAATTTTTGTTACTTGTTTAGAAATTATCTTTATCATACTAAT
AATTTTTTATAATAATTAATA
Found at i:9836064 original size:22 final size:20
Alignment explanation
Indices: 9836013--9836073 Score: 59
Period size: 22 Copynumber: 2.9 Consensus size: 20
9836003 AAATATATTT
*
9836013 AATAATTTTAAAATTTTTTA
1 AATAATTTTAAAATTTTTAA
* *
9836033 ATTGAGTTTTAAAAATTTCTTAA
1 AAT-AATTTT-AAAATTT-TTAA
9836056 AATAATTTTTAAAATTTT
1 AATAA-TTTTAAAATTTT
9836074 CATNNNNNNN
Statistics
Matches: 32, Mismatches: 5, Indels: 7
0.73 0.11 0.16
Matches are distributed among these distances:
20 2 0.06
21 6 0.19
22 15 0.47
23 9 0.28
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (20 bp):
AATAATTTTAAAATTTTTAA
Found at i:9839806 original size:30 final size:30
Alignment explanation
Indices: 9839770--9839829 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
9839760 TAGTATTTTA
*
9839770 ACGATTTTGAATTT-AAAAAAAATTATATAT
1 ACGATTTTAAATTTAAAAAAAAATTA-ATAT
9839800 ACGATTTTAAATTTAAAAAAAAATTAATAT
1 ACGATTTTAAATTTAAAAAAAAATTAATAT
9839830 TTTCAATATC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 17 0.61
31 11 0.39
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.38
Consensus pattern (30 bp):
ACGATTTTAAATTTAAAAAAAAATTAATAT
Found at i:9849985 original size:282 final size:283
Alignment explanation
Indices: 9849470--9850034 Score: 1123
Period size: 282 Copynumber: 2.0 Consensus size: 283
9849460 CAAATTCATA
9849470 CATTTATTTTAATTATGTTCTCTATTATTGTACAACGAATTTGTACATGTATTGTTTTATTATTT
1 CATTTATTTTAATTATGTTCTCTATTATTGTACAACGAATTTGTACATGTATTGTTTTATTATTT
9849535 AACTATCAAATTAATAACTCAATAATTAATATAATTATCGTGACAGTTAAATTTAATACCAACTG
66 AACTATCAAATTAATAACTCAATAATTAATATAATTATCGTGACAGTTAAATTTAATACCAACTG
9849600 TGTTTAGATTCTGTTCGTTTCAACCATAAGGTGTGACCTTGTAGGCTATTGTAACATTGGTAGTA
131 TGTTTAGATTCTGTTCGTTTCAACCATAAGGTGTGACCTTGTAGGCTATTGTAACATTGGTAGTA
9849665 ATACTAGAACACTTCTAACATTACAAGCAATGAGTGACATCTAGCAATGCATCATCGCTACCCAA
196 ATACTAGAACACTTCTAACATTACAAGCAATGAGTGACATCTAGCAATGCATCATCGCTACCCAA
9849730 GTTACAAGAAGTCGTGGTTCAAC
261 GTTACAAGAAGTCGTGGTTCAAC
9849753 CATTTATTTT-ATTATGTTCTCTATTATTGTACAACGAATTTGTACATGTATTGTTTTATTATTT
1 CATTTATTTTAATTATGTTCTCTATTATTGTACAACGAATTTGTACATGTATTGTTTTATTATTT
9849817 AACTATCAAATTAATAACTCAATAATTAATATAATTATCGTGACAGTTAAATTTAATACCAACTG
66 AACTATCAAATTAATAACTCAATAATTAATATAATTATCGTGACAGTTAAATTTAATACCAACTG
9849882 TGTTTAGATTCTGTTCGTTTCAACCATAAGGTGTGACCTTGTAGGCTATTGTAACATTGGTAGTA
131 TGTTTAGATTCTGTTCGTTTCAACCATAAGGTGTGACCTTGTAGGCTATTGTAACATTGGTAGTA
9849947 ATACTAGAACACTTCTAACATTACAAGCAATGAGTGACATCTAGCAATGCATCATCGCTACCCAA
196 ATACTAGAACACTTCTAACATTACAAGCAATGAGTGACATCTAGCAATGCATCATCGCTACCCAA
9850012 GTTACAAGAAGTCGTGGTTCAAC
261 GTTACAAGAAGTCGTGGTTCAAC
9850035 ATAACCTTTC
Statistics
Matches: 282, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
282 272 0.96
283 10 0.04
ACGTcount: A:0.33, C:0.16, G:0.14, T:0.37
Consensus pattern (283 bp):
CATTTATTTTAATTATGTTCTCTATTATTGTACAACGAATTTGTACATGTATTGTTTTATTATTT
AACTATCAAATTAATAACTCAATAATTAATATAATTATCGTGACAGTTAAATTTAATACCAACTG
TGTTTAGATTCTGTTCGTTTCAACCATAAGGTGTGACCTTGTAGGCTATTGTAACATTGGTAGTA
ATACTAGAACACTTCTAACATTACAAGCAATGAGTGACATCTAGCAATGCATCATCGCTACCCAA
GTTACAAGAAGTCGTGGTTCAAC
Found at i:9866088 original size:36 final size:36
Alignment explanation
Indices: 9866041--9866113 Score: 146
Period size: 36 Copynumber: 2.0 Consensus size: 36
9866031 TATCCAAATC
9866041 AATGCAATGACGGTTATCGAGTCCTAATTGAACCTT
1 AATGCAATGACGGTTATCGAGTCCTAATTGAACCTT
9866077 AATGCAATGACGGTTATCGAGTCCTAATTGAACCTT
1 AATGCAATGACGGTTATCGAGTCCTAATTGAACCTT
9866113 A
1 A
9866114 GTAATTCATA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (36 bp):
AATGCAATGACGGTTATCGAGTCCTAATTGAACCTT
Found at i:9891349 original size:28 final size:29
Alignment explanation
Indices: 9891309--9891371 Score: 101
Period size: 28 Copynumber: 2.2 Consensus size: 29
9891299 ATGGTGATAA
*
9891309 TGTTTTGTTTTATTAACTAAAC-AAATTT
1 TGTTTTCTTTTATTAACTAAACAAAATTT
9891337 TGTTTTCTTTTATTAACTAAACAAAATTT
1 TGTTTTCTTTTATTAACTAAACAAAATTT
*
9891366 TATTTT
1 TGTTTT
9891372 AACAATTTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.32, C:0.08, G:0.05, T:0.56
Consensus pattern (29 bp):
TGTTTTCTTTTATTAACTAAACAAAATTT
Found at i:9894621 original size:15 final size:14
Alignment explanation
Indices: 9894596--9894631 Score: 63
Period size: 15 Copynumber: 2.5 Consensus size: 14
9894586 ATATTTGTAT
9894596 TATTTTTAATTTAA
1 TATTTTTAATTTAA
9894610 TATTTATTAATTTAA
1 TATTT-TTAATTTAA
9894625 TATTTTT
1 TATTTTT
9894632 CTTTCATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
14 7 0.33
15 14 0.67
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
TATTTTTAATTTAA
Found at i:9895908 original size:6 final size:6
Alignment explanation
Indices: 9895897--9895924 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
9895887 TAAATCACTG
9895897 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTT
9895925 GAAAAAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.00, G:0.00, T:0.86
Consensus pattern (6 bp):
TTTTTA
Found at i:9899240 original size:11 final size:11
Alignment explanation
Indices: 9899224--9899251 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
9899214 TTTTGTAAAA
9899224 GAAATTTTGAT
1 GAAATTTTGAT
9899235 GAAATTTTGAT
1 GAAATTTTGAT
9899246 GAAATT
1 GAAATT
9899252 ATCAATTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.39, C:0.00, G:0.18, T:0.43
Consensus pattern (11 bp):
GAAATTTTGAT
Found at i:9912007 original size:38 final size:35
Alignment explanation
Indices: 9911931--9912008 Score: 86
Period size: 38 Copynumber: 2.1 Consensus size: 35
9911921 TTACTGTTGT
* *
9911931 TACTACTATGTTACTAATTGCATGTTCAACATGCC
1 TACTACTATGTTACTAATTGCATGATCAACATGAC
*
9911966 TACTACTATTGTTAAACTGATTGCATGAT-AAGCATGAC
1 TACTACTA-TGTT--ACTAATTGCATGATCAA-CATGAC
9912004 TACTA
1 TACTA
9912009 TTTCTATATT
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
35 8 0.22
36 4 0.11
37 2 0.06
38 22 0.61
ACGTcount: A:0.32, C:0.19, G:0.13, T:0.36
Consensus pattern (35 bp):
TACTACTATGTTACTAATTGCATGATCAACATGAC
Found at i:9932239 original size:64 final size:64
Alignment explanation
Indices: 9932133--9932280 Score: 206
Period size: 64 Copynumber: 2.3 Consensus size: 64
9932123 CGCTGTGTCC
* * * * *
9932133 AAGCCACTCAACATTGCAGTCAAGCTGCATCATTGTGGTCAAGCCACTCAATAATGTTGTGGCA
1 AAGCTACTCAATATTGCAGTCAAGCTACATCATTGTAGTCAAGCCACTCAATAAAGTTGTGGCA
* * * **
9932197 AAGCTACTCAATATCGCAGTCAAGGTACATCGTTGTAGTCAAGCCACTCAATAAAGTTGTGGTT
1 AAGCTACTCAATATTGCAGTCAAGCTACATCATTGTAGTCAAGCCACTCAATAAAGTTGTGGCA
9932261 AAGCTACTCAATATTGCAGT
1 AAGCTACTCAATATTGCAGT
9932281 AAAACTGCCA
Statistics
Matches: 73, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
64 73 1.00
ACGTcount: A:0.31, C:0.22, G:0.20, T:0.27
Consensus pattern (64 bp):
AAGCTACTCAATATTGCAGTCAAGCTACATCATTGTAGTCAAGCCACTCAATAAAGTTGTGGCA
Found at i:9932264 original size:24 final size:24
Alignment explanation
Indices: 9932228--9932273 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
9932218 AAGGTACATC
9932228 GTTGTAGTCAAGCCACTCAATAAA
1 GTTGTAGTCAAGCCACTCAATAAA
* * *
9932252 GTTGTGGTTAAGCTACTCAATA
1 GTTGTAGTCAAGCCACTCAATA
9932274 TTGCAGTAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (24 bp):
GTTGTAGTCAAGCCACTCAATAAA
Found at i:9932473 original size:42 final size:42
Alignment explanation
Indices: 9932364--9932475 Score: 134
Period size: 42 Copynumber: 2.7 Consensus size: 42
9932354 TTTCAATAGG
* * * *
9932364 CATGCTTAACATGCGAATCGAATCTAAGAAAAACATAGTCGG
1 CATGCTTAACATGCAAATCAAATCTCAGAAAAACATAGTCGA
* *** * *
9932406 CATGTTTAACATGCAAATCAAATCTCAGTTTATCATAGTTGA
1 CATGCTTAACATGCAAATCAAATCTCAGAAAAACATAGTCGA
9932448 CATGCTTAACATGCAAATCAAATCTCAG
1 CATGCTTAACATGCAAATCAAATCTCAG
9932476 CTAATAAATC
Statistics
Matches: 59, Mismatches: 11, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (42 bp):
CATGCTTAACATGCAAATCAAATCTCAGAAAAACATAGTCGA
Found at i:9938947 original size:15 final size:16
Alignment explanation
Indices: 9938900--9938951 Score: 70
Period size: 17 Copynumber: 3.2 Consensus size: 16
9938890 TGTAAAATTT
*
9938900 TAGACTTTGAAAACTA
1 TAGACTGTGAAAACTA
9938916 TAGAACTGTGAAAACTA
1 TAG-ACTGTGAAAACTA
*
9938933 TAGATTGTG-AAACTA
1 TAGACTGTGAAAACTA
9938948 TAGA
1 TAGA
9938952 AAACATTAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
15 10 0.30
16 8 0.24
17 15 0.45
ACGTcount: A:0.44, C:0.10, G:0.17, T:0.29
Consensus pattern (16 bp):
TAGACTGTGAAAACTA
Found at i:9950600 original size:19 final size:19
Alignment explanation
Indices: 9950576--9950616 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9950566 ATCTCATTTC
9950576 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTA-ATTA
9950595 ATTCATTTGCATTTAATTA
1 ATTCATTTGCATTTAATTA
9950614 ATT
1 ATT
9950617 TACTGTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAATTA
Found at i:9955193 original size:15 final size:15
Alignment explanation
