Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 32 of 163
Found at i:10262118 original size:6 final size:6
Alignment explanation
Indices: 10262109--10262134 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
10262099 ATTATTTTTA
10262109 TTATTT TTATTT TTATTT TTATTT TT
1 TTATTT TTATTT TTATTT TTATTT TT
10262135 CCCAAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTATTT
Found at i:10268851 original size:17 final size:17
Alignment explanation
Indices: 10268829--10268861 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
10268819 ATTCTTTGAG
10268829 AATTGCCAC-AGCATTTC
1 AATTGCC-CTAGCATTTC
10268846 AATTGCCCTAGCATTT
1 AATTGCCCTAGCATTT
10268862 TTTACTCATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 1 0.07
17 14 0.93
ACGTcount: A:0.27, C:0.27, G:0.12, T:0.33
Consensus pattern (17 bp):
AATTGCCCTAGCATTTC
Found at i:10270596 original size:20 final size:20
Alignment explanation
Indices: 10270562--10270601 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
10270552 GAACTTTGTC
*
10270562 CAAAAATTTTCTAAG-TGTT
1 CAAAAATTATCTAAGATGTT
10270581 CAAAACATTATCTAAGATGTT
1 CAAAA-ATTATCTAAGATGTT
10270602 TGGAAGTCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 5 0.28
20 9 0.50
21 4 0.22
ACGTcount: A:0.40, C:0.12, G:0.10, T:0.38
Consensus pattern (20 bp):
CAAAAATTATCTAAGATGTT
Found at i:10276084 original size:18 final size:17
Alignment explanation
Indices: 10276062--10276106 Score: 54
Period size: 18 Copynumber: 2.5 Consensus size: 17
10276052 TTAATATAAC
10276062 ATTAATAATTAAATTATT
1 ATTAATAATTAAA-TATT
* *
10276080 GTTAATAAAATAAATATT
1 ATTAAT-AATTAAATATT
10276098 ATTAATAAT
1 ATTAATAAT
10276107 ATGTTACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
17 2 0.09
18 14 0.64
19 6 0.27
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.44
Consensus pattern (17 bp):
ATTAATAATTAAATATT
Found at i:10280656 original size:14 final size:15
Alignment explanation
Indices: 10280628--10280657 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
10280618 CTAGGTTTGG
10280628 ACAGTGCAGCCTCGA
1 ACAGTGCAGCCTCGA
10280643 ACAGTGCA-CCTCGA
1 ACAGTGCAGCCTCGA
10280657 A
1 A
10280658 GTTCTGCACC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.30, C:0.33, G:0.23, T:0.13
Consensus pattern (15 bp):
ACAGTGCAGCCTCGA
Found at i:10283034 original size:12 final size:12
Alignment explanation
Indices: 10283017--10283041 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10283007 ATACTTCACC
10283017 CCATAAACTTGT
1 CCATAAACTTGT
10283029 CCATAAACTTGT
1 CCATAAACTTGT
10283041 C
1 C
10283042 TAGTTGTATC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.28, G:0.08, T:0.32
Consensus pattern (12 bp):
CCATAAACTTGT
Found at i:10284338 original size:2 final size:2
Alignment explanation
Indices: 10284331--10284357 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
10284321 ACCTTATGTT
10284331 AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC A
10284358 TATATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:10285025 original size:24 final size:22
Alignment explanation
Indices: 10284998--10285048 Score: 57
Period size: 24 Copynumber: 2.2 Consensus size: 22
10284988 TAGGGCCAGT
*
10284998 CCAACGGCCAGAAACTGCCATAAG
1 CCAACAGCCAGAAAC-GCC-TAAG
* *
10285022 CCAACAGCTAGAAACGGCTAAG
1 CCAACAGCCAGAAACGCCTAAG
10285044 CCAAC
1 CCAAC
10285049 CAACGATCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 9 0.38
23 2 0.08
24 13 0.54
ACGTcount: A:0.39, C:0.33, G:0.20, T:0.08
Consensus pattern (22 bp):
CCAACAGCCAGAAACGCCTAAG
Found at i:10285848 original size:87 final size:86
Alignment explanation
Indices: 10285697--10285859 Score: 220
Period size: 87 Copynumber: 1.9 Consensus size: 86
10285687 TTAAATTTAG
* *
10285697 TGAATTCATCAAGTCTGTCTCCATAGGACCACCCAAACTTTGGGATATGAACTCGTTAAAAGTAA
1 TGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTTTGGGATATGAACTCATTAAAAGTAA
10285762 GAAACTCAACCTCATATGTCGA
66 G-AACTCAACCTCATATGTCGA
* * * * * *
10285784 TGAATTCATCAAGTTTGTCTTAATAGGACCACCTAAA-TTCTGGGCTATGAATTCATTAAGAGTA
1 TGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTT-TGGGATATGAACTCATTAAAAGTA
*
10285848 AGAACTTAACCT
65 AGAACTCAACCT
10285860 TCTGCATGTA
Statistics
Matches: 66, Mismatches: 9, Indels: 3
0.85 0.12 0.04
Matches are distributed among these distances:
86 11 0.17
87 55 0.83
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.29
Consensus pattern (86 bp):
TGAATTCATCAAGTCTGTCTCAATAGGACCACCCAAACTTTGGGATATGAACTCATTAAAAGTAA
GAACTCAACCTCATATGTCGA
Found at i:10294897 original size:43 final size:43
Alignment explanation
Indices: 10294842--10295048 Score: 229
Period size: 43 Copynumber: 4.8 Consensus size: 43
10294832 TTATGTGGGA
* * * *
10294842 AAACGCCGCTATAGAACATGATCTTTAGCGGCGCCTTTCATGC
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
** * * * *
10294885 AAACGTCACTATAGAACATGATCTTTAACAGCGTTTTTCCTAC
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
* * *
10294928 GAACACCGCTATAGAACATGATATTTAGCGACGCTTTTCCTAC
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
* *
10294971 AAACACCGCTATAGAACATTATCTTTAGCGGCGGTTTAT--TAC
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTT-TCCTAC
* * *
10295013 AAACACCGCTAAAGAACATTATCTTTAGTGGCGCTT
1 AAACACCGCTATAGAACATGATCTTTAGCGGCGCTT
10295049 CTTTTACAAA
Statistics
Matches: 138, Mismatches: 25, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
42 36 0.26
43 101 0.73
44 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
AAACACCGCTATAGAACATGATCTTTAGCGGCGCTTTTCCTAC
Found at i:10295070 original size:43 final size:42
Alignment explanation
Indices: 10294940--10295070 Score: 111
Period size: 43 Copynumber: 3.1 Consensus size: 42
10294930 ACACCGCTAT
* * * * * *
10294940 AGAACATGATATTTAGCGACGCTTT-TCCTACAAACACCGCTAT
1 AGAACATTATCTTTAGCGGCGCTTTAT--TACAAACACCACAAA
* * *
10294983 AGAACATTATCTTTAGCGGCGGTTTATTACAAACACCGCTAA
1 AGAACATTATCTTTAGCGGCGCTTTATTACAAACACCACAAA
* * **
10295025 AGAACATTATCTTTAGTGGCGCTTCTTTTACAAATGCCACAAA
1 AGAACATTATCTTTAGCGGCGCTT-TATTACAAACACCACAAA
10295068 AGA
1 AGA
10295071 CCATGTTCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
42 36 0.49
43 37 0.50
44 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.15, T:0.29
Consensus pattern (42 bp):
AGAACATTATCTTTAGCGGCGCTTTATTACAAACACCACAAA
Found at i:10297025 original size:92 final size:92
Alignment explanation
Indices: 10296893--10297075 Score: 269
Period size: 92 Copynumber: 2.0 Consensus size: 92
10296883 GGAAGCTTAA
* *
10296893 GTTAAAGCAAATTATTTACGAAAATGTGATACTTAAAAAAAAATT-AGGTGCAAAAACATAGTGT
1 GTTAAAGCAAATGATTTACGAAAACGTGATACTT-AAAAAAAATTGAGGTGCAAAAACATAGTGT
10296957 TAGAAAACAGTTATTATTTTGGAAAACC
65 TAGAAAACAGTTATTATTTTGGAAAACC
* * * * *
10296985 GTTAAAGTAAATGATTTACGAAAACGTGATATTTTAAAAAAATTGAGGTGCGAAAACGTAGTGTT
1 GTTAAAGCAAATGATTTACGAAAACGTGATACTTAAAAAAAATTGAGGTGCAAAAACATAGTGTT
* *
10297050 AGAAAATAGTTATTGTTTTGGAAAAC
66 AGAAAACAGTTATTATTTTGGAAAAC
10297076 TGTGTTCTAC
Statistics
Matches: 81, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
91 9 0.11
92 72 0.89
ACGTcount: A:0.44, C:0.07, G:0.18, T:0.31
Consensus pattern (92 bp):
GTTAAAGCAAATGATTTACGAAAACGTGATACTTAAAAAAAATTGAGGTGCAAAAACATAGTGTT
AGAAAACAGTTATTATTTTGGAAAACC
Found at i:10297897 original size:27 final size:27
Alignment explanation
Indices: 10297866--10298036 Score: 152
Period size: 27 Copynumber: 6.3 Consensus size: 27
10297856 TATAACAGTC
*
10297866 ATTTTACCCTAT-GGGGTAATTTCGATA
1 ATTTTACCCTTTAGGGGT-ATTTCGATA
* * * *
10297893 ATTTTATCCTTT-GATGGTATTTTGGTA
1 ATTTTACCCTTTAG-GGGTATTTCGATA
* *
10297920 ATTTTATCCTTTGGGGGTATTTC-AGTA
1 ATTTTACCCTTTAGGGGTATTTCGA-TA
*
10297947 ATTTTACCCTTTAGGGGTATTTCAATA
1 ATTTTACCCTTTAGGGGTATTTCGATA
* * *
10297974 ATTTTACCC-ATCGAGGGTATTTCGGTA
1 ATTTTACCCTTTAG-GGGTATTTCGATA
* * *
10298001 ATTTTACCATTCAGGGGTATTTCAATA
1 ATTTTACCCTTTAGGGGTATTTCGATA
10298028 ATTTTACCC
1 ATTTTACCC
10298037 ATCGAGGGTA
Statistics
Matches: 117, Mismatches: 21, Indels: 12
0.78 0.14 0.08
Matches are distributed among these distances:
26 2 0.02
27 109 0.93
28 6 0.05
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (27 bp):
ATTTTACCCTTTAGGGGTATTTCGATA
Found at i:10297966 original size:54 final size:53
Alignment explanation
Indices: 10297866--10298049 Score: 185
Period size: 54 Copynumber: 3.4 Consensus size: 53
10297856 TATAACAGTC
* * ***
10297866 ATTTTACCCTAT--GGGGTAATTTCGATAATTTTATCCTTT-GATGGTATTTTGGTA
1 ATTTTACCC-ATCGGGGGT-ATTTCG-TAATTTTACCCTTTAG-GGGTATTTCAATA
* * *
10297920 ATTTTATCCTTTGGGGGTATTTCAGTAATTTTACCCTTTAGGGGTATTTCAATA
1 ATTTTACCCATCGGGGGTATTTC-GTAATTTTACCCTTTAGGGGTATTTCAATA
* * *
10297974 ATTTTACCCATCGAGGGTATTTCGGTAATTTTACCATTCAGGGGTATTTCAATA
1 ATTTTACCCATCGGGGGTATTTC-GTAATTTTACCCTTTAGGGGTATTTCAATA
*
10298028 ATTTTACCCATCGAGGGTATTT
1 ATTTTACCCATCGGGGGTATTT
10298050 TGGTCATTTA
Statistics
Matches: 112, Mismatches: 14, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
53 1 0.01
54 104 0.93
55 7 0.06
ACGTcount: A:0.23, C:0.14, G:0.18, T:0.44
Consensus pattern (53 bp):
ATTTTACCCATCGGGGGTATTTCGTAATTTTACCCTTTAGGGGTATTTCAATA
Found at i:10297993 original size:81 final size:81
Alignment explanation
Indices: 10297861--10298036 Score: 221
Period size: 81 Copynumber: 2.2 Consensus size: 81
10297851 AAGGGTATAA
* * * * * * *
10297861 CAGTCATTTTACCCTATGGGGTAATTTCGATAATTTTATCCTTTGATGGTATTTTGGTAATTTTA
1 CAGTAATTTTACCCTATGGGGTAATTTCAATAATTTTACCCATCGAGGGTATTTCGGTAATTTTA
**
10297926 TCC-TTTGGGGGTATTT
66 -CCATTCAGGGGTATTT
*
10297942 CAGTAATTTTACCCTTTAGGGGT-ATTTCAATAATTTTACCCATCGAGGGTATTTCGGTAATTTT
1 CAGTAATTTTACCCTAT-GGGGTAATTTCAATAATTTTACCCATCGAGGGTATTTCGGTAATTTT
10298006 ACCATTCAGGGGTATTT
65 ACCATTCAGGGGTATTT
*
10298023 CAATAATTTTACCC
1 CAGTAATTTTACCC
10298037 ATCGAGGGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
80 2 0.02
81 75 0.91
82 5 0.06
ACGTcount: A:0.23, C:0.15, G:0.18, T:0.44
Consensus pattern (81 bp):
CAGTAATTTTACCCTATGGGGTAATTTCAATAATTTTACCCATCGAGGGTATTTCGGTAATTTTA
CCATTCAGGGGTATTT
Found at i:10298045 original size:27 final size:28
Alignment explanation
Indices: 10297933--10298049 Score: 145
Period size: 27 Copynumber: 4.3 Consensus size: 28
10297923 TTATCCTTTG
* **
10297933 GGGGTATTTCAGTAATTTTACCC-TTTA
1 GGGGTATTTCAATAATTTTACCCATCGA
10297960 GGGGTATTTCAATAATTTTACCCATCGA
1 GGGGTATTTCAATAATTTTACCCATCGA
**
10297988 -GGGTATTTCGGTAATTTTA-CCATTC-A
1 GGGGTATTTCAATAATTTTACCCA-TCGA
10298014 GGGGTATTTCAATAATTTTACCCATCGA
1 GGGGTATTTCAATAATTTTACCCATCGA
10298042 -GGGTATTT
1 GGGGTATTT
10298050 TGGTCATTTA
Statistics
Matches: 78, Mismatches: 7, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
26 4 0.05
27 68 0.87
28 6 0.08
ACGTcount: A:0.25, C:0.15, G:0.20, T:0.40
Consensus pattern (28 bp):
GGGGTATTTCAATAATTTTACCCATCGA
Found at i:10298058 original size:27 final size:27
Alignment explanation
Indices: 10297866--10298058 Score: 135
Period size: 27 Copynumber: 7.1 Consensus size: 27
10297856 TATAACAGTC
*
10297866 ATTTTACCCTAT-G-GGGTAATTTCGATA
1 ATTTTACCC-ATCGAGGGT-ATTTCGGTA
* * * * *
10297893 ATTTTATCCTTTGATGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
* * * * *
10297920 ATTTTATCCTTTGGGGGTATTTCAGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
** **
10297947 ATTTTACCC-TTTAGGGGTATTTCAATA
1 ATTTTACCCATCGA-GGGTATTTCGGTA
10297974 ATTTTACCCATCGAGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGGTA
**
10298001 ATTTTA-CCATTC-AGGGGTATTTCAATA
1 ATTTTACCCA-TCGA-GGGTATTTCGGTA
* *
10298028 ATTTTACCCATCGAGGGTATTTTGGTC
1 ATTTTACCCATCGAGGGTATTTCGGTA
10298055 ATTT
1 ATTT
10298059 AACAAATTTT
Statistics
Matches: 135, Mismatches: 23, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
26 7 0.05
27 119 0.88
28 9 0.07
ACGTcount: A:0.23, C:0.14, G:0.19, T:0.45
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGGTA
Found at i:10304759 original size:33 final size:33
Alignment explanation
Indices: 10304701--10304791 Score: 175
Period size: 33 Copynumber: 2.8 Consensus size: 33
10304691 TATGATATAT
10304701 ATTTTTTATATTCTTTAAATG-TTATAAATTGC
1 ATTTTTTATATTCTTTAAATGTTTATAAATTGC
10304733 ATTTTTTATATTCTTTAAATGTTTATAAATTGC
1 ATTTTTTATATTCTTTAAATGTTTATAAATTGC
10304766 ATTTTTTATATTCTTTAAATGTTTAT
1 ATTTTTTATATTCTTTAAATGTTTAT
10304792 GTAAGTTATG
Statistics
Matches: 58, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 21 0.36
33 37 0.64
ACGTcount: A:0.30, C:0.05, G:0.05, T:0.59
Consensus pattern (33 bp):
ATTTTTTATATTCTTTAAATGTTTATAAATTGC
Found at i:10317219 original size:10 final size:10
Alignment explanation
Indices: 10317206--10317230 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
10317196 CAATGACCAC
10317206 GTTGACCTAT
1 GTTGACCTAT
10317216 GTTGACCTAT
1 GTTGACCTAT
10317226 GTTGA
1 GTTGA
10317231 TCAGTCGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.20, C:0.16, G:0.24, T:0.40
Consensus pattern (10 bp):
GTTGACCTAT
Found at i:10330636 original size:43 final size:41
Alignment explanation
Indices: 10330555--10330638 Score: 107
Period size: 43 Copynumber: 2.0 Consensus size: 41
10330545 TTTTATCCTA
* *
10330555 GAAAAAATGAATTTAAAAAGAGAAGATAATCTTAGGTTGTT
1 GAAAAAATGAATTTAAAAAGAGAAGATAAACATAGGTTGTT
*
10330596 GAAAAAA-GAATTTAAAAAGAGGAGAAGATAAACATGGGTTGTT
1 GAAAAAATGAATTT-AAAA-A-GAGAAGATAAACATAGGTTGTT
10330639 CGATTTACCT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
40 6 0.16
41 11 0.30
42 1 0.03
43 19 0.51
ACGTcount: A:0.50, C:0.02, G:0.23, T:0.25
Consensus pattern (41 bp):
GAAAAAATGAATTTAAAAAGAGAAGATAAACATAGGTTGTT
Found at i:10332056 original size:60 final size:60
Alignment explanation
Indices: 10331958--10332109 Score: 171
Period size: 60 Copynumber: 2.5 Consensus size: 60
10331948 GGAATGATCC
* * *
10331958 TGGTCTTAATGATAAGAC-GAATGGTCAATATGTTAATCCTCCAGTTCGTAGAGTGATACA
1 TGGTCTGAATGATAA-ACTGAATGGTCAAGATGTCAATCCTCCAGTTCGTAGAGTGATACA
* * * * *
10332018 TGGTCTGAATGATAACCTGAATGGTCAAGATGTCAATCCTCCTGTTCGTAGGGTGCTACC
1 TGGTCTGAATGATAAACTGAATGGTCAAGATGTCAATCCTCCAGTTCGTAGAGTGATACA
