Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 48 of 163
Found at i:15501891 original size:17 final size:16
Alignment explanation
Indices: 15501866--15501900 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
15501856 AAGTATAAAA
*
15501866 AAATTTAAAAAATAAG
1 AAATTTAAAAAAGAAG
15501882 AAATTATAAAAAAGAAG
1 AAATT-TAAAAAAGAAG
15501899 AA
1 AA
15501901 GAAGAAAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 5 0.29
17 12 0.71
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (16 bp):
AAATTTAAAAAAGAAG
Found at i:15502809 original size:18 final size:18
Alignment explanation
Indices: 15502786--15502848 Score: 83
Period size: 18 Copynumber: 3.5 Consensus size: 18
15502776 CATGTTGTAA
15502786 TGAAAAAGA-AAAAGAGAT
1 TGAAAAAGAGAAAAGA-AT
*
15502804 TGAAAAAGAGAAAAAAAT
1 TGAAAAAGAGAAAAGAAT
*
15502822 TGAAAGAGAGAAAAGAAT
1 TGAAAAAGAGAAAAGAAT
*
15502840 CGAAAAAGA
1 TGAAAAAGA
15502849 TTATGAAAAA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
18 34 0.87
19 5 0.13
ACGTcount: A:0.67, C:0.02, G:0.22, T:0.10
Consensus pattern (18 bp):
TGAAAAAGAGAAAAGAAT
Found at i:15502858 original size:12 final size:12
Alignment explanation
Indices: 15502841--15502886 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
15502831 GAAAAGAATC
**
15502841 GAAAAAGATTAT
1 GAAAAAGAAAAT
15502853 GAAAAAGAAAAT
1 GAAAAAGAAAAT
*
15502865 GAAAAAGAAAGT
1 GAAAAAGAAAAT
*
15502877 GAAAACGAAA
1 GAAAAAGAAA
15502887 GTGAGAGTGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 30 1.00
ACGTcount: A:0.67, C:0.02, G:0.20, T:0.11
Consensus pattern (12 bp):
GAAAAAGAAAAT
Found at i:15502874 original size:18 final size:18
Alignment explanation
Indices: 15502784--15502886 Score: 59
Period size: 18 Copynumber: 5.7 Consensus size: 18
15502774 CTCATGTTGT
*
15502784 AATGAAAAAGAAAAAGAG
1 AATGAAAAAGAAAAAGAA
*
15502802 ATTGAAAAAGAGAAAA-AA
1 AATGAAAAAGA-AAAAGAA
* *
15502820 ATTGAAAGAGAGAAAAG--
1 AATGAAAAAGA-AAAAGAA
** *
15502837 AATCGAAAAAGATTATGAA
1 AAT-GAAAAAGAAAAAGAA
* *
15502856 AAAGAAAATGAAAAAGAA
1 AATGAAAAAGAAAAAGAA
* *
15502874 AGTGAAAACGAAA
1 AATGAAAAAGAAA
15502887 GTGAGAGTGA
Statistics
Matches: 64, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
17 4 0.06
18 54 0.84
19 6 0.09
ACGTcount: A:0.67, C:0.02, G:0.20, T:0.11
Consensus pattern (18 bp):
AATGAAAAAGAAAAAGAA
Found at i:15502887 original size:12 final size:12
Alignment explanation
Indices: 15502852--15502890 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
15502842 AAAAAGATTA
*
15502852 TGAAAAAGAAAA
1 TGAAAAAGAAAG
15502864 TGAAAAAGAAAG
1 TGAAAAAGAAAG
*
15502876 TGAAAACGAAAG
1 TGAAAAAGAAAG
15502888 TGA
1 TGA
15502891 GAGTGAGAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.64, C:0.03, G:0.23, T:0.10
Consensus pattern (12 bp):
TGAAAAAGAAAG
Found at i:15507552 original size:24 final size:24
Alignment explanation
Indices: 15507503--15507565 Score: 74
Period size: 24 Copynumber: 2.6 Consensus size: 24
15507493 ATCTTCGTAC
* *
15507503 TCATCTTCATCTCCACTATCGTCT
1 TCATCTTCATCTCCACCATCGGCT
*
15507527 TCATCTTCATCTCCACCATTGGCT
1 TCATCTTCATCTCCACCATCGGCT
*
15507551 TCGA-CTTCGTCTCCA
1 TC-ATCTTCATCTCCA
15507566 TCCCCTTCAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
24 33 0.97
25 1 0.03
ACGTcount: A:0.16, C:0.38, G:0.08, T:0.38
Consensus pattern (24 bp):
TCATCTTCATCTCCACCATCGGCT
Found at i:15509300 original size:20 final size:20
Alignment explanation
Indices: 15509275--15509385 Score: 204
Period size: 20 Copynumber: 5.5 Consensus size: 20
15509265 TCGATAAGGG
15509275 TTTTTTTTTTTTTTTAAAGT
1 TTTTTTTTTTTTTTTAAAGT
15509295 TTTTTTTTTTTTTTTAAAGT
1 TTTTTTTTTTTTTTTAAAGT
15509315 TTTTTTTTTTTTTTTAAAGT
1 TTTTTTTTTTTTTTTAAAGT
15509335 TTTTTTTTTTTTTTTAAAGT
1 TTTTTTTTTTTTTTTAAAGT
15509355 TTTTTTTTTTTTTTTAAAGT
1 TTTTTTTTTTTTTTTAAAGT
15509375 TGTTTATTTTT
1 T-TTT-TTTTT
15509386 GTTTGTGACC
Statistics
Matches: 89, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
20 81 0.91
21 3 0.03
22 5 0.06
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.80
Consensus pattern (20 bp):
TTTTTTTTTTTTTTTAAAGT
Found at i:15514427 original size:30 final size:30
Alignment explanation
Indices: 15514393--15514488 Score: 156
Period size: 30 Copynumber: 3.2 Consensus size: 30
15514383 CCTCCACCTC
*
15514393 CTGGTGCTCCTCCACCACCTCCTCCGAAAG
1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG
* *
15514423 CTGGTGCTCCTCCACCACCTCCTTCTAAAG
1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG
*
15514453 CTGGCGCTCCTCCACCACCTCCTCCAAAAG
1 CTGGTGCTCCTCCACCACCTCCTCCAAAAG
15514483 CTGGTG
1 CTGGTG
15514489 GTGGTCCTAG
Statistics
Matches: 60, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 60 1.00
ACGTcount: A:0.17, C:0.45, G:0.17, T:0.22
Consensus pattern (30 bp):
CTGGTGCTCCTCCACCACCTCCTCCAAAAG
Found at i:15522090 original size:55 final size:56
Alignment explanation
Indices: 15521997--15522111 Score: 189
Period size: 55 Copynumber: 2.1 Consensus size: 56
15521987 TAAATTTTAT
* *
15521997 AAATTAAAATTATAAATATTCATATATCTAAATTTTAACATGAATACATATTTTTC
1 AAATTAAAATTATAAATAATCAAATATCTAAATTTTAACATGAATACATATTTTTC
15522053 AAATTAAAATTA-AAATAATCAAA-ATACTAAATTTTAACATGAATACATATTTTTC
1 AAATTAAAATTATAAATAATCAAATAT-CTAAATTTTAACATGAATACATATTTTTC
15522108 AAAT
1 AAAT
15522112 AATAATTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
54 2 0.04
55 42 0.75
56 12 0.21
ACGTcount: A:0.50, C:0.09, G:0.02, T:0.39
Consensus pattern (56 bp):
AAATTAAAATTATAAATAATCAAATATCTAAATTTTAACATGAATACATATTTTTC
Found at i:15529253 original size:2 final size:2
Alignment explanation
Indices: 15529246--15529276 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
15529236 TTTAAAAAGA
*
15529246 AT AT AT AT CT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
15529277 ACAATCCAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:15530783 original size:2 final size:2
Alignment explanation
Indices: 15530771--15530800 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
15530761 TTAGATCAAG
*
15530771 AT AT TT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
15530801 CATTGTACTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
AT
Found at i:15531206 original size:14 final size:13
Alignment explanation
Indices: 15531184--15531223 Score: 62
Period size: 14 Copynumber: 3.0 Consensus size: 13
15531174 ATTTTTAAAA
15531184 ATTTTAATAAATT
1 ATTTTAATAAATT
15531197 ATTATTAATAAATT
1 ATT-TTAATAAATT
*
15531211 ATTTTAAAAAATT
1 ATTTTAATAAATT
15531224 GGGTTAAATT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
13 12 0.48
14 13 0.52
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (13 bp):
ATTTTAATAAATT
Found at i:15533587 original size:826 final size:827
Alignment explanation
Indices: 15531985--15533637 Score: 3299
Period size: 826 Copynumber: 2.0 Consensus size: 827
15531975 ATATTTACTT
15531985 ATTAATATATAAATTATAATAATTTATTATAATATTATAGAAATTGAGACTAAAAATTATTAAAG
1 ATTAATATATAAATTATAATAATTTATTATAATATTATAGAAATTGAGACTAAAAATTATTAAAG
15532050 GAATTAAACTTGTTAAAAAAAAACAAATTTTATAACAAGGATAATTGAGTAACATGTGATTCTAC
66 GAATTAAACTTGTTAAAAAAAAACAAATTTTATAACAAGGATAATTGAGTAACATGTGATTCTAC
15532115 ATAATCTTATATTCCGTCAACTAAACACTTGAATCTTGCTTCCCAACCAAATGAACCAAACAATG
131 ATAATCTTATATTCCGTCAACTAAACACTTGAATCTTGCTTCCCAACCAAATGAACCAAACAATG
15532180 TGATCTTACATTACACCCATAATCTTACATTCTCGTAATTTTATTACGGAATGTAATCTAAGATT
196 TGATCTTACATTACACCCATAATCTTACATTCTCGTAATTTTATTACGGAATGTAATCTAAGATT
15532245 CGGCAAACCAAACGTCCCCTAAAAAGTTACCAGTGTTTTCTTCAATGACCAAAATGTGTAATTTT
261 CGGCAAACCAAACGTCCCCTAAAAAGTTACCAGTGTTTTCTTCAATGACCAAAATGTGTAATTTT
15532310 GTCAAATATAGATACCACATTGGACCAAAAAAATAACATATATATCACATTTAAAAAAGCGTCAA
326 GTCAAATATAGATACCACATTGGACCAAAAAAATAACATATATATCACATTTAAAAAAGCGTCAA
15532375 ACTCAAGTACCAACTTATGCATTAAGCCATAGTTGAAATATAGAGATAATTTATACTAAATTATG
391 ACTCAAGTACCAACTTATGCATTAAGCCATAGTTGAAATATAGAGATAATTTATACTAAATTATG
15532440 GGACACCCACAATGTGAACGAACATTTTATATAACCAATTTTAAAAATTTTGATATAACAACCAA
456 GGACACCCACAATGTGAACGAACATTTTATATAACCAATTTTAAAAATTTTGATATAACAACCAA
15532505 ATATAACTTTAATTGACATGGTAAAATTGAATTATTAAATAATGTTTTAGATTTGAATCGTGCAA
521 ATATAACTTTAATTGACATGGTAAAATTGAATTATTAAATAATGTTTTAGATTTGAATCGTGCAA
15532570 ATATTTTTTTTCTAAATTTTATATGAAAAAAATAAAATTACTCTAAAATTAATATCTATTACTTA
586 ATATTTTTTTTCTAAATTTTATATGAAAAAAATAAAATTACTCTAAAATTAATATCTATTACTTA
15532635 ATAAAGATAAAAGGTAAATTCTTCGTTGAGTTGAGATCCAATTGAAGTTAGACACCGACTCAATA
651 ATAAAGATAAAAGGTAAATTCTTCGTTGAGTTGAGATCCAATTGAAGTTAGACACCGACTCAATA
15532700 ATAATTGTAATAATCTTAAATCTTAGTATAAATGAGCTACAATGTCCAAACGTAAGACTTGAATT
716 ATAATTGTAATAATCTTAAATCTTAGTATAAATGAGCTACAATGTCCAAACGTAAGACTTGAATT
15532765 TTCATGAATCATAATCAAATAATCTTAAAACTATACTTGAAATTTGA
781 TTCATGAATCATAATCAAATAATCTTAAAACTATACTTGAAATTTGA
15532812 ATTAATATAT-AATTATAATAATTTATTATAATATTATAGAAATTGAGACTAAAAATTATTAAAG
1 ATTAATATATAAATTATAATAATTTATTATAATATTATAGAAATTGAGACTAAAAATTATTAAAG
15532876 GAATTAAACTTGTTAAAAAAAAACAAATTTTATAACAAGGATAATTGAGTAACATGTGATTCTAC
66 GAATTAAACTTGTTAAAAAAAAACAAATTTTATAACAAGGATAATTGAGTAACATGTGATTCTAC
15532941 ATAATCTTATATTCCGTCAACTAAACACTTGAATCTTGCTTCCCAACCAAATGAACCAAACAATG
131 ATAATCTTATATTCCGTCAACTAAACACTTGAATCTTGCTTCCCAACCAAATGAACCAAACAATG
15533006 TGATCTTACATTACACCCATAATCTTACATTCTCGTAATTTTATTACGGAATGTAATCTAAGATT
196 TGATCTTACATTACACCCATAATCTTACATTCTCGTAATTTTATTACGGAATGTAATCTAAGATT
15533071 CGGCAAACCAAACGTCCCCTAAAAAGTTACCAGTGTTTTCTTCAATGACCAAAATGTGTAATTTT
261 CGGCAAACCAAACGTCCCCTAAAAAGTTACCAGTGTTTTCTTCAATGACCAAAATGTGTAATTTT
15533136 GTCAAATATAGATACCACATTGGACCAAAAAAATAACATATATATCACATTTAAAAAAGCGTCAA
326 GTCAAATATAGATACCACATTGGACCAAAAAAATAACATATATATCACATTTAAAAAAGCGTCAA
15533201 ACTCAAGTACCAACTTATGCATTAAGCCATAGTTGAAATATAGAGATAATTTATACTAAATTATG
391 ACTCAAGTACCAACTTATGCATTAAGCCATAGTTGAAATATAGAGATAATTTATACTAAATTATG
15533266 GGACACCCACAATGTGAACGAACATTTTATATAACCAATTTTAAAAATTTTGATATAACAACCAA
456 GGACACCCACAATGTGAACGAACATTTTATATAACCAATTTTAAAAATTTTGATATAACAACCAA
15533331 ATATAACTTTAATTGACATGGTAAAATTGAATTATTAAATAATGTTTTAGATTTGAATCGTGCAA
521 ATATAACTTTAATTGACATGGTAAAATTGAATTATTAAATAATGTTTTAGATTTGAATCGTGCAA
15533396 ATATTTTTTTTCTAAATTTTATATGAAAAAAATAAAATTACTCTAAAATTAATATCTATTACTTA
586 ATATTTTTTTTCTAAATTTTATATGAAAAAAATAAAATTACTCTAAAATTAATATCTATTACTTA
15533461 ATAAAGATAAAAGGTAAATTCTTCGTTGAGTTGAGATCCAATTGAAGTTAGACACCGACTCAATA
651 ATAAAGATAAAAGGTAAATTCTTCGTTGAGTTGAGATCCAATTGAAGTTAGACACCGACTCAATA
15533526 ATAATTGTAATAATCTTAAATCTTAGTATAAATGAGCTACAATGTCCAAACGTAAGACTTGAATT
716 ATAATTGTAATAATCTTAAATCTTAGTATAAATGAGCTACAATGTCCAAACGTAAGACTTGAATT
15533591 TTCATGAATCATAATCAAATAATCTTAAAACTATACTTGAAATTTGA
781 TTCATGAATCATAATCAAATAATCTTAAAACTATACTTGAAATTTGA
15533638 TTTTGTGCAT
Statistics
Matches: 826, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
826 816 0.99
827 10 0.01
ACGTcount: A:0.42, C:0.14, G:0.10, T:0.33
Consensus pattern (827 bp):
ATTAATATATAAATTATAATAATTTATTATAATATTATAGAAATTGAGACTAAAAATTATTAAAG
GAATTAAACTTGTTAAAAAAAAACAAATTTTATAACAAGGATAATTGAGTAACATGTGATTCTAC
ATAATCTTATATTCCGTCAACTAAACACTTGAATCTTGCTTCCCAACCAAATGAACCAAACAATG
TGATCTTACATTACACCCATAATCTTACATTCTCGTAATTTTATTACGGAATGTAATCTAAGATT
CGGCAAACCAAACGTCCCCTAAAAAGTTACCAGTGTTTTCTTCAATGACCAAAATGTGTAATTTT
GTCAAATATAGATACCACATTGGACCAAAAAAATAACATATATATCACATTTAAAAAAGCGTCAA
ACTCAAGTACCAACTTATGCATTAAGCCATAGTTGAAATATAGAGATAATTTATACTAAATTATG
GGACACCCACAATGTGAACGAACATTTTATATAACCAATTTTAAAAATTTTGATATAACAACCAA
ATATAACTTTAATTGACATGGTAAAATTGAATTATTAAATAATGTTTTAGATTTGAATCGTGCAA
ATATTTTTTTTCTAAATTTTATATGAAAAAAATAAAATTACTCTAAAATTAATATCTATTACTTA
ATAAAGATAAAAGGTAAATTCTTCGTTGAGTTGAGATCCAATTGAAGTTAGACACCGACTCAATA
ATAATTGTAATAATCTTAAATCTTAGTATAAATGAGCTACAATGTCCAAACGTAAGACTTGAATT
TTCATGAATCATAATCAAATAATCTTAAAACTATACTTGAAATTTGA
Found at i:15534723 original size:19 final size:19
Alignment explanation
Indices: 15534695--15534748 Score: 90
Period size: 19 Copynumber: 2.8 Consensus size: 19
15534685 AATCATATCT
*
15534695 TCCAAAATTGCATATCATA
1 TCCAAGATTGCATATCATA
15534714 TCCAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
*
15534733 TCTAAGATTGCATATC
1 TCCAAGATTGCATATC
15534749 CTTGAAGATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 33 1.00
ACGTcount: A:0.37, C:0.20, G:0.09, T:0.33
Consensus pattern (19 bp):
TCCAAGATTGCATATCATA
Found at i:15535169 original size:44 final size:44
Alignment explanation
Indices: 15535121--15535287 Score: 262
Period size: 44 Copynumber: 3.8 Consensus size: 44
15535111 ACCAGTATGG
* *
15535121 GAAGATAAGATCTGCTATCTTCGATCTACTTCATGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* *
15535165 GAAGACAAGATCTGTTATCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
*
15535209 GAAGACAAGATCTGCTATCTTTGATCTACTTCACGCCAATACAT
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
* * *
15535253 GAAGACAATATTTGCTTTCTTCGATCTACTTCACG
1 GAAGACAAGATCTGCTATCTTCGATCTACTTCACG
15535288 ACAACCTAGA
Statistics
Matches: 114, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
44 114 1.00
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.32
