Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 55 of 163
Found at i:17772250 original size:50 final size:49
Alignment explanation
Indices: 17772112--17772298 Score: 133
Period size: 56 Copynumber: 3.6 Consensus size: 49
17772102 CTGTACTGCA
* * ** * * *
17772112 AACGCCATATCCCAGATATGGTCTTACATGAGAGTTCTTATATCGGTGGC
1 AACGCCATGTCCCAGACATGGTCTTACATG-GACCTCTCATCTCGGTGCC
* * * * **
17772162 -ATGTCATGTCCCAAACATTGTCTTACGGGGGGACCTCTCATCTCGGTGCC
1 AACGCCATGTCCCAGACATGGTCTTAC--ATGGACCTCTCATCTCGGTGCC
**
17772212 AACGCCATGTCCCAGACATGGTCTTACATCGGACCTCTCATAACCTCAATAATGCC
1 AACGCCATGTCCCAGACATGGTCTTACAT-GGACCTCTCAT---CTC---GGTGCC
*
17772268 AATGCCATGTCCCAGACATGGTCTTACATGG
1 AACGCCATGTCCCAGACATGGTCTTACATGG
17772299 GAACTCATTC
Statistics
Matches: 105, Mismatches: 22, Indels: 15
0.74 0.15 0.11
Matches are distributed among these distances:
49 20 0.19
50 25 0.24
51 23 0.22
53 3 0.03
55 2 0.02
56 32 0.30
ACGTcount: A:0.25, C:0.28, G:0.20, T:0.27
Consensus pattern (49 bp):
AACGCCATGTCCCAGACATGGTCTTACATGGACCTCTCATCTCGGTGCC
Found at i:17779535 original size:20 final size:20
Alignment explanation
Indices: 17779500--17779548 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
17779490 ATCATGGTCT
*
17779500 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
17779519 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
17779539 TTGCTTACTT
1 TTGCTTACTT
17779549 AAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:17781724 original size:19 final size:19
Alignment explanation
Indices: 17781700--17781737 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
17781690 GAACGAAGGA
* *
17781700 GCCTCGTTAGTCAGAGTCT
1 GCCTCGTCAGTCAAAGTCT
17781719 GCCTCGTCAGTCAAAGTCT
1 GCCTCGTCAGTCAAAGTCT
17781738 TGTTTACAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.18, C:0.29, G:0.24, T:0.29
Consensus pattern (19 bp):
GCCTCGTCAGTCAAAGTCT
Found at i:17791648 original size:112 final size:111
Alignment explanation
Indices: 17791505--17791740 Score: 375
Period size: 112 Copynumber: 2.1 Consensus size: 111
17791495 AAATGGCTTA
* *
17791505 TTTTATATAATTTGAATATATTATATTTTTTAAGACATAAAGTAGGTCATGTATGACTAAATTAA
1 TTTTATATAATTTGAATATATTATATTTTTTAAGACATAAAGTAGGCCATGCATGACTAAATTAA
*
17791570 ATAATAAAATATAAAATTATATTTAATAATTCATTTTAAAATATTT
66 ATAATAAAATATAAAATTATATTTAATAATTAATTTTAAAATATTT
* * *
17791616 TTTTATATTAATTTGAATATATTATATTTTTTAAGATATAAAGTGGGCCATGCATGATTAAATTA
1 TTTTATA-TAATTTGAATATATTATATTTTTTAAGACATAAAGTAGGCCATGCATGACTAAATTA
*
17791681 AATAATAAAATATAAAATTATATTTAGTAATTAATTTTAAAATATTT
65 AATAATAAAATATAAAATTATATTTAATAATTAATTTTAAAATATTT
**
17791728 CATTA-ATAATTTG
1 TTTTATATAATTTG
17791741 GGTTTTTAAT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
110 7 0.06
111 8 0.07
112 100 0.87
ACGTcount: A:0.44, C:0.03, G:0.07, T:0.45
Consensus pattern (111 bp):
TTTTATATAATTTGAATATATTATATTTTTTAAGACATAAAGTAGGCCATGCATGACTAAATTAA
ATAATAAAATATAAAATTATATTTAATAATTAATTTTAAAATATTT
Found at i:17793543 original size:27 final size:27
Alignment explanation
Indices: 17793463--17793981 Score: 526
Period size: 27 Copynumber: 19.3 Consensus size: 27
17793453 GTGAGGTCAA
* **
17793463 TAAAATGACAGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
** * **
17793490 T-AAATGACAAAAATATCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
17793516 TAAAGTGACCGAAATACCCCCATCGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
17793543 TAAAATGA-CGAAAATACCCCCACAAGG
1 TAAAATGACCG-AAATACCCCCATAGGG
* *
17793570 TAAAATGACTGAAATACCCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * * * **
17793597 TAAAATTAGCAAAATAGCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* **
17793624 TAAAATGACCAAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
** *
17793651 TAAAATGATTGAAATACCCCCATAGAG
1 TAAAATGACCGAAATACCCCCATAGGG
** * *
17793678 TAAAATGATTGAAATACCCCTAAAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
17793705 TAAAATGACCAAAATACCCCTATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
** * *
17793732 TAAAATGATTGAAATAACCCCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* *
17793759 TAAAATGACGGAAATACCCTCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
**
17793786 TAAAATGACCGAAATACCCCTGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
17793813 TAAAATGACCAAAATACCCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
17793840 TAAAATGATCGAAATA-ACCCAGTAAGG
1 TAAAATGACCGAAATACCCCCA-TAGGG
17793867 TAAAATGACCGAAATA-CCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
17793893 TAAAATGACTGAAATACCCCCGTAAGG
1 TAAAATGACCGAAATACCCCCATAGGG
* * *
17793920 TAAAATGACTGAAATACCCTCGTAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
*
17793947 TAAAAGGACCGAAATA-CCCCATAGGG
1 TAAAATGACCGAAATACCCCCATAGGG
17793973 TAAAATGAC
1 TAAAATGAC
17793982 TGTTATACCC
Statistics
Matches: 413, Mismatches: 74, Indels: 11
0.83 0.15 0.02
Matches are distributed among these distances:
26 65 0.16
27 347 0.84
28 1 0.00
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCCCATAGGG
Found at i:17795536 original size:13 final size:13
Alignment explanation
Indices: 17795518--17795545 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
17795508 TTGACCCGAT
17795518 TTGTGTGATTAAA
1 TTGTGTGATTAAA
17795531 TTGTGTGATTAAA
1 TTGTGTGATTAAA
17795544 TT
1 TT
17795546 CTTTCAAACC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.21, T:0.50
Consensus pattern (13 bp):
TTGTGTGATTAAA
Found at i:17800367 original size:50 final size:50
Alignment explanation
Indices: 17800175--17800366 Score: 233
Period size: 50 Copynumber: 3.8 Consensus size: 50
17800165 TTTCTTGTAC
* * * * * ** *
17800175 TGCCAATGCCATATCCAAGATATGGTCTTACATGAGAGTTCTCATATAGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
* * *
17800225 TGCCCATGCCATGTCCCAGACATGGTCTTACGA-GGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTAC-ATGGGACCTCTCATCTAGG
* * * *
17800275 TGCTAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTTATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
17800325 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCT
17800367 TCCAATGCCA
Statistics
Matches: 123, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
49 1 0.01
50 121 0.98
51 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTAGG
Found at i:17807132 original size:50 final size:50
Alignment explanation
Indices: 17807063--17807247 Score: 208
Period size: 50 Copynumber: 3.6 Consensus size: 50
17807053 TCTTGTTCTA
* **
17807063 CCAATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTG
* *
17807113 CCAACGCCGTGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGGTG
1 CCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTG
** * * *
17807163 CCAACGCCATGTCATAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATG
1 CCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTC---ATCTC---GGTG
* *
17807219 CCAATGCCATGTCCCAGACATGATCTTAC
1 CCAACGCCATGTCCCAGACATGGTCTTAC
17807248 GTGGATTCTC
Statistics
Matches: 115, Mismatches: 14, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
50 82 0.71
53 5 0.04
56 28 0.24
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (50 bp):
CCAACGCCATGTCCCAGACATGGTCTTACAGGGGACCTCTCATCTCGGTG
Found at i:17830291 original size:27 final size:27
Alignment explanation
Indices: 17830242--17830902 Score: 491
Period size: 27 Copynumber: 24.6 Consensus size: 27
17830232 CTCAATATTT
* *
17830242 GTAAAATAACTGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
17830269 ATAGAATGACCGTAATACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
17830296 GTACAATGATCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
17830323 GTAAAATGACCATAATACCCGTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
17830350 GTAAAATGACTGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
17830377 GTAACATAACCGTAATACGCCTGAT-GG
1 GTAAAATGACCGTAATACCCCT-ATAGG
** *
17830404 GTAAAATGACCAAAATACCCTCAAT-GG
1 GTAAAATGACCGTAATACCC-CTATAGG
*** * *
17830431 GTAAAATGACTAAAATA-CCTTGAT-TG
1 GTAAAATGACCGTAATACCCCT-ATAGG
* *
17830457 GTAAAATGACCGAAATACCCTCGAT-GG
1 GTAAAATGACCGTAATACCC-CTATAGG
* ** *
17830484 GTCAAAA-GATCAAAATACCCTCGAT-GG
1 GT-AAAATGACCGTAATACCC-CTATAGG
* ** * *
17830511 GTCAAATGACCAAAATACCGTCGAT-GG
1 GTAAAATGACCGTAATACC-CCTATAGG
** *
17830538 GTAAAATGACCAAAATACCCTCAAT-GG
1 GTAAAATGACCGTAATACCC-CTATAGG
* * * * *
17830565 ATAAAATGACTGAAATGCCCCCATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* **
17830592 GTAAAATAACCAAAATACACCC-ATAGG
1 GTAAAATGACCGTAATAC-CCCTATAGG
* * *
17830619 GTAGAAT-ATCGAAATACCCC-ATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * * *
17830644 GTAAAATTATCGTAATACCCTTGTAAG
1 GTAAAATGACCGTAATACCCCTATAGG
*
17830671 GTAAAATGACCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
17830698 ATAAAATGACCGTAATGCCCTTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* * *
17830725 GTAAAATGACCGTAATACCTCTGTAGA
1 GTAAAATGACCGTAATACCCCTATAGG
* *
17830752 GTAAAATAACCGTAACACCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
* *
17830779 GTAAAATGATCGTAATACCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
*
17830806 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATACCCCTATAGG
** ** *
17830833 GTAAAATGACCGTAATATGCCTGGAAG
1 GTAAAATGACCGTAATACCCCTATAGG
* * * *
17830860 GTAAATTAACCGTAATGCCCCTGTAGG
1 GTAAAATGACCGTAATACCCCTATAGG
17830887 GTAAAATGACCGTAAT
1 GTAAAATGACCGTAAT
17830903 GCCCTGGTGG
Statistics
Matches: 519, Mismatches: 102, Indels: 26
0.80 0.16 0.04
Matches are distributed among these distances:
25 14 0.03
26 45 0.09
27 451 0.87
28 9 0.02
ACGTcount: A:0.38, C:0.20, G:0.19, T:0.23
Consensus pattern (27 bp):
GTAAAATGACCGTAATACCCCTATAGG
Found at i:17830502 original size:80 final size:81
Alignment explanation
Indices: 17830375--17830609 Score: 262
Period size: 80 Copynumber: 2.9 Consensus size: 81
17830365 TACCCCTGTA
* * *
17830375 GGGTAACATAACCGTAATACGCCT-GATGGGTAAAATGACCAAAATACCCTCAATGGGTAAAATG
1 GGGTAAAATGACCGAAATAC-CCTCGATGGGTAAAATGACCAAAATACCCTCAATGGGTAAAATG
* *
17830439 ACTAAAATACC-TTGAT
65 ACCAAAATACCGTCGAT
* * * *
17830455 TGGTAAAATGACCGAAATACCCTCGATGGGTCAAAA-GATCAAAATACCCTCGATGGGTCAAATG
1 GGGTAAAATGACCGAAATACCCTCGATGGGT-AAAATGACCAAAATACCCTCAATGGGTAAAATG
17830519 ACCAAAATACCGTCGAT
65 ACCAAAATACCGTCGAT
* * * ** * * *
17830536 GGGTAAAATGACCAAAATACCCTCAATGGATAAAATGACTGAAATGCCC-CCATAGGGTAAAATA
1 GGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGACCAAAATACCCTCAAT-GGGTAAAATG
17830600 ACCAAAATAC
65 ACCAAAATAC
17830610 ACCCATAGGG
Statistics
Matches: 130, Mismatches: 20, Indels: 9
0.82 0.13 0.06
Matches are distributed among these distances:
79 3 0.02
80 65 0.50
81 62 0.48
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.20
Consensus pattern (81 bp):
GGGTAAAATGACCGAAATACCCTCGATGGGTAAAATGACCAAAATACCCTCAATGGGTAAAATGA
CCAAAATACCGTCGAT
Found at i:17831018 original size:24 final size:24
Alignment explanation
Indices: 17830966--17831020 Score: 76
Period size: 24 Copynumber: 2.3 Consensus size: 24
17830956 TCTGTGGGTA
17830966 AATGACTGATTTGTCTGTGTTTGG
1 AATGACTGATTTGTCTGTGTTTGG
* *
17830990 TATGACTGATTTGTCTTTGATTT-G
1 AATGACTGATTTGTCTGTG-TTTGG
17831014 AATGACT
1 AATGACT
17831021 AATTCTGAGC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
24 24 0.89
25 3 0.11
ACGTcount: A:0.20, C:0.09, G:0.24, T:0.47
Consensus pattern (24 bp):
AATGACTGATTTGTCTGTGTTTGG
Found at i:17831115 original size:27 final size:27
Alignment explanation
Indices: 17831079--17831141 Score: 94
Period size: 27 Copynumber: 2.4 Consensus size: 27
17831069 GCGGAGGAAG
*
17831079 TACTA-TACTGGTGGCTTTGCCACA-A
1 TACTATTACTGGTGGCTTGGCCACATA
17831104 TCACTATTACTGGTGGCTTGGCCACATA
1 T-ACTATTACTGGTGGCTTGGCCACATA
17831132 TACTATTACT
1 TACTATTACT
17831142 AGCAGCTTTG
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
25 1 0.03
26 4 0.12
27 27 0.79
28 2 0.06
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (27 bp):
TACTATTACTGGTGGCTTGGCCACATA
Found at i:17831149 original size:27 final size:27
Alignment explanation
Indices: 17831092--17831149 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
17831082 TATACTGGTG
* * **
17831092 GCTTTGCCACAATCACTATTACTGGTG
1 GCTTGGCCACAATCACTATTACTAGCA
17831119 GCTTGGCCACATAT-ACTATTACTAGCA
1 GCTTGGCCACA-ATCACTATTACTAGCA
17831146 GCTT
1 GCTT
17831150 TGCTGCGATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (27 bp):
GCTTGGCCACAATCACTATTACTAGCA
Found at i:17831168 original size:14 final size:14
Alignment explanation
Indices: 17831149--17831194 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
17831139 ACTAGCAGCT
17831149 TTGCTGCGATACTG
1 TTGCTGCGATACTG
*
17831163 TTGCTG-GCA-GCT-
1 TTGCTGCG-ATACTG
17831175 TTGCTGCGATACTG
1 TTGCTGCGATACTG
17831189 TTGCTG
1 TTGCTG
17831195 GCAGCTTTGC
Statistics
Matches: 26, Mismatches: 2, Indels: 8
0.72 0.06 0.22
Matches are distributed among these distances:
12 7 0.27
13 6 0.23
14 13 0.50