Indices: 9955170--9955211 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
9955160 TGAAATAAAT
*
9955170 TGATCAAATGTTGAA
1 TGATCAAATGATGAA
* *
9955185 TGATAAAATGATGTA
1 TGATCAAATGATGAA
9955200 TGATCAAATGAT
1 TGATCAAATGAT
9955212 AAGAAGTATG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.43, C:0.05, G:0.19, T:0.33
Consensus pattern (15 bp):
TGATCAAATGATGAA
Found at i:9957273 original size:19 final size:19
Alignment explanation
Indices: 9957249--9957289 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
9957239 ATCTCATTTT
9957249 ATTCA-TTGCATTTAGATTA
1 ATTCATTTGCATTTA-ATTA
9957268 ATTCATTTGCATTTAATTA
1 ATTCATTTGCATTTAATTA
9957287 ATT
1 ATT
9957290 TACTGTAACA
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
19 12 0.57
20 9 0.43
ACGTcount: A:0.32, C:0.10, G:0.07, T:0.51
Consensus pattern (19 bp):
ATTCATTTGCATTTAATTA
Found at i:9960647 original size:12 final size:13
Alignment explanation
Indices: 9960624--9960653 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
9960614 TAAGTGTTGC
9960624 TTTCTTTGTTTTT
1 TTTCTTTGTTTTT
9960637 TTTCTTT-TTTTT
1 TTTCTTTGTTTTT
9960649 TTTCT
1 TTTCT
9960654 GTTGAAGGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 10 0.59
13 7 0.41
ACGTcount: A:0.00, C:0.10, G:0.03, T:0.87
Consensus pattern (13 bp):
TTTCTTTGTTTTT
Found at i:9964383 original size:50 final size:51
Alignment explanation
Indices: 9964325--9964451 Score: 148
Period size: 51 Copynumber: 2.5 Consensus size: 51
9964315 ATGGTCACGC
* *
9964325 GTGTAGTACTATGTGTAGGCTACTACATGTACCGGA-ACGAAAGGTCGCAT
1 GTGTAGTACTATGTGCAGGCTACTACATGTACCGGATACGAAAGGTCACAT
* * ** ** * **
9964375 GTGTAGTACAATGTGCAGGCTACTACGTGTATTGGATATTAATGGTCATGT
1 GTGTAGTACTATGTGCAGGCTACTACATGTACCGGATACGAAAGGTCACAT
9964426 GTGTAGTACTATGTGCAGGCTACTAC
1 GTGTAGTACTATGTGCAGGCTACTAC
9964452 GTGAACCAGA
Statistics
Matches: 64, Mismatches: 12, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 31 0.48
51 33 0.52
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.31
Consensus pattern (51 bp):
GTGTAGTACTATGTGCAGGCTACTACATGTACCGGATACGAAAGGTCACAT
Found at i:9964440 original size:51 final size:50
Alignment explanation
Indices: 9964315--9964506 Score: 186
Period size: 50 Copynumber: 3.8 Consensus size: 50
9964305 AGTGAAAGTG
* * *
9964315 ATGGTCACGCGTGTAGTACTATGTGTAGGCTACTACATGTACCGGAACGA
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAACGA
* * * * ** **
9964365 AAGGTCGCATGTGTAGTACAATGTGCAGGCTACTACGTGTATTGGATATTA
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGA-ACGA
* * * * *
9964416 ATGGTCATGTGTGTAGTACTATGTGCAGGCTACTACGTGAACCAGAAAGT
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAACGA
* * * * *
9964466 TTGATCACGTATGTAGTACTGTGTGAAGGCTACTACGTGTA
1 ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTA
9964507 TCGAATGATA
Statistics
Matches: 111, Mismatches: 30, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
50 72 0.65
51 39 0.35
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.30
Consensus pattern (50 bp):
ATGGTCACGTGTGTAGTACTATGTGCAGGCTACTACGTGTACCGGAACGA
Found at i:9965762 original size:33 final size:33
Alignment explanation
Indices: 9965720--9965785 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
9965710 CATTTTGGTA
* *
9965720 CATAGATAATGCTGGGTGATAATCATGCTTTGT
1 CATAGATAATGATGGATGATAATCATGCTTTGT
9965753 CATAGATAATGATGGATGATAATCATGCTTTGT
1 CATAGATAATGATGGATGATAATCATGCTTTGT
9965786 GAAATATCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (33 bp):
CATAGATAATGATGGATGATAATCATGCTTTGT
Found at i:9980616 original size:480 final size:480
Alignment explanation
Indices: 9979715--9980666 Score: 1559
Period size: 480 Copynumber: 2.0 Consensus size: 480
9979705 CATCTAACAT
*
9979715 AGTTATTAGTTGATCAGAATTAGCTGGTTCAGAAGTTACCTTGTCAGATTTTACAAATTCAATTT
1 AGTTATTAGTTGATCAGAATTAGCTGGTTCAAAAGTTACCTTGTCAGATTTTACAAATTCAATTT
** *
9979780 ATGGTGAAATAGGAATTTCAACACTCGGTTGAACTTCCTCTGATTCTTGAGCATCAGCTAGCTCC
66 ACAGTGAAATAGGAATTTCAACACTCGATTGAACTTCCTCTGATTCTTGAGCATCAGCTAGCTCC
* * *
9979845 TTCTCAACTTTGATGGAATTGGGATCTAAATTTTTTCCGCTCCTCAATGTTAACGCTTTACAATG
131 TTCTCAACTTTGATGGAATTGGGATCTAAAGTCTTTCCGCTCCTCAATGTTAACGCTTTACAATA
* * *
9979910 CTCCTTCCCTGGATTCCTCAAATTCTCCGTATCACTAGGTAAAGCACATTGTGGTCAGTTTCTGA
196 CTCCTTCCCTAGATTCCTCAAATTCTCCATATCACTAGGTAAAGCACATTGTGGTCAGTTTCTAA
* * *
9979975 GTTCAGTTGCAAGTTGGCCCACTTAATTCTCCAATTTCCTTAGATAAGTATCATTTCTCACCATG
261 GTTCAGTTGCAAGCTGGCCCACTTAATTCTCCAAATTCCTTAGAGAAGTATCATTTCTCACCATG
* * *
9980040 TATTCCTTCAATAGATTCTCTAGGCTATTGTATGGTTCAGCTTGGGTTGGTTTTTGAGCTTGTTG
326 TATTCCTTCAACAGATTCTCTAGGCTATTGGATGGTTCAGCTTGGGTTGGTTTCTGAGCTTGTTG
* * * *
9980105 GGAAAAACTAGGTGGCTAGGTCGATCTAGGTTGGACTTAATTGTTACTGTTTCCTACGGTTAGTC
391 GGAAAAACTAGGTGGCTAGGTCAATCTAGGTTGGACATAATTGTTACTGGTTCCTACGGTTACTC
*
9980170 TAGGAAAAATTTGGGTGTTTAACGC
456 TAGGAAAAATTCGGGTGTTTAACGC
* *
9980195 AGTTATTAGTTGATCAGAATTAGCTGGTTCAAAAGTTACCTTGTCAGATTTTATAGATTCAATTT
1 AGTTATTAGTTGATCAGAATTAGCTGGTTCAAAAGTTACCTTGTCAGATTTTACAAATTCAATTT
* * * *
9980260 CCAGTGTAACTA-GAATTTCAACACTCGATTGAACTTCCTCTTATTCTTGAGCGTCAGCTAGCTC
66 ACAGTG-AAATAGGAATTTCAACACTCGATTGAACTTCCTCTGATTCTTGAGCATCAGCTAGCTC
* *
9980324 CTTCTCAACTTTGATGGAATTGGGCTCTAAAGTCTTTCTGCTCCTCAATGTTAACGCTTTACAAT
130 CTTCTCAACTTTGATGGAATTGGGATCTAAAGTCTTTCCGCTCCTCAATGTTAACGCTTTACAAT
*
9980389 ACTCCTTCCCTAGATTCCTCAAATTCTCCATATCACTAGGTAAAGCACCTTGTGGTCAGTTTCTA
195 ACTCCTTCCCTAGATTCCTCAAATTCTCCATATCACTAGGTAAAGCACATTGTGGTCAGTTTCTA
* *
9980454 AGTTCAGTTGCATGCTGGCCCACTTGATTCTCCAAATTCCTTAGAGAAGTATCATTTCT-AGCCA
260 AGTTCAGTTGCAAGCTGGCCCACTTAATTCTCCAAATTCCTTAGAGAAGTATCATTTCTCA-CCA
9980518 TGT-TTGCCTTCAACAGATTCTCTAGGCTATTGGATGGTTCAGCTTGGGTTGGTTTCTGAGCTTG
324 TGTATT-CCTTCAACAGATTCTCTAGGCTATTGGATGGTTCAGCTTGGGTTGGTTTCTGAGCTTG
*
9980582 TTGGGAAAAACTAGGTGGCTAGGTCAATCTAGGTTGGACATAATTGTTACTGGTTCCTGCGGTTA
388 TTGGGAAAAACTAGGTGGCTAGGTCAATCTAGGTTGGACATAATTGTTACTGGTTCCTACGGTTA
9980647 CTCTAGGAAAAATTCGGGTG
453 CTCTAGGAAAAATTCGGGTG
9980667 GTTTCGCCAT
Statistics
Matches: 436, Mismatches: 33, Indels: 6
0.92 0.07 0.01
Matches are distributed among these distances:
479 3 0.01
480 429 0.98
481 4 0.01
ACGTcount: A:0.24, C:0.20, G:0.20, T:0.36
Consensus pattern (480 bp):
AGTTATTAGTTGATCAGAATTAGCTGGTTCAAAAGTTACCTTGTCAGATTTTACAAATTCAATTT
ACAGTGAAATAGGAATTTCAACACTCGATTGAACTTCCTCTGATTCTTGAGCATCAGCTAGCTCC
TTCTCAACTTTGATGGAATTGGGATCTAAAGTCTTTCCGCTCCTCAATGTTAACGCTTTACAATA
CTCCTTCCCTAGATTCCTCAAATTCTCCATATCACTAGGTAAAGCACATTGTGGTCAGTTTCTAA
GTTCAGTTGCAAGCTGGCCCACTTAATTCTCCAAATTCCTTAGAGAAGTATCATTTCTCACCATG
TATTCCTTCAACAGATTCTCTAGGCTATTGGATGGTTCAGCTTGGGTTGGTTTCTGAGCTTGTTG
GGAAAAACTAGGTGGCTAGGTCAATCTAGGTTGGACATAATTGTTACTGGTTCCTACGGTTACTC
TAGGAAAAATTCGGGTGTTTAACGC
Found at i:9987058 original size:25 final size:25
Alignment explanation
Indices: 9987007--9987059 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
9986997 AAAATATGAT
* *
9987007 TTTTTGATTAATTTGAATAGAATTA
1 TTTTTGAATAATTTGAATAGAAATA
* **
9987032 TTTTTGAATGATTTGAATTTAAATA
1 TTTTTGAATAATTTGAATAGAAATA
9987057 TTT
1 TTT
9987060 AGATCAAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.00, G:0.11, T:0.55
Consensus pattern (25 bp):
TTTTTGAATAATTTGAATAGAAATA
Found at i:9989506 original size:67 final size:67
Alignment explanation
Indices: 9989364--9989510 Score: 179
Period size: 67 Copynumber: 2.2 Consensus size: 67
9989354 ACGGCTTGGC
* * * * * * *
9989364 ACACGGACATGTGGCTTGGCCGTGAGACCTAAGTCAAAGAGTTACATGGGAACGAATGGGGGTTG
1 ACACGGCCGTGTGGCTTGGCCGTGAGACCCAAGTCAAAGAGTAACATGGGAACGAACGCGGGCTG
9989429 GG
66 GG
* * *
9989431 ACATGGCCGTGTGGCTTGGCCGTGTGACCCAAGTCAAAGAGTAACATGGGCAC-AGACGCGGGCT
1 ACACGGCCGTGTGGCTTGGCCGTGAGACCCAAGTCAAAGAGTAACATGGGAACGA-ACGCGGGCT
9989495 GGG
65 GGG
*
9989498 GCACGGCCGTGTG
1 ACACGGCCGTGTG
9989511 TCCCTACTTC
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
66 1 0.01
67 66 0.99
ACGTcount: A:0.23, C:0.21, G:0.38, T:0.18
Consensus pattern (67 bp):
ACACGGCCGTGTGGCTTGGCCGTGAGACCCAAGTCAAAGAGTAACATGGGAACGAACGCGGGCTG
GG
Found at i:10005397 original size:14 final size:14
Alignment explanation
Indices: 10005378--10005404 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
10005368 TGATTCGATA
10005378 TAACCTTTTATGAT
1 TAACCTTTTATGAT
10005392 TAACCTTTTATGA
1 TAACCTTTTATGA
10005405 AATAATCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.15, G:0.07, T:0.48
Consensus pattern (14 bp):
TAACCTTTTATGAT
Found at i:10010671 original size:77 final size:76
Alignment explanation
Indices: 10010544--10010756 Score: 293
Period size: 75 Copynumber: 2.8 Consensus size: 76
10010534 TATCCGTTAT
* * *
10010544 CGGTGGATTTAGCACTTAGCAACCATCAATGATTCGGGGAATCAGCACTTAGCAACCCCTTTTCA
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
10010609 CATTCAAAAATA
66 CATT-AAAAATA
* * *
10010621 CGGTGGAATCAGCACTTAGCAACCACCAATGAATCAGGGAATCAACACTTAGCAACCCC-TTTCA
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
* *