* * ** *
10332078 TAGTTTGAATGATAATTTGAATGGTCAGGATG
1 TGGTCTGAATGATAAACTGAATGGTCAAGATG
10332110 CTAATTCTCC
Statistics
Matches: 78, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
59 1 0.01
60 77 0.99
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.32
Consensus pattern (60 bp):
TGGTCTGAATGATAAACTGAATGGTCAAGATGTCAATCCTCCAGTTCGTAGAGTGATACA
Found at i:10332120 original size:60 final size:59
Alignment explanation
Indices: 10331976--10332135 Score: 176
Period size: 60 Copynumber: 2.7 Consensus size: 59
10331966 ATGATAAGAC
* * * *
10331976 GAATGGTCAATATGTTAATCCTCCAGTTCGTAGAGTGATACATGGTCTGAATGATAACCT
1 GAATGGTCAAGATG-TAATCCTCCTGTTCGTAGGGTGATACATAGTCTGAATGATAACCT
* * * **
10332036 GAATGGTCAAGATGTCAATCCTCCTGTTCGTAGGGTGCTACCTAGTTTGAATGATAATTT
1 GAATGGTCAAGATGT-AATCCTCCTGTTCGTAGGGTGATACATAGTCTGAATGATAACCT
* * * *
10332096 GAATGGTCAGGATGCTAATTCTCCTATTCATAGGGTGATA
1 GAATGGTCAAGATG-TAATCCTCCTGTTCGTAGGGTGATA
10332136 GATGACTGAG
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
59 1 0.01
60 82 0.98
61 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.23, T:0.33
Consensus pattern (59 bp):
GAATGGTCAAGATGTAATCCTCCTGTTCGTAGGGTGATACATAGTCTGAATGATAACCT
Found at i:10334038 original size:29 final size:29
Alignment explanation
Indices: 10334003--10334078 Score: 152
Period size: 29 Copynumber: 2.6 Consensus size: 29
10333993 CCGAAAGGTA
10334003 AAATTGAAGACGTACTGGTAAGGGTAGAT
1 AAATTGAAGACGTACTGGTAAGGGTAGAT
10334032 AAATTGAAGACGTACTGGTAAGGGTAGAT
1 AAATTGAAGACGTACTGGTAAGGGTAGAT
10334061 AAATTGAAGACGTACTGG
1 AAATTGAAGACGTACTGG
10334079 AAAGCAAGAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 47 1.00
ACGTcount: A:0.38, C:0.08, G:0.30, T:0.24
Consensus pattern (29 bp):
AAATTGAAGACGTACTGGTAAGGGTAGAT
Found at i:10345173 original size:31 final size:31
Alignment explanation
Indices: 10345130--10345202 Score: 85
Period size: 31 Copynumber: 2.4 Consensus size: 31
10345120 ATAAATCTCT
* * *
10345130 AAAATTTTTAAAATTTTTAATTAAAA-CTATA
1 AAAAATTTTAAAAGTTATAATTAAAACCT-TA
* *
10345161 AAAAATTTTAAAAGTTATCATTAAAACCTTC
1 AAAAATTTTAAAAGTTATAATTAAAACCTTA
10345192 AAAAATTTTAA
1 AAAAATTTTAA
10345203 TTAAAATTTC
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
31 34 0.94
32 2 0.06
ACGTcount: A:0.52, C:0.07, G:0.01, T:0.40
Consensus pattern (31 bp):
AAAAATTTTAAAAGTTATAATTAAAACCTTA
Found at i:10345215 original size:21 final size:21
Alignment explanation
Indices: 10345162--10345215 Score: 54
Period size: 22 Copynumber: 2.5 Consensus size: 21
10345152 AAAACTATAA
* * *
10345162 AAAATTTTAAAAGTTATCATT
1 AAAATTTCAAAAATTATAATT
* *
10345183 AAAACCTTCAAAAATTTTAATT
1 AAAA-TTTCAAAAATTATAATT
10345205 AAAATTTCAAA
1 AAAATTTCAAA
10345216 CTTAACACCA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 10 0.38
22 16 0.62
ACGTcount: A:0.52, C:0.09, G:0.02, T:0.37
Consensus pattern (21 bp):
AAAATTTCAAAAATTATAATT
Found at i:10345895 original size:18 final size:19
Alignment explanation
Indices: 10345872--10345907 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
10345862 CCTGGGAGGA
*
10345872 ATTGGGGTTGGT-TTGGGT
1 ATTGGGCTTGGTCTTGGGT
10345890 ATTGGGCTTGGTCTTGGG
1 ATTGGGCTTGGTCTTGGG
10345908 CTTGGTGGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.06, C:0.06, G:0.47, T:0.42
Consensus pattern (19 bp):
ATTGGGCTTGGTCTTGGGT
Found at i:10347530 original size:7 final size:7
Alignment explanation
Indices: 10347518--10347565 Score: 53
Period size: 7 Copynumber: 6.7 Consensus size: 7
10347508 AAACAATTCG
10347518 AAAATTA
1 AAAATTA
10347525 AAAATTA
1 AAAATTA
10347532 ACAAA-TA
1 A-AAATTA
10347539 AAAATTA
1 AAAATTA
*
10347546 AAAATAA
1 AAAATTA
*
10347553 AAGAAATA
1 AA-AATTA
10347561 AAAAT
1 AAAAT
10347566 ATTGTATCTA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
6 3 0.09
7 23 0.68
8 8 0.24
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (7 bp):
AAAATTA
Found at i:10347543 original size:21 final size:22
Alignment explanation
Indices: 10347518--10347565 Score: 71
Period size: 21 Copynumber: 2.2 Consensus size: 22
10347508 AAACAATTCG
*
10347518 AAAATTAAAAAT-TAACAAATA
1 AAAATTAAAAATAAAACAAATA
*
10347539 AAAATTAAAAATAAAAGAAATA
1 AAAATTAAAAATAAAACAAATA
10347561 AAAAT
1 AAAAT
10347566 ATTGTATCTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
21 12 0.50
22 12 0.50
ACGTcount: A:0.75, C:0.02, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAATTAAAAATAAAACAAATA
Found at i:10355087 original size:151 final size:146
Alignment explanation
Indices: 10354743--10355155 Score: 495
Period size: 151 Copynumber: 2.7 Consensus size: 146
10354733 TGGCTGAGAG
* *
10354743 ACACGCCCATGTCTCAGGCCTTGTAACCTTCGAACTAGGGACACACGGCCGTGTCCCAACTCGTG
1 ACACGCCCGTGTCTCAGG-CTTGTAACCTTCGAACTAGGGACACAAGGCC--GTCCCAACTCGTG
* * * * *
10354808 TGCTCACCCGTGTAACTCACTGAGTAGGGTCACACGACCATGCCGCACGCCATGTGCCAAGCCAT
63 TCCTCA-CTGTGTAACTCACTGAGTAGGGTCACACGGCCATGTCACACGCCATGTGCCAAGCCAT
10354873 GTAACTCTATAAGTTGCCCC
127 GTAACTCTATAAGTTGCCCC
* * * * *
10354893 GCACGCCTGTGTCTTAGGCCGTGTAACCTTCGAACTAGGGACACAAGGCCGTCCCCTAACTCATG
1 ACACGCCCGTGTCTCAGG-CTTGTAACCTTCGAACTAGGGACACAAGGCCGT-CCC-AACTCGTG
*
10354958 TCCTCATCTGTGTAACTCACTGAGTAGGGTCACACGGCCATGTCACACGCCTGTGTGCCAAGCCA
63 TCCTCA-CTGTGTAACTCACTGAGTAGGGTCACACGGCCATGTCACACGCC-ATGTGCCAAGCCA
* *
10355023 TGTAACTCTCTAGGTTGCCCC
126 TGTAACTCTATAAGTTGCCCC
* * *
10355044 ACATGCCCGTGTCTCAGGCTATGTAACCTTCGAATTAGGGACACATA-GCTATGTCCCAACTCGT
1 ACACGCCCGTGTCTCAGGCT-TGTAACCTTCGAACTAGGGACACA-AGGC--CGTCCCAACTCGT
* * * *
10355108 GTCCTCACTCGTGTAACTTATTGAGTAGGGTCACACAGCCGTGTCACA
62 GTCCTCACT-GTGTAACTCACTGAGTAGGGTCACACGGCCATGTCACA
10355156 GGTCGTGTGG
Statistics
Matches: 227, Mismatches: 28, Indels: 15
0.84 0.10 0.06
Matches are distributed among these distances:
148 2 0.01
149 3 0.01
150 99 0.44
151 117 0.52
152 4 0.02
153 2 0.01
ACGTcount: A:0.22, C:0.32, G:0.22, T:0.23
Consensus pattern (146 bp):
ACACGCCCGTGTCTCAGGCTTGTAACCTTCGAACTAGGGACACAAGGCCGTCCCAACTCGTGTCC
TCACTGTGTAACTCACTGAGTAGGGTCACACGGCCATGTCACACGCCATGTGCCAAGCCATGTAA
CTCTATAAGTTGCCCC
Found at i:10361508 original size:40 final size:40
Alignment explanation
Indices: 10361442--10361600 Score: 174
Period size: 40 Copynumber: 4.0 Consensus size: 40
10361432 AATTATTGAA
* * * * *
10361442 TGATTGTACATGCGTGCCCATGTTTGTACTTCAGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * *
10361482 TGATTGCACATATGTTCTCCTATTTGTACTTCGGTACCCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * * * *
10361522 TAATTACACATACGTGCCCCTTTTTGTACTTCGGTGCCCA
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
* * *
10361562 TGATTGCACATACGTGCCCATGTTTGTACTTCGATACCC
1 TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC
10361601 TTGAACACAT
Statistics
Matches: 97, Mismatches: 22, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 97 1.00
ACGTcount: A:0.19, C:0.28, G:0.17, T:0.36
Consensus pattern (40 bp):
TGATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCC
Found at i:10361588 original size:80 final size:80
Alignment explanation
Indices: 10361449--10361600 Score: 198
Period size: 80 Copynumber: 1.9 Consensus size: 80
10361439 GAATGATTGT
* * * *
10361449 ACATGCGTGCCCATGTTTGTACTTCAGTACCCCTGATTGCACATATGTTCTCCTATTTGTACTTC
1 ACATACGTGCCCATGTTTGTACTTCAGTACCCATGATTGCACATACGTGCTCCTATTTGTACTTC
*
10361514 GGTACCCCTAATTAC
66 GATACCCCTAATTAC
* * * * *
10361529 ACATACGTGCCCCTTTTTGTACTTCGGTGCCCATGATTGCACATACGTGC-CCATGTTTGTACTT
1 ACATACGTGCCCATGTTTGTACTTCAGTACCCATGATTGCACATACGTGCTCC-TATTTGTACTT
10361593 CGATACCC
65 CGATACCC
10361601 TTGAACACAT
Statistics
Matches: 61, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
79 2 0.03
80 59 0.97
ACGTcount: A:0.19, C:0.30, G:0.16, T:0.35
Consensus pattern (80 bp):
ACATACGTGCCCATGTTTGTACTTCAGTACCCATGATTGCACATACGTGCTCCTATTTGTACTTC
GATACCCCTAATTAC
Found at i:10365196 original size:20 final size:20
Alignment explanation
Indices: 10365146--10365202 Score: 60
Period size: 20 Copynumber: 2.9 Consensus size: 20
10365136 AGTTTATGCT
* ** *
10365146 AAGTAAATGAAATGCAAAGT
1 AAGTAAATGGAATGGTAAGA
*
10365166 AAGTAAGTGGAATGGTAAGA
1 AAGTAAATGGAATGGTAAGA
*
10365186 AAGTAAATGGAGTGGTA
1 AAGTAAATGGAATGGTA
10365203 CATAGTTTAT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.47, C:0.02, G:0.30, T:0.21
Consensus pattern (20 bp):
AAGTAAATGGAATGGTAAGA
Found at i:10368551 original size:26 final size:26
Alignment explanation
Indices: 10368517--10368597 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
10368507 AACGTACCAA
* * *
10368517 TATCACAGCAAGGCTGCCAATAATAG
1 TATCACAGCAAAGCTGCCAGTAACAG
* *
10368543 TATCGCAGCAAAGCTGCTAGTAACAG
1 TATCACAGCAAAGCTGCCAGTAACAG
10368569 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCACAGCAAAGCTGCCAGTAACAG
10368595 TAT
1 TAT
10368598 ACTACCTCCA
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 48 1.00
ACGTcount: A:0.37, C:0.23, G:0.20, T:0.20
Consensus pattern (26 bp):
TATCACAGCAAAGCTGCCAGTAACAG
Found at i:10368842 original size:26 final size:27
Alignment explanation
Indices: 10368768--10368927 Score: 223
Period size: 27 Copynumber: 6.0 Consensus size: 27
10368758 ACAGTCAGTC
* * *
10368768 TACCCTATGGGGGTATTTTGGTTATTT
1 TACCCTATGGGGGTATTTCGATCATTT
10368795 TACCCTATGGGGGTATTTCGATCATTT
1 TACCCTATGGGGGTATTTCGATCATTT
*** *
10368822 TACCCTA-CAAGGTATTTCGATAATTT
1 TACCCTATGGGGGTATTTCGATCATTT
*
10368848 TACCGTATGGGGGTATTTCGATCATTT
1 TACCCTATGGGGGTATTTCGATCATTT
*
10368875 TACCTTATGGGGGTATTTCGATCATTT
1 TACCCTATGGGGGTATTTCGATCATTT
*
10368902 TACCCTATGGGGGTATTTCGACCATT
1 TACCCTATGGGGGTATTTCGATCATT
10368928 CATTTACCTC
Statistics
Matches: 117, Mismatches: 15, Indels: 2
0.87 0.11 0.01
Matches are distributed among these distances:
26 21 0.18
27 96 0.82
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.41
Consensus pattern (27 bp):
TACCCTATGGGGGTATTTCGATCATTT
Found at i:10379315 original size:26 final size:26
Alignment explanation
Indices: 10379239--10379318 Score: 117
Period size: 26 Copynumber: 3.1 Consensus size: 26
10379229 AACGCACCAA
* * *
10379239 TATCGCAGC-AAGCTACCAGTAATAA
1 TATCGCAGCAAAGCTGCCAGTAACAG
*
10379264 TATCACAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
10379290 TATCGCAGCAAAGCTGCCAGTAACAG
1 TATCGCAGCAAAGCTGCCAGTAACAG
10379316 TAT
1 TAT
10379319 ACTACCTCCA
Statistics
Matches: 49, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
25 8 0.16
26 41 0.84
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (26 bp):
TATCGCAGCAAAGCTGCCAGTAACAG
Found at i:10379531 original size:27 final size:26
Alignment explanation
Indices: 10379471--10379655 Score: 140
Period size: 27 Copynumber: 6.9 Consensus size: 26
10379461 TCATCTCCTA
** * *
10379471 GGGGTATAACAGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTCTA-CCTATG
*
10379498 AGGGTATTTCAGTCATTCTATCCTATG
1 GGGGTATTTCAGTCATTCTA-CCTATG
* *
10379525 GGAGTATTTC-GATCATTCTATCCTATA
1 GGGGTATTTCAG-TCATTCTA-CCTATG
* *
10379552 GGGGTATTTCGGTCATTTTACTCTATG
1 GGGGTATTTCAGTCATTCTAC-CTATG
* *
10379579 GGGGTATTTCAATCATTTTACCTTATG
1 GGGGTATTTCAGTCATTCTACC-TATG
*
10379606 GGGGTATTTC-GATCATTTTACCTAATG
1 GGGGTATTTCAG-TCATTCTACCT-ATG
* ** *
10379633 AGGGTATTTTGGTCATTTTACCT
1 GGGGTATTTCAGTCATTCTACCT
10379656 GACCTAAACG
Statistics
Matches: 134, Mismatches: 17, Indels: 14
0.81 0.10 0.08
Matches are distributed among these distances:
26 4 0.03
27 128 0.96
28 2 0.01
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (26 bp):
GGGGTATTTCAGTCATTCTACCTATG
Found at i:10379541 original size:54 final size:51
Alignment explanation
Indices: 10379483--10379654 Score: 182
Period size: 54 Copynumber: 3.2 Consensus size: 51
10379473 GGTATAACAG
* *
10379483 TCATTTTACCCTATAAGGGTATTTCAGTCATTCTATCCTATGGGAGTATTTCGA
1 TCATTTTACCCTATAGGGGTATTTC-GTCATTTTA-CCTATGGG-GTATTTCGA
* * *
10379537 TCATTCTATCCTATAGGGGTATTTCGGTCATTTTACTCTATGGGGGTATTTCAA
1 TCATTTTACCCTATAGGGGTATTTC-GTCATTTTAC-CTAT-GGGGTATTTCGA
* * * *
10379591 TCATTTTACCTTATGGGGGTATTTCGATCATTTTACCTAATGAGGGTATTTTGG
1 TCATTTTACCCTATAGGGGTATTTCG-TCATTTTACCT-ATG-GGGTATTTCGA
10379645 TCATTTTACC
1 TCATTTTACC
10379655 TGACCTAAAC
Statistics
Matches: 100, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
53 5 0.05
54 92 0.92
55 3 0.03
ACGTcount: A:0.22, C:0.17, G:0.19, T:0.43
Consensus pattern (51 bp):
TCATTTTACCCTATAGGGGTATTTCGTCATTTTACCTATGGGGTATTTCGA
Found at i:10379638 original size:81 final size:81
Alignment explanation
Indices: 10379482--10379654 Score: 226
Period size: 81 Copynumber: 2.1 Consensus size: 81
10379472 GGGTATAACA
*
10379482 GTCATTTTACCCTATAAGGGTATTTCAGTCATTCTATCCTATGGGAGTATTTCGATCATTCTATC
1 GTCATTTTACCCTATAAGGGTATTTCAATCATTCTATCCTATGGGAGTATTTCGATCATTCTATC
10379547 CTATAGGGGTATTTCG
66 CTATAGGGGTATTTCG
* ** * * *
10379563 GTCATTTTACTCTATGGGGGTATTTCAATCATTTTA-CCTTATGGGGGTATTTCGATCATTTTA-
1 GTCATTTTACCCTATAAGGGTATTTCAATCATTCTATCC-TATGGGAGTATTTCGATCATTCTAT
*
10379626 CCTA-ATGAGGGTATTTTG
65 CCTATA-G-GGGTATTTCG
10379644 GTCATTTTACC
1 GTCATTTTACC
10379655 TGACCTAAAC
Statistics
Matches: 80, Mismatches: 9, Indels: 6
0.84 0.09 0.06
Matches are distributed among these distances:
79 1 0.01
80 7 0.09
81 72 0.90
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (81 bp):
GTCATTTTACCCTATAAGGGTATTTCAATCATTCTATCCTATGGGAGTATTTCGATCATTCTATC
CTATAGGGGTATTTCG
Found at i:10380385 original size:26 final size:26
Alignment explanation
Indices: 10380347--10380423 Score: 82
Period size: 26 Copynumber: 3.0 Consensus size: 26
10380337 TCAGCACACC
* *
10380347 AATATCTCAGCAAGGTTGCCAGTAAT
1 AATATCGCAGCAAAGTTGCCAGTAAT
* *
10380373 AATATCGCTGCAAAGTTGCCAGTAAC
1 AATATCGCAGCAAAGTTGCCAGTAAT
* * * *
10380399 AGTATTGCAGCAAAGCTACCAGTAA
1 AATATCGCAGCAAAGTTGCCAGTAA
10380424 CAGTATACTA
Statistics
Matches: 42, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.36, C:0.21, G:0.19, T:0.23
Consensus pattern (26 bp):
AATATCGCAGCAAAGTTGCCAGTAAT
Found at i:10380596 original size:27 final size:26
Alignment explanation