Consensus pattern (44 bp):
GAAGACAAGATCTGCTATCTTCGATCTACTTCACGCCAATACAT
Found at i:15535765 original size:88 final size:88
Alignment explanation
Indices: 15535288--15535757 Score: 751
Period size: 88 Copynumber: 5.3 Consensus size: 88
15535278 CTACTTCACG
* * * *
15535288 ACAACCTAGAGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATA
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
15535353 TGCTATCTTCAACCTGCTCCACT
66 TGCTATCTTCAACCTGCTCCACT
* * * * *
15535376 ACGACCCAAGGAGGCAAGGCTGATATCTTCGATCTGCTTCACTGTTGGTATAAGAAGGCAAGATC
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
15535441 TGCTATCTTCAACCTGCTCCACT
66 TGCTATCTTCAACCTGCTCCACT
* * * * *
15535464 ACAACCCAGGGAGACAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATC
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
*
15535529 TACTATCTTCAACCTGCTCCACT
66 TGCTATCTTCAACCTGCTCCACT
* *
15535552 ACAACCCAGGGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGTCGGTACATGAAGGCAAGATC
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
15535617 TGCTATCTTCAACCTGCTCCACT
66 TGCTATCTTCAACCTGCTCCACT
* *
15535640 ACAACCCAAGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACATGAAGGCAAGATC
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
15535705 TGCTATCTTCAACCTGCTCCACT
66 TGCTATCTTCAACCTGCTCCACT
* *
15535728 ACGACCCAGGGAGGCAAGGCCGGTATCTTC
1 ACAACCCAGGGAGGCAAGGCTGGTATCTTC
15535758 AACCTGCTCC
Statistics
Matches: 350, Mismatches: 32, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 350 1.00
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (88 bp):
ACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACAAGAAGGCAAGATC
TGCTATCTTCAACCTGCTCCACT
Found at i:15535843 original size:88 final size:88
Alignment explanation
Indices: 15535751--15536158 Score: 701
Period size: 88 Copynumber: 4.6 Consensus size: 88
15535741 GCAAGGCCGG
* * *
15535751 TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTATTTTCGATCTGCTTTGCTGT
1 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGT
*
15535816 CGATGCAGGAAGGTAAGATCTGC
66 CGATGCAGGAAGGCAAGATCTGC
*
15535839 TATCTTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGTTG
1 TATC-TTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTG
15535904 TCGATGCAGGAAGGCAAGATCTGC
65 TCGATGCAGGAAGGCAAGATCTGC
* *
15535928 TATCTTCAACCTGCTCCACTACAACCTAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCGCTGT
1 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGT
15535993 CGATGCAGGAAGGCAAGATCTGC
66 CGATGCAGGAAGGCAAGATCTGC
15536016 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTTGCTTCGCTG
1 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATC-TGCTTCGCTG
* *
15536081 -CGATGCAGGAAGGCGAGATCTAC
65 TCGATGCAGGAAGGCAAGATCTGC
*
15536104 TATCTTCAACCTGCTCCACTACAACCTAGGGAGGCAAGGCTGGTATCTTCGATCT
1 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCT
15536159 ACCTCCNNNN
Statistics
Matches: 305, Mismatches: 13, Indels: 5
0.94 0.04 0.02
Matches are distributed among these distances:
87 1 0.00
88 211 0.69
89 93 0.30
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (88 bp):
TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGT
CGATGCAGGAAGGCAAGATCTGC
Found at i:15535851 original size:396 final size:395
Alignment explanation
Indices: 15535356--15536153 Score: 1276
Period size: 396 Copynumber: 2.0 Consensus size: 395
15535346 CAAGATATGC
*
15535356 TATCTTCAACCTGCTCCACTACGACCCAAGGAGGCAAGGCTGATATCTTCGATCTGCTTCACTGT
1 TATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGATATCTTCGATCTGCTTCACTGT
* * *
15535421 TGGTATAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGACAAGGCTG
66 CGATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGACAAGGCTG
15535486 GTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCAC
131 GTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCAC
* * * *
15535551 TACAACCCAGGGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGTCGGTACATGAAGGCAAGAT
196 TACAACCCAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGAT
15535616 CTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTATCTTCGATC-TGCTTC
261 CTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTATCTTCGATCTTGCTTC
* * * *
15535680 ACTGTCGGTACATGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACGACCCAGGGAGGCAA
326 ACTG-CGATACAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAA
15535745 GGCCGG
390 GGCCGG
* * **
15535751 TATCTTCAACCTGCTCCACTACAACCC-AGAGAGGCAAGGCTGGTATTTTCGATCTGCTTTGCTG
1 TATCTTCAACCTGCTCCACTACAACCCAAG-GAGGCAAGGCTGATATCTTCGATCTGCTTCACTG
* * * *
15535815 TCGATGCAGGAAGGTAAGATCTGCTATCTTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGC
65 TCGATACAAGAAGGCAAGATCTGCTATC-TTCAACCTGCTCCACTACAACCCAGGGAGACAAGGC
* *
15535880 TGGTATCTTCGATCTGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCC
129 TGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCC
* * *
15535945 ACTACAACCTAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAG
194 ACTACAACCCAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAG
*
15536010 ATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTCGATCTTGCT
259 ATCTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTATCTTCGATCTTGCT
* * * *
15536075 TCGCTGCGATGCAGGAAGGCGAGATCTACTATCTTCAACCTGCTCCACTACAACCTAGGGAGGCA
324 TCACTGCGATACAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCA
*
15536140 AGGCTGG
389 AGGCCGG
15536147 TATCTTC
1 TATCTTC
15536154 GATCTACCTC
Statistics
Matches: 369, Mismatches: 31, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
394 2 0.01
395 78 0.21
396 280 0.76
397 9 0.02
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (395 bp):
TATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGATATCTTCGATCTGCTTCACTGT
CGATACAAGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGACAAGGCTG
GTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCAC
TACAACCCAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGAT
CTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTGGTATCTTCGATCTTGCTTC
ACTGCGATACAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAG
GCCGG
Found at i:15535919 original size:220 final size:219
Alignment explanation
Indices: 15535532--15535977 Score: 714
Period size: 220 Copynumber: 2.0 Consensus size: 219
15535522 CAAGATCTAC
*
15535532 TATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGT
1 TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGT
* *
15535597 CGGTACATGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTG
66 CGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTG
* *
15535662 GTATCTTCGATCTGCTTCACTGTCGGTACATGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
131 GTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
* *
15535727 TACGACCCAGGGAGGCAAGGCCGG
196 TACAACCCAGGGAGGCAAAGCCGG
**
15535751 TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTAT-TTTCGATCTGCTTTGCTG
1 TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTATCTTT-GATCTGCTTCACTG
* * *
15535815 TCGATGCAGGAAGGTAAGATCTGCTATCTTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGC
65 TCGATACAGGAAGGCAAGATCTGCTATC-TTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGC
** *
15535880 TGGTATCTTCGATCTGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCC
129 TGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCC
* *
15535945 ACTACAACCTAGGGAGGCAAAGCTGG
194 ACTACAACCCAGGGAGGCAAAGCCGG
15535971 TATCTTC
1 TATCTTC
15535978 GATCTGCTTC
Statistics
Matches: 208, Mismatches: 17, Indels: 3
0.91 0.07 0.01
Matches are distributed among these distances:
218 3 0.01
219 81 0.39
220 124 0.60
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (219 bp):
TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTGT
CGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACCCAAGGAGGCAAGGCTG
GTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
TACAACCCAGGGAGGCAAAGCCGG
Found at i:15535928 original size:308 final size:307
Alignment explanation
Indices: 15535444--15536065 Score: 1046
Period size: 308 Copynumber: 2.0 Consensus size: 307
15535434 CAAGATCTGC
*
15535444 TATCTTCAACCTGCTCCACTACAACCCAGGGAGACAAGGCTGGTATCTTCGATCTGCTTCGCTGT
1 TATCTTCAACCTGCTCCACTACAACCCAGAGAGACAAGGCTGGTATCTTCGATCTGCTTCGCTGT
15535509 CGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTG
66 CGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTG
* * *
15535574 GTATCTTTGATCTGCTTCACTGTCGGTACATGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
131 GTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
* * *
15535639 TACAACCCAAGGAGGCAAGGCTGGTATCTTCGATCTGCTTCACTGTCGGTACATGAAGGCAAGAT
196 TACAACCCAAGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGAT
*
15535704 CTGCTATCTTCAACCTGCTCCACTACGACCCAGGGAGGCAAGGCCGG
261 CTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCCGG
* * *
15535751 TATCTTCAACCTGCTCCACTACAACCCAGAGAGGCAAGGCTGGTATTTTCGATCTGCTTTGCTGT
1 TATCTTCAACCTGCTCCACTACAACCCAGAGAGACAAGGCTGGTATCTTCGATCTGCTTCGCTGT
* *
15535816 CGATGCAGGAAGGTAAGATCTGCTATCTTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCT
66 CGATGCAGGAAGGCAAGATCTACTATC-TTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCT
** *
15535881 GGTATCTTCGATCTGCTTCGTTGTCGATGCAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA
130 GGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCA
* * * *
15535946 CTACAACCTAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGA
195 CTACAACCCAAGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGA
*
15536011 TCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTGG
260 TCTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCCGG
15536059 TATCTTC
1 TATCTTC
15536066 GATCTTGCTT
Statistics
Matches: 293, Mismatches: 21, Indels: 1
0.93 0.07 0.00
Matches are distributed among these distances:
307 86 0.29
308 207 0.71
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (307 bp):
TATCTTCAACCTGCTCCACTACAACCCAGAGAGACAAGGCTGGTATCTTCGATCTGCTTCGCTGT
CGATGCAGGAAGGCAAGATCTACTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCTG
GTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCAC
TACAACCCAAGGAGGCAAAGCTGGTATCTTCGATCTGCTTCACTGTCGATACAGGAAGGCAAGAT
CTGCTATCTTCAACCTGCTCCACTACAACCCAGGGAGGCAAGGCCGG
Found at i:15538325 original size:45 final size:45
Alignment explanation
Indices: 15538274--15538501 Score: 196
Period size: 45 Copynumber: 5.2 Consensus size: 45
15538264 GCAAGGCTGG
*
15538274 TATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
1 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
* * * * * ** * * *
15538319 TATCTTCAACCTGCTCCACT-AC-AACCTAGGGAGGCAA-AGCTGG
1 TATCTTCGATCTGCTTCGCTGTCGATGC-AGGAAGGCAAGATCTGC
15538362 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
1 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
* * * * * * ** * * *
15538407 TATCTTCAACCTGCTCCACT-ACAACCCAGGGAGGCAAG-GCTGG
1 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
* *
15538450 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCGAGATCTAC
1 TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
15538495 TATCTTC
1 TATCTTC
15538502 AACCTGCTCC
Statistics
Matches: 132, Mismatches: 45, Indels: 12
0.70 0.24 0.06
Matches are distributed among these distances:
43 41 0.31
44 45 0.34
45 46 0.35
ACGTcount: A:0.23, C:0.27, G:0.24, T:0.26
Consensus pattern (45 bp):
TATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGC
Found at i:15538354 original size:44 final size:43
Alignment explanation
Indices: 15538301--15538532 Score: 180
Period size: 44 Copynumber: 5.3 Consensus size: 43
15538291 GCTGTCGATG
*
15538301 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
1 CAGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
* * * * * * * **
15538344 CTAGGGAGGCAA-AGCTGGTATCTTCGATCTGCTTCGCTGTCGATG
1 C-AGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-AC-AAC
*
15538389 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACC
1 CAGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAA-C
* * * * * * * **
15538433 CAGGGAGGCAAG-GCTGGTATCTTCGATCTGCTTCGCTGTCGATG
1 CAGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACT-AC-AAC
* * *
15538477 CAGGAAGGCGAGATCTACTATCTTCAACCTGCTCCACTACAAC
1 CAGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
15538520 CTAGGGAGGCAAG
1 C-AGGGAGGCAAG
15538533 GCTGGTATCT
Statistics
Matches: 136, Mismatches: 44, Indels: 17
0.69 0.22 0.09
Matches are distributed among these distances:
43 43 0.32
44 52 0.38
45 41 0.30
ACGTcount: A:0.25, C:0.28, G:0.24, T:0.23
Consensus pattern (43 bp):
CAGGGAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
Found at i:15538368 original size:43 final size:42
Alignment explanation
Indices: 15538301--15538544 Score: 155
Period size: 43 Copynumber: 5.6 Consensus size: 42
15538291 GCTGTCGATG
* * *
15538301 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAAC
1 CAGGGAGGCAA-AGCTGGTATCTTCAACCTGCTCCACTACAAC
* * * * * **
15538344 CTAGGGAGGCAAAGCTGGTATCTTCGATCTGCTTCGCTGTCGATG