10010685 CATTTAAGATA
66 CATTAAAAATA
* * * * *
10010696 TGATGGGATTAGCACTTAGCAACCACCAATGATTCAAGGAATCAGCACTTAGAAACCCCTT
1 CGGTGGAATTAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTT
10010757 GGGGGAATTA
Statistics
Matches: 119, Mismatches: 16, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
75 56 0.47
76 10 0.08
77 53 0.45
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (76 bp):
CGGTGGAATTAGCACTTAGCAACCACCAATGATTCAGGGAATCAGCACTTAGCAACCCCTTTTCA
CATTAAAAATA
Found at i:10017815 original size:21 final size:21
Alignment explanation
Indices: 10017791--10017832 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
10017781 GATCAAATCC
* *
10017791 AAAATGGAAACTGAGATAGAA
1 AAAATAGAAACTGAGAAAGAA
*
10017812 AAAATAGAATCTGAGAAAGAA
1 AAAATAGAAACTGAGAAAGAA
10017833 TCGAGCAATC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.60, C:0.05, G:0.21, T:0.14
Consensus pattern (21 bp):
AAAATAGAAACTGAGAAAGAA
Found at i:10018273 original size:23 final size:22
Alignment explanation
Indices: 10018228--10018274 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
10018218 TTGTCTTTGG
* **
10018228 TTTTTATTTCTTTTTAGGTTTT
1 TTTTTATTTCTTGTTAGAATTT
10018250 TTTTTATTTCTTAGTTAGAATTT
1 TTTTTATTTCTT-GTTAGAATTT
10018273 TT
1 TT
10018275 CTTCCGCATA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.15, C:0.04, G:0.09, T:0.72
Consensus pattern (22 bp):
TTTTTATTTCTTGTTAGAATTT
Found at i:10018540 original size:25 final size:25
Alignment explanation
Indices: 10018512--10018561 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 25
10018502 CAAAAGGGGG
* *
10018512 TAAGGCATTTTGCATGAATTTTTAA
1 TAAGACATTTCGCATGAATTTTTAA
10018537 TAAGACATTTCGCATGAATTTTTAA
1 TAAGACATTTCGCATGAATTTTTAA
10018562 AGTATGTTTC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (25 bp):
TAAGACATTTCGCATGAATTTTTAA
Found at i:10022784 original size:42 final size:43
Alignment explanation
Indices: 10022637--10022872 Score: 205
Period size: 43 Copynumber: 5.6 Consensus size: 43
10022627 ATCCATTACT
* * * *
10022637 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACATTCAATAATA
* * * * *
10022679 CGG-GGAATCAACACATAGCAACC-CCTTTCACAGTAAAAAATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACATTCAATAATA
* * *
10022721 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTAATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACATTCAATAATA
** * * *
10022764 C-AAGGAATCAGCACATAGCAACC-CCTTTCACAATCAATGATA
1 CGGTGGAATCAGCACTTAGCAACCACCTTT-ACATTCAATAATA
* * *
10022806 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAATCAATAATT
1 CGGTGGAATCAGCACTTAGCAACCACCTTTACATTCAATAATA
* *
10022849 CGG-GAAAATCAGCACTTAGTAACC
1 CGGTG-GAATCAGCACTTAGCAACC
10022873 CTTTTTTATT
Statistics
Matches: 153, Mismatches: 33, Indels: 15
0.76 0.16 0.07
Matches are distributed among these distances:
40 2 0.01
41 24 0.16
42 42 0.27
43 75 0.49
44 10 0.07
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (43 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTACATTCAATAATA
Found at i:10022789 original size:85 final size:85
Alignment explanation
Indices: 10022637--10022847 Score: 307
Period size: 85 Copynumber: 2.5 Consensus size: 85
10022627 ATCCATTACT
* **
10022637 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAAGGAATCAACACATAGCAAC
*
10022701 CCCTTTCACAGTAAAAAATA
66 CCCTTTCACAATAAAAAATA
* *
10022721 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTAATACAAGGAATCAGCACATAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAAGGAATCAACACATAGCAAC
* **
10022786 CCCTTTCACAATCAATGATA
66 CCCTTTCACAATAAAAAATA
* * *
10022806 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAATCAATAAT
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAAT
10022848 TCGGGAAAAT
Statistics
Matches: 113, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
84 27 0.24
85 86 0.76
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.23
Consensus pattern (85 bp):
CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACAAGGAATCAACACATAGCAAC
CCCTTTCACAATAAAAAATA
Found at i:10022876 original size:85 final size:84
Alignment explanation
Indices: 10022637--10022873 Score: 305
Period size: 85 Copynumber: 2.8 Consensus size: 84
10022627 ATCCATTACT
* *
10022637 CGGTGGATTCAGCACTTAGCAACCACC-TTAAATTCAGTGATACGGGGAATCAACACATAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATAC-GGGAATCAGCACATAGCAAC
*
10022701 CCCTTTCACAGTAAAAAATA
65 CCCTTTCACAATAAAAAATA
* *
10022721 CGGTGGATTCAGCACTTAGCAACCACCTTTATATTCAGTAATACAAGGAATCAGCACATAGCAAC
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATAC-GGGAATCAGCACATAGCAAC
* **
10022786 CCCTTTCACAATCAATGATA
65 CCCTTTCACAATAAAAAATA
* * * * * *
10022806 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAATCAATAATTCGGGAAAATCAGCACTTAGTAA
1 CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGG--AATCAGCACATAGCAA
10022871 CCC
64 CCC
10022874 TTTTTTATTC
Statistics
Matches: 133, Mismatches: 17, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
84 29 0.22
85 87 0.65
86 17 0.13
ACGTcount: A:0.36, C:0.25, G:0.16, T:0.23
Consensus pattern (84 bp):
CGGTGGATTCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGAATCAGCACATAGCAACC
CCTTTCACAATAAAAAATA
Found at i:10029918 original size:20 final size:20
Alignment explanation
Indices: 10029872--10029923 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 20
10029862 AAGCTTATGC
10029872 TAAGTAAATGGAATACAAAG
1 TAAGTAAATGGAATACAAAG
* * ** *
10029892 TAGGTAAATGGGATGGAAGG
1 TAAGTAAATGGAATACAAAG
10029912 TAAGTAAATGGA
1 TAAGTAAATGGA
10029924 GTTGTTCATA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.46, C:0.02, G:0.31, T:0.21
Consensus pattern (20 bp):
TAAGTAAATGGAATACAAAG
Found at i:10040957 original size:21 final size:21
Alignment explanation
Indices: 10040927--10040966 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
10040917 ATCCTAGACA
*
10040927 TGGATATATCTATTGCCATAC
1 TGGATATATCTATTACCATAC
*
10040948 TGGATGTATCTATTACCAT
1 TGGATATATCTATTACCAT
10040967 TTTAACCACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (21 bp):
TGGATATATCTATTACCATAC
Found at i:10064033 original size:43 final size:42
Alignment explanation
Indices: 10063924--10064034 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 42
10063914 AACTTACGTC
* **
10063924 TAAGACCATGTCTGGGACATTGGCATCATATATGATTTCTTG
1 TAAGACCATGTCTGGGACATTGGCATCATATATGATTACAAG
* * * * *
10063966 TAACACCCTGTCTAGGATAGTGGCATCGATAT-TAGATTACAAG
1 TAAGACCATGTCTGGGACATTGGCATC-ATATAT-GATTACAAG
10064009 TAAGACCATGTCTGGGACATTGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
10064035 TGTATGAGCT
Statistics
Matches: 54, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 23 0.43
43 31 0.57
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.31
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCATATATGATTACAAG
Found at i:10067855 original size:47 final size:47
Alignment explanation
Indices: 10067785--10067944 Score: 212
Period size: 47 Copynumber: 3.4 Consensus size: 47
10067775 GTCACAGTAA
* * * *
10067785 TGCAAATAATCTGCCACTGAATAATATTGTGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACCACTTT
* * *
10067832 TGTAGATAAATTGCCACTTAATAAAATTGTGGACAAGCCACCACATT
1 TGCAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACCACTTT
* * * *
10067879 AGCAGATAAACTGTCACTTTATAAAATTATGGACAAGCCACCACTTT
1 TGCAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACCACTTT
*
10067926 TGCAGATAAACTGTCACTT
1 TGCAGATAAACTGCCACTT
10067945 CTTCCTCGTT
Statistics
Matches: 98, Mismatches: 15, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 98 1.00
ACGTcount: A:0.36, C:0.21, G:0.14, T:0.28
Consensus pattern (47 bp):
TGCAGATAAACTGCCACTTAATAAAATTGTGGACAAGCCACCACTTT
Found at i:10069879 original size:15 final size:15
Alignment explanation
Indices: 10069855--10069884 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
10069845 TTCTCGGTTC
*
10069855 ACTAATCCAATTTTT
1 ACTAACCCAATTTTT
10069870 ACTAACCCAATTTTT
1 ACTAACCCAATTTTT
10069885 GGGATGTGAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
ACTAACCCAATTTTT
Found at i:10072821 original size:20 final size:20
Alignment explanation
Indices: 10072796--10072835 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10072786 ATGTGGCCAA
10072796 AAAAAT-AACATTTTCACTTT
1 AAAAATCAA-ATTTTCACTTT
10072816 AAAAATCAAATTTTCACTTT
1 AAAAATCAAATTTTCACTTT
10072836 GTCATGTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 17 0.89
21 2 0.11
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (20 bp):
AAAAATCAAATTTTCACTTT
Found at i:10072939 original size:22 final size:23
Alignment explanation
Indices: 10072900--10072944 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 23
10072890 TGCTATTAAC
*
10072900 ATATTTACACAATATATATATCA
1 ATATTTACACAATATATAAATCA
* *
10072923 ATATTT-CACATTTTATAAATCA
1 ATATTTACACAATATATAAATCA
10072945 TGCGAAACTC
