Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 61 of 163
Found at i:20054096 original size:82 final size:82
Alignment explanation
Indices: 20054001--20054293 Score: 356
Period size: 82 Copynumber: 3.6 Consensus size: 82
20053991 GCCACTATCG
* * *
20054001 CCCTGAACATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAATCATTAGTGACGCTTTCT
1 CCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAATCATTAGCGGCGCTTTCT
20054066 AAAAAACGCCGCTAAAA
66 AAAAAACGCCGCTAAAA
* * * * * *
20054083 CCATGAGCATTAGCGGCGCTTCTCCAAAAACACCGCTAAAGACCCGATCATTAGCGGCGCTTTTT
1 CCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAATCATTAGCGGCGCTTTCT
* **
20054148 AAAAAACACCATTAAAA
66 AAAAAACGCCGCTAAAA
* * * * * *
20054165 CCCTAAGCATTAGCGGCGCCTATTCAAAAACGCCGCTAAA-TCCCTGAGCATTAGCGGCGCTTTA
1 CCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCC-AATCATTAGCGGCGCTTT-
20054229 C-AAAAAACGCCGCTAAAA
64 CTAAAAAACGCCGCTAAAA
* * * *
20054247 CCCTGAGCATTAGCGGTGCTTTTTAAAAAACGCCACTAAAGCCCCAA
1 CCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAA
20054294 AAACTAAAAA
Statistics
Matches: 176, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
81 3 0.02
82 170 0.97
83 3 0.02
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (82 bp):
CCCTGAGCATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAATCATTAGCGGCGCTTTCT
AAAAAACGCCGCTAAAA
Found at i:20054176 original size:123 final size:123
Alignment explanation
Indices: 20054001--20054293 Score: 371
Period size: 123 Copynumber: 2.4 Consensus size: 123
20053991 GCCACTATCG
* * * * *
20054001 CCCTGAACATTAGCGGCGCTTTTTCAAAAACGCCGCTAAAGACCCAATCATTAGTGACG-CT-TT
1 CCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCACTAAAGACCCAAGCATTAGCGACGCCTATT
*
20054064 CTAAAAAACGCCGCTAAAACCATGAGCATTAGCGGCGCTTCT-CCAAAAACACCGCTAAAGA
66 C--AAAAACGCCGCTAAAACCATGAGCATTAGCGGCGCTT-TACAAAAAACACCGCTAAA-A
* * * *
20054125 CCC-GATCATTAGCGGCGCTTTTTAAAAAACACCATTAAA-ACCCTAAGCATTAGCGGCGCCTAT
1 CCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCACTAAAGACCC-AAGCATTAGCGACGCCTAT
* * *
20054188 TCAAAAACGCCGCTAAATCCCTGAGCATTAGCGGCGCTTTACAAAAAACGCCGCTAAAA
65 TCAAAAACGCCGCTAAAACCATGAGCATTAGCGGCGCTTTACAAAAAACACCGCTAAAA
* *
20054247 CCCTGAGCATTAGCGGTGCTTTTTAAAAAACGCCACTAAAGCCCCAA
1 CCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCACTAAAGACCCAA
20054294 AAACTAAAAA
Statistics
Matches: 146, Mismatches: 17, Indels: 13
0.83 0.10 0.07
Matches are distributed among these distances:
122 9 0.06
123 126 0.86
124 8 0.05
125 3 0.02
ACGTcount: A:0.34, C:0.29, G:0.17, T:0.20
Consensus pattern (123 bp):
CCCTGAGCATTAGCGGCGCTTTTTAAAAAACGCCACTAAAGACCCAAGCATTAGCGACGCCTATT
CAAAAACGCCGCTAAAACCATGAGCATTAGCGGCGCTTTACAAAAAACACCGCTAAAA
Found at i:20054335 original size:13 final size:13
Alignment explanation
Indices: 20054317--20054342 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
20054307 GACGTCGTTG
20054317 GCGGCATTTTTTA
1 GCGGCATTTTTTA
20054330 GCGGCATTTTTTA
1 GCGGCATTTTTTA
20054343 AAAGCGCCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (13 bp):
GCGGCATTTTTTA
Found at i:20057371 original size:28 final size:28
Alignment explanation
Indices: 20057298--20057413 Score: 124
Period size: 30 Copynumber: 3.9 Consensus size: 28
20057288 ATACAATATG
* *
20057298 TAGTAACAGTCTGGGCCTGAGCCCTATTCA
1 TAGTAACAGTGTGGGCCTTAGCCC-ATT-A
*