ACGTcount: A:0.11, C:0.22, G:0.30, T:0.37
Consensus pattern (14 bp):
TTGCTGCGATACTG
Found at i:17831172 original size:26 final size:26
Alignment explanation
Indices: 17831143--17831210 Score: 136
Period size: 26 Copynumber: 2.6 Consensus size: 26
17831133 ACTATTACTA
17831143 GCAGCTTTGCTGCGATACTGTTGCTG
1 GCAGCTTTGCTGCGATACTGTTGCTG
17831169 GCAGCTTTGCTGCGATACTGTTGCTG
1 GCAGCTTTGCTGCGATACTGTTGCTG
17831195 GCAGCTTTGCTGCGAT
1 GCAGCTTTGCTGCGAT
17831211 GCTACTGATG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 42 1.00
ACGTcount: A:0.12, C:0.24, G:0.31, T:0.34
Consensus pattern (26 bp):
GCAGCTTTGCTGCGATACTGTTGCTG
Found at i:17831261 original size:32 final size:32
Alignment explanation
Indices: 17831225--17831325 Score: 175
Period size: 32 Copynumber: 3.2 Consensus size: 32
17831215 CTGATGGTCG
*
17831225 TGTGCCGATCATACTACCGTTACTGATGGCTT
1 TGTGCCGATCATAGTACCGTTACTGATGGCTT
*
17831257 TGTGCCGATCATAGTACCGTTAGTGATGGCTT
1 TGTGCCGATCATAGTACCGTTACTGATGGCTT
*
17831289 TGTGCCGATCATAGTACTGTTACTGATGGCTT
1 TGTGCCGATCATAGTACCGTTACTGATGGCTT
17831321 TGTGC
1 TGTGC
17831326 TGATTATATT
Statistics
Matches: 65, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 65 1.00
ACGTcount: A:0.18, C:0.21, G:0.26, T:0.36
Consensus pattern (32 bp):
TGTGCCGATCATAGTACCGTTACTGATGGCTT
Found at i:17831349 original size:32 final size:32
Alignment explanation
Indices: 17831225--17831357 Score: 139
Period size: 32 Copynumber: 4.2 Consensus size: 32
17831215 CTGATGGTCG
* *
17831225 TGTGCCGATCATACTACCGTTA-CTGATGGCTT
1 TGTGCCGATCATAGTACTGTTATC-GATGGCTT
*
17831257 TGTGCCGATCATAGTACCGTTAGT-GATGGCTT
1 TGTGCCGATCATAGTACTGTTA-TCGATGGCTT
17831289 TGTGCCGATCATAGTACTGTTA-CTGATGGCTT
1 TGTGCCGATCATAGTACTGTTATC-GATGGCTT
* * * *
17831321 TGTGCTGATTATATTACTATTATCGATGG-TT
1 TGTGCCGATCATAGTACTGTTATCGATGGCTT
17831352 CTGTGC
1 -TGTGC
17831358 AGGGTCATTT
Statistics
Matches: 89, Mismatches: 6, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
31 2 0.02
32 86 0.97
33 1 0.01
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (32 bp):
TGTGCCGATCATAGTACTGTTATCGATGGCTT
Found at i:17831349 original size:64 final size:64
Alignment explanation
Indices: 17831216--17831357 Score: 173
Period size: 64 Copynumber: 2.2 Consensus size: 64
17831206 GCGATGCTAC
*
17831216 TGATGG-TCGTGTGCCGATCATACTACCGTTACTGATGGCTTTGTGCCGATCATAGTACCGTTAG
1 TGATGGTTC-TGTGCCGATCATACTACCGTTACTGATGGCTTTGTGCCGATCATAGTACCATTAG
* * * * * *
17831280 TGATGGCTT-TGTGCCGATCATAGTACTGTTACTGATGGCTTTGTGCTGATTATATTACTATTA-
1 TGATGG-TTCTGTGCCGATCATACTACCGTTACTGATGGCTTTGTGCCGATCATAGTACCATTAG
17831343 TCGATGGTTCTGTGC
1 T-GATGGTTCTGTGC
17831358 AGGGTCATTT
Statistics
Matches: 67, Mismatches: 7, Indels: 8
0.82 0.09 0.10
Matches are distributed among these distances:
63 3 0.04
64 63 0.94
66 1 0.01
ACGTcount: A:0.18, C:0.18, G:0.25, T:0.38
Consensus pattern (64 bp):
TGATGGTTCTGTGCCGATCATACTACCGTTACTGATGGCTTTGTGCCGATCATAGTACCATTAG
Found at i:17836624 original size:20 final size:20
Alignment explanation
Indices: 17836568--17836635 Score: 55
Period size: 20 Copynumber: 3.4 Consensus size: 20
17836558 TGTACTTCGA
* *
17836568 TACCCCTGAATGCACATAAG
1 TACCCTTGAATGCACTTAAG
** * **
17836588 TACCCTTGTTTGTACTTTGG
1 TACCCTTGAATGCACTTAAG
*
17836608 TACCCTTGAATGCACTTACG
1 TACCCTTGAATGCACTTAAG
*
17836628 TGCCCTTG
1 TACCCTTG
17836636 TTTATACTCC
Statistics
Matches: 35, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.21, C:0.28, G:0.18, T:0.34
Consensus pattern (20 bp):
TACCCTTGAATGCACTTAAG
Found at i:17836628 original size:80 final size:80
Alignment explanation
Indices: 17836454--17836632 Score: 234
Period size: 80 Copynumber: 2.2 Consensus size: 80
17836444 AATTATTGAA
* * * * **
17836454 TGAATGCACATACGTACCCCTGATTGTACTTCGGTACCCCTGAATGCACATACGTGCTTTTACTT
1 TGAATGCACATACGTGCCCCTGATTGTACTTCGATACCCCTGAATGCACATAAGTACCCTTACTT
17836519 GCACTTCGGTACCCT
66 GCACTTCGGTACCCT
* **
17836534 TAAATGC-CGATACGTGCCCCTGATTGTACTTCGATACCCCTGAATGCACATAAGTACCCTTGTT
1 TGAATGCAC-ATACGTGCCCCTGATTGTACTTCGATACCCCTGAATGCACATAAGTACCCTTACT
* *
17836598 TGTACTTTGGTACCCT
65 TGCACTTCGGTACCCT
*
17836614 TGAATGCACTTACGTGCCC
1 TGAATGCACATACGTGCCC
17836633 TTGTTTATAC
Statistics
Matches: 84, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
79 1 0.01
80 82 0.98
81 1 0.01
ACGTcount: A:0.22, C:0.29, G:0.18, T:0.31
Consensus pattern (80 bp):
TGAATGCACATACGTGCCCCTGATTGTACTTCGATACCCCTGAATGCACATAAGTACCCTTACTT
GCACTTCGGTACCCT
Found at i:17836638 original size:40 final size:40
Alignment explanation
Indices: 17836454--17836635 Score: 197
Period size: 40 Copynumber: 4.5 Consensus size: 40
17836444 AATTATTGAA
* *
17836454 TGAATGCACATACGTACCCCTGATTGTACTTCGGTACCCC
1 TGAATGCACATACGTGCCCTTGATTGTACTTCGGTACCCC
* * * *
17836494 TGAATGCACATACGTG-CTTTTACTTGCACTTCGGTACCCT
1 TGAATGCACATACGTGCCCTTGA-TTGTACTTCGGTACCCC
* * *
17836534 TAAATGC-CGATACGTGCCCCTGATTGTACTTCGATACCCC
1 TGAATGCAC-ATACGTGCCCTTGATTGTACTTCGGTACCCC
* * * * *
17836574 TGAATGCACATAAGTACCCTTGTTTGTACTTTGGTACCCT
1 TGAATGCACATACGTGCCCTTGATTGTACTTCGGTACCCC
*
17836614 TGAATGCACTTACGTGCCCTTG
1 TGAATGCACATACGTGCCCTTG
17836636 TTTATACTCC
Statistics
Matches: 114, Mismatches: 24, Indels: 8
0.78 0.16 0.05
Matches are distributed among these distances:
39 4 0.04
40 106 0.93
41 4 0.04
ACGTcount: A:0.21, C:0.29, G:0.18, T:0.32
Consensus pattern (40 bp):
TGAATGCACATACGTGCCCTTGATTGTACTTCGGTACCCC
Found at i:17857525 original size:27 final size:27
Alignment explanation
Indices: 17857492--17857545 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
17857482 GTAACAAAAT
*
17857492 AGAACAATGTGGGCTTTAGCCCAATAC
1 AGAACAAGGTGGGCTTTAGCCCAATAC
*
17857519 AGAACAAGGTGGGCTTTAGCCCTATAC
1 AGAACAAGGTGGGCTTTAGCCCAATAC
17857546 CATATCAATA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.22
Consensus pattern (27 bp):
AGAACAAGGTGGGCTTTAGCCCAATAC
Found at i:17859774 original size:27 final size:27
Alignment explanation
Indices: 17859733--17859788 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
17859723 CAGTATCAGA
*
17859733 ACAGAACAATATGGGCTTTAGCCCAAT
1 ACAGAACAAGATGGGCTTTAGCCCAAT
*
17859760 ACAGAACAAGGTGGGCTTTAGCCCAAT
1 ACAGAACAAGATGGGCTTTAGCCCAAT
17859787 AC
1 AC
17859789 CATATCAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.20
Consensus pattern (27 bp):
ACAGAACAAGATGGGCTTTAGCCCAAT
Found at i:17862259 original size:27 final size:26
Alignment explanation
Indices: 17862224--17862294 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
17862214 TGGGCCAAAA
* *
17862224 CCCACTACAATATCATTTGGGTTATAG
1 CCCATTACAATATCATTTGGG-CATAG
* * *
17862251 CTCATTACAGA-ATCAATTGGGCCTAG
1 CCCATTACA-ATATCATTTGGGCATAG
17862277 CCCATTCACAATATCATT
1 CCCATT-ACAATATCATT
17862295 AATAACTGGG
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
26 9 0.26
27 24 0.71
28 1 0.03
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (26 bp):
CCCATTACAATATCATTTGGGCATAG
Found at i:17862367 original size:27 final size:27
Alignment explanation
Indices: 17862327--17862382 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
17862317 CAGTAACAGA
* *
17862327 ACAGAACAATGTGGGCTTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
17862354 ACAGAACAAGGTGGGCCTTAGCCCAAT
1 ACAGAACAAGGTGGGCCTTAGCCCAAT
17862381 AC
1 AC
17862383 CATATCAGTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.34, C:0.25, G:0.23, T:0.18
Consensus pattern (27 bp):
ACAGAACAAGGTGGGCCTTAGCCCAAT
Found at i:17863894 original size:50 final size:50
Alignment explanation
Indices: 17863831--17864065 Score: 425
Period size: 50 Copynumber: 4.7 Consensus size: 50
17863821 TCATTTGATA
17863831 CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
* *
17863881 CACGTAGTAGCCTTCACATAGTACTGCACACGTGATCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
*
17863931 CACGTAGTAGCCTTCACATAGTACTACACACGTGACCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
*
17863981 CATGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
*
17864031 CACGTAGTAGCCTTCACATAATACTACACACGTGA
1 CACGTAGTAGCCTTCACATAGTACTACACACGTGA
17864066 NNNNNNNNNN
Statistics
Matches: 177, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 177 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.28
Consensus pattern (50 bp):
CACGTAGTAGCCTTCACATAGTACTACACACGTGAGCAAGTTTTACGGTT
Found at i:17865890 original size:11 final size:12
Alignment explanation
Indices: 17865862--17865895 Score: 52
Period size: 11 Copynumber: 2.8 Consensus size: 12
17865852 GCCCAAATGT
17865862 CGAAATTTTTGAA
1 CGAAATTTTT-AA
17865875 CGAAATTTTT-A
1 CGAAATTTTTAA
17865886 CGAAATTTTT
1 CGAAATTTTT
17865896 CCCTGAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
13 10 0.48
ACGTcount: A:0.35, C:0.09, G:0.12, T:0.44
Consensus pattern (12 bp):
CGAAATTTTTAA
Found at i:17870316 original size:40 final size:40
Alignment explanation
Indices: 17870258--17870377 Score: 150
Period size: 40 Copynumber: 3.0 Consensus size: 40
17870248 TTGTTGAATA
* *
17870258 TTTGCACATACGTTCCCCTAATTGTACTTCGGTACCCCTG
1 TTTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * *
17870298 TTTGCACATATGTGCCCCTGTTTGTACTTCGATACCCCTC
1 TTTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
* * * *
17870338 TTTGCACATACATGCCCCTGATTGTATTTCAGTATCCCTG
1 TTTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
17870378 AACACGTTTA
Statistics
Matches: 66, Mismatches: 14, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.17, C:0.31, G:0.15, T:0.37
Consensus pattern (40 bp):
TTTGCACATACGTGCCCCTGATTGTACTTCGGTACCCCTG
Found at i:17870335 original size:20 final size:19
Alignment explanation
Indices: 17870279--17870341 Score: 56
Period size: 20 Copynumber: 3.2 Consensus size: 19
17870269 GTTCCCCTAA
17870279 TTGTACTTCGGTACCCCTGT
1 TTGTACTTC-GTACCCCTGT
* *
17870299 TTGCACATAT-GTGCCCCTGT
1 TTGTAC-T-TCGTACCCCTGT
*
17870319 TTGTACTTCGATACCCCTCT
1 TTGTACTTCG-TACCCCTGT
17870339 TTG
1 TTG
17870342 CACATACATG
Statistics
Matches: 34, Mismatches: 5, Indels: 8
0.72 0.11 0.17
Matches are distributed among these distances:
18 1 0.03
19 2 0.06
20 29 0.85
21 1 0.03
22 1 0.03
ACGTcount: A:0.13, C:0.30, G:0.17, T:0.40
Consensus pattern (19 bp):
TTGTACTTCGTACCCCTGT
Found at i:17870355 original size:20 final size:20
Alignment explanation
Indices: 17870292--17870357 Score: 62
Period size: 20 Copynumber: 3.3 Consensus size: 20
17870282 TACTTCGGTA
**
17870292 CCCCTGTTTGCACATATGTG
1 CCCCTGTTTGCACATACATG
* * *
17870312 CCCCTGTTTGTAC-TTCGATA
1 CCCCTGTTTGCACATAC-ATG
*
17870332 CCCCTCTTTGCACATACATG
1 CCCCTGTTTGCACATACATG
17870352 CCCCTG
1 CCCCTG
17870358 ATTGTATTTC
Statistics
Matches: 34, Mismatches: 10, Indels: 4
0.71 0.21 0.08
Matches are distributed among these distances:
19 1 0.03
20 31 0.91
21 2 0.06
ACGTcount: A:0.15, C:0.36, G:0.15, T:0.33
Consensus pattern (20 bp):
CCCCTGTTTGCACATACATG
Found at i:17880659 original size:41 final size:41
Alignment explanation
Indices: 17880608--17880808 Score: 222
Period size: 41 Copynumber: 4.9 Consensus size: 41
17880598 TATATTGCTG
*
17880608 AATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* ** * *
17880649 AATTGAACATACGTGCCCCTATTTACACATCGGTACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* * * *
17880690 AATTGTACATACGTGACCCTATTTGTACTACGGTACCCTTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
** * * ** * *
17880731 AATTGCACATATATTCCCTTGCTTGTACTACGGTACCCCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
* *
17880772 AATTGCACATACATGCCCCTATTTGTACTTCAGTACC
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACC
17880809 TCTGGATGTA
Statistics
Matches: 129, Mismatches: 31, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 129 1.00
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.32
Consensus pattern (41 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTA
Found at i:17880808 original size:82 final size:82
Alignment explanation
Indices: 17880605--17880808 Score: 250
Period size: 82 Copynumber: 2.5 Consensus size: 82
17880595 AATTATATTG
* *
17880605 CTGAATTGCACATACGTGCCCCTGTTTGTACTTCGGTACCCCTAAATTGAACATACGTGCCCCTA
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTGAACATACATGCCCCTA
17880670 TTTACACATCGGTACCC
66 TTTACACATCGGTACCC
* * * * * * * *
17880687 CTGAATTGTACATACGTGACCCTATTTGTACTACGGTACCCTTAAATTGCACATATATTCCCTTG
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTGAACATACATGCCCCT-
* *
17880752 CTTGTAC-TA-CGGTACCC
65 ATT-TACACATCGGTACCC
* *
17880769 CTGAATTGCACATACATGCCCCTATTTGTACTTCAGTACC
1 CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACC
17880809 TCTGGATGTA
Statistics
Matches: 103, Mismatches: 17, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
82 97 0.94
83 3 0.03
84 3 0.03
ACGTcount: A:0.24, C:0.29, G:0.15, T:0.32
Consensus pattern (82 bp):
CTGAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCCTAAATTGAACATACATGCCCCTA
TTTACACATCGGTACCC
Found at i:17886786 original size:5 final size:5
Alignment explanation