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.44, C:0.13, G:0.00, T:0.42
Consensus pattern (23 bp):
ATATTTACACAATATATAAATCA
Found at i:10073953 original size:24 final size:24
Alignment explanation
Indices: 10073905--10073951 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
10073895 ACTGGTCATA
*
10073905 GAGAGAATTGAGGAGGGATATTTG
1 GAGAGAATTGAGGAGGAATATTTG
*
10073929 GAGAGATTTGAGGAGAGAATATT
1 GAGAGAATTGAGGAG-GAATATT
10073952 GGGATTTGGG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 14 0.70
25 6 0.30
ACGTcount: A:0.36, C:0.00, G:0.38, T:0.26
Consensus pattern (24 bp):
GAGAGAATTGAGGAGGAATATTTG
Found at i:10074660 original size:27 final size:26
Alignment explanation
Indices: 10074617--10074861 Score: 256
Period size: 27 Copynumber: 9.1 Consensus size: 26
10074607 CAATATCTGC
*
10074617 ACCGAAATACCCTCATAGAGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
* * *
10074644 ACCGAAATACCTCCATAGGTTACAATT
1 ACCGAAATACC-CCATAGGGTAAAATG
10074671 ACCGAAATACCCTCATAGGGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
**
10074698 ATTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATA-CCCCATAGGGTAAAATG
** * *
10074725 ATTGAAATACCCTTAAAGGGTAAAATG
1 ACCGAAATACCC-CATAGGGTAAAATG
*
10074752 ACTGAAATACCCCTATAGGGTAAAATG
1 ACCGAAATACCCC-ATAGGGTAAAATG
*
10074779 ACCGAAATCCCCCCATAGGGTAAAATG
1 ACCGAAAT-ACCCCATAGGGTAAAATG
* * *
10074806 ATCGAAATACCCCCACAGGGTAAAATA
1 ACCGAAATA-CCCCATAGGGTAAAATG
* *
10074833 ATCGAAATACCCCCATAAGGTAAAATG
1 ACCGAAATA-CCCCATAGGGTAAAATG
10074860 AC
1 AC
10074862 TGTTATTGAT
Statistics
Matches: 187, Mismatches: 24, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
26 4 0.02
27 175 0.94
28 8 0.04
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (26 bp):
ACCGAAATACCCCATAGGGTAAAATG
Found at i:10074705 original size:54 final size:54
Alignment explanation
Indices: 10074617--10074861 Score: 301
Period size: 54 Copynumber: 4.5 Consensus size: 54
10074607 CAATATCTGC
* * * * *
10074617 ACCGAAATACCCTCATAGAGTAAAATGACCGAAATACCTCCATAGGTTACAATT
1 ACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG
**
10074671 ACCGAAATACCCTCATAGGGTAAAATGATTGAAATACCCCCATAGGGTAAAATG
1 ACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG
** * * * *
10074725 ATTGAAATACCCTTAAAGGGTAAAATGACTGAAATACCCCTATAGGGTAAAATG
1 ACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG
* * * * *
10074779 ACCGAAATCCCCCCATAGGGTAAAATGATCGAAATACCCCCACAGGGTAAAATA
1 ACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG
* * *
10074833 ATCGAAATACCCCCATAAGGTAAAATGAC
1 ACCGAAATACCCTCATAGGGTAAAATGAC
10074862 TGTTATTGAT
Statistics
Matches: 163, Mismatches: 28, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
54 163 1.00
ACGTcount: A:0.42, C:0.22, G:0.16, T:0.20
Consensus pattern (54 bp):
ACCGAAATACCCTCATAGGGTAAAATGACCGAAATACCCCCATAGGGTAAAATG
Found at i:10076568 original size:28 final size:29
Alignment explanation
Indices: 10076528--10076728 Score: 301
Period size: 28 Copynumber: 7.2 Consensus size: 29
10076518 TTATTACACT
*
10076528 ACACTG-TTACTGTATTTGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
10076556 ACACTGATT-CTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
10076584 ACACT-ATTACTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
10076612 ACACT-ATTACTGTATTAGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
10076640 ACACTAATT-CTGTATTGGGCTAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
10076668 ACACT-ATTACTGTATTGGGCTATGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
*
10076696 ACACTG-TTACTATATTGGG-TAAGGCCC
1 ACACTGATTACTGTATTGGGCTAAGGCCC
10076723 ACACTG
1 ACACTG
10076729 TACTGTCACT
Statistics
Matches: 162, Mismatches: 6, Indels: 11
0.91 0.03 0.06
Matches are distributed among these distances:
27 19 0.12
28 138 0.85
29 5 0.03
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (29 bp):
ACACTGATTACTGTATTGGGCTAAGGCCC
Found at i:10076626 original size:84 final size:84
Alignment explanation
Indices: 10076528--10076728 Score: 341
Period size: 84 Copynumber: 2.4 Consensus size: 84
10076518 TTATTACACT
10076528 ACACTGTTACTGTATTTGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACACTATTA
1 ACACTGTTACTGTATTTGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACACTATTA
10076593 CTGTATTGGGCTAAGGCCC
66 CTGTATTGGGCTAAGGCCC
* * *
10076612 ACACTATTACTGTATTAGGCTAAGGCCCACACTAATTCTGTATTGGGCTAAGGCCCACACTATTA
1 ACACTGTTACTGTATTTGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACACTATTA
*
10076677 CTGTATTGGGCTATGGCCC
66 CTGTATTGGGCTAAGGCCC
* *
10076696 ACACTGTTACTATA-TTGGGTAAGGCCCACACTG
1 ACACTGTTACTGTATTTGGCTAAGGCCCACACTG
10076729 TACTGTCACT
Statistics
Matches: 108, Mismatches: 9, Indels: 1
0.92 0.08 0.01
Matches are distributed among these distances:
83 16 0.15
84 92 0.85
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.29
Consensus pattern (84 bp):
ACACTGTTACTGTATTTGGCTAAGGCCCACACTGATTCTGTATTGGGCTAAGGCCCACACTATTA
CTGTATTGGGCTAAGGCCC
Found at i:10094312 original size:17 final size:17
Alignment explanation
Indices: 10094290--10094322 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10094280 ATTCTTTGAG
10094290 AATTGCCAC-AGCATTTC
1 AATTGCC-CTAGCATTTC
10094307 AATTGCCCTAGCATTT
1 AATTGCCCTAGCATTT
10094323 TTTCATTCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAGCATTTC
Found at i:10106641 original size:164 final size:164
Alignment explanation
Indices: 10106370--10106699 Score: 579
Period size: 164 Copynumber: 2.0 Consensus size: 164
10106360 ACTCCTTAAA
* **
10106370 AAGTGATACCACACCTTCCCGATTGGTTTTAATGCAGCTCTGTCAACCGTGAAACACTTTTGGCT
1 AAGTGATACCACACCTTCCCGATTGGTTTTAATGCAGCTCTGTAAACCGTGAAACACTCCTGGCT
10106435 TGAAATAATCCACTACGTTCCTTCAATGCATAAATCCTCTTATACTTTTGCCAACCCTTCCGGTG
66 TGAAATAATCCACTACGTTCCTTCAATGCATAAATCCTCTTATACTTTTGCCAACCCTTCCGGTG
10106500 TAATATTCTCGACAAATTCAACATACTTATCTCT
131 TAATATTCTCGACAAATTCAACATACTTATCTCT
* * ** *
10106534 AAGTGATACCACACCTTTCCGATTGGTTTTAATGCAGCTCTTTAAATTGTGTAACACTCCTGGCT
1 AAGTGATACCACACCTTCCCGATTGGTTTTAATGCAGCTCTGTAAACCGTGAAACACTCCTGGCT
10106599 TGAAATAATCCACTACGTTCCTTCAATGCATAAATCCTCTTATACTTTTGCCAACCCTTCCGGTG
66 TGAAATAATCCACTACGTTCCTTCAATGCATAAATCCTCTTATACTTTTGCCAACCCTTCCGGTG
*
10106664 TAATATTCTCGGCAAATTCAACATACTTATCTCT
131 TAATATTCTCGACAAATTCAACATACTTATCTCT
10106698 AA
1 AA
10106700 CCTCCTCAAT
Statistics
Matches: 157, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
164 157 1.00
ACGTcount: A:0.28, C:0.26, G:0.12, T:0.34
Consensus pattern (164 bp):
AAGTGATACCACACCTTCCCGATTGGTTTTAATGCAGCTCTGTAAACCGTGAAACACTCCTGGCT
TGAAATAATCCACTACGTTCCTTCAATGCATAAATCCTCTTATACTTTTGCCAACCCTTCCGGTG
TAATATTCTCGACAAATTCAACATACTTATCTCT
Found at i:10107562 original size:3 final size:3
Alignment explanation
Indices: 10107554--10107585 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
10107544 TGCACTAAAC
10107554 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
10107586 GGGAAATAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:10116156 original size:24 final size:24
Alignment explanation
Indices: 10116124--10116173 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
10116114 GAGGAAGAAT
*
10116124 TGGTGGCTTCATCCACAACCTACA
1 TGGTAGCTTCATCCACAACCTACA
*
10116148 TGGTAGCTTCGTCCACAACCTACA
1 TGGTAGCTTCATCCACAACCTACA
10116172 TG
1 TG
10116174 ACAGCTTGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.24, C:0.32, G:0.18, T:0.26
Consensus pattern (24 bp):
TGGTAGCTTCATCCACAACCTACA
Found at i:10116179 original size:24 final size:24
Alignment explanation
Indices: 10116129--10116180 Score: 77
Period size: 24 Copynumber: 2.2 Consensus size: 24
10116119 AGAATTGGTG
**
10116129 GCTTCATCCACAACCTACATGGTA
1 GCTTCATCCACAACCTACATGACA
*
10116153 GCTTCGTCCACAACCTACATGACA
1 GCTTCATCCACAACCTACATGACA
10116177 GCTT
1 GCTT
10116181 GTCTGCAAAT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.27, C:0.35, G:0.13, T:0.25
Consensus pattern (24 bp):
GCTTCATCCACAACCTACATGACA
Found at i:10123224 original size:42 final size:40
Alignment explanation
Indices: 10123177--10123259 Score: 103
Period size: 42 Copynumber: 2.0 Consensus size: 40
10123167 ATTGGGTGGA
*
10123177 TCAGCTCTTACGAGCTTTTATTTAGTTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTTTATTCAG--CTTACGAGCTTCTGT
* * * *
10123219 TCAGCTCTTAGGAGGTTTTGTTCAGCTTTCGAGCTTCTGT
1 TCAGCTCTTACGAGCTTTTATTCAGCTTACGAGCTTCTGT
10123259 T
1 T
10123260 GGCATATTCG
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
40 15 0.42
42 21 0.58
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.45
Consensus pattern (40 bp):
TCAGCTCTTACGAGCTTTTATTCAGCTTACGAGCTTCTGT
Found at i:10123227 original size:21 final size:21
Alignment explanation
Indices: 10123177--10123259 Score: 89
Period size: 21 Copynumber: 4.0 Consensus size: 21
10123167 ATTGGGTGGA
* *
10123177 TCAGCTCTTACGAGCTTTTAT
1 TCAGCTCTTACGAGCTTCTGT
* *
10123198 TTAGTTCTTACGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