1 C-AGGGAGGCAAAGCTGGTATCTTCAACCTGCTCCACT-AC-AAC
* * *
15538389 CAGGAAGGCAAGATCTGCTATCTTCAACCTGCTCCACTACAACC
1 CAGGGAGGCAA-AGCTGGTATCTTCAACCTGCTCCACTACAA-C
* * * * * * **
15538433 CAGGGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATG
1 CAGGGAGGCAAAGCTGGTATCTTCAACCTGCTCCACT-AC-AAC
* * * **
15538477 CAGGAAGGCGAGATCTACTATCTTCAACCTGCTCCACTACAAC
1 CAGGGAGGC-AAAGCTGGTATCTTCAACCTGCTCCACTACAAC
*
15538520 CTAGGGAGGCAAGGCTGGTATCTTC
1 C-AGGGAGGCAAAGCTGGTATCTTC
15538545 GATCTACTTC
Statistics
Matches: 142, Mismatches: 50, Indels: 18
0.68 0.24 0.09
Matches are distributed among these distances:
43 53 0.37
44 47 0.33
45 42 0.30
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (42 bp):
CAGGGAGGCAAAGCTGGTATCTTCAACCTGCTCCACTACAAC
Found at i:15538409 original size:88 final size:88
Alignment explanation
Indices: 15538260--15538623 Score: 552
Period size: 88 Copynumber: 4.1 Consensus size: 88
15538250 NNNNNNNNNN
15538260 GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
1 GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
15538325 CAACCTGCTCCACTACAACCTAG
66 CAACCTGCTCCACTACAACCTAG
* *
15538348 GGAGGCAAAGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
1 GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
*
15538413 CAACCTGCTCCACTACAACCCAG
66 CAACCTGCTCCACTACAACCTAG
* * *
15538436 GGAGGCAAGGCTGGTATCTTCGATCTGCTTCGCTGTCGATGCAGGAAGGCGAGATCTACTATCTT
1 GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
15538501 CAACCTGCTCCACTACAACCTAG
66 CAACCTGCTCCACTACAACCTAG
* * * * * * *
15538524 GGAGGCAAGGCTGGTATCTTCGATCTACTTCACCGTC-AGTACAGGAAGGAAATATCTGTTATTT
1 GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGA-TGCAGGAAGGCAAGATCTGCTATCT
* *
15538588 TCAACCTGCTCCGCTGCAAACC-AG
65 TCAACCTGCTCCACTAC-AACCTAG
*
15538612 GAAGGCAAGGCT
1 GGAGGCAAGGCT
15538624 TTGTGATTTC
Statistics
Matches: 254, Mismatches: 20, Indels: 4
0.91 0.07 0.01
Matches are distributed among these distances:
87 1 0.00
88 249 0.98
89 4 0.02
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (88 bp):
GGAGGCAAGGCTGGTATCTTCGATCTACTTCGCTGTCGATGCAGGAAGGCAAGATCTGCTATCTT
CAACCTGCTCCACTACAACCTAG
Found at i:15539946 original size:14 final size:15
Alignment explanation
Indices: 15539923--15539955 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
15539913 TCGTCGTTTT
*
15539923 TTCCAGATAAGA-CC
1 TTCCACATAAGATCC
15539937 TTCCACATAAGATCC
1 TTCCACATAAGATCC
15539952 TTCC
1 TTCC
15539956 CGGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGATCC
Found at i:15550837 original size:33 final size:34
Alignment explanation
Indices: 15550795--15550859 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
15550785 AGTAAAATGG
* *
15550795 TTTCCGTAAAATGA-TTTCTGGAAAATGTTTTAC
1 TTTCCGTAAAATGACTTACTGGAAAATATTTTAC
*
15550828 TTTCTGTAAAATGACTTACTGGAAAATATTTT
1 TTTCCGTAAAATGACTTACTGGAAAATATTTT
15550860 CTAGTGTTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
33 13 0.46
34 15 0.54
ACGTcount: A:0.32, C:0.11, G:0.14, T:0.43
Consensus pattern (34 bp):
TTTCCGTAAAATGACTTACTGGAAAATATTTTAC
Found at i:15550846 original size:19 final size:19
Alignment explanation
Indices: 15550809--15550847 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
15550799 CGTAAAATGA
**
15550809 TTTCTGGAAAATGTTTTAC
1 TTTCTGGAAAATGACTTAC
*
15550828 TTTCTGTAAAATGACTTAC
1 TTTCTGGAAAATGACTTAC
15550847 T
1 T
15550848 GGAAAATATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.28, C:0.13, G:0.13, T:0.46
Consensus pattern (19 bp):
TTTCTGGAAAATGACTTAC
Found at i:15565327 original size:19 final size:19
Alignment explanation
Indices: 15565303--15565358 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 19
15565293 AATCATATCT
15565303 TCCAAGATTGCATATCATA
1 TCCAAGATTGCATATCATA
*
15565322 TCCAAGATTACATATATCATA
1 TCCAAGATTGC--ATATCATA
*
15565343 TCTAAGATTGCATATC
1 TCCAAGATTGCATATC
15565359 CTTAAAGATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 15 0.47
21 17 0.53
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.34
Consensus pattern (19 bp):
TCCAAGATTGCATATCATA
Found at i:15584056 original size:25 final size:27
Alignment explanation
Indices: 15584010--15584066 Score: 105
Period size: 27 Copynumber: 2.1 Consensus size: 27
15584000 AACAAAATTC
*
15584010 TGTTGTACAGAGAACTAAAAAATTAGG
1 TGTTGTACAGAGAACTAAAAATTTAGG
15584037 TGTTGTACAGAGAACTAAAAATTTAGG
1 TGTTGTACAGAGAACTAAAAATTTAGG
15584064 TGT
1 TGT
15584067 GGAATTGTCT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.40, C:0.07, G:0.23, T:0.30
Consensus pattern (27 bp):
TGTTGTACAGAGAACTAAAAATTTAGG
Found at i:15586111 original size:23 final size:22
Alignment explanation
Indices: 15586092--15586157 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
15586082 ATACACTTGG
15586092 ACCGTAGTGTCACTTTCACTAGT
1 ACCGTAGTG-CACTTTCACTAGT
* *
15586115 ACTGTAGTGCTGCTTTCACTAGT
1 ACCGTAGTGC-ACTTTCACTAGT
*
15586138 ACCGTAGTGCCACTATCACT
1 ACCGTAGTG-CACTTTCACT
15586158 TGCGCACTTA
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
22 1 0.03
23 34 0.94
24 1 0.03
ACGTcount: A:0.21, C:0.27, G:0.18, T:0.33
Consensus pattern (22 bp):
ACCGTAGTGCACTTTCACTAGT
Found at i:15586659 original size:11 final size:11
Alignment explanation
Indices: 15586643--15586667 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
15586633 ATTTGGGAGC
15586643 AAAATGAGTGA
1 AAAATGAGTGA
15586654 AAAATGAGTGA
1 AAAATGAGTGA
15586665 AAA
1 AAA
15586668 CTGGAGCATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (11 bp):
AAAATGAGTGA
Found at i:15586901 original size:12 final size:12
Alignment explanation
Indices: 15586884--15586914 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15586874 AAAAATACCA
15586884 TTGAAGCCAACT
1 TTGAAGCCAACT
15586896 TTGAAGCCAACT
1 TTGAAGCCAACT
15586908 TTGAAGC
1 TTGAAGC
15586915 AAATTTCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (12 bp):
TTGAAGCCAACT
Found at i:15593112 original size:11 final size:11
Alignment explanation
Indices: 15593098--15593199 Score: 58
Period size: 11 Copynumber: 9.8 Consensus size: 11
15593088 GTGAATAAAG
15593098 TGAAATGAATA
1 TGAAATGAATA
*
15593109 TGAAATGAAAA
1 TGAAATGAATA
15593120 T--AA--AATA
1 TGAAATGAATA
* *
15593127 TGAATTGAATT
1 TGAAATGAATA
15593138 TGAAATGAA-A
1 TGAAATGAATA
*
15593148 CTAAAAT--AT-
1 -TGAAATGAATA
*
15593157 TTAAATGAATA
1 TGAAATGAATA
*
15593168 GGAAATGAAATA
1 TGAAATG-AATA
* *
15593180 TTAAATTAATA
1 TGAAATGAATA
15593191 TGAAATGAA
1 TGAAATGAA
15593200 AATAAAGTAT
Statistics
Matches: 66, Mismatches: 15, Indels: 20
0.65 0.15 0.20
Matches are distributed among these distances:
7 4 0.06
8 5 0.08
9 4 0.06
10 2 0.03
11 43 0.65
12 8 0.12
ACGTcount: A:0.56, C:0.01, G:0.14, T:0.29
Consensus pattern (11 bp):
TGAAATGAATA
Found at i:15593135 original size:29 final size:29
Alignment explanation
Indices: 15593103--15593224 Score: 125
Period size: 29 Copynumber: 4.4 Consensus size: 29
15593093 TAAAGTGAAA
*
15593103 TGAATATGAAATGAAAATAAAATATGAAT
1 TGAATATGAAATGAAAATAAAATATAAAT
* *
15593132 TGAATTTGAAATGAAACTAAAATATTTAAA-
1 TGAATATGAAATGAAAATAAAATA--TAAAT
*
15593162 TGAATAGGAAATG-AAAT---AT-TAAAT
1 TGAATATGAAATGAAAATAAAATATAAAT
*
15593186 T-AATATGAAATGAAAATAAAGTATAAAT
1 TGAATATGAAATGAAAATAAAATATAAAT
15593214 TGAA-ATGAAAT
1 TGAATATGAAAT
15593225 AAATTACAAT
Statistics
Matches: 76, Mismatches: 8, Indels: 19
0.74 0.08 0.18
Matches are distributed among these distances:
23 14 0.18
24 5 0.07
26 2 0.03
27 1 0.01
28 13 0.17
29 27 0.36
30 11 0.14
31 3 0.04
ACGTcount: A:0.57, C:0.01, G:0.13, T:0.30
Consensus pattern (29 bp):
TGAATATGAAATGAAAATAAAATATAAAT
Found at i:15593190 original size:23 final size:24
Alignment explanation
Indices: 15593151--15593200 Score: 75
Period size: 23 Copynumber: 2.1 Consensus size: 24
15593141 AATGAAACTA
15593151 AAATATTTAAATGAATAGGAAATG
1 AAATATTTAAATGAATAGGAAATG
* *
15593175 AAATA-TTAAATTAATATGAAATG
1 AAATATTTAAATGAATAGGAAATG
15593198 AAA
1 AAA
15593201 ATAAAGTATA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
23 19 0.79
24 5 0.21
ACGTcount: A:0.58, C:0.00, G:0.12, T:0.30
Consensus pattern (24 bp):
AAATATTTAAATGAATAGGAAATG
Found at i:15593309 original size:21 final size:21
Alignment explanation
Indices: 15593253--15593319 Score: 62
Period size: 21 Copynumber: 3.0 Consensus size: 21
15593243 AATTAATATG
*
15593253 AAAAAAACGTAAATTAAAATGGAA
1 AAAAAAAC--AAATTTAAAT-GAA
** *
15593277 AATGAAATAAATTTAAATGAA
1 AAAAAAACAAATTTAAATGAA
*
15593298 AAAAAAACAAATTTAGATGAA
1 AAAAAAACAAATTTAAATGAA
15593319 A
1 A
15593320 TGAAATGTGA
Statistics
Matches: 35, Mismatches: 8, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
21 21 0.60
22 9 0.26
24 5 0.14
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (21 bp):
AAAAAAACAAATTTAAATGAA
Found at i:15593332 original size:12 final size:11
Alignment explanation
Indices: 15593315--15593396 Score: 67
Period size: 12 Copynumber: 6.9 Consensus size: 11
15593305 CAAATTTAGA
15593315 TGAAATGAAAT
1 TGAAATGAAAT
15593326 GTGAAATGAAA-
1 -TGAAATGAAAT
* *
15593337 TGAGCAATAAAAA
1 TGA--AATGAAAT
*
15593350 TGAAATGAATT
1 TGAAATGAAAT
15593361 TAGAAATGGAAAT
1 T-GAAAT-GAAAT
15593374 TGGAAATTGAAAT
1 T-GAAA-TGAAAT
15593387 TGAAATGAAA
1 TGAAATGAAA
15593397 AAAGAAAAAT
Statistics
Matches: 58, Mismatches: 6, Indels: 13
0.75 0.08 0.17
Matches are distributed among these distances:
10 3 0.05
11 11 0.19
12 25 0.43
13 18 0.31
14 1 0.02
ACGTcount: A:0.54, C:0.01, G:0.21, T:0.24
Consensus pattern (11 bp):
TGAAATGAAAT
Found at i:15593605 original size:28 final size:27
Alignment explanation
Indices: 15593554--15593616 Score: 72
Period size: 28 Copynumber: 2.3 Consensus size: 27
15593544 AAAACTAAAA
** * * *
15593554 AAATGAAATGAGAAAATTTTTGAATTT
1 AAATGAAATGAGAAAAAATATGAAATG
15593581 AAATGAAATTGAGAAAAAATATGAAATG
1 AAATGAAA-TGAGAAAAAATATGAAATG
15593609 AAATGAAA
1 AAATGAAA
15593617 AAAATTTGAA
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 8 0.27
28 22 0.73
ACGTcount: A:0.57, C:0.00, G:0.16, T:0.27
Consensus pattern (27 bp):
AAATGAAATGAGAAAAAATATGAAATG
Found at i:15593611 original size:23 final size:21
Alignment explanation
Indices: 15593581--15593648 Score: 79
Period size: 21 Copynumber: 3.3 Consensus size: 21
15593571 TTTTGAATTT
15593581 AAATGAAATTGAGAAAAAATATG
1 AAATGAAA-TGA-AAAAAATATG
*
15593604 AAATGAAATGAAAAAAATTTG
1 AAATGAAATGAAAAAAATATG
*
15593625 AACTGAAA--AAAAAAAT-TG
1 AAATGAAATGAAAAAAATATG
15593643 AAATGA
1 AAATGA
15593649 GACTACTTGT
Statistics
Matches: 42, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
18 7 0.17
19 8 0.19
21 16 0.38
22 3 0.07
23 8 0.19
ACGTcount: A:0.63, C:0.01, G:0.15, T:0.21
Consensus pattern (21 bp):
AAATGAAATGAAAAAAATATG
Found at i:15593715 original size:20 final size:19
Alignment explanation
Indices: 15593692--15593731 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
15593682 AATACTAGGG
*
15593692 AAAAAATAAATTTAAATGAA
1 AAAAAATAAA-TAAAATGAA
*
15593712 AAAAAATTAATAAAATGAA
1 AAAAAATAAATAAAATGAA
15593731 A
1 A
15593732 TGTTAAATGC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 9 0.50
20 9 0.50
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (19 bp):
AAAAAATAAATAAAATGAA
Found at i:15593754 original size:28 final size:28
Alignment explanation
Indices: 15593720--15593799 Score: 117
Period size: 28 Copynumber: 2.9 Consensus size: 28
15593710 AAAAAAAATT
*
15593720 AATAAAATGAAATGTTAAATGCATATGA
1 AATAAAATGAAATGTTAAATGAATATGA
* *
15593748 AATAAAATGTAAT-TTGTAATGAATATGA
1 AATAAAATGAAATGTT-AAATGAATATGA
15593776 AATAAAATGAAATGTTAAATGAAT
1 AATAAAATGAAATGTTAAATGAAT
15593800 TTGTAATGAT
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
27 2 0.04
28 41 0.91
29 2 0.04
ACGTcount: A:0.54, C:0.01, G:0.14, T:0.31
Consensus pattern (28 bp):
AATAAAATGAAATGTTAAATGAATATGA
Found at i:15593807 original size:39 final size:39
Alignment explanation
Indices: 15593752--15593837 Score: 129
Period size: 39 Copynumber: 2.2 Consensus size: 39
15593742 ATATGAAATA
15593752 AAATGTAATTTGTAATGAATATGAAATAAAATGAAA-TGTT
1 AAATG-AATTTGTAATGAATATGAAATAAAATGAAAGT-TT
* *
15593792 AAATGAATTTGTAATGATTATGAAATGAAATGAAAGTTT
1 AAATGAATTTGTAATGAATATGAAATAAAATGAAAGTTT
15593831 AAATGAA
1 AAATGAA
15593838 AATAAATTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
39 37 0.86
40 6 0.14
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (39 bp):
AAATGAATTTGTAATGAATATGAAATAAAATGAAAGTTT
Found at i:15593834 original size:17 final size:17
Alignment explanation
Indices: 15593808--15593859 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 17
15593798 ATTTGTAATG
15593808 ATTATGAAATGAAATGAA
1 ATTAT-AAATGAAATGAA
15593826 AGTT-TAAATGAAAAT-AA
1 A-TTATAAATG-AAATGAA
15593843 ATTATAAATTGAAATGA
1 ATTATAAA-TGAAATGA
15593860 TTTTTTTAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 10
0.74 0.00 0.26
Matches are distributed among these distances:
16 2 0.07
17 16 0.55
18 9 0.31
19 2 0.07
ACGTcount: A:0.56, C:0.00, G:0.13, T:0.31
Consensus pattern (17 bp):
ATTATAAATGAAATGAA
