Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 47 of 163
Found at i:15165392 original size:42 final size:42
Alignment explanation
Indices: 15165343--15165473 Score: 208
Period size: 42 Copynumber: 3.1 Consensus size: 42
15165333 GCCACATTAC
* * * *
15165343 AGGAGCAATTGCAACAGTATGAGGCAAAGATGAAAAAAATGG
1 AGGAGCAATTACAACAGTCTGAAGCAAAGATGAAAAAAACGG
*
15165385 ATGAGCAATTACAACAGTCTGAAGCAAAGATGAAAAAAACGG
1 AGGAGCAATTACAACAGTCTGAAGCAAAGATGAAAAAAACGG
*
15165427 AGGAGCAATTACAGCAGTCTGAAGCAAAGATGAAAAAAACGG
1 AGGAGCAATTACAACAGTCTGAAGCAAAGATGAAAAAAACGG
15165469 AGGAG
1 AGGAG
15165474 ATGTTGCGAA
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 82 1.00
ACGTcount: A:0.48, C:0.12, G:0.27, T:0.13
Consensus pattern (42 bp):
AGGAGCAATTACAACAGTCTGAAGCAAAGATGAAAAAAACGG
Found at i:15177706 original size:12 final size:12
Alignment explanation
Indices: 15177689--15177714 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
15177679 ATTCGCATAA
15177689 AATTTACGAACT
1 AATTTACGAACT
15177701 AATTTACGAACT
1 AATTTACGAACT
15177713 AA
1 AA
15177715 CTCCTCATCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.15, G:0.08, T:0.31
Consensus pattern (12 bp):
AATTTACGAACT
Found at i:15178060 original size:25 final size:24
Alignment explanation
Indices: 15178006--15178064 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 24
15177996 TTAATTAGTA
* *
15178006 TAAAATATT-AATAATTCAATAAGT
1 TAAAAT-TTAAATAATTAAATAAAT
15178030 TGAAAATTTAAATAATTAAATAAAAT
1 T-AAAATTTAAATAATTAAAT-AAAT
15178056 TAAAATTTA
1 TAAAATTTA
15178065 GGAGAAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 3 0.10
25 23 0.77
26 4 0.13
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.37
Consensus pattern (24 bp):
TAAAATTTAAATAATTAAATAAAT
Found at i:15181699 original size:31 final size:31
Alignment explanation
Indices: 15181641--15181700 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
15181631 GTCTTTTGAA
*
15181641 AATATGTACAAAAAGAGACATCTAATTTTTT
1 AATATGTACAAAAAGAGACATCAAATTTTTT
*
15181672 AATATTTACAAAAAGAGTA-ATCAAATTTT
1 AATATGTACAAAAAGAG-ACATCAAATTTT
15181701 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 25 0.96
32 1 0.04
ACGTcount: A:0.48, C:0.08, G:0.08, T:0.35
Consensus pattern (31 bp):
AATATGTACAAAAAGAGACATCAAATTTTTT
Found at i:15181877 original size:59 final size:62
Alignment explanation
Indices: 15181814--15181980 Score: 170
Period size: 68 Copynumber: 2.6 Consensus size: 62
15181804 CCTTGACTAG
15181814 TGTTACAA-AA-TAATAA-TAATA-AA-ACATCAAGTTTG-TTTTACTAATCAAATGTTAGATTT
1 TGTTACAACAATTAATAATTAATACAATA-AT-AA-TTTGATTTTACTAATCAAATGTTAGATTT
15181873 TGTTACAACAATTAATACAATTAATACAATTAATAATTTGATAATTTTACTAATCAAATGTTAGA
1 TGTTACAACAATTAAT--AATTAATACAA-TAATAATTTG---ATTTTACTAATCAAATGTTAGA
15181938 TTT
60 TTT
15181941 TGTTACAACAATTAATACAATT-A-ACAATTAATAATTTGAT
1 TGTTACAACAATTAAT--AATTAATACAA-TAATAATTTGAT
15181981 AATTTTACTA
Statistics
Matches: 96, Mismatches: 0, Indels: 20
0.83 0.00 0.17
Matches are distributed among these distances:
59 8 0.08
60 2 0.02
61 4 0.04
63 4 0.04
64 9 0.09
65 4 0.04
66 17 0.18
67 2 0.02
68 46 0.48
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.40
Consensus pattern (62 bp):
TGTTACAACAATTAATAATTAATACAATAATAATTTGATTTTACTAATCAAATGTTAGATTT
Found at i:15181894 original size:9 final size:9
Alignment explanation
Indices: 15181880--15181907 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
15181870 TTTTGTTACA
15181880 ACAATTAAT
1 ACAATTAAT
15181889 ACAATTAAT
1 ACAATTAAT
15181898 ACAATTAAT
1 ACAATTAAT
15181907 A
1 A
15181908 ATTTGATAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (9 bp):
ACAATTAAT
Found at i:15181929 original size:68 final size:66
Alignment explanation
Indices: 15181849--15181991 Score: 268
Period size: 68 Copynumber: 2.1 Consensus size: 66
15181839 ATCAAGTTTG
15181849 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAATACAATTAATAATTTGA
1 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATT-A-ACAATTAATAATTTGA
15181914 TAA
64 TAA
15181917 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAACAATTAATAATTTGATA
1 TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAACAATTAATAATTTGATA
15181982 A
66 A
15181983 TTTTACTAA
1 TTTTACTAA
15181992 CAATTAATTT
Statistics
Matches: 75, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
66 28 0.37
67 1 0.01
68 46 0.61
ACGTcount: A:0.43, C:0.09, G:0.06, T:0.42
Consensus pattern (66 bp):
TTTTACTAATCAAATGTTAGATTTTGTTACAACAATTAATACAATTAACAATTAATAATTTGATA
A
Found at i:15182001 original size:16 final size:16
Alignment explanation
Indices: 15181980--15182021 Score: 66
Period size: 16 Copynumber: 2.6 Consensus size: 16
15181970 AATAATTTGA
*
15181980 TAATTTTACTAACAAT
1 TAATTTTAATAACAAT
15181996 TAATTTTAATAACAAT
1 TAATTTTAATAACAAT
*
15182012 TAGTTTTAAT
1 TAATTTTAAT
15182022 TTTATTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.02, T:0.48
Consensus pattern (16 bp):
TAATTTTAATAACAAT
Found at i:15182005 original size:22 final size:22
Alignment explanation
Indices: 15181995--15182044 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
15181985 TTACTAACAA
* * *
15181995 TTAATTTTAATAACAATTAGTT
1 TTAATTTTAATAAAAAATAATT
*
15182017 TTAATTTTATTAAAAAATAATT
1 TTAATTTTAATAAAAAATAATT
15182039 TTAATT
1 TTAATT
15182045 AAAAACGGGC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (22 bp):
TTAATTTTAATAAAAAATAATT
Found at i:15182037 original size:16 final size:17
Alignment explanation
Indices: 15182018--15182049 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15182008 CAATTAGTTT
15182018 TAATTTT-ATTAAAAAA
1 TAATTTTAATTAAAAAA
15182034 TAATTTTAATTAAAAA
1 TAATTTTAATTAAAAA
15182050 CGGGCCGGGC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 7 0.47
17 8 0.53
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TAATTTTAATTAAAAAA
Found at i:15182240 original size:57 final size:57
Alignment explanation
Indices: 15182176--15182287 Score: 224
Period size: 57 Copynumber: 2.0 Consensus size: 57
15182166 TTGTGGGCCT
15182176 GGCCCGGCCCATGGACAAGTCTAACCTAGACTTAAGGAAAATTTGAAATTGAGTTCC
1 GGCCCGGCCCATGGACAAGTCTAACCTAGACTTAAGGAAAATTTGAAATTGAGTTCC
15182233 GGCCCGGCCCATGGACAAGTCTAACCTAGACTTAAGGAAAATTTGAAATTGAGTT
1 GGCCCGGCCCATGGACAAGTCTAACCTAGACTTAAGGAAAATTTGAAATTGAGTT
15182288 GCAATTTAAA
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.23
Consensus pattern (57 bp):
GGCCCGGCCCATGGACAAGTCTAACCTAGACTTAAGGAAAATTTGAAATTGAGTTCC
Found at i:15193027 original size:185 final size:184
Alignment explanation
Indices: 15192726--15193079 Score: 523
Period size: 185 Copynumber: 1.9 Consensus size: 184
15192716 ACCGACATAG
* * *
15192726 GTGACTTTTCGACTTACTGCTCCCTTTCAAATGATCCTCTCCTTCCCCTTTTCCTTTTGATCAGA
1 GTGACTTTCCGACTTACTGCTCCCTTCCAAATGATCCTCTCCTTCCCCTCTTCCTTTTGATCAGA
* * * * *
15192791 CTAGATTTCCAAGGAGCTCCTCCAAACCCATCGAATTCCTAACCTGAAACCTGGGATTCAACATT
66 CTAGATTTCCAAGGACCTCCTCCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAACATC
15192856 TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
131 TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
* * * *
15192910 GTGACTTTCCGGCTTACTGCTGCCTTCCAAAATGATCCTTTTCTTCCCCTCTT-CTCTTTGATCA
1 GTGACTTTCCGACTTACTGCTCCCTTCC-AAATGATCCTCTCCTTCCCCTCTTCCT-TTTGATCA
* *
15192974 GACTAGATTTTCAAGGACCT-CTACCAAACCCATCGAATTTCTAACCCGAAACCTAGGACTCAAC
64 GACTAGATTTCCAAGGACCTCCT-CCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAAC
* *
15193038 ATCTTCTTCCACCATAAGGGGTTTGTCAAAGAAGGCATCTTT
128 ATCTTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTT
15193080 CCAACAAAGT
Statistics
Matches: 151, Mismatches: 16, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
184 28 0.19
185 123 0.81
ACGTcount: A:0.24, C:0.30, G:0.14, T:0.32
Consensus pattern (184 bp):
GTGACTTTCCGACTTACTGCTCCCTTCCAAATGATCCTCTCCTTCCCCTCTTCCTTTTGATCAGA
CTAGATTTCCAAGGACCTCCTCCAAACCCATCGAATTCCTAACCCGAAACCTAGGACTCAACATC
TTCTTCCACCATAAGGGGTTTGCCAAAGAAGACATCTTTGTTCTATCGACGCCA
Found at i:15194086 original size:25 final size:26
Alignment explanation
Indices: 15194034--15194090 Score: 82
Period size: 26 Copynumber: 2.2 Consensus size: 26
15194024 AGTGGATGAA
15194034 AAAAAAAGTTTAAGTACTAATTTGGG
1 AAAAAAAGTTTAAGTACTAATTTGGG
*
15194060 AAAAAAA-TTATATGTACTAATTT-GG
1 AAAAAAAGTT-TAAGTACTAATTTGGG
15194085 AAAAAA
1 AAAAAA
15194091 TAGACAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
25 10 0.34
26 19 0.66
ACGTcount: A:0.53, C:0.04, G:0.14, T:0.30
Consensus pattern (26 bp):
AAAAAAAGTTTAAGTACTAATTTGGG
Found at i:15195569 original size:125 final size:123
Alignment explanation
Indices: 15195206--15195631 Score: 647
Period size: 123 Copynumber: 3.4 Consensus size: 123
15195196 TTAGGGTTTT
15195206 TAGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTTTATC
1 TAGGTCCT-GAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTTTATC
15195271 AGGATGCTTTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
64 AGGATGCTTTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
* ** ** *
15195331 TAGGTCCTGAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAAAATGCTTCAAGCA
1 TAGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCT-CTTTTATCA
* ** * * ** *
15195396 AGATGCTATT-TGAGAAGAATTTCTGAAATCGCGTCCTTGTGGACGCGCTTTTGCTACAG
65 GGATGCT-TTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
*
15195455 TTGGTCCTGGAAGAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTTTATC
1 TAGGTCCT-GAA-AAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTTTATC
15195520 AGGATGCTTTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
64 AGGATGCTTTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
*
15195580 TAGGTCCTGAAAAATTATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA
1 TAGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAA
15195632 NNNNNNNNNN
Statistics
Matches: 265, Mismatches: 31, Indels: 12
0.86 0.10 0.04
Matches are distributed among these distances:
123 81 0.31
124 69 0.26
125 74 0.28
126 41 0.15
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (123 bp):
TAGGTCCTGAAAAATAATTTCGAGTTGACGTTTCTGAGCAAATAGTATAAAATCTCTTTTATCAG
GATGCTTTATGAGAAGAATTAGTTAAATCGCGCCCACGTGGACGCGCTTTTGCTATAG
Found at i:15198387 original size:23 final size:23
Alignment explanation
Indices: 15198358--15198621 Score: 510
Period size: 23 Copynumber: 11.5 Consensus size: 23
15198348 NNNNNNNNNN
15198358 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198381 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198404 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198427 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198450 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198473 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198496 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198519 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198542 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
15198565 TTTTAATTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
*
15198588 TTTTAAGTTAATTAGGTTAGGGT
1 TTTTAATTTAATTAGGTTAGGGT
*
15198611 TTTTAAGTTAA
1 TTTTAATTTAA
15198622 GGGTATTAAT
Statistics
Matches: 240, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 240 1.00
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.52
Consensus pattern (23 bp):
TTTTAATTTAATTAGGTTAGGGT
Found at i:15198771 original size:70 final size:70
Alignment explanation
Indices: 15198697--15198922 Score: 375
Period size: 70 Copynumber: 3.2 Consensus size: 70
15198687 TAATCTCATG
*
15198697 TTATTACATCAAATAATATTAAAATAACTCAAAAAAATTTATATTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATTAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