* * *
10123219 TCAGCTCTTAGGAGGTTTTGT
1 TCAGCTCTTACGAGCTTCTGT
10123240 TCAGCT-TT-CGAGCTTCTGT
1 TCAGCTCTTACGAGCTTCTGT
10123259 T
1 T
10123260 GGCATATTCG
Statistics
Matches: 50, Mismatches: 12, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
19 9 0.18
20 2 0.04
21 39 0.78
ACGTcount: A:0.14, C:0.20, G:0.20, T:0.45
Consensus pattern (21 bp):
TCAGCTCTTACGAGCTTCTGT
Found at i:10127128 original size:22 final size:22
Alignment explanation
Indices: 10127102--10127143 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10127092 TGTATTTACT
* *
10127102 ATTTAACCATTAATTTAATTTA
1 ATTTAACAATTAATATAATTTA
*
10127124 ATTTAATAATTAATATAATT
1 ATTTAACAATTAATATAATT
10127144 CTCCTAACAG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.45, C:0.05, G:0.00, T:0.50
Consensus pattern (22 bp):
ATTTAACAATTAATATAATTTA
Found at i:10137120 original size:25 final size:25
Alignment explanation
Indices: 10137092--10137152 Score: 77
Period size: 25 Copynumber: 2.4 Consensus size: 25
10137082 AGGTTTAAGG
* *
10137092 TTTATAGTTTATATATGTTTTATGA
1 TTTAGAGTTTATATATGTTCTATGA
*
10137117 TTTAGGGTTTATATATGTTCTATGA
1 TTTAGAGTTTATATATGTTCTATGA
* *
10137142 TTCAGGGTTTA
1 TTTAGAGTTTA
10137153 AGGAATATGG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.25, C:0.03, G:0.18, T:0.54
Consensus pattern (25 bp):
TTTAGAGTTTATATATGTTCTATGA
Found at i:10137357 original size:7 final size:7
Alignment explanation
Indices: 10137342--10137388 Score: 58
Period size: 7 Copynumber: 6.6 Consensus size: 7
10137332 TTGAGGCTTA
10137342 GGGTGTAG
1 GGGT-TAG
*
10137350 GTGTTAG
1 GGGTTAG
10137357 GGGTTAG
1 GGGTTAG
10137364 GGGTTAG
1 GGGTTAG
*
10137371 GGGTTAA
1 GGGTTAG
*
10137378 GGGTTAA
1 GGGTTAG
10137385 GGGT
1 GGGT
10137389 CATGGTTTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
7 33 0.92
8 3 0.08
ACGTcount: A:0.17, C:0.00, G:0.53, T:0.30
Consensus pattern (7 bp):
GGGTTAG
Found at i:10137462 original size:7 final size:7
Alignment explanation
Indices: 10137450--10137525 Score: 55
Period size: 7 Copynumber: 10.6 Consensus size: 7
10137440 CCCAAGTCAA
10137450 TTTAGGG
1 TTTAGGG
10137457 TTTAGGG
1 TTTAGGG
**
10137464 TTTATACG
1 TTTA-GGG
**
10137472 -TTATTG
1 TTTAGGG
*
10137478 TTTGGGG
1 TTTAGGG
10137485 TTTATGGG
1 TTTA-GGG
*
10137493 TTTAAGG
1 TTTAGGG
10137500 TTTAAGGG
1 TTT-AGGG
*
10137508 TTAAGGG
1 TTTAGGG
10137515 TTTAGGG
1 TTTAGGG
10137522 TTTA
1 TTTA
10137526 AGGAATAGAG
Statistics
Matches: 53, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
6 1 0.02
7 39 0.74
8 13 0.25
ACGTcount: A:0.18, C:0.01, G:0.34, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:10137501 original size:15 final size:14
Alignment explanation
Indices: 10137483--10137528 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 14
10137473 TATTGTTTGG
10137483 GGTTTATGGGTTTAA
1 GGTTTA-GGGTTTAA
10137498 GGTTTAAGGG-TTAA
1 GGTTT-AGGGTTTAA
10137512 GGGTTTAGGGTTTAA
1 -GGTTTAGGGTTTAA
10137527 GG
1 GG
10137529 AATAGAGTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
14 10 0.36
15 17 0.61
16 1 0.04
ACGTcount: A:0.22, C:0.00, G:0.39, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:10139316 original size:51 final size:52
Alignment explanation
Indices: 10139261--10139366 Score: 142
Period size: 53 Copynumber: 2.0 Consensus size: 52
10139251 AGTTGGTATT
* *
10139261 TGGTTAATGCTGCTGCAAGTTC-TTTTTGCTGGAAGTTTTGCTTAATGTTGC
1 TGGTTAATGCTGCTGCAAGTTCTTTTTTGCTGCAAGTTGTGCTTAATGTTGC
* * * *
10139312 TGGTTAATGTTGTTGCAAGTTCTTTTTTTGCTGCACGTTGTGGTTAATGTTGC
1 TGGTTAATGCTGCTGCAAGTTC-TTTTTTGCTGCAAGTTGTGCTTAATGTTGC
10139365 TG
1 TG
10139367 CTTGGTGTAT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
51 20 0.43
53 27 0.57
ACGTcount: A:0.14, C:0.12, G:0.26, T:0.47
Consensus pattern (52 bp):
TGGTTAATGCTGCTGCAAGTTCTTTTTTGCTGCAAGTTGTGCTTAATGTTGC
Found at i:10140124 original size:67 final size:67
Alignment explanation
Indices: 10139999--10140124 Score: 166
Period size: 67 Copynumber: 1.9 Consensus size: 67
10139989 TATATTAATA
* * **
10139999 TGGATATATAACCTATATTCCAATTTTATTAATAATAAATTTTATAATTTATCGAATAAATGTAA
1 TGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTAAAATTTATAAAATAAATGTAA
10140064 AT
66 AT
* *
10140066 TGGATATATAACCTATATTTCAAATTTATTAGTAA-ACAATTTTTAAAATTTA-AAAATAA
1 TGGATATATAACCTATATTCCAAATTTATTAATAATA-AA-TTTTAAAATTTATAAAATAA
10140125 TTATAAATAA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
66 1 0.02
67 39 0.76
68 11 0.22
ACGTcount: A:0.45, C:0.07, G:0.06, T:0.42
Consensus pattern (67 bp):
TGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTAAAATTTATAAAATAAATGTAA
AT
Found at i:10140132 original size:67 final size:67
Alignment explanation
Indices: 10139990--10140132 Score: 164
Period size: 67 Copynumber: 2.1 Consensus size: 67
10139980 TATATAACAT
* * * **
10139990 ATATTAATATGGATATATAACCTATATTCCAATTTTATTAATAATAAATTTTATAATTTATCGAA
1 ATATAAAT-TGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTAAAATTTATAAAA
10140055 TAA
65 TAA
* * *
10140058 ATGTAAATTGGATATATAACCTATATTTCAAATTTATTAGTAA-ACAATTTTTAAAATTTA-AAA
1 ATATAAATTGGATATATAACCTATATTCCAAATTTATTAATAATA-AA-TTTTAAAATTTATAAA
10140121 ATAA
64 ATAA
*
10140125 TTATAAAT
1 ATATAAAT
10140133 AACAAGTATA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
66 1 0.02
67 45 0.71
68 17 0.27
ACGTcount: A:0.46, C:0.06, G:0.05, T:0.43
Consensus pattern (67 bp):
ATATAAATTGGATATATAACCTATATTCCAAATTTATTAATAATAAATTTTAAAATTTATAAAAT
AA
Found at i:10140257 original size:15 final size:15
Alignment explanation
Indices: 10140221--10140262 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
10140211 ATAAATATTT
* *
10140221 ATATACATTTTTAAT
1 ATATATATTTTTAAA
10140236 ATATATATTTTTAAA
1 ATATATATTTTTAAA
*
10140251 ATCTATATTTTT
1 ATATATATTTTT
10140263 TTCAAAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (15 bp):
ATATATATTTTTAAA
Found at i:10140257 original size:17 final size:18
Alignment explanation
Indices: 10140237--10140270 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
10140227 ATTTTTAATA
10140237 TATATATTTTT-AAAATC
1 TATATATTTTTCAAAATC
*
10140254 TATATTTTTTTCAAAAT
1 TATATATTTTTCAAAAT
10140271 TTATCAATCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (18 bp):
TATATATTTTTCAAAATC
Found at i:10140424 original size:9 final size:9
Alignment explanation
Indices: 10140412--10140609 Score: 159
Period size: 9 Copynumber: 23.1 Consensus size: 9
10140402 TAATAACATA
*
10140412 ATAACTAAC
1 ATAACTTAC
10140421 ATAA--TAC
1 ATAACTTAC
* *
10140428 ATAGCCTAC
1 ATAACTTAC
10140437 ATAACTTAC
1 ATAACTTAC
10140446 ATAACTTAC
1 ATAACTTAC
10140455 ATAACTTAC
1 ATAACTTAC
* *
10140464 ATAAATTAA
1 ATAACTTAC
10140473 ATAACTTAC
1 ATAACTTAC
10140482 ATAACTTAC
1 ATAACTTAC
*
10140491 ATAACTTAA
1 ATAACTTAC
10140500 ATAACTTAC
1 ATAACTTAC
*
10140509 ATGA--TAC
1 ATAACTTAC
*
10140516 ATAACCTTCC
1 ATAA-CTTAC
10140526 A-AACTTAC
1 ATAACTTAC
* *
10140534 ATTA--TAG
1 ATAACTTAC
*
10140541 ACAACTTAC
1 ATAACTTAC
10140550 ATAA-TTA-
1 ATAACTTAC
*
10140557 AT-ATTATAC
1 ATAACT-TAC
*
10140566 ACAACTTAC
1 ATAACTTAC
10140575 ATAA--TAC
1 ATAACTTAC
*
10140582 ATTACTTAC
1 ATAACTTAC
10140591 ATAACTTAC
1 ATAACTTAC
*
10140600 ATTACTTAC
1 ATAACTTAC
10140609 A
1 A
10140610 GTATTTACTG
Statistics
Matches: 149, Mismatches: 26, Indels: 28
0.73 0.13 0.14
Matches are distributed among these distances:
6 1 0.01
7 24 0.16
8 10 0.07
9 109 0.73
10 5 0.03
ACGTcount: A:0.46, C:0.20, G:0.02, T:0.32
Consensus pattern (9 bp):
ATAACTTAC
Found at i:10140591 original size:25 final size:25
Alignment explanation
Indices: 10140536--10140601 Score: 73
Period size: 25 Copynumber: 2.6 Consensus size: 25
10140526 AAACTTACAT
* *
10140536 TATAGACAACTTACATAATTAATAT
1 TATACACAACTTACATAATTAATAC
10140561 TATACACAACTTACATAA-TACATTAC
1 TATACACAACTTACATAATTA-A-TAC
*
10140587 T-TACATAACTTACAT
1 TATACACAACTTACAT
10140602 TACTTACAGT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
24 2 0.06
25 31 0.86
26 3 0.08
ACGTcount: A:0.45, C:0.18, G:0.02, T:0.35
Consensus pattern (25 bp):
TATACACAACTTACATAATTAATAC
Found at i:10148381 original size:10 final size:10
Alignment explanation
Indices: 10148366--10148394 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
10148356 TTTGAATTCA
10148366 GAAGTGCATC
1 GAAGTGCATC
10148376 GAAGTGCATC
1 GAAGTGCATC
10148386 GAAGTGCAT
1 GAAGTGCAT
10148395 TGATGAAGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.31, C:0.17, G:0.31, T:0.21
Consensus pattern (10 bp):
GAAGTGCATC
Found at i:10154959 original size:44 final size:44
Alignment explanation
Indices: 10154475--10155073 Score: 267
Period size: 44 Copynumber: 13.8 Consensus size: 44
10154465 GATCATATCT
* * * * *
10154475 AGTCTTATTTCCCTGAAGTTGCAGTGGAGCGGAGTAAGTAAAAA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
* * * * *
10154519 AGTCTTATC-CTCCTGAAATTGCGGT-GAGGAAGACT-GGAAATGACA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACTAAGCAA--ACA
* * * ** *