Found at i:15593940 original size:20 final size:21
Alignment explanation
Indices: 15593895--15593948 Score: 65
Period size: 20 Copynumber: 2.6 Consensus size: 21
15593885 TAATATGAAA
* *
15593895 AAAATTGAAATGAGAAAAAAT
1 AAAATTTAAATGAGAAAAAAG
* *
15593916 TAAATTTTAATG-GAAAAAAG
1 AAAATTTAAATGAGAAAAAAG
15593936 AAAATTTAAATGA
1 AAAATTTAAATGA
15593949 AATGAAATTT
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
20 17 0.65
21 9 0.35
ACGTcount: A:0.61, C:0.00, G:0.13, T:0.26
Consensus pattern (21 bp):
AAAATTTAAATGAGAAAAAAG
Found at i:15593951 original size:5 final size:5
Alignment explanation
Indices: 15593943--15593994 Score: 59
Period size: 5 Copynumber: 9.6 Consensus size: 5
15593933 AAGAAAATTT
*
15593943 AAATG AAATG AAATTT AAATG AAATG AAAATGG AAATGG AAATG AAATG
1 AAATG AAATG AAA-TG AAATG AAATG -AAAT-G AAAT-G AAATG AAATG
15593992 AAA
1 AAA
15593995 ATAAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 23 0.55
6 18 0.43
7 1 0.02
ACGTcount: A:0.60, C:0.00, G:0.19, T:0.21
Consensus pattern (5 bp):
AAATG
Found at i:15593962 original size:11 final size:11
Alignment explanation
Indices: 15593943--15593996 Score: 65
Period size: 11 Copynumber: 4.9 Consensus size: 11
15593933 AAGAAAATTT
15593943 AAATG-AAATG
1 AAATGAAAATG
**
15593953 AAATTTAAATG
1 AAATGAAAATG
15593964 AAATGAAAATGG
1 AAATGAAAAT-G
*
15593976 AAATGGAAATG
1 AAATGAAAATG
15593987 AAATGAAAAT
1 AAATGAAAAT
15593997 AAAAAAAAAT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
10 4 0.11
11 23 0.62
12 10 0.27
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (11 bp):
AAATGAAAATG
Found at i:15595343 original size:57 final size:57
Alignment explanation
Indices: 15595274--15595444 Score: 342
Period size: 57 Copynumber: 3.0 Consensus size: 57
15595264 CAACAATTTG
15595274 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
1 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
15595331 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
1 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
15595388 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
1 GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
15595445 CTTACTTTCC
Statistics
Matches: 114, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 114 1.00
ACGTcount: A:0.35, C:0.18, G:0.11, T:0.37
Consensus pattern (57 bp):
GTACCCAAAATATCAATTCACAAGGTAAATCATTTTGCATTGTTTCATGTTACTTAA
Found at i:15596336 original size:25 final size:25
Alignment explanation
Indices: 15596308--15596396 Score: 110
Period size: 25 Copynumber: 3.6 Consensus size: 25
15596298 AGCTCCTCTA
* *
15596308 AGCTGAATAACGGTAAGCTTATAAG
1 AGCTGAATATCGGTAAGCTCATAAG
*
15596333 AGCTGAGTATCGGTAAGCTCATAAG
1 AGCTGAATATCGGTAAGCTCATAAG
* *
15596358 ATCTGAA-ATTGGTAAGCTCATAAG
1 AGCTGAATATCGGTAAGCTCATAAG
*
15596382 AGCT-AAAATCGGTAA
1 AGCTGAATATCGGTAA
15596397 CCCTAATGAC
Statistics
Matches: 55, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
23 2 0.04
24 26 0.47
25 27 0.49
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (25 bp):
AGCTGAATATCGGTAAGCTCATAAG
Found at i:15596376 original size:24 final size:24
Alignment explanation
Indices: 15596308--15596396 Score: 106
Period size: 24 Copynumber: 3.6 Consensus size: 24
15596298 AGCTCCTCTA
* *
15596308 AGCTGAATAACGGTAAGCTTATAAG
1 AGCTGAA-ATCGGTAAGCTCATAAG
*
15596333 AGCTGAGTATCGGTAAGCTCATAAG
1 AGCTGA-AATCGGTAAGCTCATAAG
* *
15596358 ATCTGAAATTGGTAAGCTCATAAG
1 AGCTGAAATCGGTAAGCTCATAAG
*
15596382 AGCTAAAATCGGTAA
1 AGCTGAAATCGGTAA
15596397 CCCTAATGAC
Statistics
Matches: 54, Mismatches: 9, Indels: 3
0.82 0.14 0.05
Matches are distributed among these distances:
24 28 0.52
25 26 0.48
ACGTcount: A:0.38, C:0.13, G:0.24, T:0.25
Consensus pattern (24 bp):
AGCTGAAATCGGTAAGCTCATAAG
Found at i:15599517 original size:18 final size:17
Alignment explanation
Indices: 15599496--15599623 Score: 57
Period size: 19 Copynumber: 6.8 Consensus size: 17
15599486 TTATTTTGTA
15599496 ATTATTCTATTTTTTAAT
1 ATTATT-TATTTTTTAAT
15599514 ATTAATTTAATTTTTCTAAAAT
1 ATT-ATTT-ATTTTT-T--AAT
15599536 AATTATTT-TTTTGAATTAAAT
1 -ATTATTTATTTT---TT-AAT
*
15599557 ATTTATTTATTTTGT-A-
1 A-TTATTTATTTTTTAAT
15599573 ATTATTCTATTTTTTAAT
1 ATTATT-TATTTTTTAAT
15599591 ATTAATTTAATTTTTCTAA-
1 ATT-ATTT-ATTTTT-TAAT
* *
15599610 AATAATTATTTTTT
1 ATTATTTATTTTTT
15599624 TGAATAAATA
Statistics
Matches: 89, Mismatches: 4, Indels: 36
0.69 0.03 0.28
Matches are distributed among these distances:
15 5 0.06
16 9 0.10
17 8 0.09
18 11 0.12
19 21 0.24
20 9 0.10
21 10 0.11
22 12 0.13
23 4 0.04
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.62
Consensus pattern (17 bp):
ATTATTTATTTTTTAAT
Found at i:15599528 original size:19 final size:19
Alignment explanation
Indices: 15599504--15599605 Score: 61
Period size: 19 Copynumber: 5.3 Consensus size: 19
15599494 TAATTATTCT
15599504 ATTTTTTAATATTAATTTA
1 ATTTTTTAATATTAATTTA
*
15599523 ATTTTTCTAA-AATAA-TTA
1 ATTTTT-TAATATTAATTTA
* * *
15599541 TTTTTTTGAAT-TAAATATTT
1 ATTTTTT-AATATTAAT-TTA
**
15599561 ATTTATTTTGTAATT-ATTCT-
1 ATTT-TTTAAT-ATTAATT-TA
15599581 ATTTTTTAATATTAATTTA
1 ATTTTTTAATATTAATTTA
15599600 ATTTTT
1 ATTTTT
15599606 CTAAAATAAT
Statistics
Matches: 61, Mismatches: 11, Indels: 22
0.65 0.12 0.23
Matches are distributed among these distances:
17 1 0.02
18 16 0.26
19 23 0.38
20 14 0.23
21 6 0.10
22 1 0.02
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
ATTTTTTAATATTAATTTA
Found at i:15599539 original size:41 final size:41
Alignment explanation
Indices: 15599494--15599619 Score: 140
Period size: 38 Copynumber: 3.2 Consensus size: 41
15599484 CTTTATTTTG
15599494 TAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAA
1 TAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAA
* * * **
15599535 TAATTA-T-T-TTTTTGAAT-TAAATATTTATTTATT-T--TG
1 TAATTATTCTATTTTTTAATATTAAT-TTAATTT-TTCTAAAA
15599571 TAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAA
1 TAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAA
15599612 TAATTATT
1 TAATTATT
15599620 TTTTTGAATA
Statistics
Matches: 66, Mismatches: 10, Indels: 18
0.70 0.11 0.19
Matches are distributed among these distances:
36 6 0.09
37 5 0.08
38 18 0.27
39 18 0.27
40 5 0.08
41 14 0.21
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.60
Consensus pattern (41 bp):
TAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAA
Found at i:15599562 original size:21 final size:23
Alignment explanation
Indices: 15599532--15599576 Score: 67
Period size: 21 Copynumber: 2.0 Consensus size: 23
15599522 AATTTTTCTA
15599532 AAATAATTATTT-TTTTG-AATT
1 AAATAATTATTTATTTTGTAATT
*
15599553 AAATATTTATTTATTTTGTAATT
1 AAATAATTATTTATTTTGTAATT
15599576 A
1 A
15599577 TTCTATTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 11 0.52
22 5 0.24
23 5 0.24
ACGTcount: A:0.38, C:0.00, G:0.04, T:0.58
Consensus pattern (23 bp):
AAATAATTATTTATTTTGTAATT
Found at i:15599590 original size:77 final size:77
Alignment explanation
Indices: 15599474--15599633 Score: 304
Period size: 77 Copynumber: 2.1 Consensus size: 77
15599464 TTTTTATCTG
15599474 TAAATATTTACTTTATTTTGTAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAATAAT
1 TAAATATTTACTTTATTTTGTAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAATAAT
15599539 TATTTTTTTGAA
66 TATTTTTTTGAA
15599551 TTAAATATTTA-TTTATTTTGTAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAATAA
1 -TAAATATTTACTTTATTTTGTAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAATAA
15599615 TTATTTTTTTGAA
65 TTATTTTTTTGAA
15599628 TAAATA
1 TAAATA
15599634 ACTTCGAAAT
Statistics
Matches: 82, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
76 6 0.07
77 66 0.80
78 10 0.12
ACGTcount: A:0.35, C:0.03, G:0.03, T:0.59
Consensus pattern (77 bp):
TAAATATTTACTTTATTTTGTAATTATTCTATTTTTTAATATTAATTTAATTTTTCTAAAATAAT
TATTTTTTTGAA
Found at i:15599872 original size:90 final size:90
Alignment explanation
Indices: 15599748--15600100 Score: 582
Period size: 90 Copynumber: 3.9 Consensus size: 90
15599738 AAAAAATATA
* * * * *
15599748 AAATTCAAAC-AAAAATAATACGGACTAAATTAAATTTAAACACCCAACAAGCTACAACCAGATG
1 AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATG
15599812 GGTAAAATTAATACACGAATATTTT
66 GGTAAAATTAATACACGAATATTTT
* * *
15599837 AAATTCAAACTACATATAATACAGACTAAAATAAATTTAAACACCCGACAAACTACAAACAGATG
1 AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATG
*
15599902 GGTAAAATTAATGCACGAATATTTT
66 GGTAAAATTAATACACGAATATTTT
* *
15599927 AAATTCAAACTATATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATT
1 AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATG
*
15599992 GGTAAAATTAATACACGAAAATTTT
66 GGTAAAATTAATACACGAATATTTT
*
15600017 AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATT
1 AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATG
15600082 GGTAAAATTAATACACGAA
66 GGTAAAATTAATACACGAA
15600101 AATATAAAAA
Statistics
Matches: 247, Mismatches: 16, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
89 10 0.04
90 237 0.96
ACGTcount: A:0.51, C:0.17, G:0.08, T:0.24
Consensus pattern (90 bp):
AAATTCAAACTACATATAATACAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATG
GGTAAAATTAATACACGAATATTTT
Found at i:15600186 original size:180 final size:179
Alignment explanation
Indices: 15599729--15600186 Score: 478
Period size: 180 Copynumber: 2.5 Consensus size: 179
15599719 ATTATAGAAT
** * * * *
15599729 ATTAATACAAAAAAATATAAAATTCAAAC-AAAAATAATACGGACTAAATTAAATTTAAACACCC
1 ATTAATACACGAAAATATAAAAATCAAACTATAAATAATACAGACTAAATTAAATTTAAACACAC
* ** * * * * *
15599793 AACAAGCTACAACCAGATGGGTAAAATTAATACACGAATATTTTAAATTCAAACTACATATAATA
66 AAAAAAATACAA-CACATTGCTAAAAATAATACACGAAAATTTTAAATTCAAACTACATATAATA
*
15599858 CAGACTAAAATAAATTTAAACACCCGACAAACTACAAACAGATGGGTAAA
130 CAGACTAAAATAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAA
* * * * * * *
15599908 ATTAATGCACGAATATTTTAAATTCAAACTATATATAATACAGACTAAATTAAATTTAAACACCC
1 ATTAATACACGAAAATATAAAAATCAAACTATAAATAATACAGACTAAATTAAATTTAAACACAC
* * * * *
15599973 AACAAACTACAAGCAGATTGGTAAAATTAATACACGAAAATTTTAAATTCAAACTACATATAATA
66 AAAAAAATACAA-CACATTGCTAAAAATAATACACGAAAATTTTAAATTCAAACTACATATAATA
* * *
15600038 CAGACTAAATTAAATTTAAACACCCAACAAACTACAAGCAGATTGGTAAA
130 CAGACTAAAATAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAA
* * * *
15600088 ATTAATACACGAAAATATAAAAATGAAACCT-TAAACCCTAA-AC-GACTACATTAAATTTATAG
1 ATTAATACACGAAAATATAAAAATCAAA-CTATAAA---TAATACAGACTAAATTAAATTTAAAC
* *
15600150 ATATAAAAAAATACAA-ACATT-CTAAAGAAATAATACA
62 ACACAAAAAAATACAACACATTGCT-AA-AAATAATACA
15600187 ATTATTTTGA
Statistics
Matches: 237, Mismatches: 35, Indels: 13
0.83 0.12 0.05
Matches are distributed among these distances:
178 1 0.00
179 29 0.12
180 173 0.73
181 29 0.12
182 2 0.01
183 3 0.01
ACGTcount: A:0.53, C:0.16, G:0.07, T:0.24
Consensus pattern (179 bp):
ATTAATACACGAAAATATAAAAATCAAACTATAAATAATACAGACTAAATTAAATTTAAACACAC
AAAAAAATACAACACATTGCTAAAAATAATACACGAAAATTTTAAATTCAAACTACATATAATAC
AGACTAAAATAAATTTAAACACCCAACAAACTACAAACAGATGGGTAAA
Found at i:15604344 original size:14 final size:13
Alignment explanation
Indices: 15604324--15604358 Score: 54
Period size: 12 Copynumber: 2.8 Consensus size: 13
15604314 TATTATGTAT
15604324 TAAAAAAAAGATA
1 TAAAAAAAAGATA
*
15604337 TAATAAAAA-ATA
1 TAAAAAAAAGATA
15604349 TAAAAAAAAG
1 TAAAAAAAAG
15604359 TTGTTAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (13 bp):
TAAAAAAAAGATA
Found at i:15604675 original size:27 final size:26
Alignment explanation
Indices: 15604618--15604676 Score: 73
Period size: 27 Copynumber: 2.2 Consensus size: 26
15604608 ACTTTTCAAT
*
15604618 CTTTTAAAATTTAGTCTATTGACTTA
1 CTTTTAAAATTTAATCTATTGACTTA
* * *
15604644 ATTTTAAAATGTTAATCTTTTTACTTA
1 CTTTTAAAAT-TTAATCTATTGACTTA
15604671 CTTTTA
1 CTTTTA
15604677 GTCCATCTAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 9 0.33
27 18 0.67
ACGTcount: A:0.31, C:0.10, G:0.05, T:0.54
Consensus pattern (26 bp):
CTTTTAAAATTTAATCTATTGACTTA
Found at i:15608952 original size:46 final size:46
Alignment explanation
Indices: 15608895--15609033 Score: 224
Period size: 46 Copynumber: 3.0 Consensus size: 46
15608885 TGGCAAATTG
*
15608895 TGAAAATTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
* *
15608941 TGAAAAGTAGGTATGGTGTTTCAGTGAGGAAAACCATACTGAGTTG
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
* * *
15608987 TGAAAAGTAGGTATGGTATTTCAATGAAGGAAACCATACTGAGTTA
1 TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
15609033 T
1 T
15609034 AGCATTGTAA
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
46 85 1.00
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.29
Consensus pattern (46 bp):
TGAAAAGTAGGTATGGTGTTTCAGTGAAGAAAACCATACTGAGTTA
Found at i:15613383 original size:21 final size:21
Alignment explanation
Indices: 15613359--15613403 Score: 72
Period size: 21 Copynumber: 2.1 Consensus size: 21
15613349 TACACAGGCG
* *
15613359 TGTGAAATAGTCACACGAGCA
1 TGTGAAATAGCCACACGACCA
15613380 TGTGAAATAGCCACACGACCA