Indices: 10380564--10380631 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 26
10380554 AAGGCCATAT
10380564 CAGTCATTTCATCTCC-TAGGGGTATAA
1 CAGTCATTTCA-C-CCATAGGGGTATAA
*
10380591 CAGTCATTTTACCCTATAGGGGTATAA
1 CAGTCATTTCACCC-ATAGGGGTATAA
*
10380618 CAGTCATTTTACCC
1 CAGTCATTTCACCC
10380632 TATGAGTGTA
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
25 2 0.05
26 1 0.03
27 35 0.92
ACGTcount: A:0.26, C:0.24, G:0.16, T:0.34
Consensus pattern (26 bp):
CAGTCATTTCACCCATAGGGGTATAA
Found at i:10380632 original size:27 final size:27
Alignment explanation
Indices: 10380580--10380689 Score: 125
Period size: 27 Copynumber: 4.1 Consensus size: 27
10380570 TTTCATCTCC
10380580 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTA
10380607 TAGGGGTATAACAGTCATTTTACCCTA
1 TAGGGGTATAACAGTCATTTTACCCTA
* ** * *
10380634 T-GAGTGTATTTCGGTCAATTTACCCTA
1 TAG-GGGTATAACAGTCATTTTACCCTA
**
10380661 T-GGGGTAATTTCAGTCATTTTACCCTA
1 TAGGGGT-ATAACAGTCATTTTACCCTA
10380688 TA
1 TA
10380690 AGAGTATTTC
Statistics
Matches: 72, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 4 0.06
27 68 0.94
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.37
Consensus pattern (27 bp):
TAGGGGTATAACAGTCATTTTACCCTA
Found at i:10380658 original size:54 final size:54
Alignment explanation
Indices: 10380593--10380704 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
10380583 GGGTATAACA
* * *
10380593 GTCATTTTACCCTATAGGGGT-ATAACAGTCATTTTACCCTATGAGTGTATTTCG
1 GTCAATTTACCCTAT-GGGGTAATAACAGTCATTTTACCCTATAAGAGTATTTCG
**
10380647 GTCAATTTACCCTATGGGGTAATTTCAGTCATTTTACCCTATAAGAGTATTTCG
1 GTCAATTTACCCTATGGGGTAATAACAGTCATTTTACCCTATAAGAGTATTTCG
10380701 GTCA
1 GTCA
10380705 TGCATTGACC
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
53 5 0.10
54 47 0.90
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (54 bp):
GTCAATTTACCCTATGGGGTAATAACAGTCATTTTACCCTATAAGAGTATTTCG
Found at i:10380698 original size:27 final size:27
Alignment explanation
Indices: 10380591--10380705 Score: 124
Period size: 27 Copynumber: 4.3 Consensus size: 27
10380581 AGGGGTATAA
* **
10380591 CAGTCATTTTACCCTATAGGGGTATAA
1 CAGTCATTTTACCCTATAAGGGTATTT
* *
10380618 CAGTCATTTTACCCTATGAGTGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
* * *
10380645 CGGTCAATTTACCCTAT-GGGGTAATTT
1 CAGTCATTTTACCCTATAAGGGT-ATTT
*
10380672 CAGTCATTTTACCCTATAAGAGTATTT
1 CAGTCATTTTACCCTATAAGGGTATTT
*
10380699 CGGTCAT
1 CAGTCAT
10380706 GCATTGACCT
Statistics
Matches: 72, Mismatches: 14, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
26 3 0.04
27 66 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.38
Consensus pattern (27 bp):
CAGTCATTTTACCCTATAAGGGTATTT
Found at i:10384010 original size:41 final size:41
Alignment explanation
Indices: 10383965--10384069 Score: 138
Period size: 41 Copynumber: 2.6 Consensus size: 41
10383955 GCTATTTAAA
* *
10383965 ATACACCGGCATAAAGCCTTCTAGGCACAAAGTCAGATATG
1 ATACACCGGCATAAAGCCTGCTAGGCACAAAGCCAGATATG
* *
10384006 ATACACCGGCATAAAGCCTGCTAGGCATAAAGCCTGATATG
1 ATACACCGGCATAAAGCCTGCTAGGCACAAAGCCAGATATG
* * * *
10384047 GTACACCAGCGTGAAGCCTGCTA
1 ATACACCGGCATAAAGCCTGCTA
10384070 TAATTCACCA
Statistics
Matches: 56, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 56 1.00
ACGTcount: A:0.33, C:0.26, G:0.22, T:0.19
Consensus pattern (41 bp):
ATACACCGGCATAAAGCCTGCTAGGCACAAAGCCAGATATG
Found at i:10390156 original size:19 final size:19
Alignment explanation
Indices: 10390132--10390197 Score: 114
Period size: 19 Copynumber: 3.5 Consensus size: 19
10390122 NNNNNNNNNN
10390132 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
**
10390151 AATCTTAGATATGATATAT
1 AATCTTAGATATGATATGC
10390170 AATCTTAGATATGATATGC
1 AATCTTAGATATGATATGC
10390189 AATCTTAGA
1 AATCTTAGA
10390198 AGATATGATT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 43 1.00
ACGTcount: A:0.39, C:0.09, G:0.14, T:0.38
Consensus pattern (19 bp):
AATCTTAGATATGATATGC
Found at i:10390223 original size:22 final size:21
Alignment explanation
Indices: 10390138--10390223 Score: 90
Period size: 19 Copynumber: 4.2 Consensus size: 21
10390128 NNNNAATCTT
*
10390138 AGATATGATATGCAATCTT--
1 AGATATGATATGTAATCTTAG
*
10390157 AGATATGATATATAATCTT--
1 AGATATGATATGTAATCTTAG
*
10390176 AGATATGATATGCAATCTTAG
1 AGATATGATATGTAATCTTAG
*
10390197 AAGATATGATTTCGTAATCTTAG
1 -AGATATGATAT-GTAATCTTAG
10390220 AGAT
1 AGAT
10390224 TTAATTTGTA
Statistics
Matches: 57, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
19 34 0.60
22 14 0.25
23 9 0.16
ACGTcount: A:0.38, C:0.08, G:0.16, T:0.37
Consensus pattern (21 bp):
AGATATGATATGTAATCTTAG
Found at i:10396046 original size:14 final size:15
Alignment explanation
Indices: 10396020--10396052 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
10396010 TCCCAAGCTA
*
10396020 GGAAGGACCTTATGT
1 GGAAGGACCTTATCT
10396035 GGAAGG-CCTTATCT
1 GGAAGGACCTTATCT
10396049 GGAA
1 GGAA
10396053 AAGCATTGAC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.27, C:0.15, G:0.33, T:0.24
Consensus pattern (15 bp):
GGAAGGACCTTATCT
Found at i:10397816 original size:19 final size:19
Alignment explanation
Indices: 10397792--10398054 Score: 400
Period size: 19 Copynumber: 13.8 Consensus size: 19
10397782 AATCTTCAGG
10397792 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10397811 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
10397830 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10397849 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10397868 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10397887 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10397906 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10397925 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10397944 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10397963 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* **
10397982 AATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10398001 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
**
10398020 GATATATAATCTTAGATAT
1 GATATGCAATCTTAGATAT
10398039 GATATGCAATCTTAGA
1 GATATGCAATCTTAGA
10398055 AGATATGATT
Statistics
Matches: 216, Mismatches: 28, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 216 1.00
ACGTcount: A:0.40, C:0.08, G:0.13, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:10397842 original size:38 final size:38
Alignment explanation
Indices: 10397799--10398054 Score: 494
Period size: 38 Copynumber: 6.7 Consensus size: 38
10397789 AGGGATATGC
*
10397799 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
10397837 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
10397875 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
10397913 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
*
10397951 AATCTTAGATATGATATGCAATCTTAGATATAATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
10397989 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
1 AATCTTAGATATGATATGCAATCTTAGATATGATATAT
10398027 AATCTTAGATATGATATGCAATCTTAGA
1 AATCTTAGATATGATATGCAATCTTAGA
10398055 AGATATGATT
Statistics
Matches: 215, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
38 215 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.39
Consensus pattern (38 bp):
AATCTTAGATATGATATGCAATCTTAGATATGATATAT
Found at i:10399894 original size:16 final size:16
Alignment explanation
Indices: 10399873--10399904 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
10399863 AAAGTATGTG
10399873 ATTATTGAGGACATGC
1 ATTATTGAGGACATGC
10399889 ATTATTGAGGACATGC
1 ATTATTGAGGACATGC
10399905 TGAGCATGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.12, G:0.25, T:0.31
Consensus pattern (16 bp):
ATTATTGAGGACATGC
Found at i:10402354 original size:43 final size:45
Alignment explanation
Indices: 10402236--10402366 Score: 135
Period size: 43 Copynumber: 3.0 Consensus size: 45
10402226 TCTAAAATTC
* * *
10402236 GTGGTTTATCAACAACCTACATGACAGCTTGTC-AGCGAATATTA
1 GTGGTTTATCCACAACCTAAATGGCAGCTTGTCTAGCGAATATTA
* * * *
10402280 ATGGCTTCATCCACAACCTAAATGGCCGCTTGTCTA-CGAAT-TTG
1 GTGG-TTTATCCACAACCTAAATGGCAGCTTGTCTAGCGAATATTA
* * *
10402324 GTGGTTTATCCACAACCTATATGGTAGCTTGTCT-GCAAATATT
1 GTGGTTTATCCACAACCTAAATGGCAGCTTGTCTAGCGAATATT
10402367 GGTGACTTTG
Statistics
Matches: 70, Mismatches: 13, Indels: 8
0.77 0.14 0.09
Matches are distributed among these distances:
43 30 0.43
44 10 0.14
45 29 0.41
46 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.32
Consensus pattern (45 bp):
GTGGTTTATCCACAACCTAAATGGCAGCTTGTCTAGCGAATATTA
Found at i:10405202 original size:22 final size:22
Alignment explanation
Indices: 10405176--10405220 Score: 65
Period size: 22 Copynumber: 2.0 Consensus size: 22
10405166 AGATCAACAC
10405176 AAATAT-AATCACATACATATCA
1 AAATATCAATCACA-ACATATCA
*
10405198 AAATATCAATCTCAACATATCA
1 AAATATCAATCACAACATATCA
10405220 A
1 A
10405221 TCATCATAAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.53, C:0.20, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATATCAATCACAACATATCA
Found at i:10423747 original size:25 final size:26
Alignment explanation
Indices: 10423706--10423756 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
10423696 AAATGAGGGA
* *
10423706 AAAAGAAAGAATGAAAA-CACAAAAG
1 AAAAGAAAGAAAGAAAATCAAAAAAG
10423731 AAAAGAAA-AAAGAAAAATCAAAAAAG
1 AAAAGAAAGAAAG-AAAATCAAAAAAG
10423757 GAGAGTGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
24 3 0.14
25 12 0.55
26 7 0.32
ACGTcount: A:0.76, C:0.06, G:0.14, T:0.04
Consensus pattern (26 bp):
AAAAGAAAGAAAGAAAATCAAAAAAG
Found at i:10423802 original size:19 final size:18
Alignment explanation
Indices: 10423778--10423813 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
10423768 GAATGTGAGA
10423778 AAAGAGAGAGATGAAAAAG
1 AAAGAGAGA-ATGAAAAAG
*
10423797 AAAGAGCGAATGAAAAA
1 AAAGAGAGAATGAAAAA
10423814 TTGAATGTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 8 0.50
19 8 0.50
ACGTcount: A:0.64, C:0.03, G:0.28, T:0.06
Consensus pattern (18 bp):
AAAGAGAGAATGAAAAAG
Found at i:10428413 original size:9 final size:9
Alignment explanation
Indices: 10428399--10428424 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
10428389 TTAAAACACA
10428399 AACTAAAAT
1 AACTAAAAT
10428408 AACTAAAAT
1 AACTAAAAT
10428417 AACTAAAA
1 AACTAAAA
10428425 AATTAATGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.69, C:0.12, G:0.00, T:0.19
Consensus pattern (9 bp):
AACTAAAAT
Found at i:10432260 original size:12 final size:12
Alignment explanation
Indices: 10432243--10432274 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
10432233 TTAGGTAGTT
10432243 ACACGGCCTAGC
1 ACACGGCCTAGC
*
10432255 ACACGGCCTGGC
1 ACACGGCCTAGC
10432267 ACACGGCC
1 ACACGGCC
10432275 GTGTGAGGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.22, C:0.44, G:0.28, T:0.06
Consensus pattern (12 bp):
ACACGGCCTAGC
Found at i:10440186 original size:15 final size:16
Alignment explanation
Indices: 10440166--10440198 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
10440156 AAACCATGAA
*
10440166 AAAAGAAA-GGAAAAC
1 AAAAGAAATAGAAAAC
10440181 AAAAGAAATAGAAAAC
1 AAAAGAAATAGAAAAC
10440197 AA
1 AA
10440199 CAACAAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 8 0.50
16 8 0.50
ACGTcount: A:0.76, C:0.06, G:0.15, T:0.03
Consensus pattern (16 bp):
AAAAGAAATAGAAAAC
Found at i:10441108 original size:41 final size:41
Alignment explanation
Indices: 10441051--10441141 Score: 146
Period size: 41 Copynumber: 2.2 Consensus size: 41
10441041 CACCAAGGAA
* * *
10441051 ATAAGATATGATGTGATCTACTTTACTGCAACTTCAGAGAG
1 ATAAGATCTGATGTGATCTACTCTACTGCAACCTCAGAGAG
*
10441092 ATAAGATCTGATGTGATCTACTCTACTGGAACCTCAGAGAG
1 ATAAGATCTGATGTGATCTACTCTACTGCAACCTCAGAGAG
10441133 ATAAGATCT
1 ATAAGATCT
10441142 ATTATTTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 46 1.00
ACGTcount: A:0.34, C:0.16, G:0.20, T:0.30
Consensus pattern (41 bp):
ATAAGATCTGATGTGATCTACTCTACTGCAACCTCAGAGAG
Found at i:10441468 original size:216 final size:216
Alignment explanation
Indices: 10441076--10442064 Score: 1424
Period size: 216 Copynumber: 4.6 Consensus size: 216
10441066 ATCTACTTTA
* * * * *
10441076 CTGCAACTTCAGAGAGATAAGATCTGATGTGATCTACTCTACTGGAACCTCAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
* * *
10441141 TATTATTTTAATCAGCTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTCAATCAT-CTCCG
66 TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATC-TGCTCCG
** *
10441205 CTACTACTTAGGGAGATAAGATCTGCCATCCTCGATCTGCCCCACTACTGCTTAGGGAGATAAGA
130 CTACGGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGA
* *
10441270 TCTATTTCTCCAGTCTACTCCG
195 TCTGTTTCTTCAGTCTACTCCG
** * * *
10441292 CTGCATTCTCAGGGAGATAAGACCTAATACGATCTACTCTACTGCAACCTCAGAGAGCTAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
* *
10441357 TATTATTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
66 TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
* *
10441422 TACGGCTTAGGGAGATCAGATCTGACATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
131 TACGGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* *
10441487 TTGTTTCTTCAGTCTACTCTG
196 CTGTTTCTTCAGTCTACTCCG
* * * *
10441508 CTACAACCTCAGGAAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCACACAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
*
10441573 TATTATTTTAATCCGCTCCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
66 TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
* * * *
10441638 TACGGCTAAGGGAGATAAGATCTGCCATCCTCGATCTACTCCACTACTACTTA-GGAGATAATAT
131 TACGGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
* * **
10441702 CTGTTTCTTTATTCTGTTCCG
196 CTGTTTCTTCAGTCTACTCCG
* * *
10441723 CTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGCAACCTGAGAGAGATAAGATC
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
* * * *
10441788 TTTTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGACTTCAATCTGCTCTGC
66 TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
*
10441853 TACAGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