10154564 AATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGATA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAACA
* * * * *
10154609 A-TCCTATTTCCCTGAAGTTGCAGTGGAGCGGATTAA--AACCTGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAC--A
* * * * * *
10154652 A-TCTTATCTCTCTGAAGTTGCAG-AGAGCAG---AACCCATCT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
*
10154691 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
* * **
10154735 AGTATTATC-CTCCTGAAGTTGCAGT-GAGGAAGACTGAAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-AACA
* * * * ** *
10154780 AATCTTATCTCCCTGAGGTTGCAGTGGAGTAGATTAAAGCCGATA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAACA
* * * * * *
10154825 A-TCCTATCTCTCTGAAGTTCCAGTGGAGCAGATTAA--AACCTT
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAAC-A
* * * * * * * *
10154867 GGATCTTATCTCTCTGGAGTTGCAG-AGAGTAGA-T-CGC-ATCT
1 AG-TCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
*
10154908 AGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
* **
10154952 AGTCTTATC-CTCCTGAAGTTGCAGT-GAGGCAGACTGGAG-ATGGCA
1 AGTCTTATCTC-CCTGAAGTTGCAGTGGA-GCAGACT-AAGCA-AACA
* * * * *
10154997 AATCTTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGCCAATA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGCAAACA
* * *
10155042 A-TCCTATCTCCCTGAAATTGTAGTGGAGCAGA
1 AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGA
10155074 TTAAAATCAC
Statistics
Matches: 415, Mismatches: 100, Indels: 80
0.70 0.17 0.13
Matches are distributed among these distances:
39 3 0.01
40 40 0.10
41 16 0.04
42 9 0.02
43 45 0.11
44 192 0.46
45 100 0.24
46 9 0.02
47 1 0.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (44 bp):
AGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
Found at i:10154969 original size:217 final size:217
Alignment explanation
Indices: 10154389--10155199 Score: 1108
Period size: 217 Copynumber: 3.7 Consensus size: 217
10154379 TCGATGGCCA
* *
10154389 ATAATCCTATCTCCCTGAAGTTGCTGTGGAGCGGATTAAAACCTTGGATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * * * *
10154454 TGCAGAAAGCAGATCATATCTAGTCTTATTTCCCTGAAGTTGCAGTGGAGCGGAGTAAGTAAAAA
66 TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
* * *
10154519 AGTCTTATCCTCCTGAAATTGCGGTGAGGAAGACTGGAA-ATGACAAATCTTATCTCCCTGAAGC
131 AGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACT-GAAGATGGCAAATCTTATCTCCCTGAAGT
*
10154583 TGCAGTGGAGCAGATTAAAGCTG
195 TGCAGTGGAGCAGATTAAAGCCG
* * *
10154606 ATAATCCTATTTCCCTGAAGTTGCAGTGGAGCGGATTAAAACC-TGAATCTTATCTCTCTGAAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* *
10154670 TGCAGAGAGCAGAACCCATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
66 TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
* * *
10154735 AGTATTATCCTCCTGAAGTTGCAGTGAGGAAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTT
131 AGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
*
10154800 GCAGTGGAGTAGATTAAAGCCG
196 GCAGTGGAGCAGATTAAAGCCG
* * *
10154822 ATAATCCTATCTCTCTGAAGTTCCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGGAGT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * * *
10154887 TGCAGAGAGTAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTGGAGCAGACTAAGCAAACA
66 TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
* * *
10154952 AGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGGAGATGGCAAATCTTATCTCCCTGAAGTT
131 AGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
* *
10155017 GCAGTGGAGCATATTAAAGCCA
196 GCAGTGGAGCAGATTAAAGCCG
* * * *** * * *
10155039 ATAATCCTATCTCCCTGAAATTGTAGTGGAGCAGATTAAAATCACAGATCTTTTCTCTCTAAAAT
1 ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGT
* * ** * *
10155104 TCCAGTAGAGTAGATCACATCGGGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAG-AAA
66 TGCAG-AGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACT-AAGTAAA
*
10155168 GCAAGTCTCATCCCTCC-GAAATTGCAGTGAGG
129 -CAAGTCTTAT-CCTCCTGAAATTGCAGTGAGG
10155200 TTGACTAAAT
Statistics
Matches: 530, Mismatches: 58, Indels: 10
0.89 0.10 0.02
Matches are distributed among these distances:
215 3 0.01
216 191 0.36
217 257 0.48
218 48 0.09
219 26 0.05
220 5 0.01
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (217 bp):
ATAATCCTATCTCCCTGAAGTTGCAGTGGAGCAGATTAAAACCTTGGATCTTATCTCTCTGAAGT
TGCAGAGAGCAGATCACATCTAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACA
AGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGAAGATGGCAAATCTTATCTCCCTGAAGTT
GCAGTGGAGCAGATTAAAGCCG
Found at i:10155352 original size:433 final size:431
Alignment explanation
Indices: 10154436--10155369 Score: 915
Period size: 433 Copynumber: 2.2 Consensus size: 431
10154426 AAAACCTTGG
* * * * * * * *
10154436 ATCTTATCTCTCTGAAGTTGCAGAAAGCAGATC-ATATCTAGTCTTATTTCCCTGAAGTTGCAGT
1 ATCTCATCTCTCTGAAGTTGCAGAGAGTAAATCGA-ATATAATCCTATCTCCCTGAAGTTGCAGT
* * * *
10154500 GGAGCGGAGTAAGTAAAAAAGTCTTATCCTCCTGAAATTGCGGTGAGGAAGACTGGAAATGACAA
65 GGAGCAGACTAAGCAAAAAAGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGGAAATGACAA
** * *
10154565 ATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCTGATAATCCTATTTCCCTGAAGTTGC
130 ATCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAATTGC
* * * * * * *
10154630 AGTGGAGCGGATTAAAACCTGAATCTTATCTCTCTGAAGTTGCAGAGAGCAGAACCCATCTAGTC
195 AGTGGAGCAGATTAAAACCAGAATCTTATCTCTCTAAAATTCCAGAGAGCAGAACACATCGAGTC
* * *
10154695 TTATCTCCCTGAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTATTATCCTCCTGAAGTTGCAGT
260 TTATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTATCATCCTCCTGAAATTGCAGT
* ** * * *
10154760 GAGGAAGACTGAAGATGGCAAATCTTATCTCCCTGAGGTTGCAGTGGAGTAGATTAAAGCCGATA
325 GAGGAAGACTAAAGAAAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAA-CCGATA
* * * * ***
10154825 ATCCTATCTCTCTGAAGTTCCAGTGGAGCAGATTAAAACCTTGG
389 ATCCTAACTCACTGAAGTTCCAGTAGAGCAGATT-AAACATCAA
* * * * * * * *
10154869 ATCTTATCTCTCTGGAGTTGCAGAGAGTAGATCGCATCTAGTCTTATCTCCTTGAAGTTGCAGTG
1 ATCTCATCTCTCTGAAGTTGCAGAGAGTAAATCGAATATAATCCTATCTCCCTGAAGTTGCAGTG
* * * * *
10154934 GAGCAGACTAAGCAAACAAGTCTTATCCTCCTGAAGTTGCAGTGAGGCAGACTGGAGATGGCAAA
66 GAGCAGACTAAGCAAAAAAGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGGAAATGACAAA
* * *
10154999 TCTTATCTCCCTGAAGTTGCAGTGGAGCATATTAAAGCCAATAATCCTATCTCCCTGAAATTGTA
131 TCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAATTGCA
* * * *
10155064 GTGGAGCAGATTAAAATCACAG-ATCTTTTCTCTCTAAAATTCCAGTAGAGTAGATCACATCGGG
196 GTGGAGCAGATTAAAA-C-CAGAATCTTATCTCTCTAAAATTCCAG-AGAGCAGAACACATCGAG
* *
10155128 TCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTCAAG-AAAGCAAGTCTCATCCCTCC-GAAATT
258 TCTTATCTCCCTAAAGTTGCAGTGGAGCAGACT-AAGTAAA-CAAGTATCAT-CCTCCTGAAATT
** * * * * *
10155191 GCAGTGAGGTTGACTAAATAAAGCAAATCCTATCTCTCTAAAGTTGTAGTGGGGTGGATTAGAA-
320 GCAGTGAGGAAGACTAAAGAAAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTAGATTA-AAC
* ** * * * * *
10155255 TGATGGGTCTTAACTCACTG-AGATTGCGGTAGAGTAGA-T-CACATCAA
384 CGAT-AATCCTAACTCACTGAAG-TTCCAGTAGAGCAGATTAAACATCAA
*
10155302 AT-TCATCT-T-T-AAGTTGCAGCAG-GTCAAATTGAAGCTATAAATCCTATCTCCCTGACA-TT
1 ATCTCATCTCTCTGAAGTTGCAG-AGAGT-AAATCGAA--TAT-AATCCTATCTCCCTGA-AGTT
10155361 GCAGTGGAG
60 GCAGTGGAG
10155370 TGGATCGAAG
Statistics
Matches: 410, Mismatches: 75, Indels: 32
0.79 0.15 0.06
Matches are distributed among these distances:
429 10 0.02
430 8 0.02
431 1 0.00
432 7 0.02
433 216 0.53
434 21 0.05
435 55 0.13
436 85 0.21
437 7 0.02
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (431 bp):
ATCTCATCTCTCTGAAGTTGCAGAGAGTAAATCGAATATAATCCTATCTCCCTGAAGTTGCAGTG
GAGCAGACTAAGCAAAAAAGTCTTATCCTCCTGAAATTGCAGTGAGGAAGACTGGAAATGACAAA
TCTTATCTCCCTGAAGCTGCAGTGGAGCAGATTAAAGCCAATAATCCTATCTCCCTGAAATTGCA
GTGGAGCAGATTAAAACCAGAATCTTATCTCTCTAAAATTCCAGAGAGCAGAACACATCGAGTCT
TATCTCCCTAAAGTTGCAGTGGAGCAGACTAAGTAAACAAGTATCATCCTCCTGAAATTGCAGTG
AGGAAGACTAAAGAAAGCAAATCCTATCTCCCTAAAGTTGCAGTGGAGTAGATTAAACCGATAAT
CCTAACTCACTGAAGTTCCAGTAGAGCAGATTAAACATCAA
Found at i:10160625 original size:44 final size:43
Alignment explanation
Indices: 10160577--10160670 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 43
10160567 TCATGTTCTA
* * *
10160577 TAGCGGCGTTTGTGGAAAAAAAAGCCGTTAAAGAACATTA-CTTT
1 TAGCGGCGCTTGTGG-AAAAAAAGCCGCTAAAGAACATGAGC-TT
* **
10160621 TAGCGGCGCTTGTGGAGAAAGCGCCGCTAAAGAACATGAGCTT
1 TAGCGGCGCTTGTGGAAAAAAAGCCGCTAAAGAACATGAGCTT
10160664 TAGCGGC
1 TAGCGGC
10160671 ATTTATTGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
43 28 0.65
44 15 0.35
ACGTcount: A:0.31, C:0.18, G:0.29, T:0.22
Consensus pattern (43 bp):
TAGCGGCGCTTGTGGAAAAAAAGCCGCTAAAGAACATGAGCTT
Found at i:10160666 original size:43 final size:43
Alignment explanation
Indices: 10160550--10160670 Score: 118
Period size: 44 Copynumber: 2.8 Consensus size: 43
10160540 GCGTTTTTAT
** * * *
10160550 AAAAGCGCCGCTAAAGTTCATGTTCTATAGCGGCGTTTGTGGAA
1 AAAAGCGCCGCTAAAGAACATG-ACTTTAGCGGCGCTTGTGGAA