Indices: 17886738--17886774 Score: 60
Period size: 5 Copynumber: 7.8 Consensus size: 5
17886728 TGCTCTTCTC
17886738 TTTT- TTTT- TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
1 TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTTG TTTT
17886775 CTCTTTTTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
4 8 0.25
5 24 0.75
ACGTcount: A:0.00, C:0.00, G:0.14, T:0.86
Consensus pattern (5 bp):
TTTTG
Found at i:17888070 original size:3 final size:3
Alignment explanation
Indices: 17888062--17888093 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
17888052 CTCTATGGGA
17888062 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TC
17888094 AGGATCCTCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (3 bp):
TCT
Found at i:17889558 original size:16 final size:15
Alignment explanation
Indices: 17889537--17889570 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
17889527 CAAGTTTATA
*
17889537 ATAATTCATATATATT
1 ATAATTAATATA-ATT
17889553 ATAATTAATATAATT
1 ATAATTAATATAATT
17889568 ATA
1 ATA
17889571 TACTAGTTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 6 0.35
16 11 0.65
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (15 bp):
ATAATTAATATAATT
Found at i:17890155 original size:19 final size:19
Alignment explanation
Indices: 17890133--17890171 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
17890123 TTGTAAATGC
17890133 ACTAGACCAATGTAATTTT
1 ACTAGACCAATGTAATTTT
17890152 ACTAGACCAATGTAATTTT
1 ACTAGACCAATGTAATTTT
17890171 A
1 A
17890172 ACTTACCTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.15, G:0.10, T:0.36
Consensus pattern (19 bp):
ACTAGACCAATGTAATTTT
Found at i:17900379 original size:13 final size:14
Alignment explanation
Indices: 17900363--17900392 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
17900353 ATAATGCTAT
17900363 ATTTT-AATAATTC
1 ATTTTAAATAATTC
17900376 ATTTTAAATAATTC
1 ATTTTAAATAATTC
17900390 ATT
1 ATT
17900393 AATAAAATCG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.31
14 11 0.69
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (14 bp):
ATTTTAAATAATTC
Found at i:17922057 original size:18 final size:18
Alignment explanation
Indices: 17922023--17922061 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
17922013 GCTTGATTAA
*
17922023 ATATGTTTGTTACAATAT
1 ATATGTTTGATACAATAT
17922041 ATATGTTTGCATA-AATAT
1 ATATGTTTG-ATACAATAT
17922059 ATA
1 ATA
17922062 AATGCTATGT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 17 0.89
19 2 0.11
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.46
Consensus pattern (18 bp):
ATATGTTTGATACAATAT
Found at i:17933977 original size:58 final size:59
Alignment explanation
Indices: 17933904--17934096 Score: 230
Period size: 58 Copynumber: 3.3 Consensus size: 59
17933894 CGTATCGCTA
* *
17933904 ACCATCGAATATGAAAAGGGATGGTTTCTACCATCGATTACAG-AAAGGGATGGTTTCG
1 ACCATCGAATATGAAAAGGGATGGTTTCTACCATCGATTAAAGAAAAGGGATGGTCTCG
* * *
17933962 ACTATCGAATATGAAAAGTGATGGTTTCTATCATCGATTAAAGAAAAGGGATGGTCTCG
1 ACCATCGAATATGAAAAGGGATGGTTTCTACCATCGATTAAAGAAAAGGGATGGTCTCG
* ** * * * *
17934021 ACCATCGAATATGAAAACGGATGGTGACGACCATCGAAT-ATGAAAAGGGATGGTGAT-G
1 ACCATCGAATATGAAAAGGGATGGTTTCTACCATCGATTAAAGAAAAGGGATGGT-CTCG
* *
17934079 ACCATTGAATATGGAAAG
1 ACCATCGAATATGAAAAG
17934097 AGACAGTTTT
Statistics
Matches: 115, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
58 69 0.60
59 46 0.40
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (59 bp):
ACCATCGAATATGAAAAGGGATGGTTTCTACCATCGATTAAAGAAAAGGGATGGTCTCG
Found at i:17934075 original size:29 final size:29
Alignment explanation
Indices: 17933904--17934096 Score: 201
Period size: 29 Copynumber: 6.6 Consensus size: 29
17933894 CGTATCGCTA
*
17933904 ACCATCGAATATGAAAAGGGATGGTTTCT
1 ACCATCGAATATGAAAAGGGATGGTTTCG
* *
17933933 ACCATCGATTA-CAGAAAGGGATGGTTTCG
1 ACCATCGAATATGA-AAAGGGATGGTTTCG
* * *
17933962 ACTATCGAATATGAAAAGTGATGGTTTCT
1 ACCATCGAATATGAAAAGGGATGGTTTCG
* * * *
17933991 ATCATCGATTAAAGAAAAGGGATGGTCTCG
1 ACCATCGAAT-ATGAAAAGGGATGGTTTCG
* **
17934021 ACCATCGAATATGAAAACGGATGGTGACG
1 ACCATCGAATATGAAAAGGGATGGTTTCG
*
17934050 ACCATCGAATATGAAAAGGGATGGTGAT-G
1 ACCATCGAATATGAAAAGGGATGGT-TTCG
* *
17934079 ACCATTGAATATGGAAAG
1 ACCATCGAATATGAAAAG
17934097 AGACAGTTTT
Statistics
Matches: 134, Mismatches: 26, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
28 1 0.01
29 109 0.81
30 24 0.18
ACGTcount: A:0.36, C:0.13, G:0.26, T:0.24
Consensus pattern (29 bp):
ACCATCGAATATGAAAAGGGATGGTTTCG
Found at i:17936946 original size:33 final size:32
Alignment explanation
Indices: 17936901--17936992 Score: 95
Period size: 28 Copynumber: 2.9 Consensus size: 32
17936891 AGAATTAGTC
*
17936901 TGGGCCTGAGCCCTATACAGTATCAGTACAGTG
1 TGGGCCTTAGCCC-ATACAGTATCAGTACAGTG
17936934 TGGGCCTTAGCCCAT----TA-CAGTCACAGTG
1 TGGGCCTTAGCCCATACAGTATCAGT-ACAGTG
*
17936962 TGGGCCTTAGCCCAATACAGTAATTAGTACA
1 TGGGCCTTAGCCC-ATACAGT-ATCAGTACA
17936993 CTGCAGTGAT
Statistics
Matches: 49, Mismatches: 2, Indels: 15
0.74 0.03 0.23
Matches are distributed among these distances:
27 4 0.08
28 21 0.43
29 2 0.04
32 2 0.04
33 13 0.27
34 4 0.08
35 3 0.06
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (32 bp):
TGGGCCTTAGCCCATACAGTATCAGTACAGTG
Found at i:17936963 original size:28 final size:27
Alignment explanation
Indices: 17936924--17936983 Score: 102
Period size: 28 Copynumber: 2.2 Consensus size: 27
17936914 TATACAGTAT
*
17936924 CAGTACAGTGTGGGCCTTAGCCCATTA
1 CAGTACAGTGTGGGCCTTAGCCCAATA
17936951 CAGTCACAGTGTGGGCCTTAGCCCAATA
1 CAGT-ACAGTGTGGGCCTTAGCCCAATA
17936979 CAGTA
1 CAGTA
17936984 ATTAGTACAC
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
27 5 0.16
28 26 0.84
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (27 bp):
CAGTACAGTGTGGGCCTTAGCCCAATA
Found at i:17937318 original size:27 final size:27
Alignment explanation
Indices: 17937288--17937347 Score: 68
Period size: 27 Copynumber: 2.2 Consensus size: 27
17937278 CAACTCCTAG
*
17937288 GGGTATAATAGTCATTTTA-CAGTTTGA
1 GGGTATAATAGTAATTTTACCA-TTTGA
** *
17937315 GGGTATTTTAGTAATTTTACCATTTGG
1 GGGTATAATAGTAATTTTACCATTTGA
17937342 GGGTAT
1 GGGTAT
17937348 TTTGGTAATT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
27 26 0.93
28 2 0.07
ACGTcount: A:0.25, C:0.07, G:0.25, T:0.43
Consensus pattern (27 bp):
GGGTATAATAGTAATTTTACCATTTGA
Found at i:17937373 original size:54 final size:54
Alignment explanation
Indices: 17937313--17937753 Score: 435
Period size: 54 Copynumber: 8.2 Consensus size: 54
17937303 TTTACAGTTT
* * * *
17937313 GAGGGTATTTTAGTAATTTTACCATTTGGGGGTATTTTGGTAATTTTATCCTTC
1 GAGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
* ** ** *
17937367 GGGGGTATTTCGGTAATTTTACCCTTCTAGGGTATTTCGGTAATTTTACCCCT-
1 GAGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
* * * * *
17937420 GAGGGGTATTTCAGTAATTTTACCCTTCGTGGGTATTTGGGTAATTTTACCTTTT
1 GA-GGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
* * ** * *** *
17937475 GAGGGTATTTTCGCAATTTTACCCTTCAAGCGTATTTTAATAATTTTACCCCTC
1 GAGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
*** *
17937529 -AGGGGTATTCCGGTAATTTTACCCTTCGGGGGTATTTCAGTAATTTT-CCCTTTC
1 GA-GGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCC-TTC
* * * *
17937583 AAGGGTATTTT-GATAATTTTACCCCTCGGGGGTATTTCGATAATTTTACTCTTC
1 GAGGGTATTTTAG-TAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
*
17937637 GAGGGTATTTTAGAAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
1 GAGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
* * * * *
17937691 GAGGGT-TTTTCGATAATTTTACCCCTT-AGTGGTATTTCTGTAATTTTACCTTTC
1 GAGGGTATTTTAG-TAATTTTA-CCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
*
17937745 GGGGGTATT
1 GAGGGTATT
17937754 ACGATAATGT
Statistics
Matches: 319, Mismatches: 57, Indels: 21
0.80 0.14 0.05
Matches are distributed among these distances:
53 11 0.03
54 295 0.92
55 13 0.04
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (54 bp):
GAGGGTATTTTAGTAATTTTACCCTTCGGGGGTATTTCGGTAATTTTACCCTTC
Found at i:17937426 original size:81 final size:81
Alignment explanation
Indices: 17937314--17937753 Score: 435
Period size: 81 Copynumber: 5.4 Consensus size: 81
17937304 TTACAGTTTG
* * *
17937314 AGGGTATTTTAGTAATTTTACCATTTG-GGGGTATTTTGGTAATTTTATCCTTCGGGGGTATTTC
1 AGGGTATTTCAGTAATTTTACC-CTTGAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTC
17937378 GGTAATTTTACCCTTCT
65 GGTAATTTTACCCTTCT
* * ** * *
17937395 AGGGTATTTCGGTAATTTTACCCCTGAGGGGTATTTCAGTAATTTTACCCTTCGTGGGTATTTGG
1 AGGGTATTTCAGTAATTTTACCCTTGAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTCG
*
17937460 GTAATTTTA-CCTTTT
66 GTAATTTTACCCTTCT
* * * * ** * * *
17937475 GAGGGTATTTTC-GCAATTTTACCCTTCAAGCGTATTTTAATAATTTTACCCCTCAGGGGTATTC
1 -AGGGTA-TTTCAGTAATTTTACCCTTGAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTT
*
17937539 CGGTAATTTTACCCTTCG
64 CGGTAATTTTACCCTTCT
* * * * *
17937557 GGGGTATTTCAGTAATTTT-CCCTTTCAAGGGTATTTTGATAATTTTACCCCTCGGGGGTATTTC
1 AGGGTATTTCAGTAATTTTACCC-TTGAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTC
* * *
17937621 GATAATTTTACTCTTCG
65 GGTAATTTTACCCTTCT
* * * * *
17937638 AGGGTATTTTAGAAATTTTACCCTTCG-GGGGTATTTCGGTAATTTTACCCTTCGAGGGTTTTTC
1 AGGGTATTTCAGTAATTTTACCCTT-GAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTC
* *
17937702 GATAATTTTACCCCT-T
65 GGTAATTTTACCCTTCT
* *
17937718 AGTGGTATTTCTGTAATTTTACCTTTCG-GGGGTATT
1 AG-GGTATTTCAGTAATTTTACCCTT-GAGGGGTATT
17937754 ACGATAATGT
Statistics
Matches: 301, Mismatches: 49, Indels: 18
0.82 0.13 0.05
Matches are distributed among these distances:
80 16 0.05
81 274 0.91
82 11 0.04
ACGTcount: A:0.20, C:0.16, G:0.21, T:0.43
Consensus pattern (81 bp):
AGGGTATTTCAGTAATTTTACCCTTGAGGGGTATTTTGGTAATTTTACCCTTCGGGGGTATTTCG
GTAATTTTACCCTTCT
Found at i:17937761 original size:27 final size:27
Alignment explanation
Indices: 17937326--17937769 Score: 391
Period size: 27 Copynumber: 16.4 Consensus size: 27
17937316 GGTATTTTAG
* * * *
17937326 TAATTTTACCATTTGGGGGTATTTTGG
1 TAATTTTACCCTTCGGGGGTATTTCGA
* *
17937353 TAATTTTATCCTTCGGGGGTATTTCGG
1 TAATTTTACCCTTCGGGGGTATTTCGA
** *
17937380 TAATTTTACCCTTCTAGGGTATTTCGG
1 TAATTTTACCCTTCGGGGGTATTTCGA
*
17937407 TAATTTTACCCCT-GAGGGGTATTTC-A
1 TAATTTTACCCTTCG-GGGGTATTTCGA
* * *
17937433 GTAATTTTACCCTTCGTGGGTATTTGGG
1 -TAATTTTACCCTTCGGGGGTATTTCGA
* * *
17937461 TAATTTTACCTTTTGAGGGTATTTTCG-
1 TAATTTTACCCTTCGGGGGTA-TTTCGA
* ** * **
17937488 CAATTTTACCCTTCAAGCGTATTTTAA
1 TAATTTTACCCTTCGGGGGTATTTCGA
* * * *
17937515 TAATTTTACCCCTCAGGGGTATTCCGG
1 TAATTTTACCCTTCGGGGGTATTTCGA
17937542 TAATTTTACCCTTCGGGGGTATTTC-A
1 TAATTTTACCCTTCGGGGGTATTTCGA
** *
17937568 GTAATTTT-CCCTTTCAAGGGTATTTTGA
1 -TAATTTTACCC-TTCGGGGGTATTTCGA
*
17937596 TAATTTTACCCCTCGGGGGTATTTCGA
1 TAATTTTACCCTTCGGGGGTATTTCGA
* * *
17937623 TAATTTTACTCTTCGAGGGTATTTTAGA
1 TAATTTTACCCTTCGGGGGTA-TTTCGA
*
17937651 -AATTTTACCCTTCGGGGGTATTTCGG
1 TAATTTTACCCTTCGGGGGTATTTCGA
* *
17937677 TAATTTTACCCTTCGAGGGTTTTTCGA
1 TAATTTTACCCTTCGGGGGTATTTCGA
* *
17937704 TAATTTTACCCCTT-AGTGGTATTTCTG-
1 TAATTTTA-CCCTTCGGGGGTATTTC-GA
* *
17937731 TAATTTTACCTTTCGGGGGTATTACGA
1 TAATTTTACCCTTCGGGGGTATTTCGA
*
17937758 TAATGTTACCCT
1 TAATTTTACCCT
17937770 CAATTAGCAA
Statistics
Matches: 335, Mismatches: 66, Indels: 32
0.77 0.15 0.07
Matches are distributed among these distances:
26 15 0.04
27 300 0.90
28 20 0.06
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
TAATTTTACCCTTCGGGGGTATTTCGA
Found at i:17940298 original size:576 final size:576
Alignment explanation
Indices: 17938749--17940354 Score: 1621
Period size: 576 Copynumber: 2.8 Consensus size: 576
17938739 CAAATTTCCA
* ** * * * *
17938749 GATTTT-ATCCTAAAAATCCTTCATTTATCCTTCCTTGATTTTCTCCACAAATTTCTCCTCAACT
1 GATTTTCA-CCTAAAAATCCATCCCTAATCCCTCCTTGATTTTCTCCACCAATTCCTCCTCAACT
* * * *
17938813 ACCTCTCTATGACCAGTTCAAACTCTCCACAATAGTGTTTCAGCCCAACACTACTACCTACACAA
65 CCCTCTCTATAACCAGTTCAAACTCGCCACAACAGTGTTTCAGCCCAACACTACTACCTACACAA
* * * * *
17938878 CTCAAGCAGCAAAAAAAATTACATACTTGCACATCGCAGGACTTGAACCTCAAACCTCAAAGATA
130 CTCAAGCAGCAAAAATAATTACTTCCTTGCACATCACAGGACTTGAACCTCAGACCTCAAAGATA
* * *
17938943 CCTCACACGCCACCTATCACTGGACCAATAGTCCCTTTGTGTCATAAAACAAGTATTAATATATA
195 CCTCACATGCCACCTATCACTGGACCAATAGTCTCTTTGTGTCATAAAACAAATATTAATATATA
* * *
17939008 -AGAGGT-TAAAGTGCCAGTGTTCAAATTCATTTAAGAGAAAAATTAAAAATTTTGCCAAGGCCA
260 GA-AGGTCT-AAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAACTTTCCCAAGGCCA
* * * * *
17939071 AGACTTGAACCCAATCCTCCAAACACTCCCATACACACCCAAATCACTTAGCCACTAAAACAAAC
323 AGACTTGAACCCAAGCCTCCAAACACCCCCAAACACACCCAAATCACTTAGCCACTAAAGCAAAT
* *
17939136 AAGCAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTACAGCTTGTCTC
388 AAGCAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTAAAGTTTGTCTC
** * * * * * **
17939201 AGTAGTGTGAGTCACACGGCCTGGCCACACAG--CCATGTGA--C-CCCTACAGTGTG--A-ATT