15198762 CTATT
66 CTATT
*
15198767 TTATTACATCAAATAATATCAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
1 TTATTACATCAAATAATATTAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
*
15198832 TTATT
66 CTATT
* *
15198837 TTATTACATCAAATAAT-TTCAAAAAAACTC-AAAAGATTTCTATTTTTATTACATCAAATAAAC
1 TTATTACATCAAATAATATT-AAAATAACTCAAAAAAATTTCTA-TTTTATTACATCAAATAAAC
15198900 TTCTATT
64 TTCTATT
15198907 TTATTACATCAAATAA
1 TTATTACATCAAATAA
15198923 NNNNNNNNNN
Statistics
Matches: 147, Mismatches: 7, Indels: 4
0.93 0.04 0.03
Matches are distributed among these distances:
69 12 0.08
70 135 0.92
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (70 bp):
TTATTACATCAAATAATATTAAAATAACTCAAAAAAATTTCTATTTTATTACATCAAATAAACTT
CTATT
Found at i:15198850 original size:25 final size:24
Alignment explanation
Indices: 15198725--15198922 Score: 135
Period size: 25 Copynumber: 8.3 Consensus size: 24
15198715 TTAAAATAAC
*
15198725 TCAAAAAAATTTATATTTTATTACA
1 TCAAATAAATTT-TATTTTATTACA
*
15198750 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAA-TTTTATTTTATTACA
* * ** *
15198775 TCAAAT-AATATCA--AAATAAC-
1 TCAAATAAATTTTATTTTATTACA
*
15198795 TCAAAAAAATTTCTATTTTATTACA
1 TCAAATAAATTT-TATTTTATTACA
15198820 TCAAATAAACTTTTATTTTATTACA
1 TCAAATAAA-TTTTATTTTATTACA
* ** **
15198845 TCAAAT-AATTTCA--AAAAAAC-
1 TCAAATAAATTTTATTTTATTACA
*
15198865 TCAAA-AGATTTCTATTTTTATTACA
1 TCAAATAAATTT-TA-TTTTATTACA
*
15198890 TCAAATAAACTTCTATTTTATTACA
1 TCAAATAAA-TTTTATTTTATTACA
15198915 TCAAATAA
1 TCAAATAA
15198923 NNNNNNNNNN
Statistics
Matches: 130, Mismatches: 28, Indels: 30
0.69 0.15 0.16
Matches are distributed among these distances:
20 14 0.11
21 12 0.09
22 1 0.01
23 6 0.05
24 11 0.08
25 75 0.58
26 9 0.07
27 2 0.02
ACGTcount: A:0.46, C:0.13, G:0.01, T:0.40
Consensus pattern (24 bp):
TCAAATAAATTTTATTTTATTACA
Found at i:15199455 original size:18 final size:18
Alignment explanation
Indices: 15199432--15199471 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
15199422 GACTCTAAAA
*
15199432 AGGATACATATAAGGGTT
1 AGGATACATATAAGGGCT
15199450 AGGATACATATAAGGGCT
1 AGGATACATATAAGGGCT
15199468 AGGA
1 AGGA
15199472 AACGCACCTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.40, C:0.07, G:0.30, T:0.23
Consensus pattern (18 bp):
AGGATACATATAAGGGCT
Found at i:15201164 original size:14 final size:15
Alignment explanation
Indices: 15201143--15201172 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
15201133 TTTTATGGTT
*
15201143 CAAAAAATTTTAAAA
1 CAAAAATTTTTAAAA
15201158 CAAAAATTTTTAAAA
1 CAAAAATTTTTAAAA
15201173 TTATTTAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (15 bp):
CAAAAATTTTTAAAA
Found at i:15201254 original size:11 final size:11
Alignment explanation
Indices: 15201240--15201316 Score: 63
Period size: 11 Copynumber: 6.9 Consensus size: 11
15201230 TTAAATATGG
15201240 ATTTGAGAGAA
1 ATTTGAGAGAA
*
15201251 ATTTGTA-AGGA
1 ATTTG-AGAGAA
15201262 ATTTGAGAGCAA
1 ATTTGAGAG-AA
*
15201274 A-TTGAAAAGAA
1 ATTTG-AGAGAA
15201285 ATTT-AGAGGAA
1 ATTTGAGA-GAA
15201296 A-TTGAGAGGAA
1 ATTTGAGA-GAA
15201307 ATTTGAGAGA
1 ATTTGAGAGA
15201317 GGATTAGTTT
Statistics
Matches: 54, Mismatches: 4, Indels: 16
0.73 0.05 0.22
Matches are distributed among these distances:
10 5 0.09
11 35 0.65
12 14 0.26
ACGTcount: A:0.45, C:0.01, G:0.27, T:0.26
Consensus pattern (11 bp):
ATTTGAGAGAA
Found at i:15201297 original size:22 final size:23
Alignment explanation
Indices: 15201240--15201315 Score: 77
Period size: 22 Copynumber: 3.4 Consensus size: 23
15201230 TTAAATATGG
* *
15201240 ATTTGAGAG-AAATTTG-TAAGGA
1 ATTTGAGAGCAAA-TTGAAAAGAA
15201262 ATTTGAGAGCAAATTGAAAAGAA
1 ATTTGAGAGCAAATTGAAAAGAA
* * *
15201285 ATTT-AGAGGAAATTGAGAGGAA
1 ATTTGAGAGCAAATTGAAAAGAA
15201307 ATTTGAGAG
1 ATTTGAGAG
15201316 AGGATTAGTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
22 31 0.67
23 15 0.33
ACGTcount: A:0.45, C:0.01, G:0.28, T:0.26
Consensus pattern (23 bp):
ATTTGAGAGCAAATTGAAAAGAA
Found at i:15206002 original size:3 final size:3
Alignment explanation
Indices: 15205994--15206018 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15205984 TCATACACAA
15205994 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
15206019 GACCTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15215297 original size:111 final size:112
Alignment explanation
Indices: 15215103--15215326 Score: 425
Period size: 111 Copynumber: 2.0 Consensus size: 112
15215093 TTATTAGATA
15215103 TTAAATTAAAATAATATAATAATTTATTACAAAACAGAACTAAAATAGGTTGGATGATCTATTAA
1 TTAAATTAAAATAATATAATAATTTATTACAAAACAGAACTAAAATAGGTTGGATGATCTATTAA
15215168 CAAACATGGACACACTTGAGTAAAATTTTAGGTCTA-ATTTTGGACT
66 CAAACATGGACACACTTGAGTAAAATTTTAGGTCTATATTTTGGACT
15215214 TTAAATTAAAATAATATAA-ATATTTATTACAAAACAGAACTAAAATAGGTTGGATGATCTATTA
1 TTAAATTAAAATAATATAATA-ATTTATTACAAAACAGAACTAAAATAGGTTGGATGATCTATTA
15215278 ACAAACATGGACACACTTGAGTAAAATTTTAGGTCTATATTTTGGACT
65 ACAAACATGGACACACTTGAGTAAAATTTTAGGTCTATATTTTGGACT
15215326 T
1 T
15215327 AACTAGACTT
Statistics
Matches: 111, Mismatches: 0, Indels: 3
0.97 0.00 0.03
Matches are distributed among these distances:
110 1 0.01
111 99 0.89
112 11 0.10
ACGTcount: A:0.44, C:0.10, G:0.12, T:0.34
Consensus pattern (112 bp):
TTAAATTAAAATAATATAATAATTTATTACAAAACAGAACTAAAATAGGTTGGATGATCTATTAA
CAAACATGGACACACTTGAGTAAAATTTTAGGTCTATATTTTGGACT
Found at i:15216006 original size:3 final size:3
Alignment explanation
Indices: 15215998--15216022 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
15215988 TCATACACAA
15215998 AAG AAG AAG AAG AAG AAG AAG AAG A
1 AAG AAG AAG AAG AAG AAG AAG AAG A
15216023 GACCTATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.32, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:15220188 original size:3 final size:3
Alignment explanation
Indices: 15220180--15220219 Score: 55
Period size: 3 Copynumber: 13.7 Consensus size: 3
15220170 ATATAAATAC
* *
15220180 AAT AAT AAT AAT -AT AAT AAT TAT AAT AAT AAA AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15220220 ACAATATAAA
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
2 2 0.06
3 30 0.94
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:15222723 original size:43 final size:43
Alignment explanation
Indices: 15222634--15222730 Score: 124
Period size: 43 Copynumber: 2.3 Consensus size: 43
15222624 CTGCAGGGGT
* * *
15222634 CACACGCCCGTGTGGCCAGACTGTGTGCCTCACACGGCCGAGA
1 CACACGCCCATGTGGCCAGACTGTGTGCCTCACACGGCCAAAA
* * *
15222677 CACACACCCATGTGGCCAG-GTCGTGTGCCTCACACGGCTAAAA
1 CACACGCCCATGTGGCCAGACT-GTGTGCCTCACACGGCCAAAA
15222720 CACACGCCCAT
1 CACACGCCCAT
15222731 CTCTTAGGCC
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
42 1 0.02
43 45 0.98
ACGTcount: A:0.23, C:0.38, G:0.25, T:0.14
Consensus pattern (43 bp):
CACACGCCCATGTGGCCAGACTGTGTGCCTCACACGGCCAAAA
Found at i:15223764 original size:43 final size:43
Alignment explanation
Indices: 15223714--15223796 Score: 130
Period size: 43 Copynumber: 1.9 Consensus size: 43
15223704 TCATATTTCA
**
15223714 TTTCTCATCTCATAATCATTGCTCATCTTTGTCATTTCAACAT
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAACAT
* *
15223757 TTTCTCATCTCATATTCATTTCTCATCTTTACCATTTCAA
1 TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAA
15223797 TATCAATCAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 36 1.00
ACGTcount: A:0.23, C:0.27, G:0.02, T:0.48
Consensus pattern (43 bp):
TTTCTCATCTCATAATCATTGCTCATCTTTACCATTTCAACAT
Found at i:15225877 original size:26 final size:26
Alignment explanation
Indices: 15225841--15225893 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15225831 TGTCACCAAC
15225841 AGCAAACTCAATATCTCTACATTTCA
1 AGCAAACTCAATATCTCTACATTTCA
*
15225867 AGCAAACTCAATATTTCTACATTTCA
1 AGCAAACTCAATATCTCTACATTTCA
15225893 A
1 A
15225894 ATCTGCGTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.25, G:0.04, T:0.32
Consensus pattern (26 bp):
AGCAAACTCAATATCTCTACATTTCA
Found at i:15235398 original size:21 final size:21
Alignment explanation
Indices: 15235373--15235414 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
15235363 TTTGCCTAGT
15235373 ATGTGAATTGTAATT-AATTGA
1 ATGTGAATTGT-ATTAAATTGA
15235394 ATGTGAATTGTATTAAATTGA
1 ATGTGAATTGTATTAAATTGA
15235415 GCTAAATTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
20 3 0.15
21 17 0.85
ACGTcount: A:0.38, C:0.00, G:0.19, T:0.43
Consensus pattern (21 bp):
ATGTGAATTGTATTAAATTGA
Found at i:15235880 original size:26 final size:26
Alignment explanation
Indices: 15235851--15235927 Score: 88
Period size: 26 Copynumber: 3.0 Consensus size: 26
15235841 CCTGTTATAT
*
15235851 GGCTCTTCGTGAGTTTCCCGATTAAA
1 GGCTCTTCGTGAGCTTCCCGATTAAA
* * *
15235877 GGCTCTTTGTGAGCTTCCTGATTAAT
1 GGCTCTTCGTGAGCTTCCCGATTAAA
15235903 GGCTC-TC-TGGAGCTTCCCGA-TAAA
1 GGCTCTTCGT-GAGCTTCCCGATTAAA
15235927 G
1 G
15235928 CTCGCTTAAA
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
24 5 0.12
25 11 0.26
26 27 0.63
ACGTcount: A:0.18, C:0.23, G:0.25, T:0.34
Consensus pattern (26 bp):
GGCTCTTCGTGAGCTTCCCGATTAAA
Found at i:15239269 original size:16 final size:16
Alignment explanation
Indices: 15239248--15239278 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15239238 AGATAACAAC
*
15239248 ATTGTCTAAGTGCATA
1 ATTGTCCAAGTGCATA
15239264 ATTGTCCAAGTGCAT
1 ATTGTCCAAGTGCAT
15239279 TACTCGTATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.19, T:0.35
Consensus pattern (16 bp):
ATTGTCCAAGTGCATA
Found at i:15243522 original size:18 final size:17
Alignment explanation
Indices: 15243471--15243513 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
15243461 TTATCCATGT
* *
15243471 TTTGGAGAGTGTTTTCC
1 TTTGGAGAATATTTTCC
15243488 TTTGGAGAATATTTTCC
1 TTTGGAGAATATTTTCC
15243505 TTTGG-GAAT
1 TTTGGAGAAT
15243514 TCATTTTCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
16 4 0.17
17 20 0.83
ACGTcount: A:0.19, C:0.09, G:0.26, T:0.47
Consensus pattern (17 bp):
TTTGGAGAATATTTTCC
Found at i:15245307 original size:22 final size:21
Alignment explanation
Indices: 15245265--15245310 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 21
15245255 GGGATCAACA
15245265 CAAATATAATCACATGCATAT
1 CAAATATAATCACATGCATAT
*
15245286 CAAATTATCAATCTCAT-CATAT
1 CAAA-TAT-AATCACATGCATAT
15245308 CAA
1 CAA
15245311 TCATCATAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 4 0.18
22 11 0.50
23 7 0.32
ACGTcount: A:0.46, C:0.22, G:0.02, T:0.30
Consensus pattern (21 bp):
CAAATATAATCACATGCATAT
Found at i:15245516 original size:22 final size:22
Alignment explanation
Indices: 15245491--15245550 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 22
15245481 TGGTTTGCAA
*
15245491 ATAAATTTCCACTGATTT-TCAG
1 ATAAATTACCACTGATTTGT-AG
*
15245513 ATAAACTACCACTGATTTGTAG
1 ATAAATTACCACTGATTTGTAG
*
15245535 ATAAATTGCCACTGAT
1 ATAAATTACCACTGAT
15245551 AACACTGATG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
22 32 0.97
23 1 0.03
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (22 bp):
ATAAATTACCACTGATTTGTAG
Found at i:15246123 original size:17 final size:17
Alignment explanation
Indices: 15246101--15246133 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15246091 CGGTTTCACT
*
15246101 CGATCTATCTCATAAGA
1 CGATCTATCACATAAGA
15246118 CGATCTATCACATAAG
1 CGATCTATCACATAAG
15246134 TAACATGTAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.24, G:0.12, T:0.27
Consensus pattern (17 bp):
CGATCTATCACATAAGA
Found at i:15256282 original size:14 final size:14
Alignment explanation