1 TGTGAAATAGCCACACGACCA
15613401 TGT
1 TGT
15613404 ACTGAGCCAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (21 bp):
TGTGAAATAGCCACACGACCA
Found at i:15614458 original size:33 final size:33
Alignment explanation
Indices: 15614386--15614458 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
15614376 GCATGGATGT
* ** *
15614386 TGCTATGAAGAAGATGGCTAAAGAGCATCATGC
1 TGCTATGAACAAGATGGCTAAAGAGCAAAAGGC
** *
15614419 CACTATGAACAAGATGGCTGAAGAGCAAAAGGC
1 TGCTATGAACAAGATGGCTAAAGAGCAAAAGGC
15614452 TGCTATG
1 TGCTATG
15614459 GCGGGCTTAA
Statistics
Matches: 31, Mismatches: 9, Indels: 0
0.77 0.22 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.19
Consensus pattern (33 bp):
TGCTATGAACAAGATGGCTAAAGAGCAAAAGGC
Found at i:15620445 original size:141 final size:141
Alignment explanation
Indices: 15620185--15620466 Score: 431
Period size: 141 Copynumber: 2.0 Consensus size: 141
15620175 TGACTTCATT
* * * * * **
15620185 CTCTTAAATGGTATCATATTGTAGGATATGATGTGTTGGGATCAACTCGTATAAACAGTGAAATA
1 CTCTCAAATGGTATCATATCGTAGGATATGATGTGTTGGGACCAACCCATATAAACAACGAAATA
*
15620250 GAAAAAGGTAAAGAAGATCGAACACAAATATTTTACGTGAAAAACTCCTCCGAAGAGGATAAAAA
66 GAAAAAGGTAAAGAAGATCGAACACAAATATTTTACGTAAAAAACTCCTCCGAAGAGGATAAAAA
15620315 CCATGGACAAA
131 CCATGGACAAA
* *
15620326 CTCTCAAATGGTATCATATCGTAGGATATGATGTGTTGGGGACCGACCCATATAAATAACGAAAT
1 CTCTCAAATGGTATCATATCGTAGGATATGATGTGTT-GGGACCAACCCATATAAACAACGAAAT
* *
15620391 AGAAAAAGGTAGAG-AGATCGAACACAAATATTTTACGTAAAAAACTCCTTCGAAGAGGATAAAA
65 AGAAAAAGGTAAAGAAGATCGAACACAAATATTTTACGTAAAAAACTCCTCCGAAGAGGATAAAA
*
15620455 ACCATGGGCAAA
130 ACCATGGACAAA
15620467 GAAAAATTCA
Statistics
Matches: 127, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
141 94 0.74
142 33 0.26
ACGTcount: A:0.42, C:0.15, G:0.20, T:0.23
Consensus pattern (141 bp):
CTCTCAAATGGTATCATATCGTAGGATATGATGTGTTGGGACCAACCCATATAAACAACGAAATA
GAAAAAGGTAAAGAAGATCGAACACAAATATTTTACGTAAAAAACTCCTCCGAAGAGGATAAAAA
CCATGGACAAA
Found at i:15624606 original size:13 final size:13
Alignment explanation
Indices: 15624590--15624614 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
15624580 AAAATATACC
15624590 AAAAAAAACCTGT
1 AAAAAAAACCTGT
15624603 AAAAAAAACCTG
1 AAAAAAAACCTG
15624615 ACAACAGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.08, T:0.12
Consensus pattern (13 bp):
AAAAAAAACCTGT
Found at i:15624670 original size:27 final size:27
Alignment explanation
Indices: 15624640--15624696 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
15624630 GGCCAATCAC
*
15624640 ATTGG-CGGCACCAAAGGTGCCAAAGTG
1 ATTGGCCGG-ACCAAAGGTGCCAAAGAG
*
15624667 ATTGGCCTGACCAAAGGTGCCAAAGAG
1 ATTGGCCGGACCAAAGGTGCCAAAGAG
15624694 ATT
1 ATT
15624697 AGCTTGACCG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
27 25 0.93
28 2 0.07
ACGTcount: A:0.32, C:0.21, G:0.30, T:0.18
Consensus pattern (27 bp):
ATTGGCCGGACCAAAGGTGCCAAAGAG
Found at i:15624704 original size:27 final size:27
Alignment explanation
Indices: 15624649--15624705 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
15624639 CATTGGCGGC
* *
15624649 ACCAAAGGTGCCAAAGTGATTGGCCTG
1 ACCAAAGGTGCCAAAGAGATTAGCCTG
*
15624676 ACCAAAGGTGCCAAAGAGATTAGCTTG
1 ACCAAAGGTGCCAAAGAGATTAGCCTG
15624703 ACC
1 ACC
15624706 GTGATTGGTC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (27 bp):
ACCAAAGGTGCCAAAGAGATTAGCCTG
Found at i:15624723 original size:42 final size:42
Alignment explanation
Indices: 15624664--15624748 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
15624654 AGGTGCCAAA
*
15624664 GTGATTGGCCTGACCAAAGGTGCCAAAGAGATTAGCTTGACC
1 GTGATTGGCCTGACCAAAGGTGCCAAAGAGATTAGCCTGACC
* *
15624706 GTGATTGGTCTGACCAAAGGTGCCAAAGAGATTGGCCTGACC
1 GTGATTGGCCTGACCAAAGGTGCCAAAGAGATTAGCCTGACC
15624748 G
1 G
15624749 GACTAAAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.27, C:0.21, G:0.31, T:0.21
Consensus pattern (42 bp):
GTGATTGGCCTGACCAAAGGTGCCAAAGAGATTAGCCTGACC
Found at i:15625682 original size:27 final size:27
Alignment explanation
Indices: 15625643--15625699 Score: 87
Period size: 27 Copynumber: 2.1 Consensus size: 27
15625633 ATTTTAGTCC
* *
15625643 GGTCAAGCTAATCTCTTTGGCACCTTT
1 GGTCAAGCCAATCACTTTGGCACCTTT
*
15625670 GGTCAGGCCAATCACTTTGGCACCTTT
1 GGTCAAGCCAATCACTTTGGCACCTTT
15625697 GGT
1 GGT
15625700 GCCGCCAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.18, C:0.26, G:0.23, T:0.33
Consensus pattern (27 bp):
GGTCAAGCCAATCACTTTGGCACCTTT
Found at i:15625706 original size:27 final size:27
Alignment explanation
Indices: 15625643--15625708 Score: 80
Period size: 27 Copynumber: 2.4 Consensus size: 27
15625633 ATTTTAGTCC
* * *
15625643 GGTCAAGCTAATCTCTTTGGCACCTTT
1 GGTCACGCCAATCACTTTGGCACCTTT
*
15625670 GGTCAGGCCAATCACTTTGGCACCTTT
1 GGTCACGCCAATCACTTTGGCACCTTT
15625697 GGTGC-CGCCAAT
1 GGT-CACGCCAAT
15625709 GTGATTGGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
27 33 0.97
28 1 0.03
ACGTcount: A:0.18, C:0.29, G:0.23, T:0.30
Consensus pattern (27 bp):
GGTCACGCCAATCACTTTGGCACCTTT
Found at i:15625804 original size:28 final size:26
Alignment explanation
Indices: 15625750--15625813 Score: 83
Period size: 28 Copynumber: 2.4 Consensus size: 26
15625740 TTTTTTGGGT
**
15625750 ATATTTTGGTAAATAAAAAAATTATA
1 ATATTTTGGTAAATAAAAAAAGGATA
15625776 ATATTTTGGTAAATAAAAAAAAAGGATA
1 ATATTTTGGTAAAT--AAAAAAAGGATA
*
15625804 ACATTTTGGT
1 ATATTTTGGT
15625814 TAATTCTTTT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
26 14 0.42
28 19 0.58
ACGTcount: A:0.50, C:0.02, G:0.12, T:0.36
Consensus pattern (26 bp):
ATATTTTGGTAAATAAAAAAAGGATA
Found at i:15627614 original size:228 final size:227
Alignment explanation
Indices: 15627217--15628553 Score: 1433
Period size: 228 Copynumber: 5.9 Consensus size: 227
15627207 TTCAAAATAG
* * * *
15627217 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCTGATAC
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAGAGTTCTGATAC
* * * *
15627282 CATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTTA
66 CATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTGA
*
15627347 TCTTTGCTGGTAAACAGCTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
131 TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
* ** *
15627412 ACACTCCATTTGGTCCTCCGATTGAGGGGTGGT
196 ACACTCCACTTGGTCCTCCG-TTCCGTGGTGGT
*
15627445 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAAAGTTCTGATAC
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAGAGTTCTGATAC
* * *
15627510 CATCGACAATGTAAAGGCCAAGATCCAAGACAAAGAAGGGATCCCACCAGACCAGCAGAGGCTTA
66 CATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTGA
15627575 TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
131 TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
* ** *
15627640 ACACTCCATTTGGTCCTCCGATTGAGGGGTGGT
196 ACACTCCACTTGGTCCTCCG-TTCCGTGGTGGT
* *
15627673 ATGCAAATTTTTGTCAAGACCCTCACCGGAAAGACCATCA-CATTGGAGGTGGAGAGTTCTGATA
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTT-GAGGTGGAGAGTTCTGATA
* * * * * * * *
15627737 CGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGCTG
65 CCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTG
* * * * * * *
15627802 ATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCA-CATTGGCTGATTACAACATCCAGAAGGAGT
130 ATCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTT-GCTGACTACAACATCCAGAAGGAAT
* * * * *
15627866 CCACACTCCACTTGGTGCTTCGCCTCCGTGGAGGA
194 CCACACTCCACTTGGTCCTCCG-TTCCGTGGTGGT
* ** * * * * * *
15627901 ATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTA-CATTGGAGGTAGAGAGTTCAGATA
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTT-GAGGTGGAGAGTTCTGATA
* * * * * * *
15627965 CCATTGACAATGTTAAGGCAAAAATTCAGGACAAGG-AGGGAATCCCCCCAGACCAACAGAGGCT
65 CCATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGG-ATCCCACCAGACCAGCAGAGGCT
* * * * * *
15628029 GATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAATATCCAGAAGGAGT
129 GATCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAAT
* * * *
15628094 CCACCCTCCACTTGGTGCTTCGTCTTCGTGGTGGT
194 CCACACTCCACTTGGTCCTCCGT-TCCGTGGTGGT
* * * * * * * * *
15628129 ATGCAGATTTTTGTGAAGACACTTACCGGGAAGACCATCACCCTGGAAGTTGAGAGCTCTGACAC
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAGAGTTCTGATAC
* * * * * * *
15628194 AATCGATAATGTTAAGGCCAAAATTCAAGATAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTGA
66 CATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTGA
* * * ** * * * *
15628259 TATTTGCTGG-AAAGCAGCTAGAGGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAGTC
131 TCTTTGCTGGTAAA-CAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATC
* * *
15628323 CACCCTCCACTTGGTTCTCCGTCTCCGTGGTGGG
195 CACACTCCACTTGGTCCTCCGT-TCCGTGGTGGT
* * * * * * * * * * *
15628357 ATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTCAGACAC
1 ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAGAGTTCTGATAC
* * * * * *
15628422 GATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAGAGGCTGA
66 CATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTGA
* * * * * ** * * *
15628487 TTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTTGCAGATTACAACATCCAGAAGGAATCC
131 TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
15628552 AC
196 AC
15628554 TTTGCACCTG
Statistics
Matches: 974, Mismatches: 126, Indels: 18
0.87 0.11 0.02
Matches are distributed among these distances:
227 11 0.01
228 954 0.98
229 9 0.01
ACGTcount: A:0.30, C:0.24, G:0.25, T:0.22
Consensus pattern (227 bp):
ATGCAAATTTTTGTCAAGACCCTCACCGGGAAGACCATCACCCTTGAGGTGGAGAGTTCTGATAC
CATCGACAATGTTAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAGCAGAGGCTGA
TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
ACACTCCACTTGGTCCTCCGTTCCGTGGTGGT
Found at i:15628534 original size:684 final size:684
Alignment explanation
Indices: 15627217--15628577 Score: 1699
Period size: 684 Copynumber: 2.0 Consensus size: 684
15627207 TTCAAAATAG
* * *
15627217 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGTTCTGATAC
1 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCATTGAGGTAGAAAGTTCAGATAC
* * *
15627282 CATCGACAATGTAAAGACCAAGATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTTA
66 CATCGACAATGTAAAGACAAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTGA
* *
15627347 TCTTTGCTGGTAAACAGCTGGAGGATGGCCGTACCCTTGCTGACTACAACATCCAGAAGGAATCC
131 TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTGGCTGACTACAACATCCAGAAGGAATCC
* *
15627412 ACACTCCATTTGGTCCTCCGATTGAGGGGTGGTATGCAAATTTTTGTCAAGACCCTCACCGGGAA
196 ACACTCCACTTGGTCCTCCGATTGAGGGGTGGTATGCAAATTTTTGTCAAGACACTCACCGGGAA
* * * * * *
15627477 GACCATCACCCTTGAGGTGGAAAGTTCTGATACCATCGACAATGTAAAGGCCAAGATCCAAGACA
261 GACCATCACCCTGGAAGTGGAAAGCTCTGACACAATCGACAATGTAAAGGCCAAAATCCAAGACA
* * * * *
15627542 AAGAAGGGATCCCACCAGACCAGCAGAGGCTTATCTTTGCTGGTAAACAACTGGAGGATGGCCGT
326 AAGAAGGGATCCCACCAGACCAGCAGAGGCTGATATTTGCTGGTAAACAACTAGAGGATGGCAGG
* * *
15627607 ACCCTTGCTGACTACAACATCCAGAAGGAATCCACACTCCATTTGGTCCTCCGATTGAGGGGTGG
391 ACCCTTGCAGACTACAACATCCAGAAGGAATCCACACTCCACTTGGTCCTCCGATTCAGGGGTGG
* * * * * * *
15627672 TATGCAAATTTTTGTCAAGACCCTCACCGGAAAGACCATCACATTGGAGGTGGAGAGTTCTGATA
456 GATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACACTGGAAGTGGAGAGCTCAGACA
* * *
15627737 CGATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGCATCCCCCCAGACCAGCAAAGGCTG
521 CGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTG
* * * * *
15627802 ATCTTCGCTGGTAAGCAACTTGAGGATGGCCGCACATTGGCTGATTACAACATCCAGAAGGAGTC
586 ATCTTCGCTGGGAAGCAACTTGAAGATGGCAGCACATTGGCAGATTACAACATCCAGAAGGAATC
* *
15627867 CACACTCCACTTGGTGCTTCGCCTCCGTGGAGGA
651 CACACTCCACCTGGTCCTTCGCCTCCGTGGAGGA
* * ** * * * *
15627901 ATGCAAATTTTTGTTAAGACTTTGACTGGGAAGACCATTA-CATTGGAGGTAGAGAGTTCAGATA
1 ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCATT-GAGGTAGAAAGTTCAGATA
* * * * * *
15627965 CCATTGACAATGTTAAGGCAAAAATTCAGGACAAGG-AGGGAATCCCCCCAGACCAACAGAGGCT
65 CCATCGACAATGTAAAGACAAAAATCCAAGACAAGGAAGGG-ATCCCACCAGACCAACAGAGGCT
* * * * *
15628029 GATTTTTGCTGGTAAGCAACTGGAGGATGGCCGTACCCTGGCTGACTATAATATCCAGAAGGAGT
129 GATCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTGGCTGACTACAACATCCAGAAGGAAT
* * * ** * * * *
15628094 CCACCCTCCACTTGGTGCTTCG-TCTTCGTGGTGGTATGCAGATTTTTGTGAAGACACTTACCGG
194 CCACACTCCACTTGGTCCTCCGAT-TGAGGGGTGGTATGCAAATTTTTGTCAAGACACTCACCGG
* * * * *
15628158 GAAGACCATCACCCTGGAAGTTGAGAGCTCTGACACAATCGATAATGTTAAGGCCAAAATTCAAG
258 GAAGACCATCACCCTGGAAGTGGAAAGCTCTGACACAATCGACAATGTAAAGGCCAAAATCCAAG
* * * * *
15628223 ATAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTGATATTTGCTGG-AAAGCAGCTAGAGGATGG
323 ACAAAGAAGGGATCCCACCAGACCAGCAGAGGCTGATATTTGCTGGTAAA-CAACTAGAGGATGG
* * * * * * *
15628287 GAGGACCCTTGCAGATTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTTCTCCG-TCTCCGT
387 CAGGACCCTTGCAGACTACAACATCCAGAAGGAATCCACACTCCACTTGGTCCTCCGAT-TCAGG
* * * * *
15628351 GGTGGGATGCAAATTTTCGTGAAGACCCTGACTGGAAAGACCATCACCCTGGAAGTTGAGAGCTC
451 GGTGGGATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACACTGGAAGTGGAGAGCTC
* * * *
15628416 AGACACGATTGATAATGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCACCAGACCAGCAGA
516 AGACACGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAAA
* * * * *
15628481 GGCTGATTTTTGCTGGGAAGCAACTTGAAGATGGGAGGACCCTT-GCAGATTACAACATCCAGAA
581 GGCTGATCTTCGCTGGGAAGCAACTTGAAGATGGCAGCA-CATTGGCAGATTACAACATCCAGAA
** *
15628545 GGAATCCACTTTGCACCTGGTCCTTCGCCTCCG
645 GGAATCCACACTCCACCTGGTCCTTCGCCTCCG
15628578 CGGTGGCTTT
Statistics
Matches: 568, Mismatches: 103, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
683 12 0.02
684 553 0.97
685 3 0.01
ACGTcount: A:0.29, C:0.24, G:0.25, T:0.22
Consensus pattern (684 bp):
ATGCAAATTTTCGTCAAGACCCTCACTGGCAAGACCATCACCATTGAGGTAGAAAGTTCAGATAC
CATCGACAATGTAAAGACAAAAATCCAAGACAAGGAAGGGATCCCACCAGACCAACAGAGGCTGA
TCTTTGCTGGTAAACAACTGGAGGATGGCCGTACCCTGGCTGACTACAACATCCAGAAGGAATCC
ACACTCCACTTGGTCCTCCGATTGAGGGGTGGTATGCAAATTTTTGTCAAGACACTCACCGGGAA
GACCATCACCCTGGAAGTGGAAAGCTCTGACACAATCGACAATGTAAAGGCCAAAATCCAAGACA
AAGAAGGGATCCCACCAGACCAGCAGAGGCTGATATTTGCTGGTAAACAACTAGAGGATGGCAGG
ACCCTTGCAGACTACAACATCCAGAAGGAATCCACACTCCACTTGGTCCTCCGATTCAGGGGTGG
GATGCAAATTTTCGTCAAGACCCTCACCGGAAAGACCATCACACTGGAAGTGGAGAGCTCAGACA
CGATTGACAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAGCAAAGGCTG
ATCTTCGCTGGGAAGCAACTTGAAGATGGCAGCACATTGGCAGATTACAACATCCAGAAGGAATC
CACACTCCACCTGGTCCTTCGCCTCCGTGGAGGA
Found at i:15631308 original size:17 final size:15
Alignment explanation
Indices: 15631290--15631326 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
15631280 ATATATATAT
*
15631290 ATATTAAATATGCAG
1 ATATAAAATATGCAG
15631305 ATATAAAATATGCAG
1 ATATAAAATATGCAG
*
15631320 ATGTAAA
1 ATATAAA
15631327 TGTATAGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.51, C:0.05, G:0.14, T:0.30
Consensus pattern (15 bp):
ATATAAAATATGCAG
Found at i:15634018 original size:18 final size:18
Alignment explanation
Indices: 15633976--15634018 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
15633966 AAATTTAAAG
*
15633976 ATTAAAATAAAAAAATGG
1 ATTAAAATAAAAAAATGC
** *
15633994 AAGAAAATAAAACAATGC
1 ATTAAAATAAAAAAATGC
15634012 ATTAAAA
1 ATTAAAA
15634019 AATTTGTTAT
Statistics
Matches: 19, Mismatches: 6, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.67, C:0.05, G:0.09, T:0.19
Consensus pattern (18 bp):
ATTAAAATAAAAAAATGC
Found at i:15636379 original size:338 final size:338
Alignment explanation
Indices: 15635763--15636440 Score: 1356
Period size: 338 Copynumber: 2.0 Consensus size: 338
15635753 GCTTTTTTTT
15635763 TTTAATAAACTTGTTAGTTGATTCTTTGATGATATCTGTGATCAAGTTGCAGTATTTTGCATGGA
1 TTTAATAAACTTGTTAGTTGATTCTTTGATGATATCTGTGATCAAGTTGCAGTATTTTGCATGGA
15635828 TTCAACATTTTGTTTTTTTATTTTATTTTAATTCTATTTCGTATTCTACTTCTTGGAGGAAGTCA
66 TTCAACATTTTGTTTTTTTATTTTATTTTAATTCTATTTCGTATTCTACTTCTTGGAGGAAGTCA
15635893 GAAGATCAAATCGTTAATTCGAAACTTAAAGACTTTAATCTTCTAGGCCGAATCTTGGTTATCGC
131 GAAGATCAAATCGTTAATTCGAAACTTAAAGACTTTAATCTTCTAGGCCGAATCTTGGTTATCGC
15635958 GAGCAAGTTTCCGTCTTGTTAGGTTTATATGGTTCTTGTGTTTTGTACAGCCTATGGTTTTGAAT
196 GAGCAAGTTTCCGTCTTGTTAGGTTTATATGGTTCTTGTGTTTTGTACAGCCTATGGTTTTGAAT
15636023 TTACAATTATTGGATGCCTAATTCTTTTATTTACTTCTTGTTTATGCGAGATTTGTGAGGTTTTT
261 TTACAATTATTGGATGCCTAATTCTTTTATTTACTTCTTGTTTATGCGAGATTTGTGAGGTTTTT
15636088 GTTTATTGATTAA
326 GTTTATTGATTAA
15636101 TTTAATAAACTTGTTAGTTGATTCTTTGATGATATCTGTGATCAAGTTGCAGTATTTTGCATGGA
1 TTTAATAAACTTGTTAGTTGATTCTTTGATGATATCTGTGATCAAGTTGCAGTATTTTGCATGGA
15636166 TTCAACATTTTGTTTTTTTATTTTATTTTAATTCTATTTCGTATTCTACTTCTTGGAGGAAGTCA
66 TTCAACATTTTGTTTTTTTATTTTATTTTAATTCTATTTCGTATTCTACTTCTTGGAGGAAGTCA
15636231 GAAGATCAAATCGTTAATTCGAAACTTAAAGACTTTAATCTTCTAGGCCGAATCTTGGTTATCGC
131 GAAGATCAAATCGTTAATTCGAAACTTAAAGACTTTAATCTTCTAGGCCGAATCTTGGTTATCGC
15636296 GAGCAAGTTTCCGTCTTGTTAGGTTTATATGGTTCTTGTGTTTTGTACAGCCTATGGTTTTGAAT
196 GAGCAAGTTTCCGTCTTGTTAGGTTTATATGGTTCTTGTGTTTTGTACAGCCTATGGTTTTGAAT
15636361 TTACAATTATTGGATGCCTAATTCTTTTATTTACTTCTTGTTTATGCGAGATTTGTGAGGTTTTT
261 TTACAATTATTGGATGCCTAATTCTTTTATTTACTTCTTGTTTATGCGAGATTTGTGAGGTTTTT
15636426 GTTTATTGATTAA
326 GTTTATTGATTAA
15636439 TT
1 TT
15636441 AGTTGATGAG
Statistics
Matches: 340, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
338 340 1.00
ACGTcount: A:0.24, C:0.12, G:0.18, T:0.47
Consensus pattern (338 bp):
TTTAATAAACTTGTTAGTTGATTCTTTGATGATATCTGTGATCAAGTTGCAGTATTTTGCATGGA
TTCAACATTTTGTTTTTTTATTTTATTTTAATTCTATTTCGTATTCTACTTCTTGGAGGAAGTCA
GAAGATCAAATCGTTAATTCGAAACTTAAAGACTTTAATCTTCTAGGCCGAATCTTGGTTATCGC
GAGCAAGTTTCCGTCTTGTTAGGTTTATATGGTTCTTGTGTTTTGTACAGCCTATGGTTTTGAAT
TTACAATTATTGGATGCCTAATTCTTTTATTTACTTCTTGTTTATGCGAGATTTGTGAGGTTTTT
GTTTATTGATTAA
Found at i:15642211 original size:23 final size:23
Alignment explanation
Indices: 15642185--15642275 Score: 130
Period size: 23 Copynumber: 4.0 Consensus size: 23
15642175 GTGTTATTGA
*
15642185 TCAGTGGTAGCTTCGACTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
15642208 TCAGTGGTAGCTACGGCTACATT
1 TCAGTGGTAGCTTCGGCTACATT
*
15642231 ACAGTGGTAGCTTCGGCTACATAT
1 TCAGTGGTAGCTTCGGCTACAT-T
*
15642255 T-AGTGGTAGCTTTGGCTACAT
1 TCAGTGGTAGCTTCGGCTACAT
15642276 ATCGGTGTGG
Statistics
Matches: 61, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
23 60 0.98
24 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.25, T:0.33
Consensus pattern (23 bp):
TCAGTGGTAGCTTCGGCTACATT
Found at i:15646754 original size:24 final size:24
Alignment explanation
Indices: 15646697--15646744 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
15646687 TATAGTTGCT
* *
15646697 GATGCTTTGAGCAGAAAGTCTATC
1 GATGCTTTGAGAAGAAACTCTATC
15646721 GATGCTTTGAGAAGAAACTCTATC
1 GATGCTTTGAGAAGAAACTCTATC
15646745 TTTTCTTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29
Consensus pattern (24 bp):
GATGCTTTGAGAAGAAACTCTATC
Found at i:15649232 original size:18 final size:18
Alignment explanation
Indices: 15649209--15649244 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
15649199 AGGAAATTGT
15649209 TCATGAATTATTCAAGTG
1 TCATGAATTATTCAAGTG
15649227 TCATGAATTATTCAAGTG
1 TCATGAATTATTCAAGTG
15649245 ATAAAGTGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (18 bp):
TCATGAATTATTCAAGTG
Found at i:15649466 original size:23 final size:23
Alignment explanation
Indices: 15649440--15649536 Score: 117
Period size: 23 Copynumber: 4.2 Consensus size: 23
15649430 TGTTATTGAC
* *
15649440 CAGTGGTAGCTTAGGTTACATTT
1 CAGTGGTAGCTTAGGCTACATAT
15649463 CAGTGGTAGC-TACGGCTACAT-T
1 CAGTGGTAGCTTA-GGCTACATAT
*
15649485 ACAGTGGTAGCTTTGGCTACATAT
1 -CAGTGGTAGCTTAGGCTACATAT
* *
15649509 CAGTGGTAGTTTTGGCTACATAT
1 CAGTGGTAGCTTAGGCTACATAT
15649532 CAGTG
1 CAGTG
15649537 TGGCACTTAT
Statistics
Matches: 67, Mismatches: 3, Indels: 8
0.86 0.04 0.10
Matches are distributed among these distances:
22 3 0.04
23 62 0.93
24 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.27, T:0.34
Consensus pattern (23 bp):
CAGTGGTAGCTTAGGCTACATAT
Found at i:15649786 original size:23 final size:25
Alignment explanation
Indices: 15649740--15649787 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
15649730 GAAATTGCTA
* *
15649740 AGAAATGTTTGATTAGTTATATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
15649765 AGAAATG-TTAATT-GTTAAATGAG
1 AGAAATGTTTAATTAGTTAAATGAG
15649788 TATTTATAGT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 9 0.43
24 5 0.24
25 7 0.33
ACGTcount: A:0.40, C:0.00, G:0.23, T:0.38
Consensus pattern (25 bp):
AGAAATGTTTAATTAGTTAAATGAG
Found at i:15652803 original size:5 final size:5
Alignment explanation
Indices: 15652784--15652837 Score: 62
Period size: 5 Copynumber: 11.4 Consensus size: 5
15652774 TTAGTTTATT
*
15652784 TAATA T-ATAA TAATA TAATA TAAT- TATTA TAATA TAATA TAATA T-AT-
1 TAATA TAAT-A TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA
15652831 TAATA TA
1 TAATA TA
15652838 TTTAAAACAT
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
3 1 0.02
4 9 0.21
5 30 0.71
6 2 0.05
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (5 bp):
TAATA
Found at i:15652817 original size:19 final size:20
Alignment explanation
Indices: 15652784--15652832 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
15652774 TTAGTTTATT
*
15652784 TAATATATAATAATATAATA
1 TAATATATTATAATATAATA
15652804 TAAT-TATTATAATATAATA
1 TAATATATTATAATATAATA
15652823 TAATATATTA
1 TAATATATTA
15652833 ATATATTTAA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
19 18 0.67
20 9 0.33
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (20 bp):
TAATATATTATAATATAATA
Found at i:15652820 original size:24 final size:23
Alignment explanation
Indices: 15652783--15652837 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 23
15652773 TTTAGTTTAT
15652783 TTAATAT-ATAATAATATAATATAA
1 TTAATATAAT-ATAATATAATAT-A
*
15652807 TTATTATAATATAATATAATATA
1 TTAATATAATATAATATAATATA
15652830 TTAATATA
1 TTAATATA
15652838 TTTAAAACAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 8 0.29
24 18 0.64
25 2 0.07
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
TTAATATAATATAATATAATATA
Found at i:15670627 original size:20 final size:23
Alignment explanation
Indices: 15670583--15670627 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 23
15670573 TGATAACATG
15670583 TTTTGATATAACAAATTAAAATGT
1 TTTTGATATAACAAATT-AAATGT
15670607 TTTTGA-ATAA-AAATT-AATGT
1 TTTTGATATAACAAATTAAATGT
15670627 T
1 T
15670628 GAAAAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
20 6 0.29
22 5 0.24
23 4 0.19
24 6 0.29
ACGTcount: A:0.44, C:0.02, G:0.09, T:0.44
Consensus pattern (23 bp):
TTTTGATATAACAAATTAAATGT
Found at i:15676609 original size:3 final size:3
Alignment explanation
Indices: 15676601--15676635 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15676591 TAATTAGTTA
15676601 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15676636 AAGGATAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15682595 original size:3 final size:3
Alignment explanation
Indices: 15682587--15682621 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
15682577 TAATTAGTTA
15682587 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
15682622 AAGGATAGAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:15683492 original size:18 final size:17
Alignment explanation
Indices: 15683464--15683506 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
15683454 TCGTAAATCT
15683464 ACTTCAAAAAAATTTTG
1 ACTTCAAAAAAATTTTG
15683481 ACTTCAAAAAAATTTTG
1 ACTTCAAAAAAATTTTG
*
15683498 GCTTCAAAA
1 ACTTCAAAA
15683507 TAAAATCTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.47, C:0.14, G:0.07, T:0.33
Consensus pattern (17 bp):
ACTTCAAAAAAATTTTG
Found at i:15684652 original size:23 final size:23
Alignment explanation
Indices: 15684606--15684653 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
15684596 AATGAAAAAT
15684606 AAAGAAAAAAAGAAAGAAAGTTA
1 AAAGAAAAAAAGAAAGAAAGTTA
15684629 AAAGAACAGAAAAGAAA-AAA-TTA
1 AAAGAA-A-AAAAGAAAGAAAGTTA
15684652 AA
1 AA
15684654 TTACTCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 11 0.48
24 4 0.17
25 8 0.35
ACGTcount: A:0.75, C:0.02, G:0.15, T:0.08
Consensus pattern (23 bp):
AAAGAAAAAAAGAAAGAAAGTTA
Found at i:15688832 original size:5 final size:5
Alignment explanation
Indices: 15688822--15688846 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
15688812 AAATAAATGC
15688822 ATAAA ATAAA ATAAA ATAAA ATAAA
1 ATAAA ATAAA ATAAA ATAAA ATAAA
15688847 TAATAAGCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:15690166 original size:19 final size:16
Alignment explanation
Indices: 15690128--15690169 Score: 50
Period size: 15 Copynumber: 2.5 Consensus size: 16
15690118 TAAGTTTAAT
15690128 TTTAATTAAATAATAG
1 TTTAATTAAATAATAG
15690144 -TTAATTAAATTAATTATG
1 TTTAATTAAA-TAA-TA-G
15690162 TTTAATTA
1 TTTAATTA
15690170 TGTTTTGAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 9 0.41
16 3 0.14
17 2 0.09
18 1 0.05
19 7 0.32
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.50
Consensus pattern (16 bp):
TTTAATTAAATAATAG
Found at i:15691080 original size:23 final size:24
Alignment explanation
Indices: 15691050--15691094 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
15691040 TATGTATGAA
**
15691050 ATGATATTTTGATTGAT-GAATTG
1 ATGATATTGAGATTGATAGAATTG
15691073 ATGATATTGAGATTGATAGAAT
1 ATGATATTGAGATTGATAGAAT
15691095 GAGAATCAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 15 0.79
24 4 0.21
ACGTcount: A:0.36, C:0.00, G:0.22, T:0.42
Consensus pattern (24 bp):
ATGATATTGAGATTGATAGAATTG
Found at i:15699858 original size:29 final size:30
Alignment explanation
Indices: 15699807--15699864 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 30
15699797 ATGTTGGTTG
*
15699807 TGATTTTGATTTTTGCTGTTAATGGTGTTC
1 TGATTTTGATTTTTGCTGTTAATGCTGTTC
15699837 TGATTTTGA-TTTTGCTGTTAATGCTGTT
1 TGATTTTGATTTTTGCTGTTAATGCTGTT
15699865 AATGGTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
29 18 0.67
30 9 0.33
ACGTcount: A:0.14, C:0.07, G:0.22, T:0.57