453 AGCCGTGTGAGTCACACAGCCTGGCCACACGGCCCCATGTGAGTCACACAAC-CTG-GCCACACA
* *** * * * * * *
17939258 GCTCCATCTTTTTCCATGA-AGTTTTAAATGTTCCCGAT-TTTCTCC-T-AA-----AAA--T--
516 G--CCAT-GTGACCCCT-ACAGTGTGAATTGCT-CC-ATCTTTTTCCATGAAGTTTTAAATGTAC
17939310 CC
575 CC
* * * ** *** * * * * * *
17939312 -A---TC-CCT---AATCCCTCCTTGATTTTCTCCACCAATTCCTCCTCCACTGCCTCTCTATAA
1 GATTTTCACCTAAAAATCCATCCCT-AATCCCTCCTTGATTTTCTCCACCAATTCCTC-CT-CAA
** * * * ** * ** * *
17939369 C-CAGT-TC-A-AA-C---TC--GC-CACAAC-AGTGTTTCAGC-CCAAC-ACTACTACCTACAC
63 CTCCCTCTCTATAACCAGTTCAAACTCGCCACAACAGTGT-TTCAGC-CCAAC-ACTA-CTAC-C
* * * * * * * * * *
17939420 AACTCAA-GC-AGCAAG-AATAATTACTTCCTTGC--ACAT--CGCAGGACTTGAACCTCAGACC
123 TACACAACTCAAGC-AGCAA-AAATAATTACTTCCTTGCACATCACAGGACTTGAACCTCAGACC
*
17939478 TCAAAGATACCTCACATGCCACCTATCACTGGACCAATAGTCTCTTTGTGTCATAAAACAAGTAT
186 TCAAAGATACCTCACATGCCACCTATCACTGGACCAATAGTCTCTTTGTGTCATAAAACAAATAT
**
17939543 TAATATATAGAAGGTCTAAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAACTTTGTC
251 TAATATATAGAAGGTCTAAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAACTTTCCC
* *
17939608 AAGGCCAAGACTTGAACCCAAGCCTCCAAACACTCCCATACACACCCAAATCACTTAGCCACTAA
316 AAGGCCAAGACTTGAACCCAAGCCTCCAAACACCCCCAAACACACCCAAATCACTTAGCCACTAA
17939673 AGCAAATAAGCAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTAAAGT
381 AGCAAATAAGCAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTAAAGT
* * *
17939738 TTGTCTCAGCCGTGTGAGTCACACAGCCTGGTCACATGGCCCCATGTGAGTTACACAACCTGGCC
446 TTGTCTCAGCCGTGTGAGTCACACAGCCTGGCCACACGGCCCCATGTGAGTCACACAACCTGGCC
*
17939803 ACAC-GACCATGTGACCCCTACAGTGTGAATTGTTCCATCTTTTTCCATGAAGTTTTAAATGTAC
511 ACACAG-CCATGTGACCCCTACAGTGTGAATTGCTCCATCTTTTTCCATGAAGTTTTAAATGTAC
17939867 CC
575 CC
* * *
17939869 GATTTTCACCTGAAAATCCTTCCCTTATCCCTCCTTGATTTTCTCCACCAATTCCTCCTCAACTC
1 GATTTTCACCTAAAAATCCATCCCTAATCCCTCCTTGATTTTCTCCACCAATTCCTCCTCAACTC
* * *
17939934 CCTCTCTATGACCAGTTCAAACTCGCCACAACAGTGTTTCAGTCCAACACTACTACCTACATAAC
66 CCTCTCTATAACCAGTTCAAACTCGCCACAACAGTGTTTCAGCCCAACACTACTACCTACACAAC
* * *
17939999 TCACGCAGCAAAAATATTTATTTCCTTGCACATCACAGGACTTGAACCTCAGACCTCAAAGATAC
131 TCAAGCAGCAAAAATAATTACTTCCTTGCACATCACAGGACTTGAACCTCAGACCTCAAAGATAC
* * *
17940064 CTCACATTCCACCTATCACTGGACCAATGGTCTCTTTGTGTCATAAAACAAATATTAATCTATA-
196 CTCACATGCCACCTATCACTGGACCAATAGTCTCTTTGTGTCATAAAACAAATATTAATATATAG
* *
17940128 AGATGTCTAAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAATTTTCCCAAGGCCAAG
261 A-AGGTCTAAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAACTTTCCCAAGGCCAAG
*
17940193 ACTTGAACCCAAGCCTCCAAACACCCCCAAACACACCCAAATCACTTAGCCATTAAAGCAAATAA
325 ACTTGAACCCAAGCCTCCAAACACCCCCAAACACACCCAAATCACTTAGCCACTAAAGCAAATAA
* *
17940258 GCAATTTGTGACAAAACATACAAAACTTAGAGACATAAATTTTGGGGCGTTACAGTTTGTCTCAG
390 GCAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTAAAGTTTGTCTCAG
*
17940323 CCGTGTGAGTCACACGGCCTGGCCACACGGCC
455 CCGTGTGAGTCACACAGCCTGGCCACACGGCC
17940355 ATGTGACCCA
Statistics
Matches: 846, Mismatches: 133, Indels: 115
0.77 0.12 0.11
Matches are distributed among these distances:
544 300 0.35
545 4 0.00
546 26 0.03
547 31 0.04
548 24 0.03
549 12 0.01
550 3 0.00
553 4 0.00
554 1 0.00
555 11 0.01
556 19 0.02
557 5 0.01
558 7 0.01
559 1 0.00
561 2 0.00
562 7 0.01
563 4 0.00
564 22 0.03
565 10 0.01
566 1 0.00
567 1 0.00
570 2 0.00
571 5 0.01
572 17 0.02
573 14 0.02
574 8 0.01
575 1 0.00
576 304 0.36
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (576 bp):
GATTTTCACCTAAAAATCCATCCCTAATCCCTCCTTGATTTTCTCCACCAATTCCTCCTCAACTC
CCTCTCTATAACCAGTTCAAACTCGCCACAACAGTGTTTCAGCCCAACACTACTACCTACACAAC
TCAAGCAGCAAAAATAATTACTTCCTTGCACATCACAGGACTTGAACCTCAGACCTCAAAGATAC
CTCACATGCCACCTATCACTGGACCAATAGTCTCTTTGTGTCATAAAACAAATATTAATATATAG
AAGGTCTAAGTGCCAGTGTTCAGATTCATTTAAGAGAAAAATTAAAAACTTTCCCAAGGCCAAGA
CTTGAACCCAAGCCTCCAAACACCCCCAAACACACCCAAATCACTTAGCCACTAAAGCAAATAAG
CAATTTGTGACAAAACATACAAAAATTAGAGACATAAATTTTGGGGCGTTAAAGTTTGTCTCAGC
CGTGTGAGTCACACAGCCTGGCCACACGGCCCCATGTGAGTCACACAACCTGGCCACACAGCCAT
GTGACCCCTACAGTGTGAATTGCTCCATCTTTTTCCATGAAGTTTTAAATGTACCC
Found at i:17946092 original size:59 final size:59
Alignment explanation
Indices: 17946000--17946111 Score: 152
Period size: 59 Copynumber: 1.9 Consensus size: 59
17945990 GTGCTAAATG
* * * *
17946000 ATGGTCATAACCGTCCCTTTTCATATTTGATGGTTGAAACCATCCCCTTTCATTTATCA
1 ATGGTCATAACCATCCCTTTCCATAGTTGATGGTCGAAACCATCCCCTTTCATTTATCA
* ** *
17946059 ATGGTCATCACCATCCCTTTCCATAGTTGATGGTCGTCACCATCCCTTTTCAT
1 ATGGTCATAACCATCCCTTTCCATAGTTGATGGTCGAAACCATCCCCTTTCAT
17946112 AATCTATAGC
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
59 45 1.00
ACGTcount: A:0.21, C:0.29, G:0.12, T:0.38
Consensus pattern (59 bp):
ATGGTCATAACCATCCCTTTCCATAGTTGATGGTCGAAACCATCCCCTTTCATTTATCA
Found at i:17946132 original size:29 final size:29
Alignment explanation
Indices: 17946100--17946166 Score: 98
Period size: 29 Copynumber: 2.3 Consensus size: 29
17946090 GGTCGTCACC
* *
17946100 ATCCCTTTTCATAATCTATAGCCGAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
* *
17946129 ATCCCTTTTCATATTCGATAGTCAAAGCT
1 ATCCCTTTTCATAATCGATAGCCAAAGCT
17946158 ATCCCTTTT
1 ATCCCTTTT
17946167 TGTAACAGCC
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.39
Consensus pattern (29 bp):
ATCCCTTTTCATAATCGATAGCCAAAGCT
Found at i:17949705 original size:29 final size:29
Alignment explanation
Indices: 17949672--17949734 Score: 81
Period size: 29 Copynumber: 2.2 Consensus size: 29
17949662 GGGTGTTACA
*
17949672 CTTTTAATACTCGATGGTCGTCACCATCC
1 CTTTTAATACTCGATGGTCATCACCATCC
* * *
17949701 CTTTTCATAGTTGATGGTCATCACCATCC
1 CTTTTAATACTCGATGGTCATCACCATCC
*
17949730 TTTTT
1 CTTTT
17949735 TATAATCAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.19, C:0.27, G:0.13, T:0.41
Consensus pattern (29 bp):
CTTTTAATACTCGATGGTCATCACCATCC
Found at i:17949758 original size:29 final size:29
Alignment explanation
Indices: 17949726--17949796 Score: 72
Period size: 29 Copynumber: 2.4 Consensus size: 29
17949716 GGTCATCACC
* *
17949726 ATCCTTTTTTATAATCAATAGCCAAAGCT
1 ATCCTTTTTCATAATCAATAACCAAAGCT
* ** *
17949755 ATCCCTTTTCATAATTGATAACCGAAGCT
1 ATCCTTTTTCATAATCAATAACCAAAGCT
17949784 ATTCC-TTTTCATA
1 A-TCCTTTTTCATA
17949797 TTCGATAGTC
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
29 32 0.91
30 3 0.09
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.39
Consensus pattern (29 bp):
ATCCTTTTTCATAATCAATAACCAAAGCT
Found at i:17949803 original size:29 final size:29
Alignment explanation
Indices: 17949743--17949878 Score: 134
Period size: 29 Copynumber: 4.7 Consensus size: 29
17949733 TTTATAATCA
* *
17949743 ATAGCCAAAGCTATCCCTTTTCATAATT-G
1 ATAGCCGAAGCTATTCCTTTTCAT-ATTCG
*
17949772 ATAACCGAAGCTATTCCTTTTCATATTCG
1 ATAGCCGAAGCTATTCCTTTTCATATTCG
* * * *
17949801 ATAGTCGAAGCTGTACCTTTTCATATTCT
1 ATAGCCGAAGCTATTCCTTTTCATATTCG
* *
17949830 ATAGCCGAAGCTA-TCGATTTTGATATTCG
1 ATAGCCGAAGCTATTC-CTTTTCATATTCG
* *
17949859 TTAGCTGAAGCTA-TCCTTTT
1 ATAGCCGAAGCTATTCCTTTT
17949879 TCATTGGTCG
Statistics
Matches: 88, Mismatches: 17, Indels: 5
0.80 0.15 0.05
Matches are distributed among these distances:
28 8 0.09
29 80 0.91
ACGTcount: A:0.26, C:0.21, G:0.14, T:0.38
Consensus pattern (29 bp):
ATAGCCGAAGCTATTCCTTTTCATATTCG
Found at i:17950714 original size:5 final size:5
Alignment explanation
Indices: 17950704--17950731 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
17950694 TACAAACTTT
17950704 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
1 ATTTA ATTTA ATTTA ATTTA ATTTA ATT
17950732 ATAAATTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (5 bp):
ATTTA
Found at i:17961055 original size:9 final size:9
Alignment explanation
Indices: 17961041--17961066 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
17961031 CGAGATGAGA
17961041 CTGAGCATG
1 CTGAGCATG
17961050 CTGAGCATG
1 CTGAGCATG
17961059 CTGAGCAT
1 CTGAGCAT
17961067 TTGAGAATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.23, C:0.23, G:0.31, T:0.23
Consensus pattern (9 bp):
CTGAGCATG
Found at i:17991841 original size:43 final size:40
Alignment explanation
Indices: 17991786--17991984 Score: 191
Period size: 43 Copynumber: 4.7 Consensus size: 40
17991776 ATTTAGTGAA
*
17991786 ACGGGGAATCAGCACATAGCAACCCCTTTCACAGTCAAAGAT
1 ACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAA-AT
* * * *
17991828 ACGGTGGAATCAGCACTTAACAACCACCTTTATATTCAGTAAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCA-AAAT
* * * * * *
17991871 ACGGGGAATCAACACATAGTAAACCCTTTCACAATCAAAGGT
1 ACGGGGAATCAGCACTTAGCAACCCCTTT-ACAGTCAAA-AT
*
17991913 ACGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATAAT
1 ACGG-GGAATCAGCACTTAGCAACC-CCTTTACAGTCAA-AAT
*
17991956 TCGGGGAATCAGCACTTAGCAACCCCTTT
1 ACGGGGAATCAGCACTTAGCAACCCCTTT
17991985 TTCTTTAATG
Statistics
Matches: 127, Mismatches: 22, Indels: 17
0.77 0.13 0.10
Matches are distributed among these distances:
41 11 0.09
42 49 0.39
43 55 0.43
44 12 0.09
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (40 bp):
ACGGGGAATCAGCACTTAGCAACCCCTTTACAGTCAAAAT
Found at i:17991898 original size:85 final size:85
Alignment explanation
Indices: 17991745--17991984 Score: 331
Period size: 85 Copynumber: 2.8 Consensus size: 85
17991735 ATCCGTTACT
* * *
17991745 CGGTGGATTCAGCACTTAGCAATCACC-TTAAATTTAGTGAA-ACGGGGAATCAGCACATAGCAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGT-AATACGGGGAATCAGCACATAGCAA
*
17991808 CCCCTTTCACAGTCAAAGATA
65 CCCCTTTCACAATCAAAGATA
* * * * *
17991829 CGGTGGAATCAGCACTTAACAACCACCTTTATATTCAGTAATACGGGGAATCAACACATAGTAAA
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
*
17991894 CCCTTTCACAATCAAAGGTA
66 CCCTTTCACAATCAAAGATA
* * * *
17991914 CGGTGGAATCAGCACTTAGCAACCACCTTTAAAGTCAATAATTCGGGGAATCAGCACTTAGCAAC
1 CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
17991979 CCCTTT
66 CCCTTT
17991985 TTCTTTAATG
Statistics
Matches: 135, Mismatches: 19, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
84 26 0.19
85 109 0.81
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.23
Consensus pattern (85 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTTAAATTCAGTAATACGGGGAATCAGCACATAGCAAC
CCCTTTCACAATCAAAGATA
Found at i:18002903 original size:15 final size:15
Alignment explanation
Indices: 18002883--18002918 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
18002873 CATCAAGCCA
*
18002883 CTTGATAATTTCTTT
1 CTTGATAACTTCTTT
18002898 CTTGATAACTTCTTT
1 CTTGATAACTTCTTT
*
18002913 CATGAT
1 CTTGAT
18002919 CAGATTCAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.17, G:0.08, T:0.53
Consensus pattern (15 bp):
CTTGATAACTTCTTT
Found at i:18008230 original size:21 final size:22
Alignment explanation
Indices: 18008187--18008237 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
18008177 AAGGTAGAAG
18008187 TTATGTGGCAGTTTATCTATAA
1 TTATGTGGCAGTTTATCTATAA
*
18008209 TTATGTGGCCG-TTATC-AGTAA
1 TTATGTGGCAGTTTATCTA-TAA
18008230 TTATGTGG
1 TTATGTGG
18008238 TGGTTTGTCC
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 1 0.04
21 16 0.59
22 10 0.37
ACGTcount: A:0.24, C:0.10, G:0.24, T:0.43
Consensus pattern (22 bp):
TTATGTGGCAGTTTATCTATAA
Found at i:18013706 original size:20 final size:20
Alignment explanation
Indices: 18013681--18013725 Score: 81
Period size: 20 Copynumber: 2.2 Consensus size: 20
18013671 CTTGATACTT
18013681 ACTTGATAACGCCTGTGTAC
1 ACTTGATAACGCCTGTGTAC
*
18013701 ACTTGATAACGGCTGTGTAC
1 ACTTGATAACGCCTGTGTAC
18013721 ACTTG
1 ACTTG
18013726 CACAAACCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (20 bp):
ACTTGATAACGCCTGTGTAC
Found at i:18014867 original size:18 final size:17
Alignment explanation
Indices: 18014832--18014877 Score: 51
Period size: 17 Copynumber: 2.8 Consensus size: 17
18014822 GTTTCTATTA
18014832 TTTTCACAATCTAGAGT
1 TTTTCACAATCTAGAGT
* *
18014849 TTTTCACAGTTCTATAG-
1 TTTTCACA-ATCTAGAGT
18014866 TTTTCA-AATCTA
1 TTTTCACAATCTA
18014878 TAATTTCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
15 4 0.16
16 1 0.04
17 14 0.56
18 6 0.24
ACGTcount: A:0.28, C:0.17, G:0.09, T:0.46
Consensus pattern (17 bp):
TTTTCACAATCTAGAGT
Found at i:18018690 original size:145 final size:146
Alignment explanation
Indices: 18018417--18018709 Score: 579
Period size: 145 Copynumber: 2.0 Consensus size: 146
18018407 TATAGTTGAA
18018417 AAGTGGTGATTAAAATATATTAAACTAAATGCAATGATCCCTAATGCAAATTATCCCAACTATAT
1 AAGTGGTGATTAAAATATATTAAACTAAATGCAATGATCCCTAATGCAAATTATCCCAACTATAT
18018482 AAACTTAATCAAATAGATTTTAGTAAAATTAAACACAATTTTGCAACAATTATAACATCAATAAA
66 AAACTTAATCAAATAGATTTTAGTAAAATTAAACACAATTTTGCAACAATTATAACATCAATAAA
18018547 CTAGGAAAATTACTTT
131 CTAGGAAAATTACTTT
18018563 AAGTGGTGA-TAAAATATATTAAACTAAATGCAATGATCCCTAATGCAAATTATCCCAACTATAT
1 AAGTGGTGATTAAAATATATTAAACTAAATGCAATGATCCCTAATGCAAATTATCCCAACTATAT
18018627 AAACTTAATCAAATAGATTTTAGTAAAATTAAACACAATTTTGCAACAATTATAACATCAATAAA
66 AAACTTAATCAAATAGATTTTAGTAAAATTAAACACAATTTTGCAACAATTATAACATCAATAAA