131 TACGGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
**
10441918 CTGTTTCTTCAGTCTGGTCCG
196 CTGTTTCTTCAGTCTACTCCG
* * ** *
10441939 CTGTAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTACAGTCTCAGAGAGATAAGATA
1 CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
* * * ** * *
10442004 TTTTATTTTAACCCTCTCCACTGCAACTTCAACGAGATAGGATTATTGGCTTCGATCTGCT
66 TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCT
10442065 TCATTGCCAA
Statistics
Matches: 691, Mismatches: 80, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
215 193 0.28
216 498 0.72
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (216 bp):
CTGCAACCTCAGGGAGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATC
TATTATTTTAATCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGC
TACGGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAGATAAGAT
CTGTTTCTTCAGTCTACTCCG
Found at i:10441894 original size:431 final size:432
Alignment explanation
Indices: 10441090--10442064 Score: 1414
Period size: 431 Copynumber: 2.3 Consensus size: 432
10441080 AACTTCAGAG
* * * *
10441090 AGATAAGATCTGATGTGATCTACTCTACTGGAACCTCAGAGAGATAAGATCTATTATTTTAATCA
1 AGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTTAATCC
* * * *
10441155 GCTCCACTGCAACTTCAGGAAGATAGGATTACCGGCTTCAATCAT-CTCCGCTACTACTTAGGGA
66 GCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATC-TGCTCCGCTACGACTAAGGGA
* *
10441219 GATAAGATCTGCCATCCTCGATCTGCCCCACTACTGCTTAGGGAGATAAGATCTATTTCTCCAGT
130 GATAAGATCTGCCATCCTCGATCTACCCCACTACTACTTAGGGAGATAAGATCTATTTCTCCAGT
** *
10441284 CTACTCCGCTGCATTCTCAGGGAGATAAGACCTAATACGATCTACTCTACTGCAACCTCAGAGAG
195 CTACTCCGCTGCAACCTCAAGGAGATAAGACCTAATACGATCTACTCTACTGCAACCTCAGAGAG
* * * * *
10441349 CTAAGATCTATTATTTTAATCCGCTCCATTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATC
260 ATAAGATCTATTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGACTTCAATC
* *
10441414 TGCTCCGCTACGGCTTAGGGAGATCAGATCTGACATCCTCGATCTGCTCCACTACTGCTTAGGGA
325 TGCTCCGCTACAGCTTAGGGAGATAAGATCTGACATCCTCGATCTGCTCCACTACTGCTTAGGGA
* *
10441479 GATAAGATTTGTTTCTTCAGTCTACTCTGCTACAACCTCAGGA
390 GATAAGATCTGTTTCTTCAGTCTACTCCGCTACAACCTCAGGA
* *
10441522 AGATAAGACCTGATGCGATCTACTCTACTGCAACCTCACACAGATAAGATCTATTATTTTAATCC
1 AGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTTAATCC
* *
10441587 GCTCCACTGTAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTACGGCTAAGGGAG
66 GCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTACGACTAAGGGAG
* * * ** *
10441652 ATAAGATCTGCCATCCTCGATCTACTCCACTACTACTTA-GGAGATAATATCTGTTTCTTTATTC
131 ATAAGATCTGCCATCCTCGATCTACCCCACTACTACTTAGGGAGATAAGATCTATTTCTCCAGTC
** * * * *
10441716 TGTTCCGCTGCAACCTCAAGGAGATAAGACCTGATGCGATCTACTCTGCTGCAACCTGAGAGAGA
196 TACTCCGCTGCAACCTCAAGGAGATAAGACCTAATACGATCTACTCTACTGCAACCTCAGAGAGA
*
10441781 TAAGATCTTTTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGACTTCAATCT
261 TAAGATCTATTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGACTTCAATCT
* *
10441846 GCTCTGCTACAGCTTAGGGAGATAAGATCTGCCATCCTCGATCTGCTCCACTACTGCTTAGGGAG
326 GCTCCGCTACAGCTTAGGGAGATAAGATCTGACATCCTCGATCTGCTCCACTACTGCTTAGGGAG
** ** *
10441911 ATAAGATCTGTTTCTTCAGTCTGGTCCGCTGTAACCTCAGGG
391 ATAAGATCTGTTTCTTCAGTCTACTCCGCTACAACCTCAGGA
* ** * * *
10441953 AGATAAGACCTGATGCGATCTACTCTACTACAGTCTCAGAGAGATAAGATATTTTATTTTAACCC
1 AGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTTAATCC
* ** * *
10442018 TCTCCACTGCAACTTCAACGAGATAGGATTATTGGCTTCGATCTGCT
66 GCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCT
10442065 TCATTGCCAA
Statistics
Matches: 482, Mismatches: 60, Indels: 3
0.88 0.11 0.01
Matches are distributed among these distances:
431 330 0.68
432 152 0.32
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (432 bp):
AGATAAGACCTGATGCGATCTACTCTACTGCAACCTCAGAGAGATAAGATCTATTATTTTAATCC
GCTCCACTGCAACTTCAGGGAGATAGGATTACTGGCTTCAATCTGCTCCGCTACGACTAAGGGAG
ATAAGATCTGCCATCCTCGATCTACCCCACTACTACTTAGGGAGATAAGATCTATTTCTCCAGTC
TACTCCGCTGCAACCTCAAGGAGATAAGACCTAATACGATCTACTCTACTGCAACCTCAGAGAGA
TAAGATCTATTATTTTAACCCGCTCCACTGCAACTTCAGGGAGATAGGATTACTGACTTCAATCT
GCTCCGCTACAGCTTAGGGAGATAAGATCTGACATCCTCGATCTGCTCCACTACTGCTTAGGGAG
ATAAGATCTGTTTCTTCAGTCTACTCCGCTACAACCTCAGGA
Found at i:10442202 original size:88 final size:88
Alignment explanation
Indices: 10442109--10442270 Score: 218
Period size: 88 Copynumber: 1.8 Consensus size: 88
10442099 TTCGAATTGC
* * *
10442109 TCCGCTGCAACCCAGGGAGGCAAGGCTGATGTCTT-CGATCTGCTTCACTGCCAGTATAGGAAGG
1 TCCGCTGCAACCCAGGGAGACAAGGCTGATG-CTTCCGATCTGCTTCACTGCCAGTACAGGAAGA
*
10442173 TAAGATCTACCATTTTCAACCTGT
65 CAAGATCTACCATTTTCAACCTGT
** * * * *
10442197 TCCGCTGCTGCTCAGGGAGATAAGGCTGGTGCTTCCGATCTGCTTCCCTGCCAGTACAGGAAGAC
1 TCCGCTGCAACCCAGGGAGACAAGGCTGATGCTTCCGATCTGCTTCACTGCCAGTACAGGAAGAC
10442262 AAGATCTAC
66 AAGATCTAC
10442271 AATCTTCGGC
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
87 3 0.05
88 60 0.95
ACGTcount: A:0.23, C:0.27, G:0.25, T:0.25
Consensus pattern (88 bp):
TCCGCTGCAACCCAGGGAGACAAGGCTGATGCTTCCGATCTGCTTCACTGCCAGTACAGGAAGAC
AAGATCTACCATTTTCAACCTGT
Found at i:10442303 original size:88 final size:88
Alignment explanation
Indices: 10442108--10442311 Score: 205
Period size: 88 Copynumber: 2.3 Consensus size: 88
10442098 TTTCGAATTG
* * ** * *
10442108 CTCCGCTGCAACCCAGGGAGGCAAGGCTGATGTCTTCGATCTGCTTCACTGCCAGTATAGGAAGG
1 CTCCGCTGCTACTCAGGGAGATAAGGCTGATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGA
* * * *
10442173 TAAGATCTACCATTTTCAACCTG
66 CAAGATCTACAATCTTCAACCTA
* * * *
10442196 TTCCGCTGCTGCTCAGGGAGATAAGGCTGGTG-CTTCCGATCTGCTTCCCTGCCAGTACAGGAAG
1 CTCCGCTGCTACTCAGGGAGATAAGGCTGATGTCTT-CGATCTGCTTCACTGCCAGTACAGGAAG
**
10442260 ACAAGATCTACAATCTTCGGCCTA
65 ACAAGATCTACAATCTTCAACCTA
* * *
10442284 CTCCAG-TGTTACTCTGGGAGGTAAGGCT
1 CTCC-GCTGCTACTCAGGGAGATAAGGCT
10442312 TAAATTTGCT
Statistics
Matches: 93, Mismatches: 21, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
87 3 0.03
88 89 0.96
89 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.25, T:0.25
Consensus pattern (88 bp):
CTCCGCTGCTACTCAGGGAGATAAGGCTGATGTCTTCGATCTGCTTCACTGCCAGTACAGGAAGA
CAAGATCTACAATCTTCAACCTA
Found at i:10443769 original size:19 final size:17
Alignment explanation
Indices: 10443737--10443785 Score: 62
Period size: 19 Copynumber: 2.8 Consensus size: 17
10443727 GGCCTCTCCA
*
10443737 TTTTCTTTTCTTTCTTAT
1 TTTTCTTTTTTTTCTT-T
*
10443755 TTTTGGTTTTTTTTCTTT
1 TTTT-CTTTTTTTTCTTT
10443773 TTTTCTTTTTTTT
1 TTTTCTTTTTTTT
10443786 TTAGGAATCA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 8 0.30
18 9 0.33
19 10 0.37
ACGTcount: A:0.02, C:0.10, G:0.04, T:0.84
Consensus pattern (17 bp):
TTTTCTTTTTTTTCTTT
Found at i:10443773 original size:8 final size:8
Alignment explanation
Indices: 10443737--10443784 Score: 51
Period size: 8 Copynumber: 5.5 Consensus size: 8
10443727 GGCCTCTCCA
10443737 TTTTCTTT
1 TTTTCTTT
10443745 TCTTTCTTAT
1 T-TTTCTT-T
*
10443755 TTTTGGTTTT
1 TTTT--CTTT
10443765 TTTTCTTT
1 TTTTCTTT
10443773 TTTTCTTT
1 TTTTCTTT
10443781 TTTT
1 TTTT
10443785 TTTAGGAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 8
0.77 0.05 0.18
Matches are distributed among these distances:
8 16 0.47
9 9 0.26
10 7 0.21
11 2 0.06
ACGTcount: A:0.02, C:0.10, G:0.04, T:0.83
Consensus pattern (8 bp):
TTTTCTTT
Found at i:10443785 original size:9 final size:9
Alignment explanation
Indices: 10443737--10443785 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
10443727 GGCCTCTCCA
10443737 TTTTCTTTT
1 TTTTCTTTT
*
10443746 CTTTCTTATT
1 TTTTCTT-TT
**
10443756 TTTGGTTTT
1 TTTTCTTTT
10443765 TTTTC-TTT
1 TTTTCTTTT
10443773 TTTTCTTTT
1 TTTTCTTTT
10443782 TTTT
1 TTTT
10443786 TTAGGAATCA
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
8 8 0.25
9 18 0.56
10 6 0.19
ACGTcount: A:0.02, C:0.10, G:0.04, T:0.84
Consensus pattern (9 bp):
TTTTCTTTT
Found at i:10444635 original size:7 final size:7
Alignment explanation
Indices: 10444619--10444712 Score: 54
Period size: 7 Copynumber: 13.7 Consensus size: 7
10444609 TTAACCTCTC
10444619 TTTTTC-
1 TTTTTCT
10444625 TTTTTC-
1 TTTTTCT
10444631 TTTTTC-
1 TTTTTCT
10444637 TTTTTC-
1 TTTTTCT
*
10444643 CTTTTCT
1 TTTTTCT
*
10444650 TTTTTAT
1 TTTTTCT
10444657 TATTTTCAT
1 T-TTTTC-T
10444666 TTTTT-T
1 TTTTTCT
* **
10444672 GATTTTGA
1 -TTTTTCT
**
10444680 TTTTGAT
1 TTTTTCT
10444687 TTTTTCT
1 TTTTTCT
10444694 TTTTTCT
1 TTTTTCT
*
10444701 TTTCTCT
1 TTTTTCT
10444708 TTTTT
1 TTTTT
10444713 TTTGATTTTT
Statistics
Matches: 69, Mismatches: 14, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
6 24 0.35
7 35 0.51
8 8 0.12
9 2 0.03
ACGTcount: A:0.06, C:0.12, G:0.03, T:0.79
Consensus pattern (7 bp):
TTTTTCT
Found at i:10444668 original size:6 final size:6
Alignment explanation
Indices: 10444617--10444653 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
10444607 CCTTAACCTC
*
10444617 TCTTTT TCTTTT TCTTTT TCTTTT TCCTTT TCTTTT T
1 TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT TCTTTT T
10444654 TATTATTTTC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (6 bp):
TCTTTT
Found at i:10444668 original size:15 final size:15
Alignment explanation
Indices: 10444644--10444697 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
10444634 TTCTTTTTCC
*
10444644 TTTTCTTTTTTATTA
1 TTTTCATTTTTATTA
10444659 TTTTCATTTTT-TTGA
1 TTTTCATTTTTATT-A
* *
10444674 TTTTGATTTTGATT-
1 TTTTCATTTTTATTA
10444688 TTTTC-TTTTT
1 TTTTCATTTTT
10444698 TCTTTTCTCT
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
13 4 0.12
14 6 0.19
15 20 0.62
16 2 0.06
ACGTcount: A:0.11, C:0.06, G:0.06, T:0.78
Consensus pattern (15 bp):
TTTTCATTTTTATTA
Found at i:10445839 original size:25 final size:25
Alignment explanation
Indices: 10445789--10445854 Score: 80
Period size: 25 Copynumber: 2.6 Consensus size: 25
10445779 AAGAAAATCC
*
10445789 AAAAGAATGAAAGAATAATTATTCA
1 AAAAGAATGAAAGAATAATTACTCA
*
10445814 AAAAGAATGAAAGAAT-ATTGGCTCA
1 AAAAGAATGAAAGAATAATT-ACTCA
10445839 AAAATGAATGCAAAGA
1 AAAA-GAATG-AAAGA
10445855 TGTATTTTAT
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
24 3 0.08
25 23 0.64
26 5 0.14
27 5 0.14
ACGTcount: A:0.58, C:0.06, G:0.17, T:0.20
Consensus pattern (25 bp):
AAAAGAATGAAAGAATAATTACTCA
Found at i:10453523 original size:26 final size:26
Alignment explanation
Indices: 10453483--10453535 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
10453473 ACTGGGAAAC
* *
10453483 CCCCATTTCGCAACTTACCTGGCGAA
1 CCCCAGTTCGCAACTTAACTGGCGAA
* *
10453509 CCCCAGTTCGTAACTTAACTGGTGAA
1 CCCCAGTTCGCAACTTAACTGGCGAA
10453535 C
1 C
10453536 ACTAGCTCAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.34, G:0.17, T:0.25
Consensus pattern (26 bp):
CCCCAGTTCGCAACTTAACTGGCGAA
Found at i:10456172 original size:20 final size:20
Alignment explanation
Indices: 10456149--10456249 Score: 87
Period size: 20 Copynumber: 5.0 Consensus size: 20
10456139 GTGCCCTTGT
*
10456149 TTGTACTTCGGTACCCCTGA
1 TTGTACTTCAGTACCCCTGA
*
10456169 TTGTACTT-ATGTGCCCCTGA
1 TTGTACTTCA-GTACCCCTGA
* *
10456189 TTGTATTTCGGTACCCCTGA
1 TTGTACTTCAGTACCCCTGA
* * * * *
10456209 ATGCACATCAGTGCCCCTGT
1 TTGTACTTCAGTACCCCTGA
* *
10456229 TTGCACTTCAGTTCCCCTGA
1 TTGTACTTCAGTACCCCTGA
10456249 T
1 T
10456250 CACATATTCG
Statistics
Matches: 63, Mismatches: 16, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
20 63 1.00
ACGTcount: A:0.16, C:0.30, G:0.19, T:0.36
Consensus pattern (20 bp):
TTGTACTTCAGTACCCCTGA
Found at i:10456177 original size:40 final size:40
Alignment explanation
Indices: 10456123--10456249 Score: 157
Period size: 40 Copynumber: 3.2 Consensus size: 40
10456113 GTAAATTATA
*
10456123 CCCTGATTGCACTTATGTGCCCTTGTTTGTACTTCGGTAC
1 CCCTGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTAC
* * *
10456163 CCCTGATTGTACTTATGTGCCCCTGATTGTATTTCGGTAC
1 CCCTGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTAC
* * * * *
10456203 CCCTGAATGCACATCA-GTGCCCCTGTTTGCACTTCAGTTC
1 CCCTGATTGCAC-TTATGTGCCCCTGTTTGTACTTCGGTAC
10456243 CCCTGAT
1 CCCTGAT
10456250 CACATATTCG
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
40 71 0.97
41 2 0.03
ACGTcount: A:0.15, C:0.30, G:0.19, T:0.36
Consensus pattern (40 bp):
CCCTGATTGCACTTATGTGCCCCTGTTTGTACTTCGGTAC
Found at i:10460992 original size:144 final size:144
Alignment explanation
Indices: 10460732--10461016 Score: 471
Period size: 144 Copynumber: 2.0 Consensus size: 144
10460722 TAATCCCCAG
* ** * *
10460732 ACTTGACGGGTCGGTGCAGCGGAGGACTTGACAGTGGCCACATGTAAATTTTAGATTGTTTTCTG
1 ACTTGACGGGCCGGTGCAAAGGAGGACTTGACAGTGGCCACACGCAAATTTTAGATTGTTTTCTG
* *
10460797 TTAATGCTTAAAATTTATTACTTATTTGTGGTTTGTGATGTATATTCTGGACTATGGACTGGTTG
66 TTAATGCTTAAAATTTATTACTTATTTGGGGTTTGTGATGTATATTATGGACTATGGACTGGTTG
10460862 GCTTTAAATTTAAA
131 GCTTTAAATTTAAA
* *
10460876 ACTTGACGGGCCGGTGCAAAGGAGGACTTTACGGTGGCCACACGCAAATTTTAGATTGTTTTCTG
1 ACTTGACGGGCCGGTGCAAAGGAGGACTTGACAGTGGCCACACGCAAATTTTAGATTGTTTTCTG
* *
10460941 TTAATGCTTAAAATTTATTACTTATTTGGGGTTTTTGATGTATATTATGGACTTTGGACTGGTTG
66 TTAATGCTTAAAATTTATTACTTATTTGGGGTTTGTGATGTATATTATGGACTATGGACTGGTTG
10461006 GCTTTAAATTT
131 GCTTTAAATTT
10461017 GGGACTTTAT
Statistics
Matches: 130, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
144 130 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.40
Consensus pattern (144 bp):
ACTTGACGGGCCGGTGCAAAGGAGGACTTGACAGTGGCCACACGCAAATTTTAGATTGTTTTCTG
TTAATGCTTAAAATTTATTACTTATTTGGGGTTTGTGATGTATATTATGGACTATGGACTGGTTG
GCTTTAAATTTAAA
Found at i:10473868 original size:13 final size:13
Alignment explanation
Indices: 10473850--10473896 Score: 67
Period size: 13 Copynumber: 3.6 Consensus size: 13
10473840 CATATTTATA
*
10473850 TTCATATAAATAT
1 TTCATATAAACAT
*
10473863 TTCATATAAACAC
1 TTCATATAAACAT
*
10473876 TTCATATAACCAT
1 TTCATATAAACAT
10473889 TTCATATA
1 TTCATATA
10473897 TTTATTTCCT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.43, C:0.17, G:0.00, T:0.40
Consensus pattern (13 bp):
TTCATATAAACAT
Found at i:10483804 original size:32 final size:32