Indices: 15256250--15256284 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
15256240 TGGAGGATGG
*
15256250 AAAGAAAGAGTGGA
1 AAAGTAAGAGTGGA
15256264 AAAGTAAGAGTGGA
1 AAAGTAAGAGTGGA
15256278 AAAGTAA
1 AAAGTAA
15256285 AAAAAAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.57, C:0.00, G:0.31, T:0.11
Consensus pattern (14 bp):
AAAGTAAGAGTGGA
Found at i:15256983 original size:98 final size:97
Alignment explanation
Indices: 15256720--15257008 Score: 348
Period size: 96 Copynumber: 3.0 Consensus size: 97
15256710 TAAAATTTTC
* * * * * *
15256720 AAAATTGGATTAGGTTTTA-TGTTTATTGTTTTTTAAGAAAAAATCAATTAAATTAAGGTTTAAG
1 AAAATTAGATTAGGGTTTAGTGTTTA-GGGTTTTTAAGAAAAAATCAAATAAATTAAGGTTTAGG
* * * *
15256784 GTTAGTTGAGTAATTTAATTA-AATTTTTAAAA
65 GTTACTTGAGTAAATTAATTATAAATTTAAAAA
* * * *
15256816 AAAATTAGATTAGGGTTTAGAGTTAAGGGTTTTTATGAAAAAATCAAATAAATTAAGGTTCAGGG
1 AAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAATCAAATAAATTAAGGTTTAGGG
15256881 TTACTTGAGTAAATTAATTATAAATTTAAAAA
66 TTACTTGAGTAAATTAATTATAAATTTAAAAA
* * *
15256913 AAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGTAAAAACTTAAATAAATTAGGGTTTAGG
1 AAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAG-AAAAAATCAAATAAATTAAGGTTTAGG
* * * * *
15256978 GTTACTTAATTAAATTATTTGTTAATTTAAA
65 GTTACTTGAGTAAATTAATTATAAATTTAAA
15257009 GAAGCTCCCA
Statistics
Matches: 164, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
96 68 0.41
97 47 0.29
98 49 0.30
ACGTcount: A:0.40, C:0.02, G:0.17, T:0.41
Consensus pattern (97 bp):
AAAATTAGATTAGGGTTTAGTGTTTAGGGTTTTTAAGAAAAAATCAAATAAATTAAGGTTTAGGG
TTACTTGAGTAAATTAATTATAAATTTAAAAA
Found at i:15257235 original size:126 final size:123
Alignment explanation
Indices: 15257006--15257345 Score: 453
Period size: 126 Copynumber: 2.8 Consensus size: 123
15256996 TTGTTAATTT
* * ** *
15257006 AAAGAAGCTCCCACGTGGATGCGCTTTTGCTACAGTAGCTCCCAAAAAATAATTTCGAGTAGACG
1 AAAGAAGCTTCCA-GTGGACGCGCTTTTGCTACAGTAGCTCTGAAAAAATAATTTCGAGTTGACG
* * *
15257071 TTTCTAAGCAAATAGTGTCAAAAAAGCTTTAAGCAGGATGCTTTGTCAGCA-ATAGTACTG
65 TTT-TTAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGA-AGTACTA
*
15257131 AAAGAAGCTTCCATGTGGACACGCTTTTGCTACAGTAGCTCTTGAAAAAATAATTTCGAGTTGAC
1 AAAGAAGCTTCCA-GTGGACGCGCTTTTGCTACAGTAGCTC-TGAAAAAATAATTTCGAGTTGAC
*
15257196 GTTTTTGAGCAAATAGTGTCAAAAACGCTTTAAGTAGGATGCTTTGTCAGCAGAAGTACTA
64 GTTTTT-AGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTA
*
15257257 AAAGAAGC-T-C-----ACGCGCTTTTGGTACAGTAGCTCCTGAAAAAATAATTTCGAGTTGACG
1 AAAGAAGCTTCCAGTGGACGCGCTTTTGCTACAGTAGCT-CTGAAAAAATAATTTCGAGTTGACG
15257315 TTTCTTAGCAAATAGTGTCAAAAACGCTTTA
65 TTT-TTAGCAAATAGTGTCAAAAACGCTTTA
15257346 GAGAGGCTAA
Statistics
Matches: 197, Mismatches: 13, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
118 72 0.37
119 3 0.02
124 1 0.01
125 39 0.20
126 81 0.41
127 1 0.01
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.29
Consensus pattern (123 bp):
AAAGAAGCTTCCAGTGGACGCGCTTTTGCTACAGTAGCTCTGAAAAAATAATTTCGAGTTGACGT
TTTTAGCAAATAGTGTCAAAAACGCTTTAAGCAGGATGCTTTGTCAGCAGAAGTACTA
Found at i:15261933 original size:952 final size:951
Alignment explanation
Indices: 15259485--15262433 Score: 5074
Period size: 952 Copynumber: 3.1 Consensus size: 951
15259475 TAAATCAAAA
*
15259485 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCATAT
1 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
*
15259550 ACAGACCAGAGTTATCTATACAGCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
66 ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
* *
15259615 CAACAGATTACATGAGCTTCCATCCGGGTAACAAGACTCTTAATAAGTTCCAC-TTCCAAGTCTT
131 CAACAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTCTTAATAAGTTCCACTTTCCAAGTCTT
* *
15259679 TGCTGATTGATCAACAAGGTCTGATATTTTTTCAATACCATTTTTTGTGGTAGTAGCTTGAATTC
196 TGCTGATTGATCAATAAGGTCTGATATTTTTTCAATACCATTTTTTGCGGTAGTAGCTTGAATTC
15259744 CCCCTCCCCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCGGTAAAG
261 CCCCTCCCCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCGGTAAAG
*
15259809 GGATCGGAGACGAATTTGTTGAGTACTGTTCCACTGCCCATAACCGAGCCTCTATTATTCCTAAT
326 GGATCGGAGACGAATTTGTTGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTATTATTCCTAAT
*
15259874 GACAAAACGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATTGAAGTTCACCTTAACAAA
391 GACAAAACGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATCGAAGTTCACCTTAACAAA
*
15259939 AGGTTCTTGAGGGGGATTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCA
456 AGGTTCTTGAGGGGGCTTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCA
15260004 ACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTT
521 ACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTT
*
15260069 CCTTCCATTATGCGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCACC
586 CCTTCCATTATACGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCACC
15260134 AAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAA
651 AAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAA
* *
15260199 AGTTGACCAGTCAACACAGATTGATCACCAAACATTTTTTACAGGGCCACACATCAGAAGGGTAT
716 AGTTGACCAGTCAACACCGATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAGGGTAT
* *
15260264 GCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGCGAGGAATTTATTCTTCTGTTG
781 GCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGAGATGAATTTATTCTTCTGTTG
*
15260329 TAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTGATTTTTGG
846 TAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTAATTTTT-G
* *
15260394 GGGGGAGATTTAACTCCCAAATCTGCTATAAAATCTTGTATG
910 GGGGGAGATTTAGCTCCCAAATCTGCTGTAAAATCTTGTATG
*
15260436 ATTGGTACTTATAGTGTCATTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
1 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
15260501 ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
66 ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
* *
15260566 CAATAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTCTTAATAAGTTCAACTTTCCAAGTCTT
131 CAACAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTCTTAATAAGTTCCACTTTCCAAGTCTT
* *
15260631 TGCTGATTGATCAATAGGGTCTGATATTTTTTCAATACCATTTTTTGCGGTTGTAGCTTGAATTC
196 TGCTGATTGATCAATAAGGTCTGATATTTTTTCAATACCATTTTTTGCGGTAGTAGCTTGAATTC
*
15260696 CCCCTCCTCCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGAAAAGCTATGGCTTCTGCGGTAAA
261 CCCCTCC-CCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCGGTAAA
* *
15260761 GGGATCGGAGAAGAATTTGTTGAGTACTGTTCCGCTGCCCATAACCGAGCCTTTATTATTCCTAA
325 GGGATCGGAGACGAATTTGTTGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTATTATTCCTAA
** *
15260826 TGACAAAACGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCATTATCAAAGTTCACCTTAACAA
390 TGACAAAACGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATCGAAGTTCACCTTAACAA
* *
15260891 AAGGTTCTGGAGGGGGCTTCCATATTGGAGTCATTATTTTCACCTGGGCAGGTATTTTATTTCTC
455 AAGGTTCTTGAGGGGGCTTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTC
*
15260956 AACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGGCTTTT
520 AACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTT
*
15261021 TCCTTCCATTATACGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGTAGCAATCTCAC
585 TCCTTCCATTATACGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCAC
*
15261086 CAAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTACGAAAATCCATATTTTCATTTA
650 CAAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTA
15261151 AAGTTGACCAGTCAACACCGATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAGGGTA
715 AAGTTGACCAGTCAACACCGATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAGGGTA
15261216 TGCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGAGATGAATTTATTCTTCTGTT
780 TGCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGAGATGAATTTATTCTTCTGTT
* * *
15261281 GTAGAGATTTGTTGCAGTAGGAATGTATTCATGTCTAAATCACCAAATGGCGATTCTAATTTTTG
845 GTAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTAATTTTTG
*
15261346 GGGGGAGATGTAGCTCCCAAATCTGCTGTAAAATCTTGTATG
910 GGGGGAGATTTAGCTCCCAAATCTGCTGTAAAATCTTGTATG
15261388 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
1 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
*
15261453 ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGAAATA
66 ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
*
15261518 CAACAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTGTTAATAAGTTCCACTTTCCAAGTCTT
131 CAACAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTCTTAATAAGTTCCACTTTCCAAGTCTT
* * * *
15261583 TGCTGATTGATCAATAAGGTCTTATACTTTTTCAATACCAGTGTTTGCGGTAGTAGCTTGAATTC
196 TGCTGATTGATCAATAAGGTCTGATATTTTTTCAATACCATTTTTTGCGGTAGTAGCTTGAATTC
* * *
15261648 CCCCTCCCCCCATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTACTGTAAAG
261 CCCCTCCCCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCGGTAAAG
* * ** *
15261713 GGATCGGATACGAATTTGTGGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTGCTATTCCAAAT
326 GGATCGGAGACGAATTTGTTGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTATTATTCCTAAT
* * * *
15261778 GACAAAACTGGAATAGCAGTGGTAGAGGGTTGCGTTAAACGCAGCATCGAAGTTCACCTTGACAA
391 GACAAAAC-GGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATCGAAGTTCACCTTAACAA
* *
15261843 AAGGTTCTTGAGGGGGCTTCCATATTGGAGTAATTGTTTTCACCTGGGCAAGTATTTTATTTCTC
455 AAGGTTCTTGAGGGGGCTTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTC
* * *
15261908 AACTTCTTCATCTCCCTTATAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTT
520 AACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTT
* * **
15261973 TCCTTCCATTATGA-GCTTCTTTCAGGCTTGCCAGAGTGCCCAAGCCATGACTGCAGCAATCTCA
585 TCCTTCCATTAT-ACGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCA
*
15262037 CCAAAATCATGCCCTTGTTTCGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTT
649 CCAAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTT
* * * *
15262102 AAAGTTGACCAGTCAACATCAATTGATCGCCAAACATTTTTTGCAAGGCCACACATCAGAAGGGT
714 AAAGTTGACCAGTCAACACCGATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAGGGT
* * * * *
15262167 ATGCATAAAATTCTCAGGAGCTTTTCCACGGCTAGGACAAATGGGAGATGAATTTATTCTTCTAT
779 ATGCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGAGATGAATTTATTCTTCTGT
*
15262232 TGTAGAGATTAGCTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTAATTTTT
844 TGTAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTAATTTTT
* * *
15262297 GGAGGGAGATTTAGCACCCGAATCTGCTTGTAAAATCTTGTATG
909 GGGGGGAGATTTAGCTCCCAAATCTGC-TGTAAAATCTTGTATG
* * * *
15262341 ATTGGTACTTATAGTGTCGTTGATGTTCAATTCGACAAGACAGTGGTAACCACTGCATACCGTAT
1 ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
* * *
15262406 ACATACCAAAGTTATCTGTACACCACAC
66 ACAGACCAGAGTTATCTATACACCACAC
15262434 TGTAGAGGCC
Statistics
Matches: 1888, Mismatches: 105, Indels: 8
0.94 0.05 0.00
Matches are distributed among these distances:
951 296 0.16
952 871 0.46
953 721 0.38
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.31
Consensus pattern (951 bp):
ATTGGTACTTATAGTGTCGTTGATATTCGATTCGATAAGACAGCGGTAACCACTGCATACCGTAT
ACAGACCAGAGTTATCTATACACCACACCATTTTATCTTCAATTGTGTAAATTGAAAGAGGAATA
CAACAGATTGCATGAGCTTCCATCCGGGTAAAAAGACTCTTAATAAGTTCCACTTTCCAAGTCTT
TGCTGATTGATCAATAAGGTCTGATATTTTTTCAATACCATTTTTTGCGGTAGTAGCTTGAATTC
CCCCTCCCCCTATTTCACGTGAAAGGTTCAAGGCCTGGAGACAAGCTATGGCTTCTGCGGTAAAG
GGATCGGAGACGAATTTGTTGAGTACTGTTCCGCTGCCCATAACCGAGCCTCTATTATTCCTAAT
GACAAAACGGAATAGGAGTGGTTGAGGGTTGCTTTAAACGCAGCATCGAAGTTCACCTTAACAAA
AGGTTCTTGAGGGGGCTTCCATATTGGAGTCATTGTTTTCACCTGGGCAGGTATTTTATTTCTCA
ACTCCCTCATCTCCCTTGTAATGCTGAAGATAATAGAGCATATATCTTGGACTGGTTGTCTTTTT
CCTTCCATTATACGCTTGTTTCAAGCTTGCCAGAGTGCCCAAGCCATGGTTGCAGCAATCTCACC