18018692 CTAGGAAAATTACTTT
131 CTAGGAAAATTACTTT
18018708 AA
1 AA
18018710 TTAAACTCAA
Statistics
Matches: 147, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
145 138 0.94
146 9 0.06
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (146 bp):
AAGTGGTGATTAAAATATATTAAACTAAATGCAATGATCCCTAATGCAAATTATCCCAACTATAT
AAACTTAATCAAATAGATTTTAGTAAAATTAAACACAATTTTGCAACAATTATAACATCAATAAA
CTAGGAAAATTACTTT
Found at i:18019511 original size:38 final size:38
Alignment explanation
Indices: 18019436--18019511 Score: 91
Period size: 38 Copynumber: 2.0 Consensus size: 38
18019426 GGCGTGAGGG
* * * *
18019436 TGAAAGATAGCTAAGAGGGTTGAGAGAGGATAGAATGA
1 TGAAAGATAGCTAAGAGGATTGAAAAAGGAGAGAATGA
*
18019474 TGAAAGATAGCTAAGATGATTGAAAAAGTGAGA-AATGA
1 TGAAAGATAGCTAAGAGGATTGAAAAAG-GAGAGAATGA
18019512 GCTCTTATTT
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
38 29 0.91
39 3 0.09
ACGTcount: A:0.46, C:0.03, G:0.32, T:0.20
Consensus pattern (38 bp):
TGAAAGATAGCTAAGAGGATTGAAAAAGGAGAGAATGA
Found at i:18023071 original size:45 final size:45
Alignment explanation
Indices: 18023020--18023361 Score: 208
Period size: 45 Copynumber: 7.8 Consensus size: 45
18023010 GATAGGATTC
* * * *
18023020 AGTCTGCCCCACTACAACTTTAGGGGGATAAGACTTGCTTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTG
* * * *
18023065 AGTCTGCTCCACTGTATCTTCAGGGAAATAAGACTCGCTTTCTTG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTG
* * *
18023110 GGTCTGCTCCACTGCAACTTCAGGGAGATAAGACCTGC--T-ATG
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTG
* * * * * *
18023152 A-TATGCT-CTCTGTAACTTCAGAGAGATAAGA--T-CTATCACTTT
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCT-T-TCTTG
* ** * * * ** *
18023194 AATCCACTCTACTAG-AACTTTAGGGAGATAGGACTAT-C-GGCTTT
1 AGTCTGCTCCACT-GCAACTTCAGGGAGATAAGACT-TGCTTTCTTG
* * * ** *
18023238 AATCTGCTCCACTGCAACTTCAGGGAGTTAAGATTTGCCATCTTC
1 AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTG
* * * *
18023283 AGTCTGCCCCACTGCAACCTCA-GGAGGATAAGACTTGCTTAC-TC
1 AGTCTGCTCCACTGCAACTTCAGGGA-GATAAGACTTGCTTTCTTG
18023327 AGTCTGCTCCACTAG-AACTTCAGGGAGATAAGACT
1 AGTCTGCTCCACT-GCAACTTCAGGGAGATAAGACT
18023362 AGATACAATT
Statistics
Matches: 227, Mismatches: 53, Indels: 35
0.72 0.17 0.11
Matches are distributed among these distances:
37 1 0.00
38 1 0.00
40 21 0.09
41 5 0.02
42 4 0.02
43 6 0.03
44 80 0.35
45 107 0.47
47 2 0.01
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (45 bp):
AGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGCTTTCTTG
Found at i:18023257 original size:44 final size:43
Alignment explanation
Indices: 18023112--18023487 Score: 238
Period size: 44 Copynumber: 8.7 Consensus size: 43
18023102 CTTTCTTGGG
* * *
18023112 TCTGCTCCACTGCAACTTCAGGGAGATAAGAC-CT-GCTATGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATGGCTTTAA
* * * * **
18023153 TATGCT-CTCTGTAACTTCAGAGAGATAAGATCTATCACTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTATGGCTTTAA
** * * *
18023196 TCCACTCTACTAG-AACTTTAGGGAGATAGGACTATCGGCTTTAA
1 TCTGCTCCACT-GCAACTTCAGGGAGATAAGACTAT-GGCTTTAA
* * * *
18023240 TCTGCTCCACTGCAACTTCAGGGAGTTAAGA-TTTGCCATCTTCAG
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATGGC-T-TT-AA
* * *
18023285 TCTGCCCCACTGCAACCTCA-GGAGGATAAGACT-T-GCTTACTCAG
1 TCTGCTCCACTGCAACTTCAGGGA-GATAAGACTATGGCTT--T-AA
* **
18023329 TCTGCTCCACTAG-AACTTCAGGGAGATAAGACTA--GATACAA
1 TCTGCTCCACT-GCAACTTCAGGGAGATAAGACTATGGCTTTAA
* * * *
18023370 TTTGCT-CTCTGCAACTTCAGAGAGATAAGATCTGTGG-TTGTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA-CTATGGCTT-TAA
* * * *
18023413 TCCGCTCCACTGCAACTTCAGAGAGATAGGATTATTGGCTTTAA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGACTA-TGGCTTTAA
*
18023457 TCTGCTCCACTGCAACTTCAAGGAGATAAGA
1 TCTGCTCCACTGCAACTTCAGGGAGATAAGA
18023488 TTTGCCATAT
Statistics
Matches: 257, Mismatches: 53, Indels: 47
0.72 0.15 0.13
Matches are distributed among these distances:
39 1 0.00
40 41 0.16
41 14 0.05
42 5 0.02
43 24 0.09
44 138 0.54
45 33 0.13
46 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.28
Consensus pattern (43 bp):
TCTGCTCCACTGCAACTTCAGGGAGATAAGACTATGGCTTTAA
Found at i:18023388 original size:217 final size:216
Alignment explanation
Indices: 18022934--18023500 Score: 575
Period size: 217 Copynumber: 2.6 Consensus size: 216
18022924 AATATCAATT
* * * * * * *
18022934 TGATGCAATCTGCTCTACTGTAATTTAAGAGAGATAAGATCCATCACTCTAATCCACT-TCACTA
1 TGATACAATATGCTCT-CTGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCT-ACTA
* * * * * * *
18022998 CAACTTTAGGGAGATAGGAT-T--C---AGTCTGCCCCACTACAACTTTAGGGGGATAAGACTTG
64 GAACTTTAGGGAGATAGGATATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
** * * * * * * **
18023057 CTTTCTTGAGTCTGCTCCACTGTATCTTCAGGGAAATAAGACTCGCTTTCTTGGGTCTGCTCCAC
129 CCATCTTCAGTCTGCCCCACTGCAACCTCAGGGAAATAAGACTCGCTTACTTCAGTCTGCTCCAC
18023122 TGCAACTTCAGGGAGATAAGACC
194 TGCAACTTCAGGGAGATAAGACC
* ** *
18023145 TGCTATGATATGCTCTCTGTAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCTACTAGA
1 TGATACAATATGCTCTCTGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCTACTAGA
*
18023210 ACTTTAGGGAGATAGGACTATCGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGTTAAGATTTG
66 ACTTTAGGGAGATAGGA-TAT-GGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTG
* *
18023275 CCATCTTCAGTCTGCCCCACTGCAACCTCA-GGAGGATAAGACTTGCTTAC-TCAGTCTGCTCCA
129 CCATCTTCAGTCTGCCCCACTGCAACCTCAGGGA-AATAAGACTCGCTTACTTCAGTCTGCTCCA
18023338 CTAG-AACTTCAGGGAGATAAGA-C
193 CT-GCAACTTCAGGGAGATAAGACC
* * ** * *
18023361 TAGATACAATTTGCTCTCTGCAACTTCAGAGAGATAAGATCTGT-GGTTGTAATCCGCTCCACT-
1 T-GATACAATATGCTCTCTGCAACTTCAGAGAGATAAGATCTATCACTT-TAATCCACTCTACTA
* * *
18023424 GCAACTTCAGAGAGATAGGATTATTGGCTTTAATCTGCTCCACTGCAACTTCAAGGAGATAAGAT
64 G-AACTTTAGGGAGATAGGA-TA-TGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGAT
*
18023489 TTGCCATATTCA
126 TTGCCATCTTCA
18023501 ATCTTTTTAA
Statistics
Matches: 296, Mismatches: 45, Indels: 24
0.81 0.12 0.07
Matches are distributed among these distances:
210 59 0.20
211 13 0.04
212 1 0.00
215 1 0.00
216 5 0.02
217 149 0.50
218 68 0.23
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.29
Consensus pattern (216 bp):
TGATACAATATGCTCTCTGCAACTTCAGAGAGATAAGATCTATCACTTTAATCCACTCTACTAGA
ACTTTAGGGAGATAGGATATGGCTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTTGCC
ATCTTCAGTCTGCCCCACTGCAACCTCAGGGAAATAAGACTCGCTTACTTCAGTCTGCTCCACTG
CAACTTCAGGGAGATAAGACC
Found at i:18023623 original size:100 final size:100
Alignment explanation
Indices: 18023497--18023704 Score: 308
Period size: 100 Copynumber: 2.1 Consensus size: 100
18023487 ATTTGCCATA
* *
18023497 TTCAATCTTTTTAATTGCAATGTTGGGGACACAAGATTCGTCATCGTAGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTATTCCAC
* * ** *
18023562 TACTCTGTCAGGGAAGTAAGATTTTCCATTGCGGC
66 TACACTGCCAGGGAAGTAAGATTCGCCATTGCCGC
* * *
18023597 TTCAATCTTTTTAATTGCAATGTTGGGGAAACGAGATTCGCCGTTGTAGCTTCAATCTATTCCAC
1 TTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTATTCCAC
*
18023662 TACACTGCCAGGGGAGTAAGATTCGCCATTGCCGC
66 TACACTGCCAGGGAAGTAAGATTCGCCATTGCCGC
*
18023697 TTTAATCT
1 TTCAATCT
18023705 GCTCCACTGT
Statistics
Matches: 96, Mismatches: 12, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
100 96 1.00
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (100 bp):
TTCAATCTTTTTAATTGCAATGTTGGGGAAACAAGATTCGCCATCGTAGCTTCAATCTATTCCAC
TACACTGCCAGGGAAGTAAGATTCGCCATTGCCGC
Found at i:18032049 original size:29 final size:29
Alignment explanation
Indices: 18032007--18032064 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
18031997 ATGCTGAGGG
18032007 GTAAAGCCTGGGGGATAAACAGGTCCCTC
1 GTAAAGCCTGGGGGATAAACAGGTCCCTC
18032036 GTAAAGCCTGGGGGATAAACAGGTCCCTC
1 GTAAAGCCTGGGGGATAAACAGGTCCCTC
18032065 ACTGTCTCCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.28, C:0.24, G:0.31, T:0.17
Consensus pattern (29 bp):
GTAAAGCCTGGGGGATAAACAGGTCCCTC
Found at i:18032501 original size:19 final size:20
Alignment explanation
Indices: 18032464--18032501 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
18032454 TTTAAGAAAA
*
18032464 CTTTACTATAAATTAAATTT
1 CTTTACTATAAAGTAAATTT
*
18032484 CTTTAC-ATAAAGTGAATT
1 CTTTACTATAAAGTAAATT
18032502 ACAAATAAAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 10 0.62
20 6 0.38
ACGTcount: A:0.39, C:0.11, G:0.05, T:0.45
Consensus pattern (20 bp):
CTTTACTATAAAGTAAATTT
Found at i:18035238 original size:323 final size:322
Alignment explanation
Indices: 18034650--18035295 Score: 1242
Period size: 323 Copynumber: 2.0 Consensus size: 322
18034640 AACACAAAAA
18034650 TTCAGTATCATGTATACACATTGAAAGTAATCAAACAATAGTAAAAGCACCTATTCAAGTACCTA
1 TTCAGTATCATGTATACACATTGAAAGTAATCAAACAATAGTAAAAGCACCTATTCAAGTACCTA
18034715 CTAGGGTTTAGTGTAGCTCTACCTAGGGTGGATTCCTAAGGTTCATTATATGAGGTTCGGCTTCC
66 CTAGGGTTTAGTGTAGCTCTACCTAGGGTGGATTCCTAAGGTTCATTATATGAGGTTCGGCTTCC
18034780 AGGGCAAAGGTACCCGAACCAGCAGATTCCTCGATCTTCACCCACTATACGCTCATATAGATCAA
131 AGGGCAAAGGTACCCGAACCAGCAGATTCCTCGATCTTCACCCACTATACGCTCATATAGATCAA
18034845 GTTCGGTTCAGGGGAATACATTTTCCCTATGACTATACGGAGATGGAAATCTCACGAAGGCATAC
196 GTTCGGTTCAGGGGAATACATTTTCCCTATGACTATACGGAGATGGAAA-CTCACGAAGGCATAC
18034910 GTACATATGTATCCCGAAAGCGATCCGCTATCCTATACGGAGGTGAAAACCTCACGAAGGAAT
260 GTACATATGTATCCCGAAAGCGATCCGCTATCCTATACGGAGGTGAAAACCTCACGAAGGAAT
18034973 TTCAGTATCATGTATACACATTGAAAGTAATCAAACAATAGTAAAAGCACCTATTCAAGTACCTA
1 TTCAGTATCATGTATACACATTGAAAGTAATCAAACAATAGTAAAAGCACCTATTCAAGTACCTA
18035038 CTAGGGTTTAGTGTAGCTCTACCTAGGGTGGATTCCTAAGGTTCATTATATGAGGTTCGGCTTCC
66 CTAGGGTTTAGTGTAGCTCTACCTAGGGTGGATTCCTAAGGTTCATTATATGAGGTTCGGCTTCC
18035103 AGGGCAAAGGTACCCGAACCAGCAGATTCCTCGATCTTCACCCACTATACGCTCATATAGATCAA
131 AGGGCAAAGGTACCCGAACCAGCAGATTCCTCGATCTTCACCCACTATACGCTCATATAGATCAA
18035168 GTTCGGTTCAGGGGAATACATTTTCCCTATGACTATACGGAGGAGATGG-AA-TCACGAAGGCAT
196 GTTCGGTTCAGGGGAATACATTTTCCCTATGACTATAC---GGAGATGGAAACTCACGAAGGCAT
18035231 ACGTACATATGTATCCCGAAAGCGATCCGCTATCCTATACGGAGGTGAAAACCTCACGAAGGAAT
258 ACGTACATATGTATCCCGAAAGCGATCCGCTATCCTATACGGAGGTGAAAACCTCACGAAGGAAT
18035296 AGTTTCTCAC
Statistics
Matches: 320, Mismatches: 0, Indels: 6
0.98 0.00 0.02
Matches are distributed among these distances:
323 310 0.97
325 2 0.01
326 8 0.03
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (322 bp):
TTCAGTATCATGTATACACATTGAAAGTAATCAAACAATAGTAAAAGCACCTATTCAAGTACCTA
CTAGGGTTTAGTGTAGCTCTACCTAGGGTGGATTCCTAAGGTTCATTATATGAGGTTCGGCTTCC
AGGGCAAAGGTACCCGAACCAGCAGATTCCTCGATCTTCACCCACTATACGCTCATATAGATCAA
GTTCGGTTCAGGGGAATACATTTTCCCTATGACTATACGGAGATGGAAACTCACGAAGGCATACG
TACATATGTATCCCGAAAGCGATCCGCTATCCTATACGGAGGTGAAAACCTCACGAAGGAAT
Found at i:18036710 original size:52 final size:52
Alignment explanation
Indices: 18036601--18036720 Score: 127
Period size: 52 Copynumber: 2.3 Consensus size: 52
18036591 AAGTATGTAT
* ** * *
18036601 ATATATAAATATAATGGAATATTCAAAAAACCATAGATGTATACGTATGTAT
1 ATATATAAATATAATGGAATATTCAAAAAACAATAGATGTATACACATGAAA
* *
18036653 GTATATAAATATAATGGAATATTCAAAAAA-AATATATGCATATACACAT-AAA
1 ATATATAAATATAATGGAATATTCAAAAAACAATAGATG--TATACACATGAAA
*
18036705 ATATATTAAAAATAAT
1 ATATA-TAAATATAAT
18036721 TAAATAATAA
Statistics
Matches: 56, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
51 6 0.11
52 34 0.61
53 16 0.29
ACGTcount: A:0.53, C:0.07, G:0.08, T:0.32
Consensus pattern (52 bp):
ATATATAAATATAATGGAATATTCAAAAAACAATAGATGTATACACATGAAA
Found at i:18036819 original size:17 final size:17
Alignment explanation
Indices: 18036799--18036833 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
18036789 TAGTTTAAAA
*
18036799 AAAAATAAAATGTACAT
1 AAAAATAAAATATACAT
*
18036816 AAAAATTAAATATACAT
1 AAAAATAAAATATACAT
18036833 A
1 A
18036834 TATATATATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (17 bp):
AAAAATAAAATATACAT
Found at i:18036974 original size:34 final size:34
Alignment explanation
Indices: 18036931--18037002 Score: 144
Period size: 34 Copynumber: 2.1 Consensus size: 34
18036921 TTTTAAGAAA
18036931 AAAATATAAAAACAAACTAAATTGAACTGCAATT
1 AAAATATAAAAACAAACTAAATTGAACTGCAATT
18036965 AAAATATAAAAACAAACTAAATTGAACTGCAATT
1 AAAATATAAAAACAAACTAAATTGAACTGCAATT
18036999 AAAA
1 AAAA
18037003 AAATCTAGGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 38 1.00
ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22
Consensus pattern (34 bp):
AAAATATAAAAACAAACTAAATTGAACTGCAATT
Found at i:18046510 original size:26 final size:26
Alignment explanation
Indices: 18046474--18046525 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
18046464 AAGGTAGTGT
18046474 GAGCCCATCACATCCATGGGTCTAAA
1 GAGCCCATCACATCCATGGGTCTAAA
*
18046500 GAGCCCATCACATCCATGGTTCTAAA
1 GAGCCCATCACATCCATGGGTCTAAA
18046526 ATTAGGCCTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.31, G:0.17, T:0.21
Consensus pattern (26 bp):
GAGCCCATCACATCCATGGGTCTAAA
Found at i:18050631 original size:29 final size:29
Alignment explanation