** * *
10160594 AAAAAAGCCGTTAAAGAACATTACTTTTAGCGGCGCTTGTGG-A
1 AAAAGCGCCGCTAAAGAACATGAC-TTTAGCGGCGCTTGTGGAA
*
10160637 GAAAGCGCCGCTAAAGAACATGAGCTTTAGCGGC
1 AAAAGCGCCGCTAAAGAACATGA-CTTTAGCGGC
10160671 ATTTATTGGT
Statistics
Matches: 61, Mismatches: 14, Indels: 5
0.76 0.17 0.06
Matches are distributed among these distances:
43 29 0.48
44 32 0.52
ACGTcount: A:0.31, C:0.19, G:0.26, T:0.23
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATGACTTTAGCGGCGCTTGTGGAA
Found at i:10160750 original size:85 final size:84
Alignment explanation
Indices: 10160645--10160845 Score: 208
Period size: 85 Copynumber: 2.4 Consensus size: 84
10160635 GAGAAAGCGC
* * * ** *
10160645 CGCTAAAGAACATGAGCTTTAGCGGCATTTATTG-GTATGCACCACTAAAGGTCATGTTCTTTAG
1 CGCTAAAGAACATGACCTTTAGCGGCATTTATTGAGGAAGCACCACTAAAGAACATGATCTTTAG
10160709 CAGCGTTTGTTGTAACAGCAA
66 CAGCGTTT-TTGTAA-AGCAA
* * * * *
10160730 CGCTAAAGAACATTACCTTTAACGGCGTTT-CTGAGGAAGCACCGCTAAAGAACATGATCTTTAG
1 CGCTAAAGAACATGACCTTTAGCGGCATTTATTGAGGAAGCACCACTAAAGAACATGATCTTTAG
* * * * **
10160794 CGGTGTTTTTTTGAAGCGC
66 CAGCGTTTTTGTAAAGCAA
*
10160813 CGTTAAAGAACATGACCTTTAGCGGCATTTATT
1 CGCTAAAGAACATGACCTTTAGCGGCATTTATT
10160846 TTTGTAAACG
Statistics
Matches: 92, Mismatches: 22, Indels: 5
0.77 0.18 0.04
Matches are distributed among these distances:
83 29 0.32
84 7 0.08
85 56 0.61
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.30
Consensus pattern (84 bp):
CGCTAAAGAACATGACCTTTAGCGGCATTTATTGAGGAAGCACCACTAAAGAACATGATCTTTAG
CAGCGTTTTTGTAAAGCAA
Found at i:10160782 original size:42 final size:41
Alignment explanation
Indices: 10160605--10160838 Score: 141
Period size: 42 Copynumber: 5.6 Consensus size: 41
10160595 AAAAAGCCGT
* * * * *
10160605 TAAAGAACATTACTTTTAGCGGCGCTTGTGGAGAAAGCGCCGC
1 TAAAGAACATGACCTTTAGCGGCG-TT-TTGAGGAAGCACCGC
* * * * *
10160648 TAAAGAACATGAGCTTTAGCGGCATTTATTG-GTATGCACCAC
1 TAAAGAACATGACCTTTAGCGGC-GTT-TTGAGGAAGCACCGC
** ** * *
10160690 TAAAGGTCATGTTCTTTAGCAGCGTTTGTTGTA--ACAGCAACGC
1 TAAAGAACATGACCTTTAGCGGCG-TT-TTG-AGGA-AGCACCGC
* *
10160733 TAAAGAACATTACCTTTAACGGCGTTTCTGAGGAAGCACCGC
1 TAAAGAACATGACCTTTAGCGGCGTTT-TGAGGAAGCACCGC
* * *** * *
10160775 TAAAGAACATGATCTTTAGCGGTGTTTTTTTGAAGCGCCGT
1 TAAAGAACATGACCTTTAGCGGCGTTTTGAGGAAGCACCGC
10160816 TAAAGAACATGACCTTTAGCGGC
1 TAAAGAACATGACCTTTAGCGGC
10160839 ATTTATTTTT
Statistics
Matches: 144, Mismatches: 39, Indels: 18
0.72 0.19 0.09
Matches are distributed among these distances:
41 32 0.22
42 65 0.45
43 47 0.33
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.28
Consensus pattern (41 bp):
TAAAGAACATGACCTTTAGCGGCGTTTTGAGGAAGCACCGC
Found at i:10163632 original size:38 final size:38
Alignment explanation
Indices: 10163551--10163665 Score: 115
Period size: 38 Copynumber: 3.0 Consensus size: 38
10163541 ATATTGGGGG
* **
10163551 CGGTTATCTATTGGTCATTCGGGGTGACACTGTGTTGA
1 CGGTTATCTATTGGTCCTTCGGGGTGACACCCTGTTGA
* * * *
10163589 TGGTTATTTATTGGTCCTTCGGGGTGATACCCTTTTGA
1 CGGTTATCTATTGGTCCTTCGGGGTGACACCCTGTTGA
* ** *
10163627 CGGTTATCTACTT-GTCCTTCGAGGCAAAACCCTGTTGA
1 CGGTTATCTA-TTGGTCCTTCGGGGTGACACCCTGTTGA
10163665 C
1 C
10163666 AATATATAGA
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
38 60 0.97
39 2 0.03
ACGTcount: A:0.17, C:0.20, G:0.26, T:0.37
Consensus pattern (38 bp):
CGGTTATCTATTGGTCCTTCGGGGTGACACCCTGTTGA
Found at i:10169956 original size:25 final size:24
Alignment explanation
Indices: 10169926--10170009 Score: 98
Period size: 25 Copynumber: 3.4 Consensus size: 24
10169916 GAGTTTGACC
*
10169926 CAATCTAAAGTTTCTATCATTTTCA
1 CAATCTATAGTTTCTAT-ATTTTCA
*
10169951 CAATCTATAGTCTTCTATAGTTTCA
1 CAATCTATAGT-TTCTATATTTTCA
* *
10169976 TAATCTATAGTTTCTATTTTTTTCA
1 CAATCTATAGTTTCTA-TATTTTCA
10170001 C-ATCTATAG
1 CAATCTATAG
10170010 ATCACTTACG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
24 13 0.25
25 32 0.63
26 6 0.12
ACGTcount: A:0.29, C:0.18, G:0.06, T:0.48
Consensus pattern (24 bp):
CAATCTATAGTTTCTATATTTTCA
Found at i:10174072 original size:100 final size:100
Alignment explanation
Indices: 10173951--10174147 Score: 313
Period size: 100 Copynumber: 2.0 Consensus size: 100
10173941 TATTATCAGT
* * * * *
10173951 TGCAAGTAAAAGAGGTGGATATTCTGAAAATAGCCTTTAGGACTCGGTATGGCCACTACAAATTT
1 TGCAAGTAAAAGAGGTAGATATTCTAAAAACAACCTTTAGGACTCGGTATGGCCACTACAAATTC
10174016 TTAATGATGCCCTTCGAACTTACAAATGCTCCTGC
66 TTAATGATGCCCTTCGAACTTACAAATGCTCCTGC
*
10174051 TGCAAGTAAAAGAGGTAGATATTCTAAAAACAACCTTTAGGACTCGGTATGGGCACTACAAATTC
1 TGCAAGTAAAAGAGGTAGATATTCTAAAAACAACCTTTAGGACTCGGTATGGCCACTACAAATTC
* * *
10174116 TTAGTGATGCCCTTCGAATTTACAAATTCTCC
66 TTAATGATGCCCTTCGAACTTACAAATGCTCC
10174148 CACTGCTTTC
Statistics
Matches: 88, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
100 88 1.00
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.29
Consensus pattern (100 bp):
TGCAAGTAAAAGAGGTAGATATTCTAAAAACAACCTTTAGGACTCGGTATGGCCACTACAAATTC
TTAATGATGCCCTTCGAACTTACAAATGCTCCTGC
Found at i:10177074 original size:26 final size:26
Alignment explanation
Indices: 10177045--10177125 Score: 83
Period size: 26 Copynumber: 3.1 Consensus size: 26
10177035 AACACACCAA
*
10177045 TATCGTGGCAAAGTTGCCCGTAATAG
1 TATCGTGGCAAAGTTGCCAGTAATAG
** * *
10177071 TATCGCAGCAAAGCTGCCAGT-ATCAA
1 TATCGTGGCAAAGTTGCCAGTAAT-AG
* *
10177097 TATCGTGACAAAGTTGCCAGTAACAG
1 TATCGTGGCAAAGTTGCCAGTAATAG
10177123 TAT
1 TAT
10177126 ACTTCCTCCA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
25 2 0.05
26 39 0.93
27 1 0.02
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.25
Consensus pattern (26 bp):
TATCGTGGCAAAGTTGCCAGTAATAG
Found at i:10184813 original size:26 final size:26
Alignment explanation
Indices: 10184777--10184853 Score: 127
Period size: 26 Copynumber: 3.0 Consensus size: 26
10184767 CACCAATGTA
* * *
10184777 GCAGCAAAGCTACCTGTAATAGTATC
1 GCAGCAAAGCTGCCAGTAACAGTATC
10184803 GCAGCAAAGCTGCCAGTAACAGTATC
1 GCAGCAAAGCTGCCAGTAACAGTATC
10184829 GCAGCAAAGCTGCCAGTAACAGTAT
1 GCAGCAAAGCTGCCAGTAACAGTAT
10184854 ACTTCCTCCA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.35, C:0.25, G:0.22, T:0.18
Consensus pattern (26 bp):
GCAGCAAAGCTGCCAGTAACAGTATC
Found at i:10186931 original size:23 final size:23
Alignment explanation
Indices: 10186899--10186942 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
10186889 ACTAAGGGTG
*
10186899 TAATATCCCAAAAATTACTACTA
1 TAATACCCCAAAAATTACTACTA
10186922 TAATACCCCAAAAATTACTAC
1 TAATACCCCAAAAATTACTAC
10186943 AGTAAGAAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.48, C:0.25, G:0.00, T:0.27
Consensus pattern (23 bp):
TAATACCCCAAAAATTACTACTA
Found at i:10190264 original size:7 final size:7
Alignment explanation
Indices: 10190254--10190283 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
10190244 ATTTCTCACA
10190254 TCATCCC
1 TCATCCC
10190261 TCATCCC
1 TCATCCC
10190268 TCATCCC
1 TCATCCC
10190275 TCATCCC
1 TCATCCC
10190282 TC
1 TC
10190284 TCATCTCTTA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.13, C:0.57, G:0.00, T:0.30
Consensus pattern (7 bp):
TCATCCC
Found at i:10211606 original size:10 final size:10
Alignment explanation
Indices: 10211591--10211624 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
10211581 TTTACCTATA
*
10211591 CAAAACATGC
1 CAAAACATAC
*
10211601 CAAAACAAAC
1 CAAAACATAC
10211611 CAAAACATAC
1 CAAAACATAC
10211621 CAAA
1 CAAA
10211625 TAACTTTCAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.62, C:0.29, G:0.03, T:0.06
Consensus pattern (10 bp):
CAAAACATAC
Found at i:10216283 original size:18 final size:18
Alignment explanation
Indices: 10216234--10216284 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 18
10216224 TCTTTATCAT
*
10216234 TTAATAACAACATTATAATA
1 TTAA-AACAACA-TATAAAA
*
10216254 TATAAATC-ACATATAAAA
1 T-TAAAACAACATATAAAA
10216272 TTAAAACAACATA
1 TTAAAACAACATA
10216285 AAGCTTTAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 6
0.74 0.09 0.17
Matches are distributed among these distances:
17 5 0.19
18 12 0.46
19 3 0.12
20 3 0.12
21 3 0.12
ACGTcount: A:0.59, C:0.12, G:0.00, T:0.29
Consensus pattern (18 bp):
TTAAAACAACATATAAAA
Found at i:10221821 original size:17 final size:17
Alignment explanation
Indices: 10221796--10221829 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
10221786 TAAGAATCAG
10221796 ATTGAGAAAATTATTTA
1 ATTGAGAAAATTATTTA
* *
10221813 ATTGGGAAATTTATTTA
1 ATTGAGAAAATTATTTA
10221830 TTTATTTAAA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (17 bp):
ATTGAGAAAATTATTTA
Found at i:10222846 original size:21 final size:21
Alignment explanation
Indices: 10222822--10222862 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
10222812 GATACATGGT
10222822 AAAAGGTATCAATACTTTTTG
1 AAAAGGTATCAATACTTTTTG
* * *
10222843 AAAATGTATCGATATTTTTT
1 AAAAGGTATCAATACTTTTT
10222863 ATGATTGTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.37, C:0.07, G:0.12, T:0.44
Consensus pattern (21 bp):
AAAAGGTATCAATACTTTTTG