Alignment explanation
Indices: 10483737--10483798 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 32
10483727 CGTATAACTC
10483737 TTAA-ATGTTTAGAATTTTATAATGGATAAAT
1 TTAAGATGTTTAGAATTTTATAATGGATAAAT
10483768 TTAAGATGTTCTAGAATTTT-T-AT-GATAAAT
1 TTAAGATGTT-TAGAATTTTATAATGGATAAAT
10483798 T
1 T
10483799 ATTAAGCTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
30 8 0.28
31 6 0.21
32 6 0.21
33 9 0.31
ACGTcount: A:0.39, C:0.02, G:0.13, T:0.47
Consensus pattern (32 bp):
TTAAGATGTTTAGAATTTTATAATGGATAAAT
Found at i:10484383 original size:26 final size:26
Alignment explanation
Indices: 10484348--10484434 Score: 97
Period size: 26 Copynumber: 3.4 Consensus size: 26
10484338 ATGATGAACT
* *
10484348 TTATTTAGCAGGCCTTGAGCCAGTGT
1 TTATTTAGCAGGCTTTGAGCCAGTGA
** * *
10484374 TTATTTAGCATACTTTAAGCCGGTGA
1 TTATTTAGCAGGCTTTGAGCCAGTGA
*
10484400 TTATTT-GTAGGCTTTGAGCCA-TGA
1 TTATTTAGCAGGCTTTGAGCCAGTGA
10484424 TTATTTAGCAG
1 TTATTTAGCAG
10484435 TTACTATGTT
Statistics
Matches: 48, Mismatches: 12, Indels: 3
0.76 0.19 0.05
Matches are distributed among these distances:
24 9 0.19
25 13 0.27
26 26 0.54
ACGTcount: A:0.23, C:0.15, G:0.23, T:0.39
Consensus pattern (26 bp):
TTATTTAGCAGGCTTTGAGCCAGTGA
Found at i:10508039 original size:30 final size:30
Alignment explanation
Indices: 10507982--10508043 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
10507972 GCTTTTTGAA
* *
10507982 AATATTTACAAAAAAAGGCATCTAATTTTT
1 AATATTTACAAAAAAAGGCACCAAATTTTT
*
10508012 AATATTTACAAAAAGA-GCAACCAAATTTTT
1 AATATTTACAAAAAAAGGC-ACCAAATTTTT
10508042 AA
1 AA
10508044 AAATAATTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 2 0.07
30 26 0.93
ACGTcount: A:0.50, C:0.11, G:0.06, T:0.32
Consensus pattern (30 bp):
AATATTTACAAAAAAAGGCACCAAATTTTT
Found at i:10520722 original size:27 final size:27
Alignment explanation
Indices: 10520691--10520750 Score: 111
Period size: 27 Copynumber: 2.2 Consensus size: 27
10520681 TCTTTCCCTC
10520691 GATCTAAATCCGTATGTTGCTTTTCTT
1 GATCTAAATCCGTATGTTGCTTTTCTT
*
10520718 GATCTAAATTCGTATGTTGCTTTTCTT
1 GATCTAAATCCGTATGTTGCTTTTCTT
10520745 GATCTA
1 GATCTA
10520751 TATAATCATA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.20, C:0.17, G:0.15, T:0.48
Consensus pattern (27 bp):
GATCTAAATCCGTATGTTGCTTTTCTT
Found at i:10542527 original size:19 final size:19
Alignment explanation
Indices: 10542503--10542541 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
10542493 TAAAATTAAT
10542503 TTTTCTAAAAATATT-TTTA
1 TTTTCT-AAAATATTATTTA
*
10542522 TTTTCTAGAATATTATTTA
1 TTTTCTAAAATATTATTTA
10542541 T
1 T
10542542 CGATCTCTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.59
Consensus pattern (19 bp):
TTTTCTAAAATATTATTTA
Found at i:10544380 original size:206 final size:206
Alignment explanation
Indices: 10544026--10544440 Score: 785
Period size: 206 Copynumber: 2.0 Consensus size: 206
10544016 GAATGAAAAA
*
10544026 ATTTCAAGTTAATAGAGTTAACGAATCCTATTTTATCATCCTAACTCGATTTAAAATTTTCTCGG
1 ATTTCAAGTTAATAGAGTTAACGAACCCTATTTTATCATCCTAACTCGATTTAAAATTTTCTCGG
*
10544091 ATCAATTCGAATCGAATATATTTGTTCAAGTTAAATTAAAAAAATGACTTTGGGTCTTTGTAGCC
66 ATCAAGTCGAATCGAATATATTTGTTCAAGTTAAATTAAAAAAATGACTTTGGGTCTTTGTAGCC
* *
10544156 ACTACCACCCACCATAATCAAATTTTCCCACCGTGATAAAATTTGTTATTAACTTTCATCCCCTC
131 ACTACCACCCACCATAATCAAAATTGCCCACCGTGATAAAATTTGTTATTAACTTTCATCCCCTC
10544221 ATAACTTATTT
196 ATAACTTATTT
10544232 ATTTCAAGTTAATAGAGTTAACGAACCCTATTTTATCATCCTAACTCGATTTAAAATTTTCTCGG
1 ATTTCAAGTTAATAGAGTTAACGAACCCTATTTTATCATCCTAACTCGATTTAAAATTTTCTCGG
10544297 ATCAAGTCGAATCGAATATATTTGTTCAAGTTAAATTAAAAAAATGACTTTGGGTCTTTGTAGCC
66 ATCAAGTCGAATCGAATATATTTGTTCAAGTTAAATTAAAAAAATGACTTTGGGTCTTTGTAGCC
*
10544362 ACTACCACCCACCATAATCAAAATTGCCCACTGTGATAAAATTTGTTATTAACTTTCATCCCCTC
131 ACTACCACCCACCATAATCAAAATTGCCCACCGTGATAAAATTTGTTATTAACTTTCATCCCCTC
10544427 ATAACTTATTT
196 ATAACTTATTT
10544438 ATT
1 ATT
10544441 AATCTTTTTT
Statistics
Matches: 204, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
206 204 1.00
ACGTcount: A:0.33, C:0.20, G:0.10, T:0.37
Consensus pattern (206 bp):
ATTTCAAGTTAATAGAGTTAACGAACCCTATTTTATCATCCTAACTCGATTTAAAATTTTCTCGG
ATCAAGTCGAATCGAATATATTTGTTCAAGTTAAATTAAAAAAATGACTTTGGGTCTTTGTAGCC
ACTACCACCCACCATAATCAAAATTGCCCACCGTGATAAAATTTGTTATTAACTTTCATCCCCTC
ATAACTTATTT
Found at i:10546017 original size:3 final size:3
Alignment explanation
Indices: 10546009--10546109 Score: 184
Period size: 3 Copynumber: 33.7 Consensus size: 3
10545999 GTTACTTTAA
10546009 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
* *
10546057 TAG TAG TAG TAG TAG TAG TAG TGG TAG TAG TAG TGG TAG TAG TAG TAG
1 TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG TAG
10546105 TAG TA
1 TAG TA
10546110 AGCTTTTAAT
Statistics
Matches: 94, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 94 1.00
ACGTcount: A:0.32, C:0.00, G:0.35, T:0.34
Consensus pattern (3 bp):
TAG
Found at i:10547040 original size:16 final size:16
Alignment explanation
Indices: 10547019--10547075 Score: 87
Period size: 16 Copynumber: 3.6 Consensus size: 16
10547009 TTTGGTTCGC
*
10547019 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
10547035 TGTATTGGATTAGAGG
1 TGTAATGGATTAGAGG
*
10547051 TGTAATGGAATAGAGG
1 TGTAATGGATTAGAGG
10547067 TGTAATGGA
1 TGTAATGGA
10547076 AAAGCTGTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (16 bp):
TGTAATGGATTAGAGG
Found at i:10547342 original size:18 final size:17
Alignment explanation
Indices: 10547321--10547355 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
10547311 TTATTATTAA
*
10547321 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
10547339 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
10547356 TCTTAANNNN
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:10562209 original size:11 final size:11
Alignment explanation
Indices: 10562193--10562222 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
10562183 TAAACTCAAG
10562193 AATTCTATTAC
1 AATTCTATTAC
10562204 AATTCTATTAC
1 AATTCTATTAC
10562215 -ATTCTATT
1 AATTCTATT
10562223 CAACCAAACA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 8 0.42
11 11 0.58
ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50
Consensus pattern (11 bp):
AATTCTATTAC
Found at i:10562266 original size:16 final size:16
Alignment explanation
Indices: 10562245--10562284 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
10562235 TGAATTACTG
*
10562245 ATTACAGCTCTATTCC
1 ATTACAACTCTATTCC
*
10562261 ATTACAACTTTATTCC
1 ATTACAACTCTATTCC
10562277 ATTACAAC
1 ATTACAAC
10562285 GAACCAAACA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.33, C:0.28, G:0.03, T:0.38
Consensus pattern (16 bp):
ATTACAACTCTATTCC
Found at i:10563396 original size:24 final size:23
Alignment explanation
Indices: 10563350--10563399 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
10563340 TTGAATATTA
*
10563350 TTTAATTTTTTTATTTATGTAAT
1 TTTAATTTTTTTATTTATATAAT
10563373 TTTAATTAATTTTTATTT-TATAAT
1 TTTAATT--TTTTTATTTATATAAT
10563397 TTT
1 TTT
10563400 TTATAAAAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
23 7 0.29
24 8 0.33
25 9 0.38
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (23 bp):
TTTAATTTTTTTATTTATATAAT
Found at i:10564096 original size:16 final size:18
Alignment explanation
Indices: 10564060--10564104 Score: 58
Period size: 16 Copynumber: 2.6 Consensus size: 18
10564050 GTAAGGGTTA
10564060 ATTTCAATTTTTTAATATT
1 ATTT-AATTTTTTAATATT
10564079 ATTTAATTTTTT-AT-TT
1 ATTTAATTTTTTAATATT
*
10564095 ATGTAATTTT
1 ATTTAATTTT
10564105 AATTAAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
16 11 0.44
17 2 0.08
18 8 0.32
19 4 0.16
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (18 bp):
ATTTAATTTTTTAATATT
Found at i:10564584 original size:724 final size:728
Alignment explanation
Indices: 10563192--10564653 Score: 2851
Period size: 724 Copynumber: 2.0 Consensus size: 728
10563182 AATTAACTAT
10563192 TTTATTTAATTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCTAAGATATTTGATTGTGTTA
1 TTTATTTAATTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCTAAGATATTTGATTGTGTTA
10563257 GCAATGGCCGGGGAATTAACTTGTCTCGATCATAAACATATTTCCGTCGAACAAATGAAAATGGT
66 GCAATGGCCGGGGAATTAACTTGTCTCGATCATAAACATATTTCCGTCGAACAAATGAAAATGGT
*
10563322 AAGGGTTAATTTCAATTTTTGAATATTATTTAATTTTTTTATTTATGTAATTTTAATTAATTTTT
131 AAGGGTTAATTTCAATTTTTGAATATTATTTAATTTTTTTATTTATGTAATTTTAATTAAATTTT
10563387 ATTTTATAATTTTTTATAAAAGTTGGTAGATCAGGTGTTACAATGTTATATTCATAATATGTCTG
196 A-TTTAT-ATTTTTTATAAAAGTTGGTAGATCAGGTGTTACAATGTTATATTCATAATATGTCTG
10563452 GTCCTCCATCACCATTGATAGAAAACTACTTGAGGAAAGTGAGTTTTTGGCACGTAGCCAATATA
259 GTCCTCCATCACCATTGATAGAAAACTACTTGAGGAAAGTGAGTTTTTGGCACGTAGCCAATATA
10563517 GGCTGGGGGTGCAAGTTGGACCCGAAACTCATCAGCGCGTTGATAAAAAGGTGGAGACCCGAGAC
324 GGCTGGGGGTGCAAGTTGGACCCGAAACTCATCAGCGCGTTGATAAAAAGGTGGAGACCCGAGAC
10563582 ACACACATTCCATCTTCTATGCGGGGAGTGTATCATCACTTTGGAGGACGTGCAGTTACAATTGG
389 ACACACATTCCATCTTCTATGCGGGGAGTGTATCATCACTTTGGAGGACGTGCAGTTACAATTGG
10563647 GACTGTCGGTGGATGTACCCGTACTCACCGGGTCCGTTCAATCTGCTTATTGGGGAGGCATATGT
454 GACTGTCGGTGGATGTACCCGTACTCACCGGGTCCGTTCAATCTGCTTATTGGGGAGGCATATGT
10563712 TACGATATTTTGGGTGCAATTCCGGATAATATTTACGAAGGTTGAATTGAGATGGGGTAGTTACG
519 TACGATATTTTGGGTGCAATTCCGGATAATATTTACGAAGGTTGAATTGAGATGGGGTAGTTACG
10563777 AGACACATTCCCGGGGCTGGGGGATGATTCGACTGAAGTAGAAAAAATACGATATGCTTGGGCAT
584 AGACACATTCCCGGGGCTGGGGGATGATTCGACTGAAGTAGAAAAAATACGATATGCTTGGGCAT
10563842 ACATCCTTAATATCATTAGAGGTTAGCTGATGTTGGACTTGTCACAAAACCTCGTACATTTGAGG
649 ACATCCTTAATATCATTAGAGGTTAGCTGATGTTGGACTTGTCACAAAACCTCGTACATTTGAGG
10563907 TGGCTGTTGAAACTC
714 TGGCTGTTGAAACTC
10563922 TTTATTTAATTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCTAAGATATTTGATTGTGTTA
1 TTTATTTAATTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCTAAGATATTTGATTGTGTTA
10563987 GCAATGGCCGGGGAATTAACTTGTCTCGATCATAAACATATTTCCGTCGAACAAATGAAAATGGT
66 GCAATGGCCGGGGAATTAACTTGTCTCGATCATAAACATATTTCCGTCGAACAAATGAAAATGGT
*
10564052 AAGGGTTAATTTCAATTTTTTAATATTATTTAA-TTTTTTATTTATGTAATTTTAATTAAATTTT
131 AAGGGTTAATTTCAATTTTTGAATATTATTTAATTTTTTTATTTATGTAATTTTAATTAAATTTT
10564116 A-TT-T-TTTTTTATAAAAGTTGGTAGATCAGGTGTTACAATGTTATATTCATAATATGTCTGGT
196 ATTTATATTTTTTATAAAAGTTGGTAGATCAGGTGTTACAATGTTATATTCATAATATGTCTGGT
10564178 CCTCCATCACCATTGATAGAAAACTACTTGAGGAAAGTGAGTTTTTGGCACGTAGCCAATATAGG
261 CCTCCATCACCATTGATAGAAAACTACTTGAGGAAAGTGAGTTTTTGGCACGTAGCCAATATAGG
10564243 CTGGGGGTGCAAGTTGGACCCGAAACTCATCAGCGCGTTGATAAAAAGGTGGAGACCCGAGACAC
326 CTGGGGGTGCAAGTTGGACCCGAAACTCATCAGCGCGTTGATAAAAAGGTGGAGACCCGAGACAC
10564308 ACACATTCCATCTTCTATGCGGGGAGTGTATCATCACTTTGGAGGACGTGCAGTTACAATTGGGA
391 ACACATTCCATCTTCTATGCGGGGAGTGTATCATCACTTTGGAGGACGTGCAGTTACAATTGGGA
10564373 CTGTCGGTGGATGTACCCGTACTCACCGGGTCCGTTCAATCTGCTTATTGGGGAGGCATATGTTA
456 CTGTCGGTGGATGTACCCGTACTCACCGGGTCCGTTCAATCTGCTTATTGGGGAGGCATATGTTA
10564438 CGATATTTTGGGTGCAATTCCGGATAATATTTACGAAGGTTGAATTGAGATGGGGTAGTTACGAG
521 CGATATTTTGGGTGCAATTCCGGATAATATTTACGAAGGTTGAATTGAGATGGGGTAGTTACGAG
10564503 ACACATTCCCGGGGCTGGGGGATGATTCGACTGAAGTAGAAAAAATACGATATGCTTGGGCATAC
586 ACACATTCCCGGGGCTGGGGGATGATTCGACTGAAGTAGAAAAAATACGATATGCTTGGGCATAC
10564568 ATCCTTAATATCATTAGAGGTTAGCTGATGTTGGACTTGTCACAAAACCTCGTACATTTGAGGTG
651 ATCCTTAATATCATTAGAGGTTAGCTGATGTTGGACTTGTCACAAAACCTCGTACATTTGAGGTG
10564633 GCTGTTGAAACTC
716 GCTGTTGAAACTC
10564646 TTTGATTT
1 TTT-ATTT
10564654 TAGAGTAGCT
Statistics
Matches: 729, Mismatches: 2, Indels: 7
0.99 0.00 0.01
Matches are distributed among these distances:
724 529 0.73
725 4 0.01
726 1 0.00
727 2 0.00
729 31 0.04
730 162 0.22
ACGTcount: A:0.28, C:0.15, G:0.22, T:0.35
Consensus pattern (728 bp):
TTTATTTAATTTTTTTCTAAATTAGTATTATTTTTTTATAATTTCTAAGATATTTGATTGTGTTA
GCAATGGCCGGGGAATTAACTTGTCTCGATCATAAACATATTTCCGTCGAACAAATGAAAATGGT
AAGGGTTAATTTCAATTTTTGAATATTATTTAATTTTTTTATTTATGTAATTTTAATTAAATTTT
ATTTATATTTTTTATAAAAGTTGGTAGATCAGGTGTTACAATGTTATATTCATAATATGTCTGGT
CCTCCATCACCATTGATAGAAAACTACTTGAGGAAAGTGAGTTTTTGGCACGTAGCCAATATAGG
CTGGGGGTGCAAGTTGGACCCGAAACTCATCAGCGCGTTGATAAAAAGGTGGAGACCCGAGACAC
ACACATTCCATCTTCTATGCGGGGAGTGTATCATCACTTTGGAGGACGTGCAGTTACAATTGGGA
CTGTCGGTGGATGTACCCGTACTCACCGGGTCCGTTCAATCTGCTTATTGGGGAGGCATATGTTA
CGATATTTTGGGTGCAATTCCGGATAATATTTACGAAGGTTGAATTGAGATGGGGTAGTTACGAG
ACACATTCCCGGGGCTGGGGGATGATTCGACTGAAGTAGAAAAAATACGATATGCTTGGGCATAC
ATCCTTAATATCATTAGAGGTTAGCTGATGTTGGACTTGTCACAAAACCTCGTACATTTGAGGTG
GCTGTTGAAACTC
Found at i:10565592 original size:126 final size:126
Alignment explanation
Indices: 10565306--10566077 Score: 1018
Period size: 126 Copynumber: 6.1 Consensus size: 126
10565296 TAATGCCAAG
* *
10565306 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* *
10565371 ATCCTGCTTGAAGCTTTTTTGACACTA-TTTTTCAGAACCATCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCTTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* * * * *
10565431 CAGCAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAATGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * ** **
10565496 ATCCTGTTTGAAGCTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTT
66 ATCCTGCTTGAAGC-TTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
* *
10565558 -AGGAACTAATGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* *
10565622 ATCCTGCGTGAAGCGTTTTTTACACTATTTTTTCAGAACCGTCTTCTC-AAATT-TTTGTTT
66 ATCCTGCTTGAAGCTTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTT-TTT
* * * * *
10565682 TAGGAACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTGTTCAGTAATTTTGTTGACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * * *
10565747 ATTCTGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
66 ATCCTGCTTGAAGCTTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
*
10565808 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
* * * * *
10565873 ATCCTGCTTGAAGCGTTTTTTATATTATTTTTTCAAAACCGTCTTTTCAAAATT-TATTTTT
66 ATCCTGCTTGAAGCTTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTAT-TTTTT