Indices: 18050568--18050633 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 29
18050558 AGGACTTCTA
**
18050568 TTAACAGAGATGGCCACAAAGGCTTTAAT
1 TTAACAGAGATCACCACAAAGGCTTTAAT
** *
18050597 CAAACAGAGATCACCACAAAGGCTTTCAT
1 TTAACAGAGATCACCACAAAGGCTTTAAT
18050626 TTAACAGA
1 TTAACAGA
18050634 AATAGCCAAA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.41, C:0.21, G:0.17, T:0.21
Consensus pattern (29 bp):
TTAACAGAGATCACCACAAAGGCTTTAAT
Found at i:18052315 original size:41 final size:41
Alignment explanation
Indices: 18052237--18052322 Score: 100
Period size: 41 Copynumber: 2.1 Consensus size: 41
18052227 GGGGCATATT
* *
18052237 TGTGCAATTCAAGGGTACCAAAGTACAAATAAAGGCACTTA
1 TGTGCAATTCAAGGGTACCAAAGTACAAACAAAGGCACGTA
* *** **
18052278 TGTGCTATTCAAGGGTATTGAAGTACAAACAGGGGCACGTA
1 TGTGCAATTCAAGGGTACCAAAGTACAAACAAAGGCACGTA
18052319 TGTG
1 TGTG
18052323 AACTTCAGGA
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.35, C:0.15, G:0.26, T:0.24
Consensus pattern (41 bp):
TGTGCAATTCAAGGGTACCAAAGTACAAACAAAGGCACGTA
Found at i:18056046 original size:23 final size:23
Alignment explanation
Indices: 18056004--18056047 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
18055994 CTTTCTTACT
*
18056004 GTAGTAATTTTTGAGGTATTATA
1 GTAGTAATTTTCGAGGTATTATA
18056027 GTAGTAATTTTCG-GGATATTA
1 GTAGTAATTTTCGAGG-TATTA
18056048 CATTTCTCTC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 2 0.11
23 17 0.89
ACGTcount: A:0.30, C:0.02, G:0.23, T:0.45
Consensus pattern (23 bp):
GTAGTAATTTTCGAGGTATTATA
Found at i:18057663 original size:50 final size:50
Alignment explanation
Indices: 18057538--18057924 Score: 427
Period size: 50 Copynumber: 7.6 Consensus size: 50
18057528 GATAATAACA
* * * ** * * *
18057538 TGCCAAAGCCATGTTCCAGACATGGTCTTACATGAGATGTTTCCTGTAC--
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCT-CGG
* * * * ** *
18057587 TGCCAATGCCATATCCTAGATATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** *
18057637 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
18057687 TACCAACGCCATGTCCCAAACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
18057737 TGCCAACACCATGTCCCAGACATGGTCCTACATAGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
18057787 TGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* *
18057837 TGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAATCTCAATGA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC---GG
*
18057893 TGCCAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAACGCCATGTCCCAGACATGGTCTTACA
18057925 NNNNNNNNNN
Statistics
Matches: 286, Mismatches: 44, Indels: 9
0.84 0.13 0.03
Matches are distributed among these distances:
48 1 0.00
49 36 0.13
50 213 0.74
53 5 0.02
56 31 0.11
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:18058617 original size:50 final size:50
Alignment explanation
Indices: 18058540--18058723 Score: 251
Period size: 50 Copynumber: 3.6 Consensus size: 50
18058530 NNNNNNNNNN
* * *
18058540 GGTGCCAACACCATGTCCCAGACATGGTCCTACATAGGACCTCTCATCTC
1 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTC
*
18058590 GGTGCCAACGCCATGTCCCAGATATGGTCTTACATGGGACCTCTCATCTC
1 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTC
*
18058640 GGTGCCAACGCCATATCCCAGACATGGTCTTACATGGGACCTCTCATAATCTC
1 GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC---ATCTC
* *
18058693 AATGATGCCAATGCCATGTCCCAGACATGGT
1 ---GGTGCCAACGCCATGTCCCAGACATGGT
18058724 TTAACACTGG
Statistics
Matches: 119, Mismatches: 9, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
50 89 0.75
53 5 0.04
56 25 0.21
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.24
Consensus pattern (50 bp):
GGTGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTC
Found at i:18061856 original size:28 final size:28
Alignment explanation
Indices: 18061825--18061889 Score: 130
Period size: 28 Copynumber: 2.3 Consensus size: 28
18061815 CACTAGAAAG
18061825 TTCAAGATGACATGAGGCGTGGGAACAT
1 TTCAAGATGACATGAGGCGTGGGAACAT
18061853 TTCAAGATGACATGAGGCGTGGGAACAT
1 TTCAAGATGACATGAGGCGTGGGAACAT
18061881 TTCAAGATG
1 TTCAAGATG
18061890 TTGGTTCAAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.31, T:0.23
Consensus pattern (28 bp):
TTCAAGATGACATGAGGCGTGGGAACAT
Found at i:18078903 original size:85 final size:85
Alignment explanation
Indices: 18078786--18078951 Score: 262
Period size: 85 Copynumber: 2.0 Consensus size: 85
18078776 CATTTGCGAT
* * *
18078786 GCTTTTCCCACAAATGCCGCTATAGACCATGACCTTTAGTGGCGCTTTTCCCACAAACGCCGCTA
1 GCTTTTCCCACAAACGCCACTATAGACCATGACCTTTAGCGGCGCTTTTCCCAC-AACGCCGCTA
18078851 TACACCATGACCTTTAGCAGC
65 TACACCATGACCTTTAGCAGC
* *
18078872 GCTTTTCCCACAAACG-CACTATAGACCATGACCTTTAGCGGTGCTTTTGCCACAACGCCGCTAT
1 GCTTTTCCCACAAACGCCACTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAACGCCGCTAT
*
18078936 AGACCATGACCTTTAG
66 ACACCATGACCTTTAG
18078952 TGGTGCTTTT
Statistics
Matches: 74, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
84 26 0.35
85 33 0.45
86 15 0.20
ACGTcount: A:0.25, C:0.33, G:0.17, T:0.26
Consensus pattern (85 bp):
GCTTTTCCCACAAACGCCACTATAGACCATGACCTTTAGCGGCGCTTTTCCCACAACGCCGCTAT
ACACCATGACCTTTAGCAGC
Found at i:18078907 original size:42 final size:43
Alignment explanation
Indices: 18078786--18078977 Score: 262
Period size: 43 Copynumber: 4.5 Consensus size: 43
18078776 CATTTGCGAT
* *
18078786 GCTTTTCCCACAAATGCCGCTATAGACCATGACCTTTAGTGGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
* *
18078829 GCTTTTCCCACAAACGCCGCTATACACCATGACCTTTAGCAGC
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
* *
18078872 GCTTTTCCCACAAACG-CACTATAGACCATGACCTTTAGCGGT
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
* * *
18078914 GCTTTTGCCAC-AACGCCGCTATAGACCATGACCTTTAGTGGT
1 GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
** *
18078956 GCTTTTATCATAAACGCCGCTA
1 GCTTTTCCCACAAACGCCGCTA
18078978 AAAGTACGTT
Statistics
Matches: 133, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
41 4 0.03
42 64 0.48
43 65 0.49
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.27
Consensus pattern (43 bp):
GCTTTTCCCACAAACGCCGCTATAGACCATGACCTTTAGCGGC
Found at i:18082569 original size:67 final size:67
Alignment explanation
Indices: 18082493--18082636 Score: 252
Period size: 67 Copynumber: 2.1 Consensus size: 67
18082483 AACGCTGCAA
* *
18082493 AAAATTATTTCATTTGGAATAAAACGACAATGTTTTGCTATATAAAATGGCGCTATTTTTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACAATGTTTTGCTATATAAAATGGCACTATTTTTTTAAA
18082558 GT
66 GT
*
18082560 AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCACTATTTTTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACAATGTTTTGCTATATAAAATGGCACTATTTTTTTAAA
18082625 GT
66 GT
*
18082627 AGAATTATTT
1 AAAATTATTT
18082637 TTTGTGGCGT
Statistics
Matches: 73, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
67 73 1.00
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.41
Consensus pattern (67 bp):
AAAATTATTTCATTTGGAATAAAAAGACAATGTTTTGCTATATAAAATGGCACTATTTTTTTAAA
GT
Found at i:18082723 original size:148 final size:147
Alignment explanation
Indices: 18082560--18082825 Score: 469
Period size: 148 Copynumber: 1.8 Consensus size: 147
18082550 TTTTTAAAGT
*
18082560 AAAATTATTTCATTTGGAATAAAAAGACACTGTTTTGCTATATAAAATGGCACTATTTTTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACACTATTTTGCTATATAAAATGGCACTATTTTTTTAAA
* *
18082625 GTAGAATTATTTTTTGTGGCGTTTTTTTATAAAAACGCCGCTATTGCTTACCTTTTGTGGCACTT
66 GTAAAATTATTTTTTGTGGCG-TTTTTTATAAAAACACCGCTATTGCTTACCTTTTGTGGCACTT
18082690 TTCATAAAAACGCCGCAA
130 TTCATAAAAACGCCGCAA
* * *
18082708 AAAATTATTTCATTTGGAATAAAACGACACTATTTTTCTATATAAAATGGCATTATTTTTTTAAA
1 AAAATTATTTCATTTGGAATAAAAAGACACTATTTTGCTATATAAAATGGCACTATTTTTTTAAA
18082773 GTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACACCGCTATTGCTTACCTT
66 GTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACACCGCTATTGCTTACCTT
18082826 CTACTGAAAA
Statistics
Matches: 112, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
147 31 0.28
148 81 0.72
ACGTcount: A:0.33, C:0.13, G:0.12, T:0.42
Consensus pattern (147 bp):
AAAATTATTTCATTTGGAATAAAAAGACACTATTTTGCTATATAAAATGGCACTATTTTTTTAAA
GTAAAATTATTTTTTGTGGCGTTTTTTATAAAAACACCGCTATTGCTTACCTTTTGTGGCACTTT
TCATAAAAACGCCGCAA
Found at i:18083836 original size:90 final size:90
Alignment explanation
Indices: 18083647--18083815 Score: 268
Period size: 89 Copynumber: 1.9 Consensus size: 90
18083637 CCTTAACCAT
* *
18083647 TAACCCCTAAACCTTATTTAATATATAAATTAAAAAAACAATAATTAATCTAAACACTAAACCCT
1 TAACCCCTAAACATTAGTTAATATATAAATTAAAAAAACAATAATTAATCTAAACACTAAACCCT
*
18083712 AACCCGACCCCGAATATCAAACCCC
66 AACCCGACACCGAATATCAAACCCC
* * *
18083737 TAACCCCTAAACATTAGTTAATATATAAATT-AAAACACACTAATTAATCTAAACCCTAAACCCT
1 TAACCCCTAAACATTAGTTAATATATAAATTAAAAAAACAATAATTAATCTAAACACTAAACCCT
*
18083801 AACCTGACACCGAAT
66 AACCCGACACCGAAT
18083816 CCATAAACCT
Statistics
Matches: 72, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 43 0.60
90 29 0.40
ACGTcount: A:0.46, C:0.27, G:0.03, T:0.24
Consensus pattern (90 bp):
TAACCCCTAAACATTAGTTAATATATAAATTAAAAAAACAATAATTAATCTAAACACTAAACCCT
AACCCGACACCGAATATCAAACCCC
Found at i:18083855 original size:21 final size:21
Alignment explanation
Indices: 18083831--18083872 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
18083821 AACCTTAAAT
* *
18083831 CCCTAACTCTTAACCTCTAAC
1 CCCTAACCCTTAACCCCTAAC
18083852 CCCTAACCCTTAACCCCTAAC
1 CCCTAACCCTTAACCCCTAAC
18083873 TCATAAACCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.29, C:0.48, G:0.00, T:0.24
Consensus pattern (21 bp):
CCCTAACCCTTAACCCCTAAC
Found at i:18083883 original size:21 final size:21
Alignment explanation
Indices: 18083839--18083885 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
18083829 ATCCCTAACT
* * *
18083839 CTTAACCTCTAACCCCTAACC
1 CTTAACCCCTAACCCATAAAC
*
18083860 CTTAACCCCTAACTCATAAAC
1 CTTAACCCCTAACCCATAAAC
18083881 CTTAA
1 CTTAA
18083886 ATCACAACCC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.40, G:0.00, T:0.26
Consensus pattern (21 bp):
CTTAACCCCTAACCCATAAAC
Found at i:18084356 original size:41 final size:41
Alignment explanation
Indices: 18084291--18084568 Score: 286
Period size: 41 Copynumber: 6.8 Consensus size: 41
18084281 TTTTCAAAAA
*
18084291 CGCTTCTTGGAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * *
18084332 CGCTTCTTGGAAAACACCGGTAAAGCCTCGAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * *
18084373 CGCATCTTGAAAAATGCCGCTAAAGCCACAAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * *
18084414 CGCCTCTTGAAAAATGCCACTAAAGCCCCGAGCATTAGCGA
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * *
18084455 CGCTTCTTGAAAAACGTCGCTAAAGCCTCAAGCATTAGTGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
* * * * ** *
18084496 CACTTTTTCAAAAATGCCGCTAAAGATCTGAGCATTAGCGG
1 CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
** * * *
18084537 TACTTTTTTTAAAAATGCCGCTAAAGCCCCGA
1 CGC-TTCTTGAAAAACGCCGCTAAAGCCCCGA
18084569 AAGGTACAAA
Statistics
Matches: 197, Mismatches: 39, Indels: 1
0.83 0.16 0.00
Matches are distributed among these distances:
41 173 0.88
42 24 0.12
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (41 bp):
CGCTTCTTGAAAAACGCCGCTAAAGCCCCGAGCATTAGCGG
Found at i:18084530 original size:123 final size:123
Alignment explanation
Indices: 18084295--18084568 Score: 327
Period size: 123 Copynumber: 2.2 Consensus size: 123
18084285 CAAAAACGCT
* * * * *
18084295 TCTTGGAAAACGCCGCTAAAGCCCCGAGCATTAGCGGCGCTTCTTGGAAAACACCGGTAAAGCCT
1 TCTTGAAAAATGCCGCTAAAGCCCCGAGCATTAGCGACGCTTCTTGAAAAACACCGCTAAAGCCT
* * * *
18084360 CGAGCATTAGCGGCGCATCTTGAAAAATGCCGCTAAAGCCACAAGCATTAGCGGCGC-C
66 CAAGCATTAGCGGCACATCTTCAAAAATGCCGCTAAAG-CACAAGCATTAGCGGCACTC
* **
18084418 TCTTGAAAAATGCCACTAAAGCCCCGAGCATTAGCGACGCTTCTTGAAAAACGTCGCTAAAGCCT
1 TCTTGAAAAATGCCGCTAAAGCCCCGAGCATTAGCGACGCTTCTTGAAAAACACCGCTAAAGCCT
* * * * * *
18084483 CAAGCATTAGTGGCACTTTTTCAAAAATGCCGCTAAAG-ATCTGAGCATTAGCGGTACTT
66 CAAGCATTAGCGGCACATCTTCAAAAATGCCGCTAAAGCA-C-AAGCATTAGCGGCACTC
* *
18084542 TTTTTAAAAATGCCGCTAAAGCCCCGA
1 TCTTGAAAAATGCCGCTAAAGCCCCGA
18084569 AAGGTACAAA
Statistics
Matches: 127, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
121 1 0.01
122 1 0.01
123 101 0.80
124 24 0.19
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (123 bp):
TCTTGAAAAATGCCGCTAAAGCCCCGAGCATTAGCGACGCTTCTTGAAAAACACCGCTAAAGCCT
CAAGCATTAGCGGCACATCTTCAAAAATGCCGCTAAAGCACAAGCATTAGCGGCACTC
Found at i:18085553 original size:50 final size:50
Alignment explanation
Indices: 18085412--18085603 Score: 163
Period size: 50 Copynumber: 3.7 Consensus size: 50
18085402 TTTTCTGTAC
* ** * * *
18085412 TGCCAATGCCATATCCCAGGTATGGTCTTACATGGGTG-TTCTCATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGG-GCCTCTCATATCGG
* * *
18085462 TGCCCATGCCATGTCCCAGACATGGTCTTATG-GGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGG-CCTCTCATATCGG
* * **