AAAATCATGCCCTTGTTTTGAAAAACAACATTAAGCCAGGTGCGAAAATCCATATTTTCATTTAA
AGTTGACCAGTCAACACCGATTGATCGCCAAACATTTTTTACAGGGCCACACATCAGAAGGGTAT
GCATAAAATTCTCATGAGCCTTTCCACAGCTAGGACAAATAGGAGATGAATTTATTCTTCTGTTG
TAGAGATTAGTTGCAGTAGGAATGTACTCATGTGTAAATCACCAAATGGCGATTCTAATTTTTGG
GGGGAGATTTAGCTCCCAAATCTGCTGTAAAATCTTGTATG
Found at i:15264076 original size:2 final size:2
Alignment explanation
Indices: 15264071--15264106 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
15264061 TTTTACCTAT
15264071 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
15264107 CACCTACAAG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:15265440 original size:106 final size:106
Alignment explanation
Indices: 15265253--15265443 Score: 303
Period size: 106 Copynumber: 1.8 Consensus size: 106
15265243 GAGATAATCA
* *
15265253 AATATTTGGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGTTGGGTTTCGATTACTCGTTTG
1 AATATTTGGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTACTCGTTCG
* * *
15265318 GCCAAATAGTCGAATATCCTTTCGAAATTTTAAAACGAGGC
66 ACCAAATAGCCAAATATCCTTTCGAAATTTTAAAACGAGGC
* *
15265359 AATATGTT-GCGTTTGGAAATTCGAGAGAACGTGCCCTAACGTGCTGGGTTTCGATTTCTCGTTC
1 AATAT-TTGGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTACTCGTTC
15265423 GACCAAATAGCCAAATATCCT
65 GACCAAATAGCCAAATATCCT
15265444 CTTAAATCTA
Statistics
Matches: 77, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
106 75 0.97
107 2 0.03
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (106 bp):
AATATTTGGCGTTTGGAAATTCGAGAAAACGTGCCCTAACGTGCTGGGTTTCGATTACTCGTTCG
ACCAAATAGCCAAATATCCTTTCGAAATTTTAAAACGAGGC
Found at i:15275772 original size:19 final size:19
Alignment explanation
Indices: 15275748--15275820 Score: 137
Period size: 19 Copynumber: 3.8 Consensus size: 19
15275738 AATCATATCT
15275748 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
*
15275767 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
15275786 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
15275805 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
15275821 TTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 52 1.00
ACGTcount: A:0.37, C:0.16, G:0.10, T:0.37
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15275797 original size:38 final size:39
Alignment explanation
Indices: 15275725--15275820 Score: 140
Period size: 38 Copynumber: 2.4 Consensus size: 39
15275715 AAATTAAATC
*
15275725 TCTAAGATTACAAAATCATATCTTCTAAGATTGCATATCATA
1 TCTAAGATTAC-ATATCATA--TTCTAAGATTGCATATCATA
15275767 TCTAAGATTACATATCATA-TCTAAGATTGCATATCATA
1 TCTAAGATTACATATCATATTCTAAGATTGCATATCATA
*
15275805 TCTAAGATTGCATATC
1 TCTAAGATTACATATC
15275821 TTTGAAGATT
Statistics
Matches: 52, Mismatches: 2, Indels: 4
0.90 0.03 0.07
Matches are distributed among these distances:
38 34 0.65
41 7 0.13
42 11 0.21
ACGTcount: A:0.39, C:0.17, G:0.08, T:0.36
Consensus pattern (39 bp):
TCTAAGATTACATATCATATTCTAAGATTGCATATCATA
Found at i:15276491 original size:45 final size:45
Alignment explanation
Indices: 15276332--15276493 Score: 161
Period size: 45 Copynumber: 3.6 Consensus size: 45
15276322 TTCTAATCCA
* * ** * *
15276332 CTCCACTACAACTTTAGGGAGATGAGA-TTTTTTTATTTAGTCTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTACTTTCTTGAGTCTG
* * *
15276376 C-CCTACTGCAATTTCA-GGAGGATAAAACTTGA-TTTCTTGAGTCTG
1 CTCC-ACTACAACTTCAGGGA-GATAAGACTT-ACTTTCTTGAGTCTG
* * *
15276421 CTCCACTGCAACTTCAGGGAGATAAGACTTACTTTCTTGGGTTTG
1 CTCCACTACAACTTCAGGGAGATAAGACTTACTTTCTTGAGTCTG
15276466 CTCCACTACAACTTCAGGGAGATAAGAC
1 CTCCACTACAACTTCAGGGAGATAAGAC
15276494 CCGATGTGAT
Statistics
Matches: 98, Mismatches: 13, Indels: 13
0.79 0.10 0.10
Matches are distributed among these distances:
43 5 0.05
44 16 0.16
45 72 0.73
46 5 0.05
ACGTcount: A:0.27, C:0.21, G:0.20, T:0.33
Consensus pattern (45 bp):
CTCCACTACAACTTCAGGGAGATAAGACTTACTTTCTTGAGTCTG
Found at i:15276589 original size:44 final size:44
Alignment explanation
Indices: 15276511--15276600 Score: 110
Period size: 44 Copynumber: 2.0 Consensus size: 44
15276501 GATCTGCTCT
*
15276511 CTGCAACTTCAGAGAGATAAGATCTGTGGTTTTAATCCACTCCA
1 CTGCAACTTCAGAGAGATAAGATCTGTGGCTTTAATCCACTCCA
* * * **
15276555 CTGCAACTTCAGGGAGATAGGAT-TATTGGCTTTAATCTGCTCCA
1 CTGCAACTTCAGAGAGATAAGATCT-GTGGCTTTAATCCACTCCA
15276599 CT
1 CT
15276601 TCAGGGAGAT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
43 1 0.03
44 38 0.97
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (44 bp):
CTGCAACTTCAGAGAGATAAGATCTGTGGCTTTAATCCACTCCA
Found at i:15276701 original size:211 final size:212
Alignment explanation
Indices: 15276410--15276811 Score: 585
Period size: 211 Copynumber: 1.9 Consensus size: 212
15276400 AAACTTGATT
* * * * *
15276410 TCTTGAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTACTTTCTTGGGTTTGCTCCACTAC
1 TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTACTTACTTGAGTCTGCTCCACTAC
* * * *
15276475 AACTTCAGGGAGATAAGACCCGATGTGATCTGCTCTCTGCAACTTCAGAGAGATAAGATCTGTGG
66 AACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGA
15276540 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTTCAG
131 TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTTCAG
15276605 GGAGATAAGATTCGCCA
196 GGAGATAAGATTCGCCA
* *
15276622 TCTTCAGTCTGC-CTCACTACAACTTCA-GGAGGATAAGGCTTGCTTACTT-AGTCTGCTCCACT
1 TCTTCAGTCTGCTC-CACTACAACTTCAGGGA-GATAAGACTTACTTACTTGAGTCTGCTCCACT
* * * *
15276684 TCAATTTCAGGGAGATAAGACTAGATGCGATCTGCTCTCTACAATTTCAGAGAGATAAGATCTGT
64 ACAACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGT
* * ** *
15276749 GATTTTAATCCGCTCCATTGTGACTTCAGGGAGATAGGATTATTGGCTTTAATTTGCTCCACT
129 GATTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACT
15276812 GCAACTTTAG
Statistics
Matches: 168, Mismatches: 20, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
211 130 0.77
212 38 0.23
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (212 bp):
TCTTCAGTCTGCTCCACTACAACTTCAGGGAGATAAGACTTACTTACTTGAGTCTGCTCCACTAC
AACTTCAGGGAGATAAGACCAGATGCGATCTGCTCTCTACAACTTCAGAGAGATAAGATCTGTGA
TTTTAATCCACTCCACTGCAACTTCAGGGAGATAGGATTATTGGCTTTAATCTGCTCCACTTCAG
GGAGATAAGATTCGCCA
Found at i:15277247 original size:44 final size:44
Alignment explanation
Indices: 15277197--15277318 Score: 178
Period size: 44 Copynumber: 2.8 Consensus size: 44
15277187 ATCTGCTATT
* *
15277197 TTCAACCTACTCCACTGTTGCTTAGGGAGATAGGA-TTCACAATC
1 TTCAACCTATTCCACTGCTGCTTAGGGAGATAGGACTT-ACAATC
15277241 TTCAACCTATTCCACTGCTGAC-TAGGGAGATAGGACTTACAATC
1 TTCAACCTATTCCACTGCTG-CTTAGGGAGATAGGACTTACAATC
15277285 TTCAACCTATTCCACTGCTG-TCTAGGGAGATAGG
1 TTCAACCTATTCCACTGCTGCT-TAGGGAGATAGG
15277319 GCTGGGGTCA
Statistics
Matches: 72, Mismatches: 2, Indels: 8
0.88 0.02 0.10
Matches are distributed among these distances:
44 69 0.96
45 3 0.04
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (44 bp):
TTCAACCTATTCCACTGCTGCTTAGGGAGATAGGACTTACAATC
Found at i:15277377 original size:88 final size:88
Alignment explanation
Indices: 15277285--15277991 Score: 556
Period size: 88 Copynumber: 8.0 Consensus size: 88
15277275 ACTTACAATC
* *** * * * *
15277285 TTCAACCTATTCCACTGCTGTCTAGGGAGATAGGGCTGGGGTCATCGATCTGCTTTGCTGTTGGC
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
15277350 GCAGGAAGGCAAGATCTGCTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * *
15277373 TTCAACCTGCTCCCCTGCAACCCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTTGGT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
15277438 GCAGGAAGGCAAGATCTGCTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * * * ** * * **
15277461 TTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGTTGGTGTTTTCAATCTGCTTCGCTGTCGAT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
* * *
15277526 GCAGGAAGGTAAGATTTGTTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * * * * * * *
15277549 TTTAACCTGCTCCGCTACAAACCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
*
15277614 GCAGGAAGGCAAGATCTGTTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * * * * * * *
15277637 TTTAACCTGCTCCGCTACAACCCAGAGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
15277702 GCAGGAAGGCAAGATCTG-TAATT
66 GCAGGAAGGCAAGATCTGCT-ATT
* * * * * * * * *
15277725 TTTAA-CTGGCTCCACTGCAATCCAGGGAGGCAAGACTAGTGTCTTCGATCTGCTTCGCTGTCGG
1 TTCAACCT-ACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGG
**
15277789 TACAGGAAGGCAAGATCTGCTATT
65 CGCAGGAAGGCAAGATCTGCTATT
* * * * * ** * * * * * *
15277813 TTTAACATGCTCCGCTGCAACCTA-GGAGGTAAGGCTAGTGTCTTTGATCTGCTTCGCTGTCGGT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
*
15277877 GCTGGAAGGCAAGATCTGCTATT
66 GCAGGAAGGCAAGATCTGCTATT
* * * * * * * * * * *
15277900 TTTAACCTGCTCCGCTACAAACCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGT
1 TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
* *
15277965 GCAGGAAGGCAAGATCTGTTATC
66 GCAGGAAGGCAAGATCTGCTATT
15277988 TTCA
1 TTCA
15277992 CTGATCTGCT
Statistics
Matches: 550, Mismatches: 64, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
87 81 0.15
88 467 0.85
89 2 0.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (88 bp):
TTCAACCTACTCCACTGCAACCCAGGGAGACAAGGCTGGGGTCATCGATCTGCTTCGCTGTTGGC
GCAGGAAGGCAAGATCTGCTATT
Found at i:15277406 original size:44 final size:44
Alignment explanation
Indices: 15277351--15277839 Score: 177
Period size: 44 Copynumber: 11.1 Consensus size: 44
15277341 GCTGTTGGCG
*
15277351 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCCCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
* * * * * * * * *****
15277395 CAGGGAGGCAAG-GCTGGTGTCTTCGATCTGCTTCGCTGTTGGTG
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTG-CAACC
* *
15277439 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAACC
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
* * * * * * * **
15277483 CAGGGAGGCAAGGT-TGGTGTTTTCAATCTGCTTCGCTGTCGATG
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTG-CAACC
* * * * * *
15277527 CAGGAAGGTAAGATTTGTTATTTTTAACCTGCTCCGCTACAAAC
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
* * * * * * * * ****
15277571 CAGGGAGGCAAGGT-TGGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTG-CAACC
* * *
15277615 CAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTACAACC
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
* * * * * * * ****
15277659 CA-GAGAGGCAA-AGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTG
1 CAGGA-AGGCAAGATCTGCTATTTTCAACCTGCTCCGCTG-CAACC
* * *
15277703 CAGGAAGGCAAGATCTG-TAATTTTTAA-CTGGCTCCACTGCAATC
1 CAGGAAGGCAAGATCTGCT-ATTTTCAACCT-GCTCCGCTGCAACC
* * * * * * ****
15277747 CAGGGAGGCAAGA-CTAG-TGTCTTCGATCTGCTTCGCTGTCGGTA
1 CAGGAAGGCAAGATCT-GCTATTTTCAACCTGCTCCGCTG-CAACC
* *
15277791 CAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
*
15277835 TAGGA
1 CAGGA
15277840 GGTAAGGCTA
Statistics
Matches: 301, Mismatches: 127, Indels: 34
0.65 0.27 0.07
Matches are distributed among these distances:
43 85 0.28
44 132 0.44
45 84 0.28
ACGTcount: A:0.22, C:0.24, G:0.27, T:0.28
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCGCTGCAACC
Found at i:15277626 original size:176 final size:176
Alignment explanation
Indices: 15277329--15277982 Score: 965
Period size: 176 Copynumber: 3.7 Consensus size: 176
15277319 GCTGGGGTCA
* * * * * * *
15277329 TCGATCTGCTTTGCTGTTGGCGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCCCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
*
15277394 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATCTGCTA
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA
*
15277459 TTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGTTGGTGTTT
131 TTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTTT
* * * * *
15277505 TCAATCTGCTTCGCTGTCGATGCAGGAAGGTAAGATTTGTTATTTTTAACCTGCTCCGCTACAAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
* *
15277570 CCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTA
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA
* * *
15277635 TTTTTAACCTGCTCCGCTACAACCCAGAGAGGCAAAGCTGGTGTCT
131 TTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTTT
* *
15277681 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG-TAATTTTTAA-CTGGCTCCACTGCA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCT-ATTTTTAACCT-GCTCCGCTACA
* * * *
15277744 ATCCAGGGAGGCAAGACTAGTGTCTTCGATCTGCTTCGCTGTCGGTACAGGAAGGCAAGATCTGC
64 AACCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGC
* * * * *
15277809 TATTTTTAACATGCTCCGCTGCAACCTA-GGAGGTAAGGCTAGTGTCTT
129 TATTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGT-TT
*
15277857 T-GATCTGCTTCGCTGTCGGTGCTGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
*
15277921 CCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG
15277983 TTATCTTCAC
Statistics
Matches: 426, Mismatches: 47, Indels: 11
0.88 0.10 0.02
Matches are distributed among these distances:
175 128 0.30
176 298 0.70
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (176 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTA
TTTTTAACCTGCTCCGCTACAACCCAGGGAGGCAAGGCTGGTGTTT
Found at i:15277660 original size:264 final size:263
Alignment explanation
Indices: 15277329--15277983 Score: 965
Period size: 264 Copynumber: 2.5 Consensus size: 263
15277319 GCTGGGGTCA
* * * * * *
15277329 TCGATCTGCTTTGCTGTTGGCGCAGGAAGGCAAGATCTGCTATTTTCAACCTGCTCCCCTGCAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
*
15277394 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTTGGTGCAGGAAGGCAAGATCTGCT-
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTG-TA
* ** * *
15277458 ATTTTTAACCT-GCTCCGCTACAACCCAGGGAGGCAAGGTTGGTGTTTTCAATCTGCTTCGCTGT
130 ATTTTTAA-CTGGCTCCACTACAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCGCTGT
* * * * * *
15277522 CGATGCAGGAAGGTAAGATTTGTTATTTTTAACCTGCTCCGCTACAAACC-AGGGAGGCAAGGTT
194 CGATACAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCGCTAC-AACCTA-GGAGGCAAGGCT
*
15277586 GGTGTCT
257 AGTGTCT
*
15277593 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTTATTTTTAACCTGCTCCGCTACAAC
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
* *
15277658 CCAGAGAGGCAAAGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTAA
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTAA
* * *
15277723 TTTTTAACTGGCTCCACTGCAATCCAGGGAGGCAAGACTAGTGTCTTCGATCTGCTTCGCTGTCG
131 TTTTTAACTGGCTCCACTACAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCGCTGTCG
* * *
15277788 GTACAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCGCTGCAACCTAGGAGGTAAGGCTAGTG
196 ATACAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCGCTACAACCTAGGAGGCAAGGCTAGTG
15277853 TCT
261 TCT
* * *
15277856 TTGATCTGCTTCGCTGTCGGTGCTGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAA
1 TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
*
15277921 CCAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGT
66 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGT
15277984 TATCTTCACT
Statistics
Matches: 353, Mismatches: 35, Indels: 7
0.89 0.09 0.02
Matches are distributed among these distances:
263 144 0.41
264 209 0.59
ACGTcount: A:0.21, C:0.23, G:0.28, T:0.28
Consensus pattern (263 bp):
TCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTACAAC
CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCGCTGTCGGTGCAGGAAGGCAAGATCTGTAA
TTTTTAACTGGCTCCACTACAACCCAGGGAGGCAAGACTAGTGTCTTCAATCTGCTTCGCTGTCG
ATACAGGAAGGCAAGATCTGCTATTTTTAACATGCTCCGCTACAACCTAGGAGGCAAGGCTAGTG
TCT
Found at i:15279228 original size:20 final size:21
Alignment explanation
Indices: 15279205--15279246 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
15279195 TTCTTTTCTC
15279205 TTTTTT-T-TTTTGAAAT-TT
1 TTTTTTATATTTTGAAATATT
15279223 TTTTTTATATTTTGAAATATT
1 TTTTTTATATTTTGAAATATT
15279244 TTT
1 TTT
15279247 GATTGAATCT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 6 0.29
19 1 0.05
20 9 0.43
21 5 0.24
ACGTcount: A:0.21, C:0.00, G:0.05, T:0.74
Consensus pattern (21 bp):
TTTTTTATATTTTGAAATATT
Found at i:15280202 original size:25 final size:26
Alignment explanation
Indices: 15280151--15280211 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
15280141 AAGAAAATCC
* **
15280151 AAAAGAATGAAAGAATAATTATTTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
*
15280177 AAAAGAATGAAAAAAT-ATTGGCTCA
1 AAAAGAATGAAAAAATAATTAGCTCA
15280202 AAAATGAATG
1 AAAA-GAATG
15280212 CAAAGATGTA
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
25 10 0.33
26 20 0.67
ACGTcount: A:0.57, C:0.05, G:0.15, T:0.23
Consensus pattern (26 bp):
AAAAGAATGAAAAAATAATTAGCTCA
Found at i:15284791 original size:22 final size:21
Alignment explanation
Indices: 15284756--15284870 Score: 89
Period size: 19 Copynumber: 5.7 Consensus size: 21
15284746 AAAAGGTATC
* *
15284756 TACAAATTAAATCTCTAAGAT
1 TACAAATCATATCTCTAAGAT
15284777 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAAGAT
* *
15284800 TGCACATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
15284819 TACATATCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
* * *
15284838 TGCATACCATA--TCTAAGAT
1 TACAAATCATATCTCTAAGAT
*
15284857 TACATATCATATCT
1 TACAAATCATATCT
15284871 AAGATTGCAT
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
19 51 0.64
21 4 0.05
22 15 0.19
23 10 0.12
ACGTcount: A:0.41, C:0.18, G:0.06, T:0.35
Consensus pattern (21 bp):
TACAAATCATATCTCTAAGAT
Found at i:15284816 original size:19 final size:19
Alignment explanation
Indices: 15284792--15284883 Score: 148
Period size: 19 Copynumber: 4.8 Consensus size: 19
15284782 AATCATATCT
*
15284792 TCTAAGATTGCACATCATA
1 TCTAAGATTGCATATCATA
*
15284811 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
*
15284830 TCTAAGATTGCATACCATA
1 TCTAAGATTGCATATCATA
*
15284849 TCTAAGATTACATATCATA
1 TCTAAGATTGCATATCATA
15284868 TCTAAGATTGCATATC
1 TCTAAGATTGCATATC
15284884 CTTCAAGATT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 66 1.00
ACGTcount: A:0.38, C:0.18, G:0.09, T:0.35
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:15284880 original size:38 final size:38
Alignment explanation
Indices: 15284769--15284881 Score: 163
Period size: 38 Copynumber: 2.9 Consensus size: 38
15284759 AAATTAAATC
* * *
15284769 TCTAAGATTACAAAATCATATCTTCTAAGATTGCACATCATA
1 TCTAAGATTAC-ATATCATA---TCTAAGATTGCATACCATA
15284811 TCTAAGATTACATATCATATCTAAGATTGCATACCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATACCATA
15284849 TCTAAGATTACATATCATATCTAAGATTGCATA
1 TCTAAGATTACATATCATATCTAAGATTGCATA
15284882 TCCTTCAAGA
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 50 0.74
41 7 0.10
42 11 0.16
ACGTcount: A:0.40, C:0.18, G:0.08, T:0.35
Consensus pattern (38 bp):
TCTAAGATTACATATCATATCTAAGATTGCATACCATA
Found at i:15288475 original size:53 final size:53
Alignment explanation
Indices: 15288397--15288555 Score: 195
Period size: 48 Copynumber: 3.1 Consensus size: 53
15288387 ACATGTGAAA
* * * * * *
15288397 ATATGATTATGTG-CTTCAGTATAAGATCATAGCTAGGTTATGGCATCGGTGTG
1 ATATGA-TATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTG
*
15288450 ATATGATATGTGATTTCCGTGTAAGACCATATCTGGGATATGGCAT---TG-G
1 ATATGATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTG
*
15288499 -TGTGATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTG
1 ATATGATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTG
15288551 ATATG
1 ATATG
15288556 TGTTTCCGTG
Statistics
Matches: 90, Mismatches: 10, Indels: 12
0.80 0.09 0.11
Matches are distributed among these distances:
48 43 0.48
49 1 0.01
50 2 0.02
51 2 0.02
52 7 0.08
53 35 0.39
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.35
Consensus pattern (53 bp):
ATATGATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTGTG
Found at i:15288540 original size:101 final size:95
Alignment explanation
Indices: 15288415--15288597 Score: 235
Period size: 95 Copynumber: 1.9 Consensus size: 95
15288405 ATGTGCTTCA
* *
15288415 GTATAAGATCATAGCTAGGTTATGGCATCGGTGTGATATGATATGTGATTTCCGTGTAAGACCAT
1 GTATAAGACCATAGCTAGGATATGGCATC-G-GTG---TGATATGTG-TTTCCGTGTAAGACCAT
15288480 -ATCTGGGATATGGCATT-GGTGTGATATGTGATTTCC
60 AAT-TGGGATATGGC-TTCGGTGTGATATGTGATTTCC
* *
15288516 GTATAAGACCATATCTGGGATATGGCATCGGTGTGATATGTGTTTCCGTGTAAGACCATAATTGG
1 GTATAAGACCATAGCTAGGATATGGCATCGGTGTGATATGTGTTTCCGTGTAAGACCATAATTGG
*
15288581 GCTATGGCTTCGGTGTG
66 GATATGGCTTCGGTGTG
15288598 TGATATTTGA
Statistics
Matches: 75, Mismatches: 5, Indels: 10
0.83 0.06 0.11
Matches are distributed among these distances:
94 2 0.03
95 33 0.44
96 11 0.15
99 3 0.04
100 1 0.01
101 25 0.33
ACGTcount: A:0.23, C:0.13, G:0.29, T:0.34
Consensus pattern (95 bp):
GTATAAGACCATAGCTAGGATATGGCATCGGTGTGATATGTGTTTCCGTGTAAGACCATAATTGG
GATATGGCTTCGGTGTGATATGTGATTTCC
Found at i:15288587 original size:47 final size:48
Alignment explanation
Indices: 15288453--15288597 Score: 231
Period size: 48 Copynumber: 3.0 Consensus size: 48
15288443 CGGTGTGATA
*
15288453 TGATATGTGATTTCCGTGTAAGACCATATCTGGGATATGGCATTGGTG
1 TGATATGTGATTTCCGTGTAAGACCATATCTGGGATATGGCATCGGTG
*
15288501 TGATATGTGATTTCCGTATAAGACCATATCTGGGATATGGCATCGGTG
1 TGATATGTGATTTCCGTGTAAGACCATATCTGGGATATGGCATCGGTG
* *
15288549 TGATATGTG-TTTCCGTGTAAGACCATAAT-TGGGCTATGGCTTCGGTG
1 TGATATGTGATTTCCGTGTAAGACCAT-ATCTGGGATATGGCATCGGTG
15288596 TG
1 TG
15288598 TGATATTTGA
Statistics
Matches: 91, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
47 34 0.37
48 57 0.63
ACGTcount: A:0.22, C:0.14, G:0.29, T:0.35
Consensus pattern (48 bp):
TGATATGTGATTTCCGTGTAAGACCATATCTGGGATATGGCATCGGTG
Found at i:15293708 original size:20 final size:20
Alignment explanation
Indices: 15293682--15293733 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
15293672 TTTCTCACAT
15293682 TTCTCTCTTAAATCTCTCAAA
1 TTCTCTCTTAAA-CTCTCAAA
* *
15293703 TT-TCTCAATCAACTCTCAAA
1 TTCTCTC-TTAAACTCTCAAA
15293723 TTCTCTCTTAA
1 TTCTCTCTTAA
15293734 TTTTTTTTAC
Statistics
Matches: 25, Mismatches: 4, Indels: 5
0.74 0.12 0.15
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (20 bp):
TTCTCTCTTAAACTCTCAAA
Found at i:15293796 original size:24 final size:24
Alignment explanation
Indices: 15293769--15293822 Score: 65
Period size: 24 Copynumber: 2.3 Consensus size: 24
15293759 ATCCTAATTC
**
15293769 TATTTTTATTATATTTTTTATTAA
1 TATTTTTAAGATATTTTTTATTAA
* *
15293793 TATTTTCAAGATTTTTTTTATTAA
1 TATTTTTAAGATATTTTTTATTAA
15293817 -ATTTTT
1 TATTTTT
15293823 TTCCGTGTTC
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
23 5 0.20
24 20 0.80
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.69
Consensus pattern (24 bp):
TATTTTTAAGATATTTTTTATTAA
Found at i:15298855 original size:27 final size:26
Alignment explanation
Indices: 15298794--15298871 Score: 66
Period size: 27 Copynumber: 2.9 Consensus size: 26
15298784 TGTCAAGAAA
* **
15298794 GAATAGCCTTTGTGGCTAACACTGAAAG
1 GAAT-GCCTTTGTGGCAAATTCT-AAAG
15298822 GAATGCCTTTGTGGCAAATTCTAAATG
1 GAATGCCTTTGTGGCAAATTCTAAA-G
* ** *
15298849 GATTGCCTCAGTGGCATATTCTA
1 GAATGCCTTTGTGGCAAATTCTA
15298872 TCTGAATGTA
Statistics
Matches: 42, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
26 3 0.07
27 35 0.83
28 4 0.10
ACGTcount: A:0.28, C:0.18, G:0.23, T:0.31
Consensus pattern (26 bp):
GAATGCCTTTGTGGCAAATTCTAAAG
Found at i:15314185 original size:28 final size:28
Alignment explanation