* * * ** *
10565934 CAGAAACTCCTGTAGAAAAATAGCGTCCACGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
** * * * *
10565999 ATATTGCTTGAAGCATTTCTGT-CACTATTTTTTTAGAACAGTCTTCTCAAAATTAATTTTTT
66 ATCCTGCTTGAAGC-TTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATT-ATTTTTT
* *
10566061 -AGAAACTACTATAGAAA
1 CAGGAACTACTGTAGAAA
10566078 TAAACACAAA
Statistics
Matches: 566, Mismatches: 71, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
123 1 0.00
124 6 0.01
125 209 0.37
126 310 0.55
127 39 0.07
128 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (126 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
ATCCTGCTTGAAGCTTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTATTTTTT
Found at i:10565760 original size:251 final size:250
Alignment explanation
Indices: 10565306--10566077 Score: 1025
Period size: 251 Copynumber: 3.1 Consensus size: 250
10565296 TAATGCCAAG
*
10565306 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
*
10565371 ATCCTGCTTGAAGC-TTTTTTGACACTA-TTTTTCAGAACCATCTTCTCAAAATTATTTTTTCAG
66 ATCCTGCTTGAAGCGTTTTTT-ACACTATTTTTTCAGAACCGTCTTCTCAAAATT-TTTTTTCAG
* * * * *
10565434 CAACTACTGTAGAAAAAGAGCGTTCACGTGGGAGCTTTTTTTAGTAATTTTGCTGACAATGCATC
129 AAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATT
*
10565499 CTGTTTGAAGCTTTTTTTTACACTATTTTTTCAGAATCGTCTTCTCAAAAAAAAATTTT
194 CTGCTTGAAGC-TTTTTTTACACTATTTTTTCAGAA-CGTCTTCTCAAAAAAAAATTTT
* * *
10565558 -AGGAACTAATGTAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAACAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
* * *
10565622 ATCCTGCGTGAAGCGTTTTTTACACTATTTTTTCAGAACCGTCTTCTC-AAATTTTTGTTTTAGG
66 ATCCTGCTTGAAGCGTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTT-TTTCAGA
* * *
10565686 AACTAATGTAGAAAAAGAGCGTCCACGTGGGAGCTTTGTTCAGTAATTTTGTTGACAGTGCATTC
130 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATTC
* * * ** **
10565751 TGCTTGAAGCATTTTTGACACTATTTTTTCAGAACCATCTTCTCAAAATTATTTTTT
195 TGCTTGAAGCTTTTTTTACACTATTTTTTCAGAA-CGTCTTCTCAAAAAAAAATTTT
10565808 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
1 CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
* * * *
10565873 ATCCTGCTTGAAGCGTTTTTTATATTATTTTTTCAAAACCGTCTTTTCAAAATTTATTTTTCAGA
66 ATCCTGCTTGAAGCGTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTT-TTTTTCAGA
* * ** * *
10565938 AACTCCTGTAGAAAAATAGCGTCCACGTGACAGCTTTTTTCAGTACTTTTGCTAACAGTGCATAT
130 AACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCAT-T
* * * ** *
10566003 -TGCTTGAAGCATTTCTGT-CACTATTTTTTTAGAACAGTCTTCTCAAAATTAATTTTT
194 CTGCTTGAAGC-TTTTTTTACACTATTTTTTCAGAAC-GTCTTCTCAAAAAAAAATTTT
* * *
10566060 TAGAAACTACTATAGAAA
1 CAGGAACTACTGTAGAAA
10566078 TAAACACAAA
Statistics
Matches: 458, Mismatches: 53, Indels: 18
0.87 0.10 0.03
Matches are distributed among these distances:
250 42 0.09
251 261 0.57
252 149 0.33
253 6 0.01
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (250 bp):
CAGGAACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTAATAGTGC
ATCCTGCTTGAAGCGTTTTTTACACTATTTTTTCAGAACCGTCTTCTCAAAATTTTTTTTCAGAA
ACTACTGTAGAAAAAGAGCGTCCACGTGGGAGCTTTTTTCAGTAATTTTGCTGACAGTGCATTCT
GCTTGAAGCTTTTTTTACACTATTTTTTCAGAACGTCTTCTCAAAAAAAAATTTT
Found at i:10566226 original size:33 final size:32
Alignment explanation
Indices: 10566163--10566248 Score: 129
Period size: 34 Copynumber: 2.7 Consensus size: 32
10566153 CTAAACACAA
10566163 AATTATTTTTTAAAAACCCTAAACCTTAATTT
1 AATTATTTTTTAAAAACCCTAAACCTTAATTT
10566195 AATTAATTTTCTTAAAAACCCTAAACC-TAATTT
1 AATT-ATTTT-TTAAAAACCCTAAACCTTAATTT
* *
10566228 AAATATTTTTTAAAATCCCTA
1 AATTATTTTTTAAAAACCCTA
10566249 GACCCTAAAA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
31 11 0.22
32 9 0.18
33 14 0.28
34 16 0.32
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.42
Consensus pattern (32 bp):
AATTATTTTTTAAAAACCCTAAACCTTAATTT
Found at i:10566330 original size:8 final size:7
Alignment explanation
Indices: 10566285--10566332 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 7
10566275 TATTTTAACA
10566285 AAACCCT
1 AAACCCT
10566292 -AACCCT
1 AAACCCT
10566298 -AACCCT
1 AAACCCT
10566304 AAACCACT
1 AAACC-CT
10566312 AAAACCCT
1 -AAACCCT
10566320 AAACCCAT
1 AAACCC-T
10566328 AAACC
1 AAACC
10566333 ATAGGCACTA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
6 12 0.32
7 10 0.27
8 10 0.27
9 5 0.14
ACGTcount: A:0.46, C:0.42, G:0.00, T:0.12
Consensus pattern (7 bp):
AAACCCT
Found at i:10569549 original size:19 final size:16
Alignment explanation
Indices: 10569530--10569563 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10569520 AGATTAAATT
10569530 AATTAA-CTAAATGCA
1 AATTAATCTAAATGCA
10569545 AATTAATCTAAATGCA
1 AATTAATCTAAATGCA
10569561 AAT
1 AAT
10569564 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.12, G:0.06, T:0.29
Consensus pattern (16 bp):
AATTAATCTAAATGCA
Found at i:10572705 original size:14 final size:15
Alignment explanation
Indices: 10572672--10572705 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
10572662 CGCCTTACGT
10572672 AAAA-CGCCGCTAAA
1 AAAACCGCCGCTAAA
10572686 AAAACCGCCGC-AAA
1 AAAACCGCCGCTAAA
10572700 AAAACC
1 AAAACC
10572706 TAAGCCTAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.53, C:0.32, G:0.12, T:0.03
Consensus pattern (15 bp):
AAAACCGCCGCTAAA
Found at i:10572909 original size:41 final size:41
Alignment explanation
Indices: 10572740--10572900 Score: 225
Period size: 41 Copynumber: 3.9 Consensus size: 41
10572730 CCTTTTTGGG
* * *
10572740 CTTTAGCGGCGTTTTTTTAAAAAACACCGCTAATGCTCAGAT
1 CTTTAGCGGCG-TTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* *
10572782 CTTTAGCGGTGTTTTTGAAAAAGTGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
* *
10572823 CTTTAG-GAGCGTTTTTGAAAAGGCGCAGCTAATGCTCAGAT
1 CTTTAGCG-GCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
*
10572864 CTTTAGCGGCGTTTTTGGAAAAGCGCCGCTAATGCTC
1 CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTC
10572901 GGGGCTTTAA
Statistics
Matches: 105, Mismatches: 12, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 1 0.01
41 93 0.89
42 11 0.10
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.32
Consensus pattern (41 bp):
CTTTAGCGGCGTTTTTGAAAAAGCGCCGCTAATGCTCAGAT
Found at i:10573050 original size:26 final size:26
Alignment explanation
Indices: 10573002--10573052 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
10572992 AAAATGGATA
** * *
10573002 AATTTGAAATAATGACACGTAGAAAT
1 AATTTGAAATAAAAAAACATAGAAAT
10573028 AATTTGAAATAAAAAAACATAGAAA
1 AATTTGAAATAAAAAAACATAGAAA
10573053 AATATTTGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.59, C:0.06, G:0.12, T:0.24
Consensus pattern (26 bp):
AATTTGAAATAAAAAAACATAGAAAT
Found at i:10573340 original size:14 final size:15
Alignment explanation
Indices: 10573312--10573344 Score: 59
Period size: 14 Copynumber: 2.3 Consensus size: 15
10573302 AAGGTTTATA
10573312 GATTATGGAATTAGG
1 GATTATGGAATTAGG
10573327 GATTATGG-ATTAGG
1 GATTATGGAATTAGG
10573341 GATT
1 GATT
10573345 CTGATTTAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.36
Consensus pattern (15 bp):
GATTATGGAATTAGG
Found at i:10573395 original size:7 final size:7
Alignment explanation
Indices: 10573364--10573397 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
10573354 GGGTTGTGAT
10573364 TTAGGGG
1 TTAGGGG
*
10573371 TTAAGGG
1 TTAGGGG
*
10573378 TTAGAGG
1 TTAGGGG
10573385 TTAGGGG
1 TTAGGGG
10573392 TTAGGG
1 TTAGGG
10573398 ATTTAAGGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.21, C:0.00, G:0.50, T:0.29
Consensus pattern (7 bp):
TTAGGGG
Found at i:10573654 original size:46 final size:46
Alignment explanation
Indices: 10573604--10573694 Score: 173
Period size: 46 Copynumber: 2.0 Consensus size: 46
10573594 AGTGATTTAG
*
10573604 GGTTTAGAGATTCAGGGTCGAGTTAGAGTTTAAGGTTTTGATTAAA
1 GGTTTAGAGATTCAGGGTCGAGTTAGAGTTTAAGGTTTAGATTAAA
10573650 GGTTTAGAGATTCAGGGTCGAGTTAGAGTTTAAGGTTTAGATTAA
1 GGTTTAGAGATTCAGGGTCGAGTTAGAGTTTAAGGTTTAGATTAA
10573695 TTAGTATTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 44 1.00
ACGTcount: A:0.29, C:0.04, G:0.31, T:0.36
Consensus pattern (46 bp):
GGTTTAGAGATTCAGGGTCGAGTTAGAGTTTAAGGTTTAGATTAAA
Found at i:10574655 original size:21 final size:20
Alignment explanation
Indices: 10574631--10574670 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10574621 ATAAACCCCG
10574631 AAATCCCCAACTTTCCCCCTA
1 AAATCCCCAA-TTTCCCCCTA
**
10574652 AAATCCTTAATTTCCCCCT
1 AAATCCCCAATTTCCCCCT
10574671 TTGCAATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.28, C:0.42, G:0.00, T:0.30
Consensus pattern (20 bp):
AAATCCCCAATTTCCCCCTA
Found at i:10574796 original size:36 final size:36
Alignment explanation
Indices: 10574750--10574818 Score: 129
Period size: 36 Copynumber: 1.9 Consensus size: 36
10574740 AGTGGATCTA
10574750 TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
1 TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
*
10574786 TTATGGATGTTTTAGATCTTTATGTTATGATTT
1 TTATAGATGTTTTAGATCTTTATGTTATGATTT
10574819 TAGTTCCTCA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.23, C:0.03, G:0.17, T:0.57
Consensus pattern (36 bp):
TTATAGATGTTTTAGATCTTTATGTTATGATTTGAT
Found at i:10574809 original size:19 final size:19
Alignment explanation
Indices: 10574744--10574809 Score: 66
Period size: 19 Copynumber: 3.5 Consensus size: 19
10574734 GGTTTTAGTG
*
10574744 GATCTATTATAGATGTTTTA
1 GATCT-TTATGGATGTTTTA
* *
10574764 GATCTTTATGTTATGATTT-
1 GATCTTTATG-GATGTTTTA
10574783 GA--TTTATGGATGTTTTA
1 GATCTTTATGGATGTTTTA
10574800 GATCTTTATG
1 GATCTTTATG
10574810 TTATGATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 9
0.73 0.10 0.18
Matches are distributed among these distances:
16 6 0.16
17 8 0.22
19 12 0.32
20 11 0.30
ACGTcount: A:0.24, C:0.05, G:0.18, T:0.53
Consensus pattern (19 bp):
GATCTTTATGGATGTTTTA
Found at i:10574821 original size:21 final size:21
Alignment explanation
Indices: 10574759--10574821 Score: 75
Period size: 17 Copynumber: 3.3 Consensus size: 21
10574749 ATTATAGATG
10574759 TTTTAGATCTTTATGTTATGA
1 TTTTAGATCTTTATGTTATGA
*
10574780 -TTT-GA--TTTATG-GATG-
1 TTTTAGATCTTTATGTTATGA
10574795 TTTTAGATCTTTATGTTATGA
1 TTTTAGATCTTTATGTTATGA
10574816 TTTTAG
1 TTTTAG
10574822 TTCCTCAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 12
0.71 0.04 0.25
Matches are distributed among these distances:
16 6 0.18
17 8 0.24
19 8 0.24
20 6 0.18
21 6 0.18
ACGTcount: A:0.22, C:0.03, G:0.17, T:0.57
Consensus pattern (21 bp):
TTTTAGATCTTTATGTTATGA
Found at i:10575374 original size:2 final size:2
Alignment explanation
Indices: 10575367--10575402 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
10575357 AACAAGTATC
10575367 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
10575403 GAATGCCGCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:10578868 original size:43 final size:42
Alignment explanation
Indices: 10578804--10578943 Score: 181
Period size: 43 Copynumber: 3.2 Consensus size: 42
10578794 GTTATGTTTT
** * *
10578804 TAGCGGCGTTTGTGATAAAAAGCGTCACTAAAGGTCATGATCTA
1 TAGCGGCGTTTGTG-GGAAAAGCG-CGCTAAAGGTCATGGTCTA
10578848 TAGCGGCGTTTGTGGGAAAAGCGCTGCTAAAGGTCATGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCGC-GCTAAAGGTCATGGTCTA
** *
10578891 TAGCGGCAATTGTGGGAAAAGCGCCGCTAAAGGTCGTGGTCTA
1 TAGCGGCGTTTGTGGGAAAAGCG-CGCTAAAGGTCATGGTCTA
10578934 TAGCGGCGTT
1 TAGCGGCGTT
10578944 CGCTAAAGGT
Statistics
Matches: 85, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
42 1 0.01
43 69 0.81
44 15 0.18
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGGAAAAGCGCGCTAAAGGTCATGGTCTA
Found at i:10582186 original size:15 final size:16
Alignment explanation
Indices: 10582168--10582201 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
10582158 AGATTCAATT
10582168 AATTAA-CTAAATGCA
1 AATTAACCTAAATGCA
10582183 AATTAACCTAAATGCA
1 AATTAACCTAAATGCA
10582199 AAT
1 AAT
10582202 GAGATGAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.53, C:0.15, G:0.06, T:0.26
Consensus pattern (16 bp):
AATTAACCTAAATGCA
Found at i:10594290 original size:52 final size:52
Alignment explanation
Indices: 10594212--10594427 Score: 351
Period size: 52 Copynumber: 4.2 Consensus size: 52
10594202 AATCTAACCG
* * * *
10594212 ATAACACGTCTCGAAACTAAGTGTCTAGCCTGTAGGCTATACATTCGCTCCA
1 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCCCCA
**
10594264 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATTTGCCCCA
1 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCCCCA
* *
10594316 ATAACATGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCTCCA
1 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCCCCA
*
10594368 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCACCCCA
1 ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCCCCA
10594420 ATAACACG
1 ATAACACG
10594428 TTAAAATAGG
Statistics
Matches: 153, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
52 153 1.00
ACGTcount: A:0.29, C:0.31, G:0.17, T:0.24
Consensus pattern (52 bp):
ATAACACGCCTCGACACTAAGTGTCTAGCCTGTAGGCTATACATCCGCCCCA
Found at i:10595377 original size:11 final size:11
Alignment explanation
Indices: 10595362--10595391 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
10595352 TTTATTCTTC
10595362 ATTTAATTTTG
1 ATTTAATTTTG
*
10595373 TTTTAATTTTG
1 ATTTAATTTTG
10595384 ATTTAATT
1 ATTTAATT
10595392 ACAAAATTGC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.67
Consensus pattern (11 bp):
ATTTAATTTTG
Found at i:10599847 original size:88 final size:88
Alignment explanation
Indices: 10599698--10599961 Score: 528
Period size: 88 Copynumber: 3.0 Consensus size: 88
10599688 GCGCTTTGAC
10599698 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
1 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
10599763 TCAAAGACAAAATTAAAAGGAAG
66 TCAAAGACAAAATTAAAAGGAAG
10599786 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
1 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