18085512 TGCCAACGCCATGTCCCAGACATGGTCTTACGTGGGGCCTCTTATAATCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGGCCTCTCAT-A--TC---GG
* *
18085568 TGCCAATGCCATGTCCCAGACTTGGTCTTACATGGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGG
18085604 ATCTCTTTAC
Statistics
Matches: 114, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
48 1 0.01
49 3 0.03
50 71 0.62
51 4 0.04
53 2 0.02
56 33 0.29
ACGTcount: A:0.20, C:0.28, G:0.23, T:0.29
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACGTGGGGCCTCTCATATCGG
Found at i:18091435 original size:21 final size:21
Alignment explanation
Indices: 18091387--18091442 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
18091377 ATCAGCACAC
*
18091387 TTAGATGCATCCACAGCAAAG
1 TTAGATGCATCCACACCAAAG
18091408 TCT-GATGCATCCACACCAGAA-
1 T-TAGATGCATCCACACCA-AAG
*
18091429 TTAGATGCAACCAC
1 TTAGATGCATCCAC
18091443 GACACTCTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 1 0.03
21 26 0.87
22 3 0.10
ACGTcount: A:0.36, C:0.29, G:0.16, T:0.20
Consensus pattern (21 bp):
TTAGATGCATCCACACCAAAG
Found at i:18116570 original size:30 final size:30
Alignment explanation
Indices: 18116534--18116590 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
18116524 TTTTCGAGCC
18116534 TAGGGGC-AAAATCATAATTTTGTGAAACTT
1 TAGGGGCAAAAAT-ATAATTTTGTGAAACTT
*
18116564 TAGGGGCAAAAATGTAATTTTGTGAAA
1 TAGGGGCAAAAATATAATTTTGTGAAA
18116591 ATGTGATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
30 20 0.80
31 5 0.20
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATATAATTTTGTGAAACTT
Found at i:18116968 original size:51 final size:52
Alignment explanation
Indices: 18116844--18116989 Score: 163
Period size: 51 Copynumber: 2.8 Consensus size: 52
18116834 CTCATGTGTA
* *
18116844 ATATAATGATAGGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACC
1 ATATAATGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACC
** * * * * *
18116896 GGAT-A-GCTTCGATCACGTGTGTAGTACTATGTGCAGGCTACTACGCGTATC
1 ATATAATG-ATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACC
* *
18116947 ATATAATGAT-GGTCACATGTGTAGTATTATGTGCCGGCTACTA
1 ATATAATGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTA
18116990 TCTGAACCGG
Statistics
Matches: 75, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
50 1 0.01
51 69 0.92
52 4 0.05
53 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.32
Consensus pattern (52 bp):
ATATAATGATAGGTCACATGTGTAGTACTATGTGCAGGCTACTACGCGTACC
Found at i:18117067 original size:46 final size:43
Alignment explanation
Indices: 18116995--18117093 Score: 119
Period size: 46 Copynumber: 2.2 Consensus size: 43
18116985 TACTATCTGA
*
18116995 ACCGGTATCATTAATTATAAGGTGGTTGCTATGTGCTG-ATCCC
1 ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAAT-CC
* *
18117038 ACCGGATATCATTGATTACAAAGGGTGGTTGCTGTGTGCTGAATCC
1 ACCGG-TATCATTAATTA-AAA-GGTGGTTGCTATGTGCTGAATCC
18117084 ACCGTGTATC
1 ACCG-GTATC
18117094 TGTTATTATT
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
43 5 0.10
44 11 0.23
45 2 0.04
46 27 0.56
47 3 0.06
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.32
Consensus pattern (43 bp):
ACCGGTATCATTAATTAAAAGGTGGTTGCTATGTGCTGAATCC
Found at i:18117238 original size:16 final size:16
Alignment explanation
Indices: 18117217--18117248 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
18117207 TGATTGAAAG
*
18117217 TGAAAAAGTTAAATTA
1 TGAAAAAGTAAAATTA
18117233 TGAAAAAGTAAAATTA
1 TGAAAAAGTAAAATTA
18117249 GCAACAAAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.59, C:0.00, G:0.12, T:0.28
Consensus pattern (16 bp):
TGAAAAAGTAAAATTA
Found at i:18120362 original size:22 final size:22
Alignment explanation
Indices: 18120336--18120380 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
18120326 ATTATATGTA
18120336 TTAATTCATAATATAA-TTAATT
1 TTAATTCAT-ATATAATTTAATT
* *
18120358 TTAATTTATATCTAATTTAATT
1 TTAATTCATATATAATTTAATT
18120380 T
1 T
18120381 AGGTTAATAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 5 0.25
22 15 0.75
ACGTcount: A:0.40, C:0.04, G:0.00, T:0.56
Consensus pattern (22 bp):
TTAATTCATATATAATTTAATT
Found at i:18121066 original size:21 final size:20
Alignment explanation
Indices: 18121021--18121066 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
18121011 TTGTTGGAAT
18121021 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
18121040 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
18121061 GGTTGA
1 GGTTGA
18121067 TTTCATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:18135153 original size:17 final size:17
Alignment explanation
Indices: 18135131--18135163 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
18135121 CACTAACATT
18135131 AAAATGCAATGACAAAA
1 AAAATGCAATGACAAAA
18135148 AAAATGCAATGACAAA
1 AAAATGCAATGACAAA
18135164 TCTGCACTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (17 bp):
AAAATGCAATGACAAAA
Found at i:18138061 original size:15 final size:15
Alignment explanation
Indices: 18138041--18138072 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
18138031 CTTAAGAATG
18138041 TTTTTAATTTGTCGA
1 TTTTTAATTTGTCGA
18138056 TTTTTAATTTGTCGA
1 TTTTTAATTTGTCGA
18138071 TT
1 TT
18138073 CGATACTTCG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (15 bp):
TTTTTAATTTGTCGA
Found at i:18140647 original size:27 final size:27
Alignment explanation
Indices: 18140469--18140639 Score: 202
Period size: 27 Copynumber: 6.3 Consensus size: 27
18140459 AATTCATGGC
* *
18140469 AAATGACCGAAATACCCTCGATGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
* *
18140496 AAATGACTGAAATACCCCCAAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
** * *
18140523 AAATGACCAAAATAACTTCGAAGGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
*
18140550 AAATGA-TAGAAATACCCTTGAAGGGTA
1 AAATGACT-GAAATACCCTCGAAGGGTA
* *
18140577 AAATGATTGAAATACCC-CTAATGGGTA
1 AAATGACTGAAATACCCTCGAA-GGGTA
*
18140604 AAATGACTGAAATACCCTCGAAAGGTA
1 AAATGACTGAAATACCCTCGAAGGGTA
18140631 AAATGACTG
1 AAATGACTG
18140640 TTATACCCCT
Statistics
Matches: 120, Mismatches: 20, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
26 2 0.02
27 114 0.95
28 4 0.03
ACGTcount: A:0.43, C:0.17, G:0.20, T:0.20
Consensus pattern (27 bp):
AAATGACTGAAATACCCTCGAAGGGTA
Found at i:18140647 original size:81 final size:81
Alignment explanation
Indices: 18140477--18140636 Score: 230
Period size: 81 Copynumber: 2.0 Consensus size: 81
18140467 GCAAATGACC
* *
18140477 GAAATACCCTCGATGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGACCAAAATAACTTC
1 GAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGACCAAAATAACCTC
*
18140542 GAAGGGTAAAATGATA
66 GAAAGGTAAAATGATA
* * * * ** *
18140558 GAAATACCCTTGAAGGGTAAAATGATTGAAATACCCCTAATGGGTAAAATGACTGAAATACCCTC
1 GAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGACCAAAATAACCTC
18140623 GAAAGGTAAAATGA
66 GAAAGGTAAAATGA
18140637 CTGTTATACC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
81 69 1.00
ACGTcount: A:0.44, C:0.16, G:0.20, T:0.20
Consensus pattern (81 bp):
GAAATACCCTCGAAGGGTAAAATGACTGAAATACCCCCAAAGGGTAAAATGACCAAAATAACCTC
GAAAGGTAAAATGATA
Found at i:18140832 original size:27 final size:27
Alignment explanation
Indices: 18140787--18140860 Score: 80
Period size: 26 Copynumber: 2.8 Consensus size: 27
18140777 ATAGGGGAAG
*
18140787 TATACTG-TACTGGTGGCTTTGCCACA
1 TATACTGTTACTGGTAGCTTTGCCACA
* ***
18140813 TATACTGTTACTGGAAGCTTTGTTGCA
1 TATACTGTTACTGGTAGCTTTGCCACA
*
18140840 T-TACTGTTATTGGTAGCTTTG
1 TATACTGTTACTGGTAGCTTTG
18140861 TTGTGTTACT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
26 25 0.62
27 15 0.38
ACGTcount: A:0.19, C:0.16, G:0.23, T:0.42
Consensus pattern (27 bp):
TATACTGTTACTGGTAGCTTTGCCACA
Found at i:18140894 original size:26 final size:26
Alignment explanation
Indices: 18140815--18140910 Score: 113
Period size: 26 Copynumber: 3.7 Consensus size: 26
18140805 TTGCCACATA
* *
18140815 TACTGTTACTGGAAGCTTTGTTGCAT
1 TACTGTTACTGGCAGCTTTGTTGCGT
* * *
18140841 TACTGTTATTGGTAGCTTTGTTGTGT
1 TACTGTTACTGGCAGCTTTGTTGCGT
*
18140867 TACTGTTACTGGCAGCTTTGCTGCGT
1 TACTGTTACTGGCAGCTTTGTTGCGT
* *
18140893 TATTATT-CTGGCAGCTTT
1 TACTGTTACTGGCAGCTTT
18140911 ACTCGATATT
Statistics
Matches: 60, Mismatches: 10, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
25 11 0.18
26 49 0.82
ACGTcount: A:0.15, C:0.16, G:0.24, T:0.46
Consensus pattern (26 bp):
TACTGTTACTGGCAGCTTTGTTGCGT
Found at i:18141892 original size:17 final size:18
Alignment explanation
Indices: 18141867--18141900 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
18141857 TTGTTAGAGT
18141867 AAACAG-AAATTGTAGGA
1 AAACAGAAAATTGTAGGA
*
18141884 AAACTGAAAATTGTAGG
1 AAACAGAAAATTGTAGG
18141901 GAGACTCTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.50, C:0.06, G:0.24, T:0.21
Consensus pattern (18 bp):
AAACAGAAAATTGTAGGA
Found at i:18148023 original size:27 final size:27
Alignment explanation
Indices: 18147991--18148252 Score: 271
Period size: 27 Copynumber: 9.7 Consensus size: 27
18147981 AATTTATGGG
* *
18147991 AAAATGACTGTAATACCCCCGATGGGT
1 AAAATGACTGAAATACCCCCGAAGGGT
* * **
18148018 AAAATGCCTAAAATACCCTTGAAGGGT
1 AAAATGACTGAAATACCCCCGAAGGGT
*
18148045 AAAATGACTGAAATACCCCAGATA-GGT
1 AAAATGACTGAAATACCCCCGA-AGGGT
*
18148072 AAAATGACTGAAAGACCCCCGAAGGGT
1 AAAATGACTGAAATACCCCCGAAGGGT
* * * *
18148099 AAAAT-AATCGAAATACCCTCAAAGGTT
1 AAAATGACT-GAAATACCCCCGAAGGGT
** ** *
18148126 AAAATGACCAAAATACCCTTGATGGGT
1 AAAATGACTGAAATACCCCCGAAGGGT
*
18148153 AAAATGACTGAAATACCCTCGAAGGGT
1 AAAATGACTGAAATACCCCCGAAGGGT
18148180 AAAATGACTGAAATACCCCC-AATGGGT
1 AAAATGACTGAAATACCCCCGAA-GGGT
18148207 AAAATGA-TCGAAATACCCCCGAAGGGT
1 AAAATGACT-GAAATACCCCCGAAGGGT
* **
18148234 AAAACGACTGTTATACCCC
1 AAAATGACTGAAATACCCC
18148253 TAGGAGTTGA
Statistics
Matches: 195, Mismatches: 32, Indels: 16
0.80 0.13 0.07
Matches are distributed among these distances:
26 6 0.03
27 184 0.94
28 5 0.03
ACGTcount: A:0.41, C:0.21, G:0.19, T:0.19
Consensus pattern (27 bp):
AAAATGACTGAAATACCCCCGAAGGGT
Found at i:18148453 original size:26 final size:25
Alignment explanation
Indices: 18148418--18148486 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 25
18148408 TTGCCACATA
*
18148418 TACTACTACTAGCAGCTTCGCTGCGT
1 TACTATTACTAGCAGCTT-GCTGCGT
* *
18148444 TACTATTACTTGCAACATTGCTGCGT
1 TACTATTACTAGCAGC-TTGCTGCGT
* *
18148470 TATTATT-CTGGCAGCTT
1 TACTATTACTAGCAGCTT
18148487 TACTCCGATA
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
24 2 0.06
25 6 0.17
26 26 0.72
27 2 0.06
ACGTcount: A:0.20, C:0.25, G:0.17, T:0.38
Consensus pattern (25 bp):
TACTATTACTAGCAGCTTGCTGCGT
Found at i:18151687 original size:40 final size:40
Alignment explanation
Indices: 18151626--18151722 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
18151616 AGCTAATAAC
* * * *
18151626 GAGCTC-AATGAGCAGAATTGAGCTCGTG-GAAGCTGACTT
1 GAGCTCGAATGAGCTGAATTGAGATCGAGCG-AGCTGAATT
*
18151665 GAGCTCGAATGAGCTGACTTGAGATCGAGCGAGCTGAATT
1 GAGCTCGAATGAGCTGAATTGAGATCGAGCGAGCTGAATT
*
18151705 GAGCTCGAGTGAGCTGAA
1 GAGCTCGAATGAGCTGAA
18151723 CCGCATGGAA
Statistics
Matches: 49, Mismatches: 7, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
39 6 0.12
40 42 0.86
41 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.33, T:0.22
Consensus pattern (40 bp):
GAGCTCGAATGAGCTGAATTGAGATCGAGCGAGCTGAATT
Found at i:18151722 original size:20 final size:20
Alignment explanation
Indices: 18151634--18151722 Score: 99
Period size: 20 Copynumber: 4.5 Consensus size: 20
18151624 ACGAGCTCAA
* *
18151634 TGAGCAGAATTGAGCTCGTG
1 TGAGCTGAATTGAGCTCGAG
* *
18151654 -GAAGCTGACTTGAGCTCGAA
1 TG-AGCTGAATTGAGCTCGAG
* *
18151674 TGAGCTGACTTGAGATCGAG
1 TGAGCTGAATTGAGCTCGAG
*
18151694 CGAGCTGAATTGAGCTCGAG
1 TGAGCTGAATTGAGCTCGAG
18151714 TGAGCTGAA
1 TGAGCTGAA
18151723 CCGCATGGAA
Statistics
Matches: 57, Mismatches: 10, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
19 1 0.02
20 55 0.96
21 1 0.02
ACGTcount: A:0.27, C:0.17, G:0.34, T:0.22
Consensus pattern (20 bp):
TGAGCTGAATTGAGCTCGAG
Found at i:18169307 original size:41 final size:40
Alignment explanation
Indices: 18169227--18169311 Score: 118
Period size: 41 Copynumber: 2.1 Consensus size: 40
18169217 TTTAAAGCAA
*
18169227 TTTTTGTTTTCTCTCCTAGTAAACACAAAATGTTCTCTTT
1 TTTTTGTTTTCTCTCCTACTAAACACAAAATGTTCTCTTT
* *
18169267 CTTTTTGTTTTCTCTTCTACTAAACACAAAAAT-TTGTCTTT
1 -TTTTTGTTTTCTCTCCTACTAAACAC-AAAATGTTCTCTTT
18169308 TTTT
1 TTTT
18169312 CTTTTTCGGT
Statistics
Matches: 40, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
40 4 0.10
41 31 0.77
42 5 0.12
ACGTcount: A:0.22, C:0.19, G:0.06, T:0.53
Consensus pattern (40 bp):
TTTTTGTTTTCTCTCCTACTAAACACAAAATGTTCTCTTT
Found at i:18170877 original size:21 final size:21
Alignment explanation
Indices: 18170851--18170890 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
18170841 CTGTTGAGGA
18170851 TATACGTCTGTTATAGTAGAG
1 TATACGTCTGTTATAGTAGAG
18170872 TATACGTCTGTTATAGTAG
1 TATACGTCTGTTATAGTAG