Indices: 15314143--15314198 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
15314133 CTTTTTCCTT
* *
15314143 TGCATGCATTTGGCTAAGAAAGATGATA
1 TGCATGAATTCGGCTAAGAAAGATGATA
15314171 TGCATGAATTCGGCTAAGAAAGATGATA
1 TGCATGAATTCGGCTAAGAAAGATGATA
15314199 ATAACCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.38, C:0.11, G:0.25, T:0.27
Consensus pattern (28 bp):
TGCATGAATTCGGCTAAGAAAGATGATA
Found at i:15315758 original size:23 final size:20
Alignment explanation
Indices: 15315709--15315758 Score: 57
Period size: 22 Copynumber: 2.4 Consensus size: 20
15315699 TTTTTATTTT
15315709 TTATTTTTTTATTTTTAAAA
1 TTATTTTTTTATTTTTAAAA
*
15315729 -TACTTTTTTATTTTTTTTAAAA
1 TTA--TTTTT-TTATTTTTAAAA
15315751 TTATTTTT
1 TTATTTTT
15315759 GGTGTTTATT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
19 2 0.08
21 10 0.40
22 11 0.44
23 2 0.08
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (20 bp):
TTATTTTTTTATTTTTAAAA
Found at i:15321479 original size:47 final size:47
Alignment explanation
Indices: 15321369--15321481 Score: 172
Period size: 47 Copynumber: 2.4 Consensus size: 47
15321359 AAGGAGGAAG
* * * *
15321369 AAGTGACAAATTATCTACAAAAGTGGTGGCTTATCCATAATATTATT
1 AAGTGACAATTTATCTGCAAAAGTGGTAGCTTATCCACAATATTATT
* *
15321416 AAGTGACAATTTATCTGCAAAAGTGGTAGCTTGTTCACAATATTATT
1 AAGTGACAATTTATCTGCAAAAGTGGTAGCTTATCCACAATATTATT
15321463 AAGTGACAATTTATCTGCA
1 AAGTGACAATTTATCTGCA
15321482 TTACTGTGAC
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 60 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (47 bp):
AAGTGACAATTTATCTGCAAAAGTGGTAGCTTATCCACAATATTATT
Found at i:15324312 original size:17 final size:16
Alignment explanation
Indices: 15324286--15324337 Score: 61
Period size: 17 Copynumber: 3.2 Consensus size: 16
15324276 TATAATTCAT
15324286 AAAAATTTAAAAAATA
1 AAAAATTTAAAAAATA
15324302 AAAATATTTAAAAAATCA
1 AAAA-ATTTAAAAAAT-A
* *
15324320 ACAAATCTAAAAAA-A
1 AAAAATTTAAAAAATA
15324335 AAA
1 AAA
15324338 GTTCATAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 3 0.10
16 4 0.13
17 20 0.65
18 4 0.13
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAAATTTAAAAAATA
Found at i:15341136 original size:5 final size:5
Alignment explanation
Indices: 15341126--15341150 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15341116 CAAGTAACCA
15341126 TAAAC TAAAC TAAAC TAAAC TAAAC
1 TAAAC TAAAC TAAAC TAAAC TAAAC
15341151 AACTATTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
TAAAC
Found at i:15342395 original size:9 final size:9
Alignment explanation
Indices: 15342382--15342447 Score: 89
Period size: 9 Copynumber: 7.4 Consensus size: 9
15342372 TTTTGTTAAA
*
15342382 AATTAACCA
1 AATTAACCG
*
15342391 AATTAATCG
1 AATTAACCG
*
15342400 AATTACCCG
1 AATTAACCG
15342409 AATTAACCG
1 AATTAACCG
15342418 AATTAACCG
1 AATTAACCG
15342427 AATT-ACCG
1 AATTAACCG
*
15342435 AATTACCCG
1 AATTAACCG
15342444 AATT
1 AATT
15342448 GAATCACTAT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
8 8 0.16
9 42 0.84
ACGTcount: A:0.42, C:0.23, G:0.09, T:0.26
Consensus pattern (9 bp):
AATTAACCG
Found at i:15349982 original size:16 final size:16
Alignment explanation
Indices: 15349914--15349985 Score: 51
Period size: 16 Copynumber: 4.6 Consensus size: 16
15349904 AAAAAATTAA
15349914 TAATTATAATATTTTTT
1 TAATTATAATA-TTTTT
**
15349931 TCAATTAT-ATCCTTTT
1 T-AATTATAATATTTTT
* * *
15349947 T-A-TAAAATATCTAT
1 TAATTATAATATTTTT
*
15349961 TGATTATAATATTTTT
1 TAATTATAATATTTTT
15349977 TAATTATAA
1 TAATTATAA
15349986 AAATGATATT
Statistics
Matches: 40, Mismatches: 11, Indels: 9
0.67 0.18 0.15
Matches are distributed among these distances:
13 2 0.05
14 6 0.15
15 1 0.03
16 22 0.55
17 3 0.08
18 6 0.15
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.56
Consensus pattern (16 bp):
TAATTATAATATTTTT
Found at i:15366758 original size:20 final size:19
Alignment explanation
Indices: 15366719--15366755 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
15366709 CACAAAAGAA
15366719 ACAATTAAAGTTTTGATTC
1 ACAATTAAAGTTTTGATTC
15366738 ACAATATAAA-TTTTGATT
1 ACAAT-TAAAGTTTTGATT
15366756 TCAAGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.41, C:0.08, G:0.08, T:0.43
Consensus pattern (19 bp):
ACAATTAAAGTTTTGATTC
Found at i:15367249 original size:21 final size:22
Alignment explanation
Indices: 15367206--15367250 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
15367196 ACATATTTTA
* *
15367206 TTTTATTTTATATTTATATATT
1 TTTTAATTTATATTTATACATT
*
15367228 TTTTAATTTAT-TTTGTACATT
1 TTTTAATTTATATTTATACATT
15367249 TT
1 TT
15367251 AATTTTTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.24, C:0.02, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTAATTTATATTTATACATT
Found at i:15370260 original size:31 final size:31
Alignment explanation
Indices: 15370193--15370261 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
15370183 GTTATAAATG
* * *
15370193 TAAATATGACATAAAATATAATTAGATGTAT
1 TAAATATAAAATAAAATATAATTACATGTAT
* *
15370224 AAAATATAAAATAATAATATAA-TACATGTCT
1 TAAATATAAAATAA-AATATAATTACATGTAT
15370255 TAAATAT
1 TAAATAT
15370262 GTCATATTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
31 24 0.77
32 7 0.23
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (31 bp):
TAAATATAAAATAAAATATAATTACATGTAT
Found at i:15371926 original size:21 final size:21
Alignment explanation
Indices: 15371887--15371926 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
15371877 TTGACAAAAA
* *
15371887 ACAGATCAGACTTACCATATT
1 ACAGATCAGACTAAACATATT
*
15371908 ACAGATCATACTAAACATA
1 ACAGATCAGACTAAACATA
15371927 CAACATATTA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.45, C:0.23, G:0.07, T:0.25
Consensus pattern (21 bp):
ACAGATCAGACTAAACATATT
Found at i:15375894 original size:31 final size:31
Alignment explanation
Indices: 15375827--15375895 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
15375817 GTTATAAATG
* * *
15375827 TAAATATGACATAAAATATAATTAGATGTAT
1 TAAATATAAAATAAAATATAATTACATGTAT
* *
15375858 AAAATATAAAATAATAATATAA-TACATGTCT
1 TAAATATAAAATAA-AATATAATTACATGTAT
15375889 TAAATAT
1 TAAATAT
15375896 GTCATATTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
31 24 0.77
32 7 0.23
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (31 bp):
TAAATATAAAATAAAATATAATTACATGTAT
Found at i:15379019 original size:31 final size:31
Alignment explanation
Indices: 15378952--15379020 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
15378942 GTTATAAATG
* * *
15378952 TAAATATGACATAAAATATAATTAGATGTAT
1 TAAATATAAAATAAAATATAATTACATGTAT
* *
15378983 AAAATATAAAATAATAATATAA-TACATGTCT
1 TAAATATAAAATAA-AATATAATTACATGTAT
15379014 TAAATAT
1 TAAATAT
15379021 GTCATATTCA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
31 24 0.77
32 7 0.23
ACGTcount: A:0.55, C:0.04, G:0.06, T:0.35
Consensus pattern (31 bp):
TAAATATAAAATAAAATATAATTACATGTAT
Found at i:15387446 original size:51 final size:50
Alignment explanation
Indices: 15387389--15387561 Score: 170
Period size: 51 Copynumber: 3.4 Consensus size: 50
15387379 GCATGGACTG
* * * * * *
15387389 TGTGTAGGCCACTATGTGAAAGTGAAAGTGATGGTTACGTGTGTAGTACTA
1 TGTGCAGGCTACTACGTGAACG-GAAAGTGATGGTCACATGTGTAGTACTA
* * * *
15387440 TGTGTAGGCTACTACGTGTAC-CAGAA-TGATAGGTCGCATGTGTAGTACTA
1 TGTGCAGGCTACTACGTGAACGGA-AAGTGAT-GGTCACATGTGTAGTACTA
* *
15387490 TGTGCAGGCTACTACGTGTATCGGATAGTGATGGTCACATGTGTAGTACTA
1 TGTGCAGGCTACTACGTG-AACGGAAAGTGATGGTCACATGTGTAGTACTA
* *
15387541 TGTGCATGCTACTATGTGAAC
1 TGTGCAGGCTACTACGTGAAC
15387562 CGGTATCATT
Statistics
Matches: 100, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
49 5 0.05
50 37 0.37
51 53 0.53
52 5 0.05
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.31
Consensus pattern (50 bp):
TGTGCAGGCTACTACGTGAACGGAAAGTGATGGTCACATGTGTAGTACTA
Found at i:15387486 original size:50 final size:51
Alignment explanation
Indices: 15387415--15387554 Score: 194
Period size: 50 Copynumber: 2.8 Consensus size: 51
15387405 TGAAAGTGAA
* * *
15387415 AGTGATGGTTACGTGTGTAGTACTATGTGTAGGCTACTACGTGTACCAGA-
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
* * *
15387465 A-TGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTACGTGTATCGGAT
1 AGTGAT-GGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
*
15387516 AGTGATGGTCACATGTGTAGTACTATGTGCATGCTACTA
1 AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTA
15387555 TGTGAACCGG
Statistics
Matches: 79, Mismatches: 8, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
49 4 0.05
50 39 0.49
51 32 0.41
52 4 0.05
ACGTcount: A:0.24, C:0.15, G:0.29, T:0.32
Consensus pattern (51 bp):
AGTGATGGTCACATGTGTAGTACTATGTGCAGGCTACTACGTGTACCAGAT
Found at i:15387558 original size:26 final size:26
Alignment explanation
Indices: 15387477--15387558 Score: 73
Period size: 26 Copynumber: 3.2 Consensus size: 26
15387467 GATAGGTCGC
*
15387477 ATGTGTAGTACTATGTGCAGGCTACT
1 ATGTGTAGTACTATGTGCATGCTACT
* * *
15387503 ACGTGTA-T-CGGATAGTG-ATGGTCAC-
1 ATGTGTAGTAC-TAT-GTGCATGCT-ACT
15387528 ATGTGTAGTACTATGTGCATGCTACT
1 ATGTGTAGTACTATGTGCATGCTACT
15387554 ATGTG
1 ATGTG
15387559 AACCGGTATC
Statistics
Matches: 42, Mismatches: 7, Indels: 14
0.67 0.11 0.22
Matches are distributed among these distances:
24 1 0.02
25 17 0.40
26 23 0.55
27 1 0.02
ACGTcount: A:0.23, C:0.15, G:0.28, T:0.34
Consensus pattern (26 bp):
ATGTGTAGTACTATGTGCATGCTACT
Found at i:15388920 original size:46 final size:43
Alignment explanation
Indices: 15388839--15388937 Score: 110
Period size: 46 Copynumber: 2.2 Consensus size: 43
15388829 TACTATGTGA
* *
15388839 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAAT-CC
* *
15388882 ACCGGATATCATTGATTACAAAGGGTGGTTACTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTACTATGTGCTGAATCC
15388928 ACCGTGTATC
1 ACCG-GTATC
15388938 TGTTATTATT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
43 5 0.11
44 11 0.23
45 2 0.04
46 26 0.55
47 3 0.06
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTACTATGTGCTGAATCC
Found at i:15392152 original size:22 final size:22
Alignment explanation
Indices: 15392112--15392177 Score: 64
Period size: 22 Copynumber: 3.0 Consensus size: 22
15392102 GTTTGTACAG
* *
15392112 GATTTGCACTACGAG-GCCTATT
1 GATTTGCACTATG-GTGCCTACT
*
15392134 GATTTGCACTATGGTGCCTGCT
1 GATTTGCACTATGGTGCCTACT
*
15392156 GATTCGCACT-TCGGTGCCTACT
1 GATTTGCACTAT-GGTGCCTACT
15392178 ACTCAGCACT
Statistics
Matches: 37, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 2 0.05
22 35 0.95
ACGTcount: A:0.17, C:0.26, G:0.24, T:0.33
Consensus pattern (22 bp):
GATTTGCACTATGGTGCCTACT
Found at i:15392186 original size:22 final size:23
Alignment explanation
Indices: 15392161--15392223 Score: 83
Period size: 22 Copynumber: 2.8 Consensus size: 23
15392151 CTGCTGATTC
*
15392161 GCACTTCGGTGCCTACTACT-CA
1 GCACTTCGGTGCCTACTACTAAA
* *
15392183 GCACTTCGGTGTCTACTATTAAA
1 GCACTTCGGTGCCTACTACTAAA
*
15392206 GCACTTTGGTGCCTACTA
1 GCACTTCGGTGCCTACTA
15392224 GTGTGGTGTA
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
22 18 0.51
23 17 0.49
ACGTcount: A:0.21, C:0.29, G:0.19, T:0.32
Consensus pattern (23 bp):
GCACTTCGGTGCCTACTACTAAA
Found at i:15403336 original size:10 final size:10
Alignment explanation
Indices: 15403304--15403352 Score: 50
Period size: 10 Copynumber: 5.1 Consensus size: 10
15403294 AAAACATAAT
15403304 TATTAAATTA
1 TATTAAATTA
*
15403314 TA-T--ATTT
1 TATTAAATTA
15403321 TATTAAATTA
1 TATTAAATTA
*
15403331 TATTAAAATA
1 TATTAAATTA
15403341 TGATTAAATTA
1 T-ATTAAATTA
15403352 T
1 T
15403353 TTATTTTTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 7
0.74 0.10 0.17