10599851 TCAAAGACAAAATTAAAAGGAAG
66 TCAAAGACAAAATTAAAAGGAAG
10599874 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
1 GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
10599939 TCAAAGACAAAATTAAAAGGAAG
66 TCAAAGACAAAATTAAAAGGAAG
10599962 ATAAGCAGCG
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 176 1.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.31
Consensus pattern (88 bp):
GTTTCATTGGTTCAATCTGGACATATCTGTTAAATGCCGTTTGACATGGCATAATATGATTCACC
TCAAAGACAAAATTAAAAGGAAG
Found at i:10601721 original size:26 final size:24
Alignment explanation
Indices: 10601685--10601738 Score: 90
Period size: 26 Copynumber: 2.2 Consensus size: 24
10601675 AATATTTAAA
10601685 TTAAAAAAATAGATATGATAACTTCT
1 TTAAAAAAATAGATATGATAA-TT-T
10601711 TTAAAAAAATAGATATGATAATTT
1 TTAAAAAAATAGATATGATAATTT
10601735 TTAA
1 TTAA
10601739 TTTTTTAATG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 5 0.18
25 2 0.07
26 21 0.75
ACGTcount: A:0.52, C:0.04, G:0.07, T:0.37
Consensus pattern (24 bp):
TTAAAAAAATAGATATGATAATTT
Found at i:10602782 original size:14 final size:15
Alignment explanation
Indices: 10602733--10602793 Score: 54
Period size: 15 Copynumber: 4.1 Consensus size: 15
10602723 TGTTTGATAA
*
10602733 ATTGAAAAATTAAAT
1 ATTGAAAAATTAAGT
**
10602748 ACTAAAAAAATTGAA-T
1 A-TTGAAAAATT-AAGT
*
10602764 GTTGAAAAA-TAAGT
1 ATTGAAAAATTAAGT
10602778 ATTGAAAAATTAAGT
1 ATTGAAAAATTAAGT
10602793 A
1 A
10602794 CTAAATTTAA
Statistics
Matches: 36, Mismatches: 6, Indels: 8
0.72 0.12 0.16
Matches are distributed among these distances:
13 2 0.06
14 10 0.28
15 13 0.36
16 9 0.25
17 2 0.06
ACGTcount: A:0.57, C:0.02, G:0.11, T:0.30
Consensus pattern (15 bp):
ATTGAAAAATTAAGT
Found at i:10604910 original size:12 final size:12
Alignment explanation
Indices: 10604893--10604917 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
10604883 TGCACCAAGT
10604893 AGGGTCTCAGGA
1 AGGGTCTCAGGA
10604905 AGGGTCTCAGGA
1 AGGGTCTCAGGA
10604917 A
1 A
10604918 AGGGAAGTGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.16, G:0.40, T:0.16
Consensus pattern (12 bp):
AGGGTCTCAGGA
Found at i:10612844 original size:12 final size:12
Alignment explanation
Indices: 10612827--10613058 Score: 329
Period size: 12 Copynumber: 19.3 Consensus size: 12
10612817 AAACACACAA
10612827 ACATACATACAT
1 ACATACATACAT
*
10612839 ACATACACACAT
1 ACATACATACAT
10612851 ACATACATACAT
1 ACATACATACAT
*
10612863 ACATACACACAT
1 ACATACATACAT
*
10612875 ACATACATACAC
1 ACATACATACAT
10612887 ACATACATACAT
1 ACATACATACAT
* *
10612899 ACACATATACAT
1 ACATACATACAT
*
10612911 ACATACACACAT
1 ACATACATACAT
*
10612923 ACATACATACAC
1 ACATACATACAT
*
10612935 ACATACACACAT
1 ACATACATACAT
10612947 ACATACATACAT
1 ACATACATACAT
* *
10612959 ACATACACACAG
1 ACATACATACAT
*
10612971 ACATACATACAC
1 ACATACATACAT
*
10612983 ACATACATACAC
1 ACATACATACAT
*
10612995 ACATACATACAG
1 ACATACATACAT
*
10613007 ACATACATACAG
1 ACATACATACAT
*
10613019 ACATACATACAG
1 ACATACATACAT
10613031 ACATACATACAT
1 ACATACATACAT
10613043 ACATACATACAT
1 ACATACATACAT
10613055 ACAT
1 ACAT
10613059 NNNNNNNNNN
Statistics
Matches: 198, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 198 1.00
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (12 bp):
ACATACATACAT
Found at i:10612852 original size:16 final size:16
Alignment explanation
Indices: 10612819--10613058 Score: 345
Period size: 16 Copynumber: 15.0 Consensus size: 16
10612809 TTCGTAGAAA
*
10612819 ACACACAAACATACAT
1 ACACACATACATACAT
* *
10612835 ACATACATACACACAT
1 ACACACATACATACAT
*
10612851 ACATACATACATACAT
1 ACACACATACATACAT
10612867 ACACACATACATACAT
1 ACACACATACATACAT
10612883 ACACACATACATACAT
1 ACACACATACATACAT
*
10612899 ACACATATACATACAT
1 ACACACATACATACAT
10612915 ACACACATACATACAT
1 ACACACATACATACAT
*
10612931 ACACACATACACACAT
1 ACACACATACATACAT
*
10612947 ACATACATACATACAT
1 ACACACATACATACAT
*
10612963 ACACACAGACATACAT
1 ACACACATACATACAT
*
10612979 ACACACATACATACAC
1 ACACACATACATACAT
* *
10612995 ACATACATACAGACAT
1 ACACACATACATACAT
* *
10613011 ACATACAGACATACAT
1 ACACACATACATACAT
*
10613027 ACAGACATACATACAT
1 ACACACATACATACAT
*
10613043 ACATACATACATACAT
1 ACACACATACATACAT
10613059 NNNNNNNNNN
Statistics
Matches: 202, Mismatches: 22, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 202 1.00
ACGTcount: A:0.50, C:0.29, G:0.02, T:0.19
Consensus pattern (16 bp):
ACACACATACATACAT
Found at i:10620018 original size:8 final size:8
Alignment explanation
Indices: 10620005--10622766 Score: 5231
Period size: 8 Copynumber: 345.5 Consensus size: 8
10619995 NNNNNNNNNN
10620005 CATACATA
1 CATACATA
10620013 CATACATA
1 CATACATA
10620021 CATACATA
1 CATACATA
10620029 CATACATA
1 CATACATA
10620037 CATACATA
1 CATACATA
10620045 CATACATA
1 CATACATA
10620053 CATACATA
1 CATACATA
10620061 CATACATA
1 CATACATA
10620069 CATACATA
1 CATACATA
10620077 CATACATA
1 CATACATA
10620085 CATACATA
1 CATACATA
10620093 CATACATA
1 CATACATA
10620101 CATACATA
1 CATACATA
10620109 CATACATA
1 CATACATA
10620117 CATACATA
1 CATACATA
10620125 CATACATA
1 CATACATA
10620133 CATACATA
1 CATACATA
10620141 CATACATA
1 CATACATA
10620149 CATACATA
1 CATACATA
10620157 CATACATA
1 CATACATA
10620165 CATACATA
1 CATACATA
10620173 CATACATA
1 CATACATA
10620181 CATACATA
1 CATACATA
10620189 CATACATA
1 CATACATA
10620197 CATACATA
1 CATACATA
10620205 CATACATA
1 CATACATA
10620213 CATACATA
1 CATACATA
10620221 CATACATA
1 CATACATA
10620229 CATACATA
1 CATACATA
10620237 CATACATA
1 CATACATA
10620245 CATACATA
1 CATACATA
10620253 CATACATA
1 CATACATA
10620261 CATACATA
1 CATACATA
10620269 CATACATA
1 CATACATA
10620277 CATACATA
1 CATACATA
10620285 CATACATA
1 CATACATA
10620293 CATACATA
1 CATACATA
10620301 CATACATA
1 CATACATA
10620309 CATACATA
1 CATACATA
10620317 CATACATA
1 CATACATA
10620325 CATACATA
1 CATACATA
10620333 CATACATA
1 CATACATA
10620341 CATACATA
1 CATACATA
10620349 CATACATA
1 CATACATA
10620357 CATACATA
1 CATACATA
10620365 CATACATA
1 CATACATA
10620373 CATACATA
1 CATACATA
10620381 CATACATA
1 CATACATA
10620389 CATACATA
1 CATACATA
10620397 CATACATA
1 CATACATA
10620405 CATACATA
1 CATACATA
10620413 CATACATA
1 CATACATA
10620421 CATACATA
1 CATACATA
10620429 CATACATA
1 CATACATA
10620437 CATACATA
1 CATACATA
10620445 CATACATA
1 CATACATA
10620453 CATACATA
1 CATACATA
10620461 CATACATA
1 CATACATA
10620469 CATACATA
1 CATACATA
10620477 CATACATA
1 CATACATA
10620485 CATACATA
1 CATACATA
10620493 CATACATA
1 CATACATA
10620501 CATACATA
1 CATACATA
10620509 CATACATA
1 CATACATA
10620517 CATACATA
1 CATACATA
10620525 CATACATA
1 CATACATA
10620533 CATACATA
1 CATACATA
10620541 CATACATA
1 CATACATA
10620549 CATACATA
1 CATACATA
10620557 CATACATA
1 CATACATA
10620565 CATACATA
1 CATACATA
10620573 CATACATA
1 CATACATA
10620581 CATACATA
1 CATACATA
10620589 CATACATA
1 CATACATA
10620597 CATACATA
1 CATACATA
10620605 CATACATA
1 CATACATA
10620613 CATACATA
1 CATACATA
10620621 CATACATA
1 CATACATA
10620629 CATACATA
1 CATACATA
10620637 CATACATA
1 CATACATA
10620645 CATACATA
1 CATACATA
10620653 CATACATA
1 CATACATA
10620661 CATACATA
1 CATACATA
10620669 CATACATA
1 CATACATA
10620677 CATACATA
1 CATACATA
10620685 CATACATA
1 CATACATA
10620693 CATACATA
1 CATACATA
10620701 CATACATA
1 CATACATA
10620709 CATACATA
1 CATACATA
10620717 CATACATA
1 CATACATA
10620725 CATACATA
1 CATACATA
10620733 CATACATA
1 CATACATA
10620741 CATACATA
1 CATACATA
10620749 CATACATA
1 CATACATA
10620757 CATACATA
1 CATACATA
10620765 CATACATA
1 CATACATA
10620773 CATACATA
1 CATACATA
10620781 CATACATA
1 CATACATA
10620789 CATACATA
1 CATACATA
10620797 CATACATA
1 CATACATA
10620805 CATACATA
1 CATACATA
10620813 CATACATA
1 CATACATA
10620821 CATACATA
1 CATACATA
10620829 CATACATA
1 CATACATA
10620837 CATACATA
1 CATACATA
10620845 CATACATA
1 CATACATA
10620853 CATACATA
1 CATACATA
10620861 CATACATA
1 CATACATA
10620869 CATACATA
1 CATACATA
10620877 CATACATA
1 CATACATA
10620885 CATACATA
1 CATACATA
10620893 CATACATA
1 CATACATA
10620901 CATACATA
1 CATACATA
10620909 CATACATA
1 CATACATA
10620917 CATACATA
1 CATACATA
10620925 CATACATA
1 CATACATA
10620933 CATACATA
1 CATACATA
10620941 CATACATA
1 CATACATA
10620949 CATACATA
1 CATACATA
10620957 CATACATA
1 CATACATA
10620965 CATACATA
1 CATACATA
10620973 CATACATA
1 CATACATA
10620981 CATACATA
1 CATACATA
10620989 CATACATA
1 CATACATA
10620997 CATACATA
1 CATACATA
10621005 CATACATA
1 CATACATA
10621013 CATACATA
1 CATACATA
10621021 CATACATA
1 CATACATA
10621029 CATACATA
1 CATACATA
10621037 CATACATA
1 CATACATA
10621045 CATACATA
1 CATACATA
10621053 CATACATA
1 CATACATA
10621061 CATACATA
1 CATACATA
10621069 CATACATA
1 CATACATA
10621077 CATACATA
1 CATACATA
10621085 CATACATA
1 CATACATA
10621093 CATACATA
1 CATACATA
10621101 CATACATA
1 CATACATA
10621109 CATACATA
1 CATACATA
10621117 CATACATA
1 CATACATA
10621125 CATACATA
1 CATACATA
10621133 CATACATA
1 CATACATA
10621141 CATACATA
1 CATACATA
10621149 CATACATA
1 CATACATA
10621157 CATACATA
1 CATACATA
10621165 CATACATA
1 CATACATA
10621173 CATACATA
1 CATACATA
10621181 CATACATA
1 CATACATA
10621189 CATACATA
1 CATACATA
10621197 CATACATA
1 CATACATA
10621205 CATACATA
1 CATACATA
10621213 CATACATA
1 CATACATA
10621221 CATACATA
1 CATACATA
10621229 CATACATA
1 CATACATA
10621237 CATACATA
1 CATACATA
10621245 CATACATA
1 CATACATA
10621253 CATACATA
1 CATACATA
10621261 CATACATA
1 CATACATA
10621269 CATACATA
1 CATACATA
10621277 CATACATA
1 CATACATA
10621285 CATACATA
1 CATACATA
10621293 CATACATA
1 CATACATA
10621301 CATACATA
1 CATACATA
10621309 CATACATA
1 CATACATA
10621317 CATACATA
1 CATACATA
10621325 CATACATA
1 CATACATA
10621333 CATACATA
1 CATACATA
10621341 CATACATA
1 CATACATA
10621349 CATACATA
1 CATACATA
10621357 CATACATA
1 CATACATA
10621365 CATACATA
1 CATACATA
10621373 CATACATA
1 CATACATA
*
10621381 CACACATA
1 CATACATA
10621389 CATACATA
1 CATACATA
*
10621397 CATACACA
1 CATACATA
10621405 CATACATA
1 CATACATA
10621413 CATACATA
1 CATACATA
*
10621421 CATACACA
1 CATACATA
10621429 CATACATA
1 CATACATA
*
10621437 CACACATA
1 CATACATA
*
10621445 CATACACA
1 CATACATA
*
10621453 CCTACATA
1 CATACATA
*
10621461 CACACATA
1 CATACATA
*
10621469 CATACACA
1 CATACATA
10621477 CATACATA
1 CATACATA
*
10621485 CACACATA
1 CATACATA
*
10621493 CATACACA
1 CATACATA
10621501 CATACATA
1 CATACATA
*
10621509 CACACATA
1 CATACATA
*
10621517 CATACACA
1 CATACATA
*
10621525 CACACATA
1 CATACATA
10621533 CATACATA
1 CATACATA
10621541 CATACATA
1 CATACATA
10621549 CATACATA
1 CATACATA
10621557 CATACATA
1 CATACATA
10621565 CATACATA
1 CATACATA
10621573 CATACATA
1 CATACATA
10621581 CATACATA
1 CATACATA
10621589 CATACATA
1 CATACATA
10621597 CATACATA
1 CATACATA
10621605 CATACATA
1 CATACATA
10621613 CATACATA
1 CATACATA
10621621 CATACATA
1 CATACATA
10621629 CATACATA
1 CATACATA
10621637 CATACATA
1 CATACATA
10621645 CATACATA
1 CATACATA
10621653 CATACATA
1 CATACATA
10621661 CATACATA
1 CATACATA
10621669 CATACATA
1 CATACATA
10621677 CATACATA
1 CATACATA
10621685 CATACATA
1 CATACATA
10621693 CATACATA
1 CATACATA
10621701 CATACATA
1 CATACATA
10621709 CATACATA
1 CATACATA
10621717 CATACATA
1 CATACATA
10621725 CATACATA
1 CATACATA
10621733 CATACATA
1 CATACATA
10621741 CATACATA
1 CATACATA
10621749 CATACATA
1 CATACATA
10621757 CATACATA
1 CATACATA
10621765 CATACATA
1 CATACATA
10621773 CATACATA
1 CATACATA
10621781 CATACATA
1 CATACATA
10621789 CATACATA
1 CATACATA
10621797 CATACATA
1 CATACATA
10621805 CATACATA
1 CATACATA
10621813 CATACATA
1 CATACATA
10621821 CATACATA
1 CATACATA
10621829 CATACATA
1 CATACATA
10621837 CATACATA
1 CATACATA
10621845 CATACATA
1 CATACATA
10621853 CATACATA
1 CATACATA
10621861 CATACATA
1 CATACATA
10621869 CATACATA
1 CATACATA
10621877 CATACATA
1 CATACATA
10621885 CATACATA
1 CATACATA
10621893 CATACATA
1 CATACATA
10621901 CATACATA
1 CATACATA
10621909 CATACATA
1 CATACATA
10621917 CATACATA
1 CATACATA
10621925 CATACATA
1 CATACATA
10621933 CATACATA
1 CATACATA
10621941 CATACATA
1 CATACATA
10621949 CATACATA
1 CATACATA
10621957 CATACATA
1 CATACATA
10621965 CATACATA
1 CATACATA
10621973 CATACATA
1 CATACATA
10621981 CATACATA
1 CATACATA
10621989 CATACATA
1 CATACATA
10621997 CATACATA
1 CATACATA
10622005 CATACATA
1 CATACATA
10622013 CATACATA
1 CATACATA
10622021 CATACATA
1 CATACATA
10622029 CATACATA
1 CATACATA
10622037 CATACATA
1 CATACATA
10622045 CATACATA
1 CATACATA
10622053 CATACATA
1 CATACATA
10622061 CATACATA
1 CATACATA
10622069 CATACATA
1 CATACATA
10622077 CATACATA
1 CATACATA
10622085 CATACATA
1 CATACATA
10622093 CATACATA
1 CATACATA
10622101 CATACATA
1 CATACATA
10622109 CATACATA
1 CATACATA
10622117 CATACATA
1 CATACATA
10622125 CATACATA
1 CATACATA
10622133 CATACATA
1 CATACATA
10622141 CATACATA
1 CATACATA
10622149 CATACATA
1 CATACATA
10622157 CATACATA
1 CATACATA
10622165 CATACATA
1 CATACATA
10622173 CATACATA
1 CATACATA
10622181 CATACATA
1 CATACATA
10622189 CATACATA
1 CATACATA
10622197 CATACATA
1 CATACATA
10622205 CATACATA
1 CATACATA
10622213 CATACATA
1 CATACATA
10622221 CATACATA
1 CATACATA
10622229 CATACATA
1 CATACATA
10622237 CATACATA
1 CATACATA
10622245 CATACATA
1 CATACATA
10622253 CATACATA
1 CATACATA
10622261 CATACATA
1 CATACATA
10622269 CATACATA
1 CATACATA
10622277 CATACATA
1 CATACATA
10622285 CATACATA
1 CATACATA
10622293 CATACATA
1 CATACATA
10622301 CATACATA
1 CATACATA
10622309 CATACATA
1 CATACATA
10622317 CATACATA
1 CATACATA
10622325 CATACATA
1 CATACATA
10622333 CATACATA
1 CATACATA
10622341 CATACATA
1 CATACATA
10622349 CATACATA
1 CATACATA
10622357 CATACATA
1 CATACATA
10622365 CATACATA
1 CATACATA
10622373 CATACATA
1 CATACATA
10622381 CATACATA
1 CATACATA
10622389 CATACATA
1 CATACATA
10622397 CATACATA
1 CATACATA
10622405 CATACATA
1 CATACATA
10622413 CATACATA
1 CATACATA
10622421 CATACATA
1 CATACATA
10622429 CATACATA
1 CATACATA
10622437 CATACATA
1 CATACATA
10622445 CATACATA
1 CATACATA
10622453 CATACATA
1 CATACATA
10622461 CATACATA
1 CATACATA
10622469 CATACATA
1 CATACATA
10622477 CATACATA
1 CATACATA
10622485 CATACATA
1 CATACATA
10622493 CATACATA
1 CATACATA
10622501 CATACATA
1 CATACATA
10622509 CATACATA