Found at i:10223195 original size:20 final size:20
Alignment explanation
Indices: 10223167--10223206 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
10223157 GAACTTTGTC
10223167 CAAAAATTTTCTAAC-TGTT
1 CAAAAATTTTCTAACATGTT
10223186 CAAAACATTTTCTAACATGTT
1 CAAAA-ATTTTCTAACATGTT
10223207 TGGAAGTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 5 0.26
20 10 0.53
21 4 0.21
ACGTcount: A:0.38, C:0.17, G:0.05, T:0.40
Consensus pattern (20 bp):
CAAAAATTTTCTAACATGTT
Found at i:10225828 original size:45 final size:45
Alignment explanation
Indices: 10225779--10225898 Score: 163
Period size: 45 Copynumber: 2.7 Consensus size: 45
10225769 ATAGTACTCA
10225779 GTGAAATTAGCACATAGCAACCACCTTTAT-ACTCAATGGTA-CCTG
1 GTGAAATTAGCACATAGCAACCACCTTTATAAC-CAATGGTATCC-G
* * * *
10225824 GTGAAATCAGTACATAGCAACCACCTATATAACCATTGGTATCCG
1 GTGAAATTAGCACATAGCAACCACCTTTATAACCAATGGTATCCG
*
10225869 GTGAAATTAGCACATAGAAACCACCTTTAT
1 GTGAAATTAGCACATAGCAACCACCTTTAT
10225899 TTTCATTAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
45 61 0.94
46 4 0.06
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.26
Consensus pattern (45 bp):
GTGAAATTAGCACATAGCAACCACCTTTATAACCAATGGTATCCG
Found at i:10225922 original size:90 final size:90
Alignment explanation
Indices: 10225779--10225943 Score: 215
Period size: 90 Copynumber: 1.8 Consensus size: 90
10225769 ATAGTACTCA
* ** *
10225779 GTGAAATTAGCACATAGCAACCACCTTTATACTCAATGGTACCTGGTGAAATCAGTACATAGCAA
1 GTGAAATTAGCACATAGAAACCACCTTTATACTCAATAATACCTGGTGAAATCAGCACATAGCAA
10225844 CCACCTATATAACCATTGGTATCCG
66 CCACCTATATAACCATTGGTATCCG
** * * *
10225869 GTGAAATTAGCACATAGAAACCACCTTTATTTTCATTAATATC-GAGTGGAATCAGCACATAGCA
1 GTGAAATTAGCACATAGAAACCACCTTTATACTCAATAATACCTG-GTGAAATCAGCACATAGCA
* *
10225933 TCTACCTATAT
65 ACCACCTATAT
10225944 TTCCAACGAT
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
89 1 0.02
90 62 0.98
ACGTcount: A:0.35, C:0.22, G:0.15, T:0.28
Consensus pattern (90 bp):
GTGAAATTAGCACATAGAAACCACCTTTATACTCAATAATACCTGGTGAAATCAGCACATAGCAA
CCACCTATATAACCATTGGTATCCG
Found at i:10231422 original size:50 final size:50
Alignment explanation
Indices: 10231358--10231499 Score: 173
Period size: 50 Copynumber: 2.8 Consensus size: 50
10231348 TATTATCATT
*
10231358 TGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCA-AACT-TT
1 TGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATAA-TATC
* * *
10231407 TGAGTTCACGTAGTAG-CTTGCACATAGTACTACACATGTGACCATTAATATC
1 TGA-TACACGTAGTAGCCTT-CACATAGTACTACACACGTGATCA-TAATATC
* *
10231459 TGATACACATAGTAGCCTGCACATAGTACTACACACGTGAT
1 TGATACACGTAGTAGCCTTCACATAGTACTACACACGTGAT
10231500 TGAAGCTATC
Statistics
Matches: 78, Mismatches: 9, Indels: 10
0.80 0.09 0.10
Matches are distributed among these distances:
49 6 0.08
50 33 0.42
51 31 0.40
52 8 0.10
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.28
Consensus pattern (50 bp):
TGATACACGTAGTAGCCTTCACATAGTACTACACACGTGATCATAATATC
Found at i:10231498 original size:101 final size:100
Alignment explanation
Indices: 10231358--10231599 Score: 292
Period size: 101 Copynumber: 2.4 Consensus size: 100
10231348 TATTATCATT
* * **
10231358 TGATACACGTAGTAGCCTTCACATAGTACTACACACGTGA-TCAAACT-TTTGAGTTCACG-TAG
1 TGATACACATAGTAGCCTACACATAGTACTACACACGTGATTCAAACTATCCG-G-T-ACGATAG
* *
10231420 TAGCTTGCACATAGTACTACACATGTGACCATTAATATC
63 TAGCCTGCACATAGTACTACACATGCGACCATTAAT-TC
* * *
10231459 TGATACACATAGTAGCCTGCACATAGTACTACACACGTGATTGAAGCTATCCGGTACGTATAGTA
1 TGATACACATAGTAGCCTACACATAGTACTACACACGTGATTCAAACTATCCGGTACG-ATAGTA
* * *
10231524 GCCTGCGCATAGTACTACACATGCGACCTTTCATTC
65 GCCTGCACATAGTACTACACATGCGACCATTAATTC
* *
10231560 CGGTACACATAGTAGCCTACACATAGTACTACACACGTGA
1 TGATACACATAGTAGCCTACACATAGTACTACACACGTGA
10231600 CCATCACTGA
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
100 3 0.02
101 78 0.63
102 40 0.33
103 2 0.02
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (100 bp):
TGATACACATAGTAGCCTACACATAGTACTACACACGTGATTCAAACTATCCGGTACGATAGTAG
CCTGCACATAGTACTACACATGCGACCATTAATTC
Found at i:10234678 original size:22 final size:20
Alignment explanation
Indices: 10234649--10234701 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 20
10234639 TAATATTTTT
10234649 AGGT-TTCATAGTTAGTGCTCA
1 AGGTATTCATAGTTAGTG--CA
10234670 AGGTATTCATATAGTTAGTGCA
1 AGGTATTC--ATAGTTAGTGCA
10234692 AGGTATTCAT
1 AGGTATTCAT
10234702 GTCGACGAGG
Statistics
Matches: 29, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
20 2 0.07
21 4 0.14
22 13 0.45
24 10 0.34
ACGTcount: A:0.28, C:0.11, G:0.23, T:0.38
Consensus pattern (20 bp):
AGGTATTCATAGTTAGTGCA
Found at i:10234685 original size:24 final size:22
Alignment explanation
Indices: 10234656--10234701 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 22
10234646 TTTAGGTTTC
10234656 ATAGTTAGTGCTCAAGGTATTCAT
1 ATAGTTAGTG--CAAGGTATTCAT
10234680 ATAGTTAGTGCAAGGTATTCAT
1 ATAGTTAGTGCAAGGTATTCAT
10234702 GTCGACGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 12 0.55
24 10 0.45
ACGTcount: A:0.30, C:0.11, G:0.22, T:0.37
Consensus pattern (22 bp):
ATAGTTAGTGCAAGGTATTCAT
Found at i:10250994 original size:101 final size:102
Alignment explanation
Indices: 10250878--10251060 Score: 280
Period size: 101 Copynumber: 1.8 Consensus size: 102
10250868 AGTGATGGTC
*** *
10250878 ACGTGTGTAGTACTATGTGCGGGCTACTACGTGTACCAGA-A-TGATAGGTCGCATGTGTAGTAC
1 ACGTGTGTAGTACTATGTAAAGGCTACTACGTGTACCAGATAGTGAT-GGTCACATGTGTAGTAC
10250941 TATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATT
65 TATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATT
* *
10250979 ACGTGTGTAGTACTATGTAAAGGCTACTACGTGTATCAGATAGTGATGGTCACATGTTTAGTACT
1 ACGTGTGTAGTACTATGTAAAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTACT
*
10251044 ATGTTCAGGCTACTATG
66 ATGTGCAGGCTACTATG
10251061 TGAACCGGTA
Statistics
Matches: 73, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
101 36 0.49
102 33 0.45
103 4 0.05
ACGTcount: A:0.25, C:0.17, G:0.26, T:0.32
Consensus pattern (102 bp):
ACGTGTGTAGTACTATGTAAAGGCTACTACGTGTACCAGATAGTGATGGTCACATGTGTAGTACT
ATGTGCAGGCTACTATGCGTACCAGATAGCTTCGATT
Found at i:10251041 original size:51 final size:51
Alignment explanation
Indices: 10250868--10251058 Score: 212
Period size: 51 Copynumber: 3.8 Consensus size: 51
10250858 TGAAAGTAAA
* *
10250868 AGTGATGGTCACGTGTGTAGTACTATGTGCGGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
* * *
10250918 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
* ** *
10250969 AGCTTCGAT--T-ACGTGTGTAGTACTATGTAAAGGCTACTACGTGTATCAGAT
1 AG--T-GATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
* *
10251020 AGTGATGGTCACATGTTTAGTACTATGTTCAGGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
10251059 TGTGAACCGG
Statistics
Matches: 116, Mismatches: 16, Indels: 17
0.78 0.11 0.11
Matches are distributed among these distances:
48 3 0.03
49 5 0.04
50 41 0.35
51 62 0.53
52 1 0.01
54 1 0.01
55 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
Found at i:10251145 original size:46 final size:43
Alignment explanation
Indices: 10251064--10251167 Score: 111
Period size: 46 Copynumber: 2.3 Consensus size: 43
10251054 TACTATGTGA
*
10251064 ACCGGTATCATTAATTATAAGGTGGTCGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTCGCTATGTGCTGAAT-CC
* * *
10251107 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTCGCTATGTGCTGAATCC
10251153 ACCGTGTATCTATTA
1 ACCG-GTATC-ATTA
10251168 TTATTCTGAA
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
43 5 0.10
44 11 0.22
45 2 0.04
46 26 0.52
47 6 0.12
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTCGCTATGTGCTGAATCC
Found at i:10251306 original size:16 final size:16
Alignment explanation
Indices: 10251285--10251316 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
10251275 TGATTGAAAG
*
10251285 TGAAAAAGTGAAATTA
1 TGAAAAAGTAAAATTA
10251301 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
10251317 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.16, T:0.25
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:10253808 original size:15 final size:15
Alignment explanation
Indices: 10253788--10253818 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10253778 ACATCTACCG
*
10253788 AAATAGATGAATTAC
1 AAATAGACGAATTAC
10253803 AAATAGACGAATTAC
1 AAATAGACGAATTAC
10253818 A
1 A
10253819 TACAACATCC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.10, G:0.13, T:0.23
Consensus pattern (15 bp):
AAATAGACGAATTAC
Found at i:10262116 original size:21 final size:21
Alignment explanation
Indices: 10262092--10262131 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
10262082 AGGTTTCTTC
*
10262092 TTTTCCTATTATTTTTATTAT
1 TTTTACTATTATTTTTATTAT
* *
10262113 TTTTATTTTTATTTTTATT
1 TTTTACTATTATTTTTATT
10262132 TTTCCCAAAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.17, C:0.05, G:0.00, T:0.78
Consensus pattern (21 bp):
TTTTACTATTATTTTTATTAT
Done.