Matches are distributed among these distances:
7 5 0.16
8 1 0.03
9 1 0.03
10 15 0.48
11 9 0.29
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (10 bp):
TATTAAATTA
Found at i:15403597 original size:27 final size:27
Alignment explanation
Indices: 15403567--15403626 Score: 93
Period size: 27 Copynumber: 2.2 Consensus size: 27
15403557 TGAATTATTG
**
15403567 ATTACAACTCTATTCCATTACTTCTCT
1 ATTACAACTCTATTCCATTACAGCTCT
*
15403594 ATTACAGCTCTATTCCATTACAGCTCT
1 ATTACAACTCTATTCCATTACAGCTCT
15403621 ATTACA
1 ATTACA
15403627 TTACAATCAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.28, C:0.28, G:0.03, T:0.40
Consensus pattern (27 bp):
ATTACAACTCTATTCCATTACAGCTCT
Found at i:15403613 original size:16 final size:16
Alignment explanation
Indices: 15403594--15403644 Score: 68
Period size: 16 Copynumber: 3.2 Consensus size: 16
15403584 TTACTTCTCT
15403594 ATTACAGCTCTATTCC
1 ATTACAGCTCTATTCC
*
15403610 ATTACAGCTCTATTAC
1 ATTACAGCTCTATTCC
*
15403626 ATTACA-ATCATATTCC
1 ATTACAGCTC-TATTCC
15403642 ATT
1 ATT
15403645 TCAGTGAACC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
15 2 0.06
16 29 0.94
ACGTcount: A:0.31, C:0.25, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACAGCTCTATTCC
Found at i:15406511 original size:30 final size:30
Alignment explanation
Indices: 15406475--15406532 Score: 116
Period size: 30 Copynumber: 1.9 Consensus size: 30
15406465 GTATTGGTTA
15406475 GAGAATACACAACGAGTCTTCGATGAGATG
1 GAGAATACACAACGAGTCTTCGATGAGATG
15406505 GAGAATACACAACGAGTCTTCGATGAGA
1 GAGAATACACAACGAGTCTTCGATGAGA
15406533 GGGCTTGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.17, G:0.26, T:0.19
Consensus pattern (30 bp):
GAGAATACACAACGAGTCTTCGATGAGATG
Found at i:15428667 original size:31 final size:31
Alignment explanation
Indices: 15428632--15428711 Score: 90
Period size: 31 Copynumber: 2.5 Consensus size: 31
15428622 TTTGAGTCAA
* * *
15428632 GACTAAAATT-TCAAATTCGAAAAAGTACAAT
1 GACTAAAATTGACAAATTC-AAAAAATACAAG
* *
15428663 GACTAAAATTGACCAATTCAAAAAATATAAG
1 GACTAAAATTGACAAATTCAAAAAATACAAG
15428694 GACTAAAATTGATCAAAT
1 GACTAAAATTGA-CAAAT
15428712 AAAAGTATAG
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
31 31 0.76
32 10 0.24
ACGTcount: A:0.53, C:0.12, G:0.10, T:0.25
Consensus pattern (31 bp):
GACTAAAATTGACAAATTCAAAAAATACAAG
Found at i:15428725 original size:29 final size:30
Alignment explanation
Indices: 15428663--15428729 Score: 82
Period size: 29 Copynumber: 2.2 Consensus size: 30
15428653 AAAGTACAAT
*
15428663 GACTAAAATTGACCAATTCAAAAAATATAAG
1 GACTAAAATTGACCAAAT-AAAAAATATAAG
* * *
15428694 GACTAAAATTGATCAAAT-AAAAGTATAGG
1 GACTAAAATTGACCAAATAAAAAATATAAG
15428723 GACTAAA
1 GACTAAA
15428730 TCTATAAATT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 16 0.50
31 16 0.50
ACGTcount: A:0.54, C:0.10, G:0.13, T:0.22
Consensus pattern (30 bp):
GACTAAAATTGACCAAATAAAAAATATAAG
Found at i:15437375 original size:15 final size:16
Alignment explanation
Indices: 15437352--15437385 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
15437342 CTAAATATGA
*
15437352 AAATTTTGG-TTTTTT
1 AAATATTGGATTTTTT
15437367 AAATATTGGATTTTTT
1 AAATATTGGATTTTTT
15437383 AAA
1 AAA
15437386 GAAAAATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.32, C:0.00, G:0.12, T:0.56
Consensus pattern (16 bp):
AAATATTGGATTTTTT
Found at i:15438073 original size:56 final size:55
Alignment explanation
Indices: 15437973--15438126 Score: 202
Period size: 56 Copynumber: 2.8 Consensus size: 55
15437963 AGAAGATACG
* * * *
15437973 AGGAATCAAATTGCTAAAAGATAACAT-CATAATAATATCTTATAATATCTAATT
1 AGGAATCAAATTGCTAAAAGATAATATCCATAATAATATCCTATAACATCCAATT
** * *
15438027 AGGAATCAAATTGCTAGGAGAGAATATCCAATAATAATATCCTATAACATCCCATT
1 AGGAATCAAATTGCTAAAAGATAATATCC-ATAATAATATCCTATAACATCCAATT
*
15438083 AGGAATCAAATTCCTAAAAGATAATATCTCATAATAATATCCTA
1 AGGAATCAAATTGCTAAAAGATAATATC-CATAATAATATCCTA
15438127 ACATTCCCCC
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
54 23 0.27
55 1 0.01
56 60 0.71
57 1 0.01
ACGTcount: A:0.46, C:0.15, G:0.09, T:0.30
Consensus pattern (55 bp):
AGGAATCAAATTGCTAAAAGATAATATCCATAATAATATCCTATAACATCCAATT
Found at i:15441215 original size:56 final size:56
Alignment explanation
Indices: 15441155--15441311 Score: 242
Period size: 56 Copynumber: 2.8 Consensus size: 56
15441145 AGTAGTTACG
* * *
15441155 TAGGAATCAAATTGATAAAATATAATATCCCATAATAATATCCTATAATATCCCAT
1 TAGGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAACATCCCAT
* * *
15441211 TAGGAATCAAATTGCTAAGAGAGAATATCCCATAATAATATCCTATAACATCCCAT
1 TAGGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAACATCCCAT
**
15441267 TAGGAATCAAATTGCTAAAAAATAATATTGCATAATAATATCCTA
1 TAGGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTA
15441312 ACAGATAAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 91 1.00
ACGTcount: A:0.46, C:0.16, G:0.08, T:0.30
Consensus pattern (56 bp):
TAGGAATCAAATTGCTAAAAAATAATATCCCATAATAATATCCTATAACATCCCAT
Found at i:15442953 original size:7 final size:7
Alignment explanation
Indices: 15442941--15442980 Score: 55
Period size: 7 Copynumber: 5.9 Consensus size: 7
15442931 TAATTTAGTC
15442941 TTTTTAT
1 TTTTTAT
15442948 TTTTTAT
1 TTTTTAT
15442955 TTTTTAT
1 TTTTTAT
15442962 TTTTT-T
1 TTTTTAT
* *
15442968 TATTTAA
1 TTTTTAT
15442975 TTTTTA
1 TTTTTA
15442981 GATTTGAGAC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
6 5 0.17
7 24 0.83
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:15442964 original size:20 final size:20
Alignment explanation
Indices: 15442941--15442980 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
15442931 TAATTTAGTC
*
15442941 TTTTTATTT-TTTATTTTTTA
1 TTTTT-TTTATTTAATTTTTA
15442961 TTTTTTTTATTTAATTTTTA
1 TTTTTTTTATTTAATTTTTA
15442981 GATTTGAGAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 3 0.17
20 15 0.83
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.82
Consensus pattern (20 bp):
TTTTTTTTATTTAATTTTTA
Found at i:15446951 original size:20 final size:19
Alignment explanation
Indices: 15446926--15446994 Score: 68
Period size: 20 Copynumber: 3.5 Consensus size: 19
15446916 ATTTACCCTT
15446926 TTTATTTTTTTATTTCTTTA
1 TTTATTTTTTTATTT-TTTA
* *
15446946 TTTATTATTTAATTTTATTA
1 TTTATTTTTTTATTTT-TTA
*
15446966 -TTATTTTGATTTATTTTATA
1 TTTATTTT--TTTATTTTTTA
15446986 TTTATTTTT
1 TTTATTTTT
15446995 AGTATTTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
19 8 0.20
20 18 0.45
21 14 0.35
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (19 bp):
TTTATTTTTTTATTTTTTA
Found at i:15447000 original size:20 final size:20
Alignment explanation
Indices: 15446926--15447001 Score: 61
Period size: 21 Copynumber: 3.8 Consensus size: 20
15446916 ATTTACCCTT
*
15446926 TTTATTTTT-TTATTTCTTTA
1 TTTATTTTTATTATTT-TATA
15446946 TTTATTATTTA--ATTTTAT-
1 TTTATT-TTTATTATTTTATA
*
15446964 TATTATTTTGATTTATTTTATA
1 T-TTATTTTTA-TTATTTTATA
*
15446986 TTTATTTTTAGTATTT
1 TTTATTTTTATTATTT
15447002 ATTCTTATTC
Statistics
Matches: 45, Mismatches: 4, Indels: 14
0.71 0.06 0.22
Matches are distributed among these distances:
18 4 0.09
19 7 0.16
20 15 0.33
21 18 0.40
22 1 0.02
ACGTcount: A:0.22, C:0.01, G:0.03, T:0.74
Consensus pattern (20 bp):
TTTATTTTTATTATTTTATA
Found at i:15447003 original size:13 final size:12
Alignment explanation
Indices: 15446942--15447004 Score: 55
Period size: 11 Copynumber: 5.5 Consensus size: 12
15446932 TTTTTATTTC
*
15446942 TTTA-TTTATTA
1 TTTATTTTAGTA
*
15446953 TTTAATTTTATTA
1 TTT-ATTTTAGTA
15446966 -TTATTTT-G-A
1 TTTATTTTAGTA
15446975 TTTATTTTA-TA
1 TTTATTTTAGTA
15446986 TTTATTTTTAGTA
1 TTTA-TTTTAGTA
15446999 TTTATT
1 TTTATT
15447005 CTTATTCTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
9 1 0.02
10 7 0.16
11 13 0.30
12 10 0.23
13 13 0.30
ACGTcount: A:0.25, C:0.00, G:0.03, T:0.71
Consensus pattern (12 bp):
TTTATTTTAGTA
Found at i:15447003 original size:40 final size:39
Alignment explanation
Indices: 15446927--15447010 Score: 100
Period size: 40 Copynumber: 2.1 Consensus size: 39
15446917 TTTACCCTTT
*
15446927 TTATTTTTTTATTTCTTTATTTATTATTTAATTTTATTA
1 TTATTTTTTTATTTCTATATTTATTATTTAATTTTATTA
* *
15446966 TTATTTTGATTTATTT-TATATTTATT-TTTAGTATTTATTC
1 TTATTTT--TTTATTTCTATATTTATTATTTAAT-TTTATTA
15447006 TTATT
1 TTATT
15447011 CTTATTCTTA
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
39 12 0.31
40 20 0.51
41 7 0.18
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.73
Consensus pattern (39 bp):
TTATTTTTTTATTTCTATATTTATTATTTAATTTTATTA
Found at i:15447017 original size:12 final size:12
Alignment explanation
Indices: 15447000--15447046 Score: 94
Period size: 12 Copynumber: 3.9 Consensus size: 12
15446990 TTTTTAGTAT
15447000 TTATTCTTATTC
1 TTATTCTTATTC
15447012 TTATTCTTATTC
1 TTATTCTTATTC
15447024 TTATTCTTATTC
1 TTATTCTTATTC
15447036 TTATTCTTATT
1 TTATTCTTATT
15447047 ATTTGTACTA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (12 bp):
TTATTCTTATTC
Found at i:15447023 original size:18 final size:18
Alignment explanation
Indices: 15447000--15447046 Score: 94
Period size: 18 Copynumber: 2.6 Consensus size: 18
15446990 TTTTTAGTAT
15447000 TTATTCTTATTCTTATTC
1 TTATTCTTATTCTTATTC
15447018 TTATTCTTATTCTTATTC
1 TTATTCTTATTCTTATTC
15447036 TTATTCTTATT
1 TTATTCTTATT
15447047 ATTTGTACTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.17, C:0.15, G:0.00, T:0.68
Consensus pattern (18 bp):
TTATTCTTATTCTTATTC
Found at i:15449709 original size:42 final size:42
Alignment explanation
Indices: 15449648--15449769 Score: 127
Period size: 42 Copynumber: 2.9 Consensus size: 42
15449638 AAATCTCGAA
* * * *
15449648 GGTTGCACAGAAGCACATAAGTGCTAAATAGAAACCCGTAAG
1 GGTTGAACAGAAGCTCATAAGAGCTAAATAGAAACCCATAAG
* * ** *
15449690 GGTTGAACGGAAGCTCATAAGAGCTGAACGGAAACCTATAAG
1 GGTTGAACAGAAGCTCATAAGAGCTAAATAGAAACCCATAAG
* * * *
15449732 GGTTAAACTGAAGCTCAAAAGAGCTAAATTGAAACCCA
1 GGTTGAACAGAAGCTCATAAGAGCTAAATAGAAACCCA
15449770 GAAAGGTTAA
Statistics
Matches: 64, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 64 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (42 bp):
GGTTGAACAGAAGCTCATAAGAGCTAAATAGAAACCCATAAG
Found at i:15449764 original size:21 final size:21
Alignment explanation
Indices: 15449735--15449790 Score: 60
Period size: 21 Copynumber: 2.7 Consensus size: 21
15449725 CTATAAGGGT
* *
15449735 TAAACTGAAGCTCA-AAAGAGC
1 TAAATTGAAACTCAGAAAG-GC
* *
15449756 TAAATTGAAACCCAGAAAGGT
1 TAAATTGAAACTCAGAAAGGC
15449777 TAAATTGAAACTCA
1 TAAATTGAAACTCA
15449791 TATAAGTTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
21 25 0.86
22 4 0.14
ACGTcount: A:0.48, C:0.16, G:0.16, T:0.20
Consensus pattern (21 bp):
TAAATTGAAACTCAGAAAGGC
Found at i:15449778 original size:42 final size:42
Alignment explanation
Indices: 15449670--15449790 Score: 118
Period size: 42 Copynumber: 2.9 Consensus size: 42
15449660 GCACATAAGT
* * *
15449670 GCTAAATAGAAACCC-GTAAGGGTTGAACGGAAGCTCATAAGA
1 GCTAAATAGAAACCCAG-AAGGGTTAAACTGAAGCTCAAAAGA
* ** * *
15449712 GCTGAACGGAAACCTATAAGGGTTAAACTGAAGCTCAAAAGA
1 GCTAAATAGAAACCCAGAAGGGTTAAACTGAAGCTCAAAAGA
* * * *
15449754 GCTAAATTGAAACCCAGAAAGGTTAAATTGAAACTCA
1 GCTAAATAGAAACCCAGAAGGGTTAAACTGAAGCTCA
15449791 TATAAGTTAA
Statistics
Matches: 62, Mismatches: 16, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
42 62 1.00
ACGTcount: A:0.43, C:0.17, G:0.22, T:0.18
Consensus pattern (42 bp):
GCTAAATAGAAACCCAGAAGGGTTAAACTGAAGCTCAAAAGA
Found at i:15461937 original size:4 final size:4
Alignment explanation
Indices: 15461928--15461960 Score: 66
Period size: 4 Copynumber: 8.2 Consensus size: 4
15461918 CTAATAGAAA