Consensus pattern (30 bp):
TGATTTTGATTTTTGCTGTTAATGCTGTTC
Found at i:15699865 original size:38 final size:38
Alignment explanation
Indices: 15699820--15699939 Score: 172
Period size: 38 Copynumber: 3.2 Consensus size: 38
15699810 TTTTGATTTT
*
15699820 TGCTGTTAATGGTGTTCTGATTTTGATTTTGCTGTTAA
1 TGCTGTTAATGGTGTTATGATTTTGATTTTGCTGTTAA
15699858 TGCTGTTAATGGTGTTATGATTTTGATTTTGCTGTTAA
1 TGCTGTTAATGGTGTTATGATTTTGATTTTGCTGTTAA
* * *
15699896 TGCTGTTAAT-G-GTTGTGTTTTTTATTTTTGCTGTTAA
1 TGCTGTTAATGGTGTTATGATTTTGA-TTTTGCTGTTAA
*
15699933 TGGTGTT
1 TGCTGTT
15699940 CTGTTAATGG
Statistics
Matches: 76, Mismatches: 5, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
36 10 0.13
37 19 0.25
38 47 0.62
ACGTcount: A:0.15, C:0.06, G:0.24, T:0.55
Consensus pattern (38 bp):
TGCTGTTAATGGTGTTATGATTTTGATTTTGCTGTTAA
Found at i:15699916 original size:29 final size:29
Alignment explanation
Indices: 15699858--15699917 Score: 75
Period size: 29 Copynumber: 2.0 Consensus size: 29
15699848 TTGCTGTTAA
* *
15699858 TGCTGTTAATGGTGTTATGATTTTGATTT
1 TGCTGTTAATGCTGTTATGATTGTGATTT
* *
15699887 TGCTGTTAATGCTGTTAATGGTTGTGTTTT
1 TGCTGTTAATGCTGTT-ATGATTGTGATTT
15699917 T
1 T
15699918 TATTTTTGCT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 15 0.58
30 11 0.42
ACGTcount: A:0.15, C:0.05, G:0.25, T:0.55
Consensus pattern (29 bp):
TGCTGTTAATGCTGTTATGATTGTGATTT
Found at i:15701240 original size:15 final size:15
Alignment explanation
Indices: 15701220--15701252 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
15701210 AAATATAGAT
*
15701220 TTAATTTGTAACACA
1 TTAATTTCTAACACA
15701235 TTAATTTCTAACACA
1 TTAATTTCTAACACA
15701250 TTA
1 TTA
15701253 TAATATGTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.39, C:0.15, G:0.03, T:0.42
Consensus pattern (15 bp):
TTAATTTCTAACACA
Found at i:15702056 original size:25 final size:25
Alignment explanation
Indices: 15702022--15702069 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
15702012 TTAATATTTG
15702022 ATTGTTTGTAATTAAATTCAAATTA
1 ATTGTTTGTAATTAAATTCAAATTA
15702047 ATTGTTTGTAATTAAATTCAAAT
1 ATTGTTTGTAATTAAATTCAAAT
15702070 AAGTAATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.04, G:0.08, T:0.48
Consensus pattern (25 bp):
ATTGTTTGTAATTAAATTCAAATTA
Found at i:15702161 original size:16 final size:16
Alignment explanation
Indices: 15702140--15702173 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
15702130 ATATAAATTC
15702140 AATAACAATTAATTTT
1 AATAACAATTAATTTT
*
15702156 AATAACAATTAGTTTT
1 AATAACAATTAATTTT
15702172 AA
1 AA
15702174 CTTTTAAGTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.50, C:0.06, G:0.03, T:0.41
Consensus pattern (16 bp):
AATAACAATTAATTTT
Found at i:15704683 original size:40 final size:40
Alignment explanation
Indices: 15704630--15704708 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
15704620 ATGTCAGGGG
*
15704630 ACGTGGCAGAAAATCGCGTCCCT-GAGGGCGCGCTTTGCTT
1 ACGTGGCAGAAAATCGC-TCCCTCAAGGGCGCGCTTTGCTT
*
15704670 ACGTGG-ACGAAAATCGCTCCCTCAAGGGCGCGTTTTGCT
1 ACGTGGCA-GAAAATCGCTCCCTCAAGGGCGCGCTTTGCT
15704709 GCCACGTAAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
39 6 0.17
40 29 0.83
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.23
Consensus pattern (40 bp):
ACGTGGCAGAAAATCGCTCCCTCAAGGGCGCGCTTTGCTT
Found at i:15704783 original size:21 final size:22
Alignment explanation
Indices: 15704757--15704799 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
15704747 TTCTCCCCAC
*
15704757 GTTA-GGTTTTGGATTTTTAGG
1 GTTAGGGTTTAGGATTTTTAGG
15704778 GTTAGGGTTTAGGATTTTTAGG
1 GTTAGGGTTTAGGATTTTTAGG
15704800 ATTTTTAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.16, C:0.00, G:0.35, T:0.49
Consensus pattern (22 bp):
GTTAGGGTTTAGGATTTTTAGG
Found at i:15705230 original size:124 final size:124
Alignment explanation
Indices: 15704969--15705379 Score: 592
Period size: 124 Copynumber: 3.3 Consensus size: 124
15704959 ATTTATTAAG
* * **
15704969 GAAATCGCTCTCACGAGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTTGAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
15705034 GTTTATGAGCAAATAGTATAAAAAACGCTTGAAGCAGGATGCTTTATCAA-AAGAATTTCT
66 GTTTATGAGCAAATAGTAT-AAAAACGCTTGAAGCAGGATGCTTTAT-AAGAAGAATTTCT
* *
15705094 GAAATCGCTCCCACGTGGACGCGATTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAA
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
* * * * * *
15705159 ATTTCTGAGTAAATTGTATAAAAACGCTTGAAGTAGGATGCTTTATTAGAAGAATTTCT
66 GTTTATGAGCAAATAGTATAAAAACGCTTGAAGCAGGATGCTTTATAAGAAGAATTTCT
* * *
15705218 GAAATCGCTCCCACGTAGATGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCTAGTTGAC
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
* * * * *
15705283 GTTTTTGTGCAAATAGTATAAAAATGCTTCAAGCAAGATGCTTTATAAGAA-AATTTTCT
66 GTTTATGAGCAAATAGTATAAAAACGCTTGAAGCAGGATGCTTTATAAGAAGAA-TTTCT
*
15705342 GAAATCGCTCCCACGTGGACGCGTTTTTGCTACAGTAG
1 GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAG
15705380 CATGTTTGGG
Statistics
Matches: 254, Mismatches: 30, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
123 3 0.01
124 177 0.70
125 74 0.29
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.31
Consensus pattern (124 bp):
GAAATCGCTCCCACGTGGACGCGCTTTTGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAC
GTTTATGAGCAAATAGTATAAAAACGCTTGAAGCAGGATGCTTTATAAGAAGAATTTCT
Found at i:15706262 original size:248 final size:248
Alignment explanation
Indices: 15705824--15710298 Score: 8941
Period size: 248 Copynumber: 18.0 Consensus size: 248
15705814 GATGTACTTG
15705824 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15705889 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15705954 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15706019 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15706072 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15706137 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15706202 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15706267 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15706320 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15706385 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15706450 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15706515 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15706568 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15706633 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15706698 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15706763 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15706816 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15706881 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15706946 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15707011 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15707064 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15707129 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15707194 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15707259 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15707312 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15707377 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15707442 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15707507 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15707560 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15707625 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15707690 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15707755 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15707808 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15707873 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15707938 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15708003 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15708056 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15708121 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15708186 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15708251 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15708304 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15708369 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15708434 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15708499 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15708552 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15708617 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15708682 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15708747 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15708800 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15708865 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15708930 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15708995 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15709048 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15709113 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15709178 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15709243 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15709296 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15709361 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15709426 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15709491 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15709544 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15709609 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15709674 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15709739 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15709792 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15709857 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15709922 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
15709987 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15710040 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
1 TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
15710105 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
66 TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
15710170 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
131 AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
*
15710235 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGTTTT
196 CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
15710288 TGCTACAGTAG
1 TGCTACAGTAG
15710299 CATGTTTGGG
Statistics
Matches: 4226, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
248 4226 1.00
ACGTcount: A:0.33, C:0.15, G:0.19, T:0.32
Consensus pattern (248 bp):
TGCTACAGTAGGTCCTGAAAAAATAATTTCAAGTTGAAATTTCTGAGTAAATTGTATAAAAACGC
TTGAAGTAGGATGCTTTATTAGAAGAATTTCTGAAATCGCTCCCACGTAGATGCGCTTTTGCTAC
AGTAGGTCCTGAAAAAATAATTTCTAGTTGACGTTTTTGTGCAAATAGTATAAAAATGCTTCAAG
CAAGATGCTTTATAAGAAAATTTTCTGAAATCGCTCCCACGTGGACGCGATTT
Found at i:15713614 original size:49 final size:49
Alignment explanation
Indices: 15713496--15713616 Score: 188
Period size: 49 Copynumber: 2.5 Consensus size: 49
15713486 TAAGAATATT
* * * *
15713496 AACTATTTTATATTTTATTAAATGAAATAATATCAAAATATTGAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
* *
15713545 AACTATTATGTATTTTATTACATCAAATAATATCAAATTATTCAAAATA
1 AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
15713594 AACTATTTTGTATTTTATTACAT
1 AACTATTTTGTATTTTATTACAT
15713617 TAATATAAAC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 65 1.00
ACGTcount: A:0.45, C:0.07, G:0.03, T:0.44
Consensus pattern (49 bp):
AACTATTTTGTATTTTATTACATCAAATAATATCAAAATATTCAAAATA
Found at i:15717220 original size:107 final size:108
Alignment explanation
Indices: 15717121--15717460 Score: 398
Period size: 107 Copynumber: 3.3 Consensus size: 108
15717111 GTCAATGGCC
* * *
15717121 GGTACCAGAATACGAGAAAAAGTATAAAAAAAAATT-GTGGTGGCCTGCCAATGGCCGACACCAC
1 GGTATCAGTATACGA-AAAAAGT-TAAAAAAAAATTGGTGGTGACCTGCCAATGGCCGACACCAC
15717185 CTTTTTTGTGGGAA-TTTTTTTTTAC-TTTTTCCTGTCAAAAGAA
64 CTTTTTTGTGGGAATTTTTTTTTTACATTTTTCCTGTCAAAAGAA
* * *
15717228 GGTATTAGTATACGAAAAAAGTTAAAAAAAATTTTGGTGGTGACCTGCCAATGGCCGGCACCACC
1 GGTATCAGTATACGAAAAAAGTTAAAAAAAA-ATTGGTGGTGACCTGCCAATGGCCGACACCACC
*
15717293 TTTTTTGTGGGAATTTTTTTTTTACATTTTTCGTGTCAAAAGAA
65 TTTTTTGTGGGAATTTTTTTTTTACATTTTTCCTGTCAAAAGAA
*
15717337 GGTATCAGTATATGAAAAAAG-TAAAAAAAAATTGGTGGTG---T-CC--T----G---CCACCT
1 GGTATCAGTATACGAAAAAAGTTAAAAAAAAATTGGTGGTGACCTGCCAATGGCCGACACCACCT
* * *
15717388 TTTTTGTGGG-ATTTTT-TTTTAC-TTTTGTCGTGTCAATAGCA
66 TTTTTGTGGGAATTTTTTTTTTACATTTT-TCCTGTCAAAAGAA
15717429 GGTATCAGTATACGAAAAAAG-TAAAAAAAAAT
1 GGTATCAGTATACGAAAAAAGTTAAAAAAAAAT
15717461 CTCACAAAAA
Statistics
Matches: 215, Mismatches: 13, Indels: 25
0.85 0.05 0.10
Matches are distributed among these distances:
91 4 0.02
92 49 0.23
93 6 0.03
94 16 0.07
97 1 0.00
101 1 0.00
103 2 0.01
104 1 0.00
105 9 0.04
106 9 0.04
107 61 0.28
108 20 0.09
109 36 0.17
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (108 bp):