1 CATACATA
10622517 CATACATA
1 CATACATA
10622525 CATACATA
1 CATACATA
10622533 CATACATA
1 CATACATA
10622541 CATACATA
1 CATACATA
10622549 CATACATA
1 CATACATA
*
10622557 CATATATA
1 CATACATA
*
10622565 CATACACA
1 CATACATA
10622573 CATACATA
1 CATACATA
10622581 CATACATA
1 CATACATA
10622589 CATACATA
1 CATACATA
*
10622597 CATACCTA
1 CATACATA
10622605 CATACATA
1 CATACATA
*
10622613 GATACATA
1 CATACATA
*
10622621 GATACATA
1 CATACATA
*
10622629 TATACATA
1 CATACATA
10622637 CATACATA
1 CATACATA
10622645 CATACATA
1 CATACATA
*
10622653 CGTAC--A
1 CATACATA
* *
10622659 CACACACA
1 CATACATA
* *
10622667 CACACACA
1 CATACATA
10622675 CATACATA
1 CATACATA
10622683 CATACATA
1 CATACATA
10622691 CATACATA
1 CATACATA
10622699 CATACATA
1 CATACATA
*
10622707 CATACGTA
1 CATACATA
*
10622715 CATACACA
1 CATACATA
*
10622723 CATACGTA
1 CATACATA
*
10622731 CATACACA
1 CATACATA
*
10622739 CATACACA
1 CATACATA
*
10622747 CATACACA
1 CATACATA
*
10622755 CATACACA
1 CATACATA
10622763 CATA
1 CATA
10622767 TTGTTTGAAT
Statistics
Matches: 2705, Mismatches: 47, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
6 4 0.00
8 2701 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (8 bp):
CATACATA
Found at i:10620022 original size:12 final size:12
Alignment explanation
Indices: 10620005--10622766 Score: 5231
Period size: 12 Copynumber: 230.3 Consensus size: 12
10619995 NNNNNNNNNN
10620005 CATACATACATA
1 CATACATACATA
10620017 CATACATACATA
1 CATACATACATA
10620029 CATACATACATA
1 CATACATACATA
10620041 CATACATACATA
1 CATACATACATA
10620053 CATACATACATA
1 CATACATACATA
10620065 CATACATACATA
1 CATACATACATA
10620077 CATACATACATA
1 CATACATACATA
10620089 CATACATACATA
1 CATACATACATA
10620101 CATACATACATA
1 CATACATACATA
10620113 CATACATACATA
1 CATACATACATA
10620125 CATACATACATA
1 CATACATACATA
10620137 CATACATACATA
1 CATACATACATA
10620149 CATACATACATA
1 CATACATACATA
10620161 CATACATACATA
1 CATACATACATA
10620173 CATACATACATA
1 CATACATACATA
10620185 CATACATACATA
1 CATACATACATA
10620197 CATACATACATA
1 CATACATACATA
10620209 CATACATACATA
1 CATACATACATA
10620221 CATACATACATA
1 CATACATACATA
10620233 CATACATACATA
1 CATACATACATA
10620245 CATACATACATA
1 CATACATACATA
10620257 CATACATACATA
1 CATACATACATA
10620269 CATACATACATA
1 CATACATACATA
10620281 CATACATACATA
1 CATACATACATA
10620293 CATACATACATA
1 CATACATACATA
10620305 CATACATACATA
1 CATACATACATA
10620317 CATACATACATA
1 CATACATACATA
10620329 CATACATACATA
1 CATACATACATA
10620341 CATACATACATA
1 CATACATACATA
10620353 CATACATACATA
1 CATACATACATA
10620365 CATACATACATA
1 CATACATACATA
10620377 CATACATACATA
1 CATACATACATA
10620389 CATACATACATA
1 CATACATACATA
10620401 CATACATACATA
1 CATACATACATA
10620413 CATACATACATA
1 CATACATACATA
10620425 CATACATACATA
1 CATACATACATA
10620437 CATACATACATA
1 CATACATACATA
10620449 CATACATACATA
1 CATACATACATA
10620461 CATACATACATA
1 CATACATACATA
10620473 CATACATACATA
1 CATACATACATA
10620485 CATACATACATA
1 CATACATACATA
10620497 CATACATACATA
1 CATACATACATA
10620509 CATACATACATA
1 CATACATACATA
10620521 CATACATACATA
1 CATACATACATA
10620533 CATACATACATA
1 CATACATACATA
10620545 CATACATACATA
1 CATACATACATA
10620557 CATACATACATA
1 CATACATACATA
10620569 CATACATACATA
1 CATACATACATA
10620581 CATACATACATA
1 CATACATACATA
10620593 CATACATACATA
1 CATACATACATA
10620605 CATACATACATA
1 CATACATACATA
10620617 CATACATACATA
1 CATACATACATA
10620629 CATACATACATA
1 CATACATACATA
10620641 CATACATACATA
1 CATACATACATA
10620653 CATACATACATA
1 CATACATACATA
10620665 CATACATACATA
1 CATACATACATA
10620677 CATACATACATA
1 CATACATACATA
10620689 CATACATACATA
1 CATACATACATA
10620701 CATACATACATA
1 CATACATACATA
10620713 CATACATACATA
1 CATACATACATA
10620725 CATACATACATA
1 CATACATACATA
10620737 CATACATACATA
1 CATACATACATA
10620749 CATACATACATA
1 CATACATACATA
10620761 CATACATACATA
1 CATACATACATA
10620773 CATACATACATA
1 CATACATACATA
10620785 CATACATACATA
1 CATACATACATA
10620797 CATACATACATA
1 CATACATACATA
10620809 CATACATACATA
1 CATACATACATA
10620821 CATACATACATA
1 CATACATACATA
10620833 CATACATACATA
1 CATACATACATA
10620845 CATACATACATA
1 CATACATACATA
10620857 CATACATACATA
1 CATACATACATA
10620869 CATACATACATA
1 CATACATACATA
10620881 CATACATACATA
1 CATACATACATA
10620893 CATACATACATA
1 CATACATACATA
10620905 CATACATACATA
1 CATACATACATA
10620917 CATACATACATA
1 CATACATACATA
10620929 CATACATACATA
1 CATACATACATA
10620941 CATACATACATA
1 CATACATACATA
10620953 CATACATACATA
1 CATACATACATA
10620965 CATACATACATA
1 CATACATACATA
10620977 CATACATACATA
1 CATACATACATA
10620989 CATACATACATA
1 CATACATACATA
10621001 CATACATACATA
1 CATACATACATA
10621013 CATACATACATA
1 CATACATACATA
10621025 CATACATACATA
1 CATACATACATA
10621037 CATACATACATA
1 CATACATACATA
10621049 CATACATACATA
1 CATACATACATA
10621061 CATACATACATA
1 CATACATACATA
10621073 CATACATACATA
1 CATACATACATA
10621085 CATACATACATA
1 CATACATACATA
10621097 CATACATACATA
1 CATACATACATA
10621109 CATACATACATA
1 CATACATACATA
10621121 CATACATACATA
1 CATACATACATA
10621133 CATACATACATA
1 CATACATACATA
10621145 CATACATACATA
1 CATACATACATA
10621157 CATACATACATA
1 CATACATACATA
10621169 CATACATACATA
1 CATACATACATA
10621181 CATACATACATA
1 CATACATACATA
10621193 CATACATACATA
1 CATACATACATA
10621205 CATACATACATA
1 CATACATACATA
10621217 CATACATACATA
1 CATACATACATA
10621229 CATACATACATA
1 CATACATACATA
10621241 CATACATACATA
1 CATACATACATA
10621253 CATACATACATA
1 CATACATACATA
10621265 CATACATACATA
1 CATACATACATA
10621277 CATACATACATA
1 CATACATACATA
10621289 CATACATACATA
1 CATACATACATA
10621301 CATACATACATA
1 CATACATACATA
10621313 CATACATACATA
1 CATACATACATA
10621325 CATACATACATA
1 CATACATACATA
10621337 CATACATACATA
1 CATACATACATA
10621349 CATACATACATA
1 CATACATACATA
10621361 CATACATACATA
1 CATACATACATA
*
10621373 CATACATACACA
1 CATACATACATA
10621385 CATACATACATA
1 CATACATACATA
*
10621397 CATACACACATA
1 CATACATACATA
10621409 CATACATACATA
1 CATACATACATA
*
10621421 CATACACACATA
1 CATACATACATA
*
10621433 CATACACACATA
1 CATACATACATA
* *
10621445 CATACACACCTA
1 CATACATACATA
*
10621457 CATACACACATA
1 CATACATACATA
*
10621469 CATACACACATA
1 CATACATACATA
*
10621481 CATACACACATA
1 CATACATACATA
*
10621493 CATACACACATA
1 CATACATACATA
*
10621505 CATACACACATA
1 CATACATACATA
* *
10621517 CATACACACACA
1 CATACATACATA
10621529 CATACATACATA
1 CATACATACATA
10621541 CATACATACATA
1 CATACATACATA
10621553 CATACATACATA
1 CATACATACATA
10621565 CATACATACATA
1 CATACATACATA
10621577 CATACATACATA
1 CATACATACATA
10621589 CATACATACATA
1 CATACATACATA
10621601 CATACATACATA
1 CATACATACATA
10621613 CATACATACATA
1 CATACATACATA
10621625 CATACATACATA
1 CATACATACATA
10621637 CATACATACATA
1 CATACATACATA
10621649 CATACATACATA
1 CATACATACATA
10621661 CATACATACATA
1 CATACATACATA
10621673 CATACATACATA
1 CATACATACATA
10621685 CATACATACATA
1 CATACATACATA
10621697 CATACATACATA
1 CATACATACATA
10621709 CATACATACATA
1 CATACATACATA
10621721 CATACATACATA
1 CATACATACATA
10621733 CATACATACATA
1 CATACATACATA
10621745 CATACATACATA
1 CATACATACATA
10621757 CATACATACATA
1 CATACATACATA
10621769 CATACATACATA
1 CATACATACATA
10621781 CATACATACATA
1 CATACATACATA
10621793 CATACATACATA
1 CATACATACATA
10621805 CATACATACATA
1 CATACATACATA
10621817 CATACATACATA
1 CATACATACATA
10621829 CATACATACATA
1 CATACATACATA
10621841 CATACATACATA
1 CATACATACATA
10621853 CATACATACATA
1 CATACATACATA
10621865 CATACATACATA
1 CATACATACATA
10621877 CATACATACATA
1 CATACATACATA
10621889 CATACATACATA
1 CATACATACATA
10621901 CATACATACATA
1 CATACATACATA
10621913 CATACATACATA
1 CATACATACATA
10621925 CATACATACATA
1 CATACATACATA
10621937 CATACATACATA
1 CATACATACATA
10621949 CATACATACATA
1 CATACATACATA
10621961 CATACATACATA
1 CATACATACATA
10621973 CATACATACATA
1 CATACATACATA
10621985 CATACATACATA
1 CATACATACATA
10621997 CATACATACATA
1 CATACATACATA
10622009 CATACATACATA
1 CATACATACATA
10622021 CATACATACATA
1 CATACATACATA
10622033 CATACATACATA
1 CATACATACATA
10622045 CATACATACATA
1 CATACATACATA
10622057 CATACATACATA
1 CATACATACATA
10622069 CATACATACATA
1 CATACATACATA
10622081 CATACATACATA
1 CATACATACATA
10622093 CATACATACATA
1 CATACATACATA
10622105 CATACATACATA
1 CATACATACATA
10622117 CATACATACATA
1 CATACATACATA
10622129 CATACATACATA
1 CATACATACATA
10622141 CATACATACATA
1 CATACATACATA
10622153 CATACATACATA
1 CATACATACATA
10622165 CATACATACATA
1 CATACATACATA
10622177 CATACATACATA
1 CATACATACATA
10622189 CATACATACATA
1 CATACATACATA
10622201 CATACATACATA
1 CATACATACATA
10622213 CATACATACATA
1 CATACATACATA
10622225 CATACATACATA
1 CATACATACATA
10622237 CATACATACATA
1 CATACATACATA
10622249 CATACATACATA
1 CATACATACATA
10622261 CATACATACATA
1 CATACATACATA
10622273 CATACATACATA
1 CATACATACATA
10622285 CATACATACATA
1 CATACATACATA
10622297 CATACATACATA
1 CATACATACATA
10622309 CATACATACATA
1 CATACATACATA
10622321 CATACATACATA
1 CATACATACATA
10622333 CATACATACATA
1 CATACATACATA
10622345 CATACATACATA
1 CATACATACATA
10622357 CATACATACATA
1 CATACATACATA
10622369 CATACATACATA
1 CATACATACATA
10622381 CATACATACATA
1 CATACATACATA
10622393 CATACATACATA
1 CATACATACATA
10622405 CATACATACATA
1 CATACATACATA
10622417 CATACATACATA
1 CATACATACATA
10622429 CATACATACATA
1 CATACATACATA
10622441 CATACATACATA
1 CATACATACATA
10622453 CATACATACATA
1 CATACATACATA
10622465 CATACATACATA
1 CATACATACATA
10622477 CATACATACATA
1 CATACATACATA
10622489 CATACATACATA
1 CATACATACATA
10622501 CATACATACATA
1 CATACATACATA
10622513 CATACATACATA
1 CATACATACATA
10622525 CATACATACATA
1 CATACATACATA
10622537 CATACATACATA
1 CATACATACATA
10622549 CATACATACATA
1 CATACATACATA
* *
10622561 TATACATACACA
1 CATACATACATA
10622573 CATACATACATA
1 CATACATACATA
10622585 CATACATACATA
1 CATACATACATA
*
10622597 CATACCTACATA
1 CATACATACATA
*
10622609 CATAGATACATA
1 CATACATACATA
* *
10622621 GATACATATATA
1 CATACATACATA
10622633 CATACATACATA
1 CATACATACATA
*
10622645 CATACATACGTA
1 CATACATACATA
* *
10622657 C--ACACACACA
1 CATACATACATA
* *
10622667 CACACACACATA
1 CATACATACATA
10622679 CATACATACATA
1 CATACATACATA
10622691 CATACATACATA
1 CATACATACATA
*
10622703 CATACATACGTA
1 CATACATACATA
*
10622715 CATACACACATA
1 CATACATACATA
* *
10622727 CGTACATACACA
1 CATACATACATA
*
10622739 CATACACACATA
1 CATACATACATA
* *
10622751 CACACATACACA
1 CATACATACATA
10622763 CATA
1 CATA
10622767 TTGTTTGAAT
Statistics
Matches: 2706, Mismatches: 42, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
10 7 0.00
12 2699 1.00
ACGTcount: A:0.50, C:0.26, G:0.00, T:0.24
Consensus pattern (12 bp):
CATACATACATA
Found at i:10634073 original size:84 final size:84
Alignment explanation
Indices: 10633985--10634166 Score: 195
Period size: 84 Copynumber: 2.2 Consensus size: 84
10633975 ATAACGACAA
* *
10633985 CCTTCATCAGAGATTGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGCTTCC-TTCATC
1 CCTTCATCAGAGATTGCCACAAAGGCATCCTTCAACAGAGATCGCCACAAAGGCTTCCATT-ATC
* * *
10634049 AGAGATCACCATAATGGCTT
65 AAAGATCACCACAAAGGCTT
** * * * * * *
10634069 CCTTCATTGGGGATTGCCACAAAGGCTTTCTTCAACAGAGATTGCCATAATGGCTTCCATTATCA
1 CCTTCATCAGAGATTGCCACAAAGGCATCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
*
10634134 AAGGTCACCACAAAGGCTT
66 AAGATCACCACAAAGGCTT
** *
10634153 TTTTCATCAAAGAT
1 CCTTCATCAGAGAT
10634167 CACAAAAAAG
Statistics
Matches: 77, Mismatches: 20, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
84 75 0.97
85 2 0.03
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (84 bp):
CCTTCATCAGAGATTGCCACAAAGGCATCCTTCAACAGAGATCGCCACAAAGGCTTCCATTATCA
AAGATCACCACAAAGGCTT
Found at i:10634117 original size:56 final size:56
Alignment explanation
Indices: 10633985--10634166 Score: 197
Period size: 56 Copynumber: 3.2 Consensus size: 56
10633975 ATAACGACAA
* * *
10633985 CCTTCATCAGAGATTGCCACAAAGGCATCCTTCATCAGGGATCGCCACAAAGGCTT
1 CCTTCATCAGAGATTGCCATAATGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
** ** *
10634041 CCTTCATCAGAGATCACCATAATGGCTTCCTTCATTGGGGATTGCCACAAAGGCTT
1 CCTTCATCAGAGATTGCCATAATGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
* * * *
10634097 TCTTCAACAGAGATTGCCATAATGGCTTCCATT-ATCAAAGG-TCACCACAAAGGCTT
1 CCTTCATCAGAGATTGCCATAATGGCTTCC-TTCATC-AGGGATCGCCACAAAGGCTT
** *
10634153 TTTTCATCAAAGAT
1 CCTTCATCAGAGAT
10634167 CACAAAAAAG
Statistics
Matches: 104, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
56 100 0.96
57 4 0.04
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.27
Consensus pattern (56 bp):
CCTTCATCAGAGATTGCCATAATGGCTTCCTTCATCAGGGATCGCCACAAAGGCTT
Found at i:10634123 original size:28 final size:28
Alignment explanation
Indices: 10633952--10634184 Score: 162
Period size: 28 Copynumber: 8.3 Consensus size: 28
10633942 TTTCCACTAT
* * * *
10633952 GGCTTCCTTCATTAGAGCTTGCCATAAC
1 GGCTTCCTTCATCAGAGATTGCCACAAA
* **
10633980 GACAACCTTCATCAGAGATTGCCACAAA
1 GGCTTCCTTCATCAGAGATTGCCACAAA
* * *
10634008 GGCATCCTTCATCAGGGATCGCCACAAA
1 GGCTTCCTTCATCAGAGATTGCCACAAA
** * *
10634036 GGCTTCCTTCATCAGAGATCACCATAAT
1 GGCTTCCTTCATCAGAGATTGCCACAAA
** *
10634064 GGCTTCCTTCATTGGGGATTGCCACAAA
1 GGCTTCCTTCATCAGAGATTGCCACAAA
* * * *
10634092 GGCTTTCTTCAACAGAGATTGCCATAAT
1 GGCTTCCTTCATCAGAGATTGCCACAAA
* * **
10634120 GGCTTCCATT-ATCAAAGGTCACCACAAA
1 GGCTTCC-TTCATCAGAGATTGCCACAAA
** * ** * *
10634148 GGCTTTTTTCATCAAAGATCACAAAAAA
1 GGCTTCCTTCATCAGAGATTGCCACAAA
10634176 GGCTTCCTT
1 GGCTTCCTT
10634185 TTCTTGGCGT
Statistics
Matches: 158, Mismatches: 45, Indels: 4
0.76 0.22 0.02
Matches are distributed among these distances:
27 2 0.01
28 154 0.97
29 2 0.01
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.27
Consensus pattern (28 bp):
GGCTTCCTTCATCAGAGATTGCCACAAA
Found at i:10638673 original size:20 final size:20
Alignment explanation
Indices: 10638638--10638686 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
10638628 ATCACAGTCT
*
10638638 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
10638657 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
10638677 TTGCTTACTT
1 TTGCTTACTT
10638687 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Done.