15461928 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC A
15461961 GTAGAAGCTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.52, C:0.24, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:15463825 original size:88 final size:90
Alignment explanation
Indices: 15463700--15463873 Score: 219
Period size: 88 Copynumber: 2.0 Consensus size: 90
15463690 TAATTTTCCA
* * * * * *
15463700 TTTTTCTTCACTCAATTAAGCATTTGAACTTTTAAAATTTATC-AAAAGAGCTCTCAAACTTCTT
1 TTTTTCTTCACTCAATTAAGCACTTAAACTTTCAAAATGTATCAAAAAGA-CCCTCAAAATTCTT
*
15463764 CAAAA-AAAAGCAATTAAGCCCTTTC
65 CAAAACAAAAACAATTAAGCCCTTTC
* * * *
15463789 TTTTT-TTCACTCAATTAGGTACTTAAAGTTTCAAAATGTATCAAAAAGACCCTCAAAATTTTTC
1 TTTTTCTTCACTCAATTAAGCACTTAAACTTTCAAAATGTATCAAAAAGACCCTCAAAATTCTTC
15463853 AAAACAAAAACAATTAAGCCC
66 AAAACAAAAACAATTAAGCCC
15463874 ATGCTCTTAT
Statistics
Matches: 72, Mismatches: 11, Indels: 4
0.83 0.13 0.05
Matches are distributed among these distances:
88 46 0.64
89 26 0.36
ACGTcount: A:0.40, C:0.20, G:0.07, T:0.34
Consensus pattern (90 bp):
TTTTTCTTCACTCAATTAAGCACTTAAACTTTCAAAATGTATCAAAAAGACCCTCAAAATTCTTC
AAAACAAAAACAATTAAGCCCTTTC
Found at i:15464116 original size:10 final size:10
Alignment explanation
Indices: 15464101--15464176 Score: 50
Period size: 10 Copynumber: 7.6 Consensus size: 10
15464091 NNNNNNNNNN
15464101 ATATTTTATA
1 ATATTTTATA
15464111 ATATTTT-TA
1 ATATTTTATA
15464120 CGAT-TTTTATA
1 --ATATTTTATA
* *
15464131 AAATTTTACA
1 ATATTTTATA
*
15464141 ATTTTTTAT-
1 ATATTTTATA
*
15464150 ATTTTTTAGTA
1 ATATTTTA-TA
* *
15464161 AAATTTAATA
1 ATATTTTATA
15464171 ATATTT
1 ATATTT
15464177 ATAGTTTTTA
Statistics
Matches: 51, Mismatches: 9, Indels: 12
0.71 0.12 0.17
Matches are distributed among these distances:
9 11 0.22
10 31 0.61
11 9 0.18
ACGTcount: A:0.37, C:0.03, G:0.03, T:0.58
Consensus pattern (10 bp):
ATATTTTATA
Found at i:15464129 original size:20 final size:20
Alignment explanation
Indices: 15464104--15464155 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 20
15464094 NNNNNNNATA
*
15464104 TTTTATAATATTTTTACGAT
1 TTTTATAATATTTTTACAAT
*
15464124 TTTTATAA-AATTTTACAAT
1 TTTTATAATATTTTTACAAT
15464143 TTTT-T-ATATTTTT
1 TTTTATAATATTTTT
15464156 TAGTAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 1 0.04
18 6 0.21
19 13 0.46
20 8 0.29
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (20 bp):
TTTTATAATATTTTTACAAT
Found at i:15464177 original size:29 final size:29
Alignment explanation
Indices: 15464123--15464187 Score: 78
Period size: 29 Copynumber: 2.2 Consensus size: 29
15464113 ATTTTTACGA
* * *
15464123 TTTTTATAAAATTTTACAATTTTTTATAT
1 TTTTTATAAAATTTAACAATTATTTATAG
*
15464152 TTTTTAGTAAAATTTAATAA-TATTTATAG
1 TTTTTA-TAAAATTTAACAATTATTTATAG
15464181 TTTTTAT
1 TTTTTAT
15464188 TGACTTTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
28 1 0.03
29 19 0.61
30 11 0.35
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (29 bp):
TTTTTATAAAATTTAACAATTATTTATAG
Found at i:15464185 original size:30 final size:29
Alignment explanation
Indices: 15464103--15464185 Score: 87
Period size: 30 Copynumber: 2.8 Consensus size: 29
15464093 NNNNNNNNAT
* *
15464103 ATTTTATAATATTTTTACGATTTTTATAAA
1 ATTTTATAATATTTATA-GTTTTTTATAAA
* *
15464133 ATTTTACAATTTTTTATA-TTTTTTAGTAAA
1 ATTTTATAA-TATTTATAGTTTTTTA-TAAA
*
15464163 ATTTAATAATATTTATAGTTTTT
1 ATTTTATAATATTTATAGTTTTT
15464186 ATTGACTTTA
Statistics
Matches: 43, Mismatches: 7, Indels: 6
0.77 0.12 0.11
Matches are distributed among these distances:
29 13 0.30
30 24 0.56
31 6 0.14
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (29 bp):
ATTTTATAATATTTATAGTTTTTTATAAA
Found at i:15464392 original size:88 final size:87
Alignment explanation
Indices: 15464233--15464419 Score: 209
Period size: 88 Copynumber: 2.1 Consensus size: 87
15464223 TGGCTTAATT
* * * *
15464233 TTATTTTTTTT-AAGTTTGAGGGTCATTTTGATGCATTTTAAAAGTTTAAGTACCTAATTGAGT-
1 TTATTTTTTTTAAAGTTTGAGGGCCATTTTGATGCATTTTAAAAGTTTAAGTACCTAAATAAATA
** *
15464296 GTACAAAAAAGTAGGGACTTAA
66 CAAAAAAAAAGTAGGGACTTAA
* * * *
15464318 TTGATTTTTTTTAAAGATTTGAGGGCCTTTTTGCTGTATTTTAAAATTTTAAGTA-CTCAAATAA
1 TT-ATTTTTTTTAAAG-TTTGAGGGCCATTTTGATGCATTTTAAAAGTTTAAGTACCT-AAATAA
*
15464382 ATACAAAAAAAAATTAGGGACTTAA
63 ATACAAAAAAAAAGTAGGGACTTAA
*
15464407 TTTTTTTTTTTAA
1 TTATTTTTTTTAA
15464420 TTTAAAGGGT
Statistics
Matches: 84, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
85 2 0.02
86 9 0.11
87 5 0.06
88 48 0.57
89 20 0.24
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (87 bp):
TTATTTTTTTTAAAGTTTGAGGGCCATTTTGATGCATTTTAAAAGTTTAAGTACCTAAATAAATA
CAAAAAAAAAGTAGGGACTTAA
Found at i:15465996 original size:16 final size:16
Alignment explanation
Indices: 15465975--15466017 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
15465965 ATATATGTAC
*
15465975 AACGTATGTAAATTAT
1 AACGTATGTAAAGTAT
*
15465991 AACGTATATAAAGTAT
1 AACGTATGTAAAGTAT
*
15466007 AGAGGTATGTA
1 A-ACGTATGTA
15466018 TATATATAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.44, C:0.05, G:0.19, T:0.33
Consensus pattern (16 bp):
AACGTATGTAAAGTAT
Found at i:15466774 original size:10 final size:11
Alignment explanation
Indices: 15466749--15466775 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15466739 TTTCGAAAGA
15466749 AAAAAATAAAT
1 AAAAAATAAAT
15466760 AAAAAATAAAT
1 AAAAAATAAAT
15466771 AAAAA
1 AAAAA
15466776 CGAAAACAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (11 bp):
AAAAAATAAAT
Found at i:15467185 original size:6 final size:6
Alignment explanation
Indices: 15467138--15467213 Score: 52
Period size: 6 Copynumber: 12.7 Consensus size: 6
15467128 CTGATAGAAA
* *
15467138 TGGGTT TGGGGTAAT TGGGTTT TGAGTT TAGGTT TGGG-- TGGGTT TGGGTT
1 TGGGTT T-GGGT--T TGGG-TT TGGGTT TGGGTT TGGGTT TGGGTT TGGGTT
* *
15467188 TGGGTT TAGGTT TAGG-- TGGGTT TGGG
1 TGGGTT TGGGTT TGGGTT TGGGTT TGGG
15467214 CCCGGGCAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 16
0.72 0.08 0.21
Matches are distributed among these distances:
4 7 0.12
6 35 0.62
7 8 0.14
8 3 0.05
9 3 0.05
ACGTcount: A:0.08, C:0.00, G:0.47, T:0.45
Consensus pattern (6 bp):
TGGGTT
Found at i:15467189 original size:28 final size:29
Alignment explanation
Indices: 15467152--15467213 Score: 99
Period size: 28 Copynumber: 2.2 Consensus size: 29
15467142 TTTGGGGTAA
*
15467152 TTGGGTTTTGAGTTTAGGTTTGGGTGGGT
1 TTGGGTTTTGAGTTTAGGTTTAGGTGGGT
*
15467181 TTGGG-TTTGGGTTTAGGTTTAGGTGGGT
1 TTGGGTTTTGAGTTTAGGTTTAGGTGGGT
15467209 TTGGG
1 TTGGG
15467214 CCCGGGCAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
28 26 0.84
29 5 0.16
ACGTcount: A:0.06, C:0.00, G:0.47, T:0.47
Consensus pattern (29 bp):
TTGGGTTTTGAGTTTAGGTTTAGGTGGGT
Found at i:15467263 original size:15 final size:15
Alignment explanation
Indices: 15467243--15467271 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
15467233 GTAATTGAGT
15467243 TTTGGGTTTAGGTGA
1 TTTGGGTTTAGGTGA
15467258 TTTGGGTTTAGGTG
1 TTTGGGTTTAGGTG
15467272 GTATGGGCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.00, G:0.41, T:0.48
Consensus pattern (15 bp):
TTTGGGTTTAGGTGA
Found at i:15467278 original size:15 final size:15
Alignment explanation
Indices: 15467245--15467278 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15467235 AATTGAGTTT
*
15467245 TGGGTTTAGGTGATT
1 TGGGTTTAGGTGATA
*
15467260 TGGGTTTAGGTGGTA
1 TGGGTTTAGGTGATA
15467275 TGGG
1 TGGG
15467279 CCCGGGTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.12, C:0.00, G:0.47, T:0.41
Consensus pattern (15 bp):
TGGGTTTAGGTGATA
Found at i:15467474 original size:24 final size:24
Alignment explanation
Indices: 15467447--15467493 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
15467437 TATAGAGTAA
* *
15467447 CTCTGTCTTTTGACACGTTTTTTT
1 CTCTGTCTTTTAACACGCTTTTTT
15467471 CTCTGTCTTTTAACACGCTTTTT
1 CTCTGTCTTTTAACACGCTTTTT
15467494 GCTTGTTAGC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.11, C:0.23, G:0.11, T:0.55
Consensus pattern (24 bp):
CTCTGTCTTTTAACACGCTTTTTT
Found at i:15472384 original size:43 final size:43
Alignment explanation
Indices: 15472336--15472418 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
15472326 TGTGATTGAT
*
15472336 TTGAAATGGAAAAGATGAGAAATTAATATGAGATGAGAAAATA
1 TTGAAATGGAAAAGATGAGAAATGAATATGAGATGAGAAAATA
* * * * *
15472379 TTGAAATGGCAAATATGTGAAATGATTATGATATGAGAAA
1 TTGAAATGGAAAAGATGAGAAATGAATATGAGATGAGAAA
15472419 TGAGATATGA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.49, C:0.01, G:0.23, T:0.27
Consensus pattern (43 bp):
TTGAAATGGAAAAGATGAGAAATGAATATGAGATGAGAAAATA
Found at i:15474230 original size:23 final size:25
Alignment explanation
Indices: 15474175--15474223 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
15474165 CAAACATGTA
* *
15474175 AACGGGAAGCTCTTTCGAGCCATAT
1 AACGGGAAGCTCATCCGAGCCATAT
15474200 AACGGGAAGCTCATCCGAGCCATA
1 AACGGGAAGCTCATCCGAGCCATA
15474224 ATCGGAAAGT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.27, G:0.24, T:0.18
Consensus pattern (25 bp):
AACGGGAAGCTCATCCGAGCCATAT
Found at i:15474251 original size:24 final size:25
Alignment explanation
Indices: 15474190--15474281 Score: 68
Period size: 24 Copynumber: 3.7 Consensus size: 25
15474180 GAAGCTCTTT
* *
15474190 CGAGCCATATAA-CGGGAAGC-TCATC
1 CGAGCCA-ATAATCGGGAAACTTCA-G
*
15474215 CGAGCC-ATAATC-GGAAAGTTCAAG
1 CGAGCCAATAATCGGGAAACTTC-AG
15474239 CGAGCCAAT-ATCGGGAAACTTCAG
1 CGAGCCAATAATCGGGAAACTTCAG
* *
15474263 AGAGCCAATTAATTGGGAA
1 CGAGCCAA-TAATCGGGAA
15474282 GATCTTGAAA
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
23 8 0.15
24 21 0.39
25 18 0.33
26 7 0.13
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (25 bp):
CGAGCCAATAATCGGGAAACTTCAG
Found at i:15476432 original size:49 final size:49
Alignment explanation
Indices: 15476375--15476475 Score: 148
Period size: 49 Copynumber: 2.1 Consensus size: 49
15476365 TCAATAAGGG
* * *
15476375 ATAAATAGTGATAAGAATGTAAACAGTGGAAGACTAGGTTTAGCAATGT
1 ATAAATAGTGATAAGAATGTAAACAGTAGAAGACCAAGTTTAGCAATGT
* * *
15476424 ATAAATAGTGATAAGAGTGTAGACAGTAGAAGACCAAGTTTAGCATTGT
1 ATAAATAGTGATAAGAATGTAAACAGTAGAAGACCAAGTTTAGCAATGT
15476473 ATA
1 ATA
15476476 GCCTAGATCA
Statistics
Matches: 46, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.43, C:0.07, G:0.24, T:0.27
Consensus pattern (49 bp):
ATAAATAGTGATAAGAATGTAAACAGTAGAAGACCAAGTTTAGCAATGT
Found at i:15499025 original size:151 final size:151
Alignment explanation
Indices: 15498751--15499052 Score: 586
Period size: 151 Copynumber: 2.0 Consensus size: 151
15498741 CTTGTGTTGC
*
15498751 AGCAGGTGTGTAATGTGATCACCCAAATTTCTAACATAATGTAACTTGATCAGGGTCTTCGTTTT
1 AGCAGGTGTGTAATGTGATCACCCAAATTCCTAACATAATGTAACTTGATCAGGGTCTTCGTTTT
*
15498816 TTCTAATTACATAACTTTAAATCGTAATTTGTAGGTGTAAGTCAGGACCATCTGAAGCTAGACTT
66 TTCTAATTACATAACTTTAAATCGTAATTTGTAGGTGTAAGTCAGGACCATCCGAAGCTAGACTT
15498881 CAACTTGATATCTAACATAAT
131 CAACTTGATATCTAACATAAT
15498902 AGCAGGTGTGTAATGTGATCACCCAAATTCCTAACATAATGTAACTTGATCAGGGTCTTCGTTTT
1 AGCAGGTGTGTAATGTGATCACCCAAATTCCTAACATAATGTAACTTGATCAGGGTCTTCGTTTT
15498967 TTCTAATTACATAACTTTAAATCGTAATTTGTAGGTGTAAGTCAGGACCATCCGAAGCTAGACTT
66 TTCTAATTACATAACTTTAAATCGTAATTTGTAGGTGTAAGTCAGGACCATCCGAAGCTAGACTT
15499032 CAACTTGATATCTAACATAAT
131 CAACTTGATATCTAACATAAT
15499053 TCTACCTATG
Statistics
Matches: 149, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
151 149 1.00
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.34
Consensus pattern (151 bp):
AGCAGGTGTGTAATGTGATCACCCAAATTCCTAACATAATGTAACTTGATCAGGGTCTTCGTTTT
TTCTAATTACATAACTTTAAATCGTAATTTGTAGGTGTAAGTCAGGACCATCCGAAGCTAGACTT
CAACTTGATATCTAACATAAT
Done.