20057328 GTAGTAGTATAGTGTGGGCCTTAGCCCATTA
1 -TAGTA--ACAGTGTGGGCCTTAGCCCATTA
*
20057359 TAGTAACAGTGTGTGGGCCTTAGCCCAATA
1 TAGTAACA--GTGTGGGCCTTAGCCCATTA
*
20057389 CAGTAACAGTGTGGGCCTTAGCCCA
1 TAGTAACAGTGTGGGCCTTAGCCCA
20057414 ATGCAGCAAT
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
28 19 0.25
30 31 0.41
31 6 0.08
32 3 0.04
33 16 0.21
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (28 bp):
TAGTAACAGTGTGGGCCTTAGCCCATTA
Found at i:20057579 original size:26 final size:25
Alignment explanation
Indices: 20057513--20057586 Score: 76
Period size: 26 Copynumber: 2.9 Consensus size: 25
20057503 AACACACCAA
*
20057513 TATCGCAGCAAAGTTGCCAGTAATAG
1 TATCGCAGCAAAGCTGCCAGT-ATAG
* * * *
20057539 GATCACAGTAGAGCTGCCAGTATCAG
1 TATCGCAGCAAAGCTGCCAGTAT-AG
*
20057565 TATCGCAGCAAAGCTACCAGTA
1 TATCGCAGCAAAGCTGCCAGTA
20057587 ACAGCATATG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
25 2 0.05
26 35 0.95
ACGTcount: A:0.34, C:0.23, G:0.23, T:0.20
Consensus pattern (25 bp):
TATCGCAGCAAAGCTGCCAGTATAG
Found at i:20057846 original size:27 final size:27
Alignment explanation
Indices: 20057816--20058211 Score: 426
Period size: 27 Copynumber: 14.7 Consensus size: 27
20057806 TTATCTCCTA
** *
20057816 GGGGTATAACAGTCATTTTACCCTAAG
1 GGGGTATTTCAGTCATTTTACCCTATG
* * * *
20057843 GGGGTATTTCGGTCATTTTATCTTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
* * *
20057870 GAGGTATTTCAGTCATTCTACCCTGTG
1 GGGGTATTTCAGTCATTTTACCCTATG
20057897 GGGGTATTT-AGGTCATTTTACCCTATG
1 GGGGTATTTCA-GTCATTTTACCCTATG
* * *
20057924 AGGGTATTTTAGTCATTCTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
20057951 AGGGTATTTC-GATCATTTTACCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* *
20057978 GGGGTATTTCGGTCATTCTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
20058005 GGGGTATTTCGGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
*
20058032 GGGGTATTTC-GATCATTTTAGCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
20058059 GGGGTATTTC-GATCATTTTACCCTATG
1 GGGGTATTTCAG-TCATTTTACCCTATG
* *
20058086 GGGATATTTC-GATCATTTTACCCTATA
1 GGGGTATTTCAG-TCATTTTACCCTATG
* *
20058113 GGGGTATTTAAGTCATTTTACCCTATA
1 GGGGTATTTCAGTCATTTTACCCTATG
*
20058140 AGGGTATTTCAGTCATTTTACCCTATG
1 GGGGTATTTCAGTCATTTTACCCTATG
** * *
20058167 GGATTAATTT-GGTCATTTTACCCTGTG
1 GGGGT-ATTTCAGTCATTTTACCCTATG
* * *
20058194 GGGCTAATTCGGTCATTT
1 GGGGTATTTCAGTCATTT
20058212 ATTGACCTCT
Statistics
Matches: 320, Mismatches: 41, Indels: 16
0.85 0.11 0.04
Matches are distributed among these distances:
26 6 0.02
27 307 0.96
28 7 0.02
ACGTcount: A:0.20, C:0.17, G:0.22, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCAGTCATTTTACCCTATG
Found at i:20060580 original size:34 final size:35
Alignment explanation
Indices: 20060512--20060584 Score: 94
Period size: 34 Copynumber: 2.1 Consensus size: 35
20060502 TAGCCTTCGG
* * * * *
20060512 TTCTTTCTTCTTTTCTTTGTGGTCGAATATTGCCT
1 TTCTTTATTCTTCTCATTGTGGCCGAATACTGCCT
20060547 TTCTTTATTCTTCTCATT-TGGCCGAATACTGCCT
1 TTCTTTATTCTTCTCATTGTGGCCGAATACTGCCT
20060581 TTCT
1 TTCT
20060585 CTCCCTTTTC
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
34 18 0.55
35 15 0.45
ACGTcount: A:0.11, C:0.23, G:0.12, T:0.53
Consensus pattern (35 bp):
TTCTTTATTCTTCTCATTGTGGCCGAATACTGCCT
Found at i:20061413 original size:27 final size:27
Alignment explanation
Indices: 20061214--20061411 Score: 256