GGTATCAGTATACGAAAAAAGTTAAAAAAAAATTGGTGGTGACCTGCCAATGGCCGACACCACCT
TTTTTGTGGGAATTTTTTTTTTACATTTTTCCTGTCAAAAGAA
Found at i:15717432 original size:92 final size:94
Alignment explanation
Indices: 15717288--15717460 Score: 289
Period size: 92 Copynumber: 1.9 Consensus size: 94
15717278 ATGGCCGGCA
*
15717288 CCACCTTTTTTGTGGGAATTTTTTTTTTACATTTTTCGTGTCAAAAGAAGGTATCAGTATATGAA
1 CCACCTTTTTTGTGGGAATTTTTTTTTTACATTTTTCGTGTCAAAAGAAGGTATCAGTATACGAA
15717353 AAAAGTAAAAAAAAATTGGTGGTGTCCTG
66 AAAAGTAAAAAAAAATTGGTGGTGTCCTG
* *
15717382 CCACCTTTTTTGTGGG-A-TTTTTTTTTAC-TTTTGTCGTGTCAATAGCAGGTATCAGTATACGA
1 CCACCTTTTTTGTGGGAATTTTTTTTTTACATTTT-TCGTGTCAAAAGAAGGTATCAGTATACGA
15717444 AAAAAGTAAAAAAAAAT
65 AAAAAGTAAAAAAAAAT
15717461 CTCACAAAAA
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
91 4 0.05
92 54 0.72
93 1 0.01
94 16 0.21
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.38
Consensus pattern (94 bp):
CCACCTTTTTTGTGGGAATTTTTTTTTTACATTTTTCGTGTCAAAAGAAGGTATCAGTATACGAA
AAAAGTAAAAAAAAATTGGTGGTGTCCTG
Found at i:15717554 original size:110 final size:112
Alignment explanation
Indices: 15717440--15717651 Score: 358
Period size: 111 Copynumber: 1.9 Consensus size: 112
15717430 GTATCAGTAT
*
15717440 ACGAAAAAAGTAAAAAAAAA-TCTCACAAAAAAGGTGGTG-CTGGCCATTGGCAGGCCACCACCA
1 ACGAAAAAAGTAAAAAAAAATTCCCACAAAAAAGGTGGTGTC-GGCCATTGGCAGGCCACCACCA
* *
15717503 AAAAAAACTTTTTTAACTTTTT-TCGTATACTGATACCTTCTTTTGAC
65 AAAAAAAATTTTTAAACTTTTTCTCGTATACTGATACCTTCTTTTGAC
15717550 ACGAAAAAAGTAAAAAAAAATTCCCACAAAAAAGGTGGTGTCGGCCATTGGCAGGCCACCACCAA
1 ACGAAAAAAGTAAAAAAAAATTCCCACAAAAAAGGTGGTGTCGGCCATTGGCAGGCCACCACCAA
*
15717615 AAAAAAATTTTTAAACTTTTTCTCGTATTCTGATACC
66 AAAAAAATTTTTAAACTTTTTCTCGTATACTGATACC
15717652 GGCTATTAAC
Statistics
Matches: 95, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
110 20 0.21
111 60 0.63
112 15 0.16
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (112 bp):
ACGAAAAAAGTAAAAAAAAATTCCCACAAAAAAGGTGGTGTCGGCCATTGGCAGGCCACCACCAA
AAAAAAATTTTTAAACTTTTTCTCGTATACTGATACCTTCTTTTGAC
Found at i:15717710 original size:111 final size:111
Alignment explanation
Indices: 15717440--15717684 Score: 325
Period size: 111 Copynumber: 2.2 Consensus size: 111
15717430 GTATCAGTAT
* *
15717440 ACGAAAAAAGTAAAAAAAAA-TCTCACAAAAAAGGTGGTGCTGGCCATTGGCAGGCCACCACCAA
1 ACGAAAAAACTAAAAAAAAATTCCCACAAAAAAGGTGGTGCTGGCCATTGGCAGGCCACCACCAA
* * ** * *
15717504 AAAAAACTTTTTTAACTTTTTTCGTATACTGATACCTTCTTTTGAC
66 AAAAAAATTTTTAAACTTTTTTCGTATACTGATACCGGCTATTAAC
*
15717550 ACGAAAAAAGTAAAAAAAAATTCCCACAAAAAAGGTGGTG-TCGGCCATTGGCAGGCCACCACCA
1 ACGAAAAAACTAAAAAAAAATTCCCACAAAAAAGGTGGTGCT-GGCCATTGGCAGGCCACCACCA
*
15717614 AAAAAAAATTTTTAAACTTTTTCTCGTATTCTGATACCGGCTATTAAC
65 AAAAAAAATTTTTAAACTTTTT-TCGTATACTGATACCGGCTATTAAC
* *
15717662 A-GACCAAAACTCGAAAAAAAATT
1 ACGA-AAAAACT-AAAAAAAAATT
15717685 TTCGTGTACA
Statistics
Matches: 119, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
110 21 0.18
111 62 0.52
112 26 0.22
113 10 0.08
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.24
Consensus pattern (111 bp):
ACGAAAAAACTAAAAAAAAATTCCCACAAAAAAGGTGGTGCTGGCCATTGGCAGGCCACCACCAA
AAAAAAATTTTTAAACTTTTTTCGTATACTGATACCGGCTATTAAC
Found at i:15720045 original size:33 final size:33
Alignment explanation
Indices: 15720008--15720079 Score: 76
Period size: 33 Copynumber: 2.2 Consensus size: 33
15719998 TTTTATATAC
* * *
15720008 ATTTTTAT-ACTCTATAATT-TATATGCATTTCTT
1 ATTTTTATAACT-TAAAATTATACATGCA-TTCAT
*
15720041 ATTTTCATAACTTAAAATTATACATGCATTCAT
1 ATTTTTATAACTTAAAATTATACATGCATTCAT
15720074 ATTTTT
1 ATTTTT
15720080 TTTACATAAT
Statistics
Matches: 32, Mismatches: 5, Indels: 4
0.78 0.12 0.10
Matches are distributed among these distances:
33 22 0.69
34 10 0.31
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (33 bp):
ATTTTTATAACTTAAAATTATACATGCATTCAT
Found at i:15722166 original size:12 final size:12
Alignment explanation
Indices: 15722149--15722173 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
15722139 TTACATTTCA
15722149 TTGCATGCATCT
1 TTGCATGCATCT
15722161 TTGCATGCATCT
1 TTGCATGCATCT
15722173 T
1 T
15722174 AAAGAGATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.44
Consensus pattern (12 bp):
TTGCATGCATCT
Found at i:15722425 original size:314 final size:313
Alignment explanation
Indices: 15721856--15722475 Score: 1186
Period size: 314 Copynumber: 2.0 Consensus size: 313
15721846 ACGCCAACTT
*
15721856 TCTTAAAGAGATCAATGAGCATCACGAGGATTAGTGGTCAATGGGTCACGGCTCGGATCAAGCAA
1 TCTTAAAGAGATCAATGAGCATCACGAGGATTAGTGATCAATGGGTCACGGCTCGGATCAAGCAA
*
15721921 AAAGGAGATAGAGGAGGTGCCCCTTTGAAGAGTTTTTGAGATTCAATCTTAACATATGGATTTGA
66 AAAGGAGATAGAGGAGGTGCCCCTTTGAAGAGTTTTCGAGATTCAATCTTAACATATGGATTTGA
15721986 GGAGAATGGATCGATGTCTTTACTTCGAGTATTAGGACAAGGTCGTATATAAATATCCGTTTTAT
131 GGAGAATGGATCGATGTCTTTACTTCGAGTATTAGGACAAGGTCGTATATAAATATCCGTTTTAT
15722051 GTAAAGAGATTTATTTTCTAGTAAAGTTGTTCAAATAGAATTGAATCAATATCAATGCCTCTTTT
196 GTAAAGAGATTTATTTTCTAGTAAAGTTGTTCAAATAGAATTGAATCAATATCAATGCCTCTTTT
15722116 TGCATTCATGCATCTACATTACATTACATTTCATTGCATGCATCTTTGCATGCA
261 TGCATTCATGCATC-ACATTACATTACATTTCATTGCATGCATCTTTGCATGCA
15722170 TCTTAAAGAGATCAATGAGCATCACGAGGATTAGTGATCAATGGGTCACGGCTCGGATCAAGCAA
1 TCTTAAAGAGATCAATGAGCATCACGAGGATTAGTGATCAATGGGTCACGGCTCGGATCAAGCAA
15722235 AAAGGAGATAGAGGAGGTGCCCCTTTGAAGAGTTTTCGAGATTCAATCTTAACATATGGATTTGA
66 AAAGGAGATAGAGGAGGTGCCCCTTTGAAGAGTTTTCGAGATTCAATCTTAACATATGGATTTGA
15722300 GGAGAATGGATCGATGTCTTTACTTCGAGTATTAGGACAAGGTCGTATATAAATATCCGTTTTAT
131 GGAGAATGGATCGATGTCTTTACTTCGAGTATTAGGACAAGGTCGTATATAAATATCCGTTTTAT
* *
15722365 GTAAAGAGATTTATTTTCTAGTAAATTTGTTCTAATAGAATTGAATCAATATCAATGCCTCTTTT
196 GTAAAGAGATTTATTTTCTAGTAAAGTTGTTCAAATAGAATTGAATCAATATCAATGCCTCTTTT
*
15722430 TGCATTCATGCATCATATTACATTACATTTCATTGCATGCATCTTT
261 TGCATTCATGCATCACATTACATTACATTTCATTGCATGCATCTTT
15722476 TCATTCATTA
Statistics
Matches: 301, Mismatches: 5, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
313 31 0.10
314 270 0.90
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (313 bp):
TCTTAAAGAGATCAATGAGCATCACGAGGATTAGTGATCAATGGGTCACGGCTCGGATCAAGCAA
AAAGGAGATAGAGGAGGTGCCCCTTTGAAGAGTTTTCGAGATTCAATCTTAACATATGGATTTGA
GGAGAATGGATCGATGTCTTTACTTCGAGTATTAGGACAAGGTCGTATATAAATATCCGTTTTAT
GTAAAGAGATTTATTTTCTAGTAAAGTTGTTCAAATAGAATTGAATCAATATCAATGCCTCTTTT
TGCATTCATGCATCACATTACATTACATTTCATTGCATGCATCTTTGCATGCA
Found at i:15724097 original size:18 final size:18
Alignment explanation
Indices: 15724061--15724100 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
15724051 TTAGCAATGC
**
15724061 TTTTATCGCAAAAGTATT
1 TTTTATCGCAAAAACATT
*
15724079 TTTTGTCGCAAAAACATT
1 TTTTATCGCAAAAACATT
15724097 TTTT
1 TTTT
15724101 TAGCCAAAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.30, C:0.12, G:0.10, T:0.47
Consensus pattern (18 bp):
TTTTATCGCAAAAACATT
Found at i:15724805 original size:28 final size:28
Alignment explanation
Indices: 15724753--15724808 Score: 87
Period size: 28 Copynumber: 2.0 Consensus size: 28
15724743 TTATAACTTT
*
15724753 TTTTATTTACCAAAATATTATAAAAAAA
1 TTTTATTTACCAAAATATTACAAAAAAA
15724781 TTTTATTTACCAAAATA-TACCAAAAAAA
1 TTTTATTTACCAAAATATTA-CAAAAAAA
15724809 CAAAAAACAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
27 2 0.08
28 24 0.92
ACGTcount: A:0.54, C:0.11, G:0.00, T:0.36
Consensus pattern (28 bp):
TTTTATTTACCAAAATATTACAAAAAAA
Found at i:15724885 original size:27 final size:27
Alignment explanation
Indices: 15724855--15724933 Score: 131
Period size: 27 Copynumber: 2.9 Consensus size: 27
15724845 GGCCAATCAC
*
15724855 ATTGGCGGCACCAAAGGTGCCAAAGAG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
* *
15724882 ATTGGCGGCACCAATGGTGCCAATGTG
1 ATTGGCGGCACCAATGGTGCCAAAGAG
15724909 ATTGGCGGCACCAATGGTGCCAAAG
1 ATTGGCGGCACCAATGGTGCCAAAG
15724934 GACTAAAATG
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.28, C:0.23, G:0.33, T:0.16
Consensus pattern (27 bp):
ATTGGCGGCACCAATGGTGCCAAAGAG
Found at i:15725259 original size:19 final size:19
Alignment explanation
Indices: 15725235--15725293 Score: 84
Period size: 19 Copynumber: 3.2 Consensus size: 19
15725225 TCTAATTAAG
*
15725235 TAATAACTCTATTTTAATT
1 TAATAACTCTATTTTCATT
* *
15725254 TAATAA-ACTATTCTCATT
1 TAATAACTCTATTTTCATT
15725272 TAATAACTCTATTTTCATT
1 TAATAACTCTATTTTCATT
15725291 TAA
1 TAA
15725294 AATATAAAAT
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
18 15 0.44
19 19 0.56
ACGTcount: A:0.37, C:0.14, G:0.00, T:0.49
Consensus pattern (19 bp):
TAATAACTCTATTTTCATT
Found at i:15725544 original size:29 final size:29
Alignment explanation
Indices: 15725479--15725573 Score: 122
Period size: 29 Copynumber: 3.3 Consensus size: 29
15725469 TAAGGGAATA
* *
15725479 TATTAAA-TTTATAAAATTAAAATAG-TT
1 TATTAAATTTTATTAAATTAAAATAGAGT
* *
15725506 TAATTTAATTTTTTTAAATTAAAATAGAGT
1 T-ATTAAATTTTATTAAATTAAAATAGAGT
*
15725536 TATTAAATTTTATTACATTAAAATAGAGT
1 TATTAAATTTTATTAAATTAAAATAGAGT
15725565 TATTAAATT
1 TATTAAATT
15725574 AAACTATTTT
Statistics
Matches: 58, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
27 1 0.02
28 5 0.09
29 50 0.86
30 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.47
Consensus pattern (29 bp):
TATTAAATTTTATTAAATTAAAATAGAGT
Found at i:15725585 original size:29 final size:29
Alignment explanation
Indices: 15725523--15725579 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
15725513 ATTTTTTTAA
** *
15725523 ATTAAAATAGAGTTATTAAATTTTATTAC
1 ATTAAAATAGAGTTATTAAATTAAACTAC
15725552 ATTAAAATAGAGTTATTAAATTAAACTA
1 ATTAAAATAGAGTTATTAAATTAAACTA
15725580 TTTTAATTTT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.49, C:0.04, G:0.07, T:0.40
Consensus pattern (29 bp):
ATTAAAATAGAGTTATTAAATTAAACTAC
Found at i:15725973 original size:27 final size:27
Alignment explanation
Indices: 15725889--15725974 Score: 109
Period size: 27 Copynumber: 3.2 Consensus size: 27
15725879 TTTTAGTCCT
* * *
15725889 TTGGTACCATTGGTGCCACCAATCACA
1 TTGGCACCATTGGTGCCGCCAATCTCA
*
15725916 TTGGCACCATTGGTGCCGCCAATCTCT
1 TTGGCACCATTGGTGCCGCCAATCTCA
* * *
15725943 TTGGCACCTTTGGTGCCGCCAATGTGA
1 TTGGCACCATTGGTGCCGCCAATCTCA
15725970 TTGGC
1 TTGGC
15725975 CTGATCAGGC
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 51 1.00
ACGTcount: A:0.17, C:0.29, G:0.24, T:0.29
Consensus pattern (27 bp):
TTGGCACCATTGGTGCCGCCAATCTCA
Found at i:15726042 original size:26 final size:27
Alignment explanation
Indices: 15726006--15726073 Score: 113
Period size: 27 Copynumber: 2.6 Consensus size: 27
15725996 TTTCTGTTTT
15726006 TTTAT-ATATTTTGGTAAAT-AAAAAA
1 TTTATAATATTTTGGTAAATAAAAAAA
15726031 TTTATAATATTTTGGTAAATAAAAAAA
1 TTTATAATATTTTGGTAAATAAAAAAA
*
15726058 GTTATAATATTTTGGT
1 TTTATAATATTTTGGT
15726074 TATTTTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
25 5 0.12
26 14 0.35
27 21 0.52
ACGTcount: A:0.44, C:0.00, G:0.10, T:0.46
Consensus pattern (27 bp):
TTTATAATATTTTGGTAAATAAAAAAA
Found at i:15726578 original size:22 final size:23
Alignment explanation
Indices: 15726548--15726596 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 23
15726538 CCAAAGTTCT
*
15726548 TTTTTTTTCT-CTGTTCT-TTTTA
1 TTTTGTTTCTACT-TTCTGTTTTA
*
15726570 TTTTGTTTCTACTTTCTGTTTTT
1 TTTTGTTTCTACTTTCTGTTTTA
15726593 TTTT
1 TTTT
15726597 TTGTTTATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
22 13 0.57
23 10 0.43
ACGTcount: A:0.04, C:0.12, G:0.06, T:0.78
Consensus pattern (23 bp):
TTTTGTTTCTACTTTCTGTTTTA
Found at i:15727424 original size:15 final size:16
Alignment explanation
Indices: 15727404--15727460 Score: 64
Period size: 15 Copynumber: 3.6 Consensus size: 16
15727394 CTTTTATTAT
15727404 TTATTATTACTA-TTA
1 TTATTATTACTACTTA
*
15727419 TTATTATTATTACTTA
1 TTATTATTACTACTTA
*
15727435 -TATTATTGCTACTTA
1 TTATTATTACTACTTA
15727450 TCATATTATTA
1 T--TATTATTA
15727461 TATAATAGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
15 24 0.71
16 3 0.09
18 7 0.21
ACGTcount: A:0.32, C:0.09, G:0.02, T:0.58
Consensus pattern (16 bp):
TTATTATTACTACTTA
Found at i:15727427 original size:18 final size:17
Alignment explanation
Indices: 15727396--15727441 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 17
15727386 ATTATCATCT
15727396 TTTATTATTTATTATTAC
1 TTTATTA-TTATTATTAC
15727414 TATTATTATTATTATTAC
1 T-TTATTATTATTATTAC
15727432 TTATATTATT
1 TT-TATTATT
15727442 GCTACTTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
17 1 0.04
18 19 0.73
19 6 0.23
ACGTcount: A:0.30, C:0.04, G:0.00, T:0.65
Consensus pattern (17 bp):
TTTATTATTATTATTAC
Found at i:15727461 original size:3 final size:3
Alignment explanation
Indices: 15727397--15727441 Score: 56
Period size: 3 Copynumber: 14.7 Consensus size: 3
15727387 TTATCATCTT
*
15727397 TTA TTA TTTA TTA TTA CTA TTA TTA TTA TTA TTA CTTA -TA TTA TT
1 TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
15727442 GCTACTTATC
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
2 2 0.05
3 29 0.78
4 6 0.16
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Done.