18170891 TATTTATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (21 bp):
TATACGTCTGTTATAGTAGAG
Found at i:18172963 original size:21 final size:21
Alignment explanation
Indices: 18172937--18172976 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
18172927 ATGTTGAGGA
18172937 TATACGTCTGTTATAGTAGAG
1 TATACGTCTGTTATAGTAGAG
18172958 TATACGTCTGTTATAGTAG
1 TATACGTCTGTTATAGTAG
18172977 TATTTATGCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (21 bp):
TATACGTCTGTTATAGTAGAG
Found at i:18177664 original size:48 final size:48
Alignment explanation
Indices: 18177602--18177712 Score: 143
Period size: 48 Copynumber: 2.3 Consensus size: 48
18177592 TATCGTCAAT
**
18177602 TATGTGGTTTCTTGTCCACGATGTGTTATACGACCGTCTATC-GATATC
1 TATGTGGTGGCTTGTCCACGATGTGTTATACGACCGTCTATCAG-TATC
** * *
18177650 TATGTGGTGGCTTGTCCACGATGTGTTATTTGACTGTTTATCAGTATC
1 TATGTGGTGGCTTGTCCACGATGTGTTATACGACCGTCTATCAGTATC
*
18177698 TGTGTGGTGGCTTGT
1 TATGTGGTGGCTTGT
18177713 TCACAAATAG
Statistics
Matches: 55, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 54 0.98
49 1 0.02
ACGTcount: A:0.15, C:0.16, G:0.26, T:0.42
Consensus pattern (48 bp):
TATGTGGTGGCTTGTCCACGATGTGTTATACGACCGTCTATCAGTATC
Found at i:18182013 original size:13 final size:14
Alignment explanation
Indices: 18181982--18182014 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
18181972 GGTAGGTAAG
18181982 TAAATTTTATACAT
1 TAAATTTTATACAT
*
18181996 TAAATTTTA-ACGT
1 TAAATTTTATACAT
18182009 TAAATT
1 TAAATT
18182015 AATAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 9 0.50
14 9 0.50
ACGTcount: A:0.42, C:0.06, G:0.03, T:0.48
Consensus pattern (14 bp):
TAAATTTTATACAT
Found at i:18187637 original size:22 final size:22
Alignment explanation
Indices: 18187609--18187657 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
18187599 TAGATTCAAT
18187609 AAAAAAATCAAA-AACAAAAAAG
1 AAAAAAATCAAAGAA-AAAAAAG
*
18187631 AAAAAAATCAAAGTAAAAAAAG
1 AAAAAAATCAAAGAAAAAAAAG
18187653 AAAAA
1 AAAAA
18187658 GAAAAATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 24 0.96
23 1 0.04
ACGTcount: A:0.82, C:0.06, G:0.06, T:0.06
Consensus pattern (22 bp):
AAAAAAATCAAAGAAAAAAAAG
Found at i:18187662 original size:5 final size:6
Alignment explanation
Indices: 18187647--18187727 Score: 58
Period size: 6 Copynumber: 12.7 Consensus size: 6
18187637 ATCAAAGTAA
* * *
18187647 AAAAAG AAAAAG AAAAATC AACTCAAAG ACAAAATG AAAATG AAAATG
1 AAAAAG AAAAAG AAAAA-G AA---AAAG A-AAAA-G AAAAAG AAAAAG
18187695 -AAAA- AAAAAG AAAAAG AAAAAGG AAAAAG AAAA
1 AAAAAG AAAAAG AAAAAG AAAAA-G AAAAAG AAAA
18187728 GGAGAGGCCA
Statistics
Matches: 62, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
5 7 0.11
6 34 0.55
7 14 0.23
8 2 0.03
9 1 0.02
10 4 0.06
ACGTcount: A:0.75, C:0.05, G:0.14, T:0.06
Consensus pattern (6 bp):
AAAAAG
Found at i:18187662 original size:12 final size:13
Alignment explanation
Indices: 18187646--18187727 Score: 64
Period size: 13 Copynumber: 6.3 Consensus size: 13
18187636 AATCAAAGTA
*
18187646 AAAAAAGAAAAAG
1 AAAAATGAAAAAG
*
18187659 AAAAATCAACTCAAAG
1 AAAAATGAA---AAAG
*
18187675 ACAAAATGAAAATG
1 A-AAAATGAAAAAG
18187689 -AAAATG-AAAA-
1 AAAAATGAAAAAG
18187699 AAAAA-GAAAAAG
1 AAAAATGAAAAAG
*
18187711 AAAAAGGAAAAAG
1 AAAAATGAAAAAG
18187724 AAAA
1 AAAA
18187728 GGAGAGGCCA
Statistics
Matches: 56, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
10 1 0.02
11 11 0.20
12 11 0.20
13 18 0.32
14 3 0.05
16 5 0.09
17 7 0.12
ACGTcount: A:0.76, C:0.05, G:0.13, T:0.06
Consensus pattern (13 bp):
AAAAATGAAAAAG
Found at i:18188604 original size:13 final size:13
Alignment explanation
Indices: 18188588--18188615 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
18188578 AAAAAAAAAG
18188588 AAATGAAAATGAA
1 AAATGAAAATGAA
18188601 AAATGAAAATGAA
1 AAATGAAAATGAA
18188614 AA
1 AA
18188616 GTAATGACGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.14, T:0.14
Consensus pattern (13 bp):
AAATGAAAATGAA
Found at i:18190097 original size:88 final size:87
Alignment explanation
Indices: 18189820--18190571 Score: 866
Period size: 88 Copynumber: 8.6 Consensus size: 87
18189810 AACAGATCAA
* * ** * *
18189820 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC-AAAAGCAAAACCTTGCAT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * *
18189884 CCAACGGTTACAGTGGAGCGGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * ****
18189907 TAAAGATAGCAGATCTTACCTTCCTGCATTGACAACGAAGCAGATCGAA-AATGAAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
18189971 CCCTCGGTTGTAGTGGAGCAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
18189994 TAAAGATAGCAGATCTTGCCTTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
18190059 CCATTGGTTGCAGTGGAACAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * * *
18190082 TAAATATGGCAGATCTTGCCTTTCTGCATAGACAGTGAAGCAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
*
18190147 CCAAT-GGTTGCAGTGGAGCGGGT
65 CC-ATCGGTTGCAGTGGAGCAGGT
* * * * **
18190170 TAAATATAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAA-AACAAAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * * *
18190234 CCATCTGTAGTAGTGGAGCGGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * *
18190257 TAAAGATAGTAGATCTTGCAC-TCCTGCGCTGATAGCGAAGCAGATCGAAGACCCCAGCCTTGCC
1 TAAAGATAGCAGATCTTGC-CTTCCTGC-ATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCC
* *
18190321 TCCATCGGTTACAGTGGAGCGGGT
64 TCCATCGGTTGCAGTGGAGCAGGT
* **
18190345 TAAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * * *
18190410 CCCTCAGTTGCAATGGAACAGGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * *
18190433 TAAAGATAGCAGATCTTGCCCTCCTGCGCTGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGC-ATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* *
18190498 CCCTCGGTTGCAGTGGAGCACGT
65 CCATCGGTTGCAGTGGAGCAGGT
* * * * *
18190521 TGAAGATAGCAGATCTTGCTTTCCTTCATCGACAGTGAAGTAGATCGAAGA
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGA
18190572 TTACAAGTCC
Statistics
Matches: 573, Mismatches: 79, Indels: 25
0.85 0.12 0.04
Matches are distributed among these distances:
86 3 0.01
87 188 0.33
88 379 0.66
89 3 0.01
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (87 bp):
TAAAGATAGCAGATCTTGCCTTCCTGCATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTC
CATCGGTTGCAGTGGAGCAGGT
Found at i:18190361 original size:263 final size:262
Alignment explanation
Indices: 18189820--18190571 Score: 954
Period size: 263 Copynumber: 2.9 Consensus size: 262
18189810 AACAGATCAA
* * ** * *
18189820 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC-AAAAGCAAAACCTTGCAT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * * *
18189884 CCAACGGTTACAGTGGAGCGGGTTAAAGATAGCAGATCTTACCTTCCTGCATTGACAACGAAGCA
65 CCAATGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
**
18189949 GATCGAAAATGAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
130 GATCGAAAACAAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
* *
18190014 TTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATTGGTTGCAGTGGAACA
195 TTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGGAACA
18190079 GGT
260 GGT
* * * *
18190082 TAAATATGGCAGATCTTGCCTTTCTGCATAGACAGTGAAGCAGATCGAAGACCCCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCAT-GACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * *
18190147 CCAATGGTTGCAGTGGAGCGGGTTAAATATAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTA
65 CCAATGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCA
* * * * *
18190212 GATCGAAAACAAAGCCTTGCCTCCATCTGTAGTAGTGGAGCGGGTTAAAGATAGTAGATCTTGCA
130 GATCGAAAACAAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGC-
* * *
18190277 C-TCCTGCGCT-GATAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGGAG
194 CTTCCTGC-ATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGGAA
*
18190340 CGGGT
258 CAGGT
* **
18190345 TAAAGATAGCAGATCTTGCCTTCCTACACTGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCA-TGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCT
* * * * * * **
18190410 CC-CTCAGTTGCAATGGAACAGGTTAAAGATAGCAGATCTTGCCCTCCTGCGCTGACAGCGAAGC
65 CCAAT-GGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGC
* * * * *
18190474 AGATCGAAGACACCAGCCTTGCCTCCCTCGGTTGCAGTGGAGCACGTTGAAGATAGCAGATCTTG
129 AGATCGAAAACA-AAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTG
* * * * *
18190539 CTTTCCTTCATCGACAGTGAAGTAGATCGAAGA
193 CCTTCCTGCATAGACAGCGAAGCAGATCGAAGA
18190572 TTACAAGTCC
Statistics
Matches: 417, Mismatches: 64, Indels: 16
0.84 0.13 0.03
Matches are distributed among these distances:
261 1 0.00
262 41 0.10
263 305 0.73
264 70 0.17
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (262 bp):
TAAAGATAGCAGATCTTGCCTTCCTGCATGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTC
CAATGGTTGCAGTGGAGCGGGTTAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAG
ATCGAAAACAAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCCT
TCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGGAACAG
GT
Found at i:18190475 original size:351 final size:351
Alignment explanation
Indices: 18189820--18190569 Score: 1001
Period size: 351 Copynumber: 2.1 Consensus size: 351
18189810 AACAGATCAA
*
18189820 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATC-AAAAGCAAAACCTTGCAT
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAAAGCAAAACCTTGCAT
*
18189884 CCAACGGTTACAGTGGAGCGGGTTAAAGATAGCAGATCTTACCTTCCTGCATTGACAACGAAGCA
66 CCAACGGTTACAGTGGAGCGGGTTAAAGATAGCAGATCTTACCTTCCTGCACTGACAACGAAGCA
** * **
18189949 GATCGAAAATGAAGCCTTGCCTCCCTCGGTTGTAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
131 GATCGAAAACCAAGCCTTGCCTCCATCGGTTACAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
* * ** *
18190014 TTCCTGCATAGACAGCGAAGCAGATCGAAGACCCCAGCCTTGCCTCCATTGGTTGCAGTGGAACA
196 TTCCTACATAGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCATCAGTTGCAATGGAACA
* * * * * *
18190079 GGTTAAATATGGCAGATCTTGCCTTTCTGCATAGACAGTGAAGCAGATCGAAGACCCCAGCCTTG
261 GGTTAAAGATAGCAGATCTTGCCCTCCTGCATAGACAGCGAAGCAGATCGAAGACACCAGCCTTG
**
18190144 CCTCCAAT-GGTTGCAGTGGAGCGGGT
326 CCTCC-ATCGGTTGCAGTGGAGCACGT
* * * *
18190170 TAAATATAACAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAAA-CAAAGCCTTGCCT
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAAAGCAAAACCTTGCAT
* * * * * * * *
18190234 CCATCTG-TAGTAGTGGAGCGGGTTAAAGATAGTAGATCTTGCAC-TCCTGCGCTGATAGCGAAG
66 CCAACGGTTA-CAGTGGAGCGGGTTAAAGATAGCAGATCTTAC-CTTCCTGCACTGACAACGAAG
* * *
18190297 CAGATCGAAGACCCCAGCCTTGCCTCCATCGGTTACAGTGGAGCGGGTTAAAGATAGCAGATCTT
129 CAGATCGAA-AACCAAGCCTTGCCTCCATCGGTTACAGTGGAGCAGGTTAAAGATAGCAGATCTT
* *
18190362 GCCTTCCTACACT-GACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTCAGTTGCAATGG
193 GCCTTCCTACA-TAGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCATCAGTTGCAATGG
*
18190426 AACAGGTTAAAGATAGCAGATCTTGCCCTCCTGCGCT-GACAGCGAAGCAGATCGAAGACACCAG
257 AACAGGTTAAAGATAGCAGATCTTGCCCTCCTGC-ATAGACAGCGAAGCAGATCGAAGACACCAG
*
18190490 CCTTGCCTCCCTCGGTTGCAGTGGAGCACGT
321 CCTTGCCTCCATCGGTTGCAGTGGAGCACGT
* * * * *
18190521 TGAAGATAGCAGATCTTGCTTTCCTTCATCGACAGTGAAGTAGATCGAA
1 TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAA
18190570 GATTACAAGT
Statistics
Matches: 347, Mismatches: 46, Indels: 13
0.85 0.11 0.03
Matches are distributed among these distances:
349 2 0.01
350 113 0.33
351 230 0.66
352 2 0.01
ACGTcount: A:0.28, C:0.25, G:0.25, T:0.23
Consensus pattern (351 bp):
TAAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGTAGATCGAAAAGCAAAACCTTGCAT
CCAACGGTTACAGTGGAGCGGGTTAAAGATAGCAGATCTTACCTTCCTGCACTGACAACGAAGCA
GATCGAAAACCAAGCCTTGCCTCCATCGGTTACAGTGGAGCAGGTTAAAGATAGCAGATCTTGCC
TTCCTACATAGACAGCGAAGCAGATCGAAGACACCAGCCTTGCCTCCATCAGTTGCAATGGAACA
GGTTAAAGATAGCAGATCTTGCCCTCCTGCATAGACAGCGAAGCAGATCGAAGACACCAGCCTTG
CCTCCATCGGTTGCAGTGGAGCACGT
Found at i:18190539 original size:44 final size:43
Alignment explanation
Indices: 18190315--18190539 Score: 118
Period size: 44 Copynumber: 5.1 Consensus size: 43
18190305 AGACCCCAGC
* * * *
18190315 CTTGCCTCCATCGGTTACAGTGGAGCGGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGC-AGTTGAAGATAGCAGAT
* ** * * * * *
18190359 CTTGCCTTCCTAC-ACTGACAGCGAAGCAGATCGAAGATACCAG-C
1 CTTGCCTCCCT-CGGTTG-CAGTGGAGCAG-TTGAAGATAGCAGAT
* * * *
18190403 CTTGCCTCCCTCAGTTGCAATGGAACAGGTTAAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCA-GTTGAAGATAGCAGAT
* * * * * * *
18190447 CTTGCC-CTCCT-GCGCTGACAGCGAAGCAGATCGAAGACACCAG-C
1 CTTGCCTC-CCTCG-GTTG-CAGTGGAGCAG-TTGAAGATAGCAGAT
18190491 CTTGCCTCCCTCGGTTGCAGTGGAGCACGTTGAAGATAGCAGAT
1 CTTGCCTCCCTCGGTTGCAGTGGAGCA-GTTGAAGATAGCAGAT
18190535 CTTGC
1 CTTGC
18190540 TTTCCTTCAT
Statistics
Matches: 126, Mismatches: 41, Indels: 28
0.65 0.21 0.14
Matches are distributed among these distances:
43 36 0.29
44 55 0.44
45 35 0.28
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (43 bp):
CTTGCCTCCCTCGGTTGCAGTGGAGCAGTTGAAGATAGCAGAT
Done.