Period size: 27 Copynumber: 7.3 Consensus size: 27
20061204 GTAATGGGCA
20061214 TAAAATGACCGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
**
20061241 TAAAATGACTAAAATACCC-CTGAAGGG
1 TAAAATGACCGAAATACCCTC-GAAGGG
**
20061268 TAAAATGAGGGAAATACCCTCGAAGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
20061295 TAAAATGACCGAAATACCC-CTGAAGGG
1 TAAAATGACCGAAATACCCTC-GAAGGG
* *
20061322 TAAAATTACCGAAATACCCTCGAAGAG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
20061349 TAAACTGACCAAAATACCCTCGAAAGG
1 TAAAATGACCGAAATACCCTCGAAGGG
* * *
20061376 TAAAATGACTGAAATACCCTTGATGGG
1 TAAAATGACCGAAATACCCTCGAAGGG
20061403 TAAAATGAC
1 TAAAATGAC
20061412 TGTTATACCC
Statistics
Matches: 147, Mismatches: 20, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
26 2 0.01
27 143 0.97
28 2 0.01
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (27 bp):
TAAAATGACCGAAATACCCTCGAAGGG
Found at i:20061813 original size:28 final size:28
Alignment explanation
Indices: 20061773--20061847 Score: 96
Period size: 28 Copynumber: 2.7 Consensus size: 28
20061763 ATTGTACTTT
20061773 TACTATATTGGGCTAAGGCCCACACTGC
1 TACTATATTGGGCTAAGGCCCACACTGC
* * *
20061801 TACTGTATTGGGCTAATGCCCACACTGT
1 TACTATATTGGGCTAAGGCCCACACTGC
* * *
20061829 TGCTATATAGGGCTCAGGC
1 TACTATATTGGGCTAAGGC
20061848 TTAGACTGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
28 39 1.00
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.28
Consensus pattern (28 bp):
TACTATATTGGGCTAAGGCCCACACTGC
Found at i:20068104 original size:34 final size:35
Alignment explanation
Indices: 20068045--20068127 Score: 105
Period size: 35 Copynumber: 2.4 Consensus size: 35
20068035 TAGCCTTTGG
* * *
20068045 TTCTTTCCTCTTTTCTTTGTGGCCGAATATTGCCT
1 TTCTTTCCTCTTCTCTCTGTGGCCGAATACTGCCT
*
20068080 TTCTTTCTTCTTCTCTCT-TGGCCGAATACTGCCT
1 TTCTTTCCTCTTCTCTCTGTGGCCGAATACTGCCT
*
20068114 TTCTCTCCCTCTTC
1 TTCT-TTCCTCTTC
20068128 ATCTATTCCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
34 19 0.46
35 22 0.54
ACGTcount: A:0.07, C:0.33, G:0.11, T:0.49
Consensus pattern (35 bp):
TTCTTTCCTCTTCTCTCTGTGGCCGAATACTGCCT
Found at i:20069016 original size:27 final size:27
Alignment explanation
Indices: 20068755--20069008 Score: 280
Period size: 27 Copynumber: 9.4 Consensus size: 27
20068745 GTAATGGGCC
** *
20068755 TAAAATGACCAAAATACCCTTGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
20068782 TAAAATGACTGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
** *
20068809 TAAAATGACTTCAATACCCCCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
** *
20068836 TAAAATGACCAAAATACCCTCAAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* * *
20068863 TAAAATGACTAAAATGCCCTAGAAAGGG
1 TAAAATGACTGAAATACCCTCG-AAGGG
* * *
20068891 TAAAAT-AATCGAAATACCCCCGAAGGA
1 TAAAATGACT-GAAATACCCTCGAAGGG
*
20068918 TAAAATTACTGAAATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
20068945 TAAACTGACCG-AATACCCTCGAAGGG
1 TAAAATGACTGAAATACCCTCGAAGGG
* *
20068971 TAAAATTA-TCAAAATACCCTCGAAGGG
1 TAAAATGACT-GAAATACCCTCGAAGGG
20068998 TAAAATGACTG
1 TAAAATGACTG
20069009 TTATACCCCT
Statistics
Matches: 188, Mismatches: 33, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.11
27 145 0.77
28 22 0.12
ACGTcount: A:0.43, C:0.20, G:0.19, T:0.19
Consensus pattern (27 bp):
TAAAATGACTGAAATACCCTCGAAGGG
Found at i:20069224 original size:26 final size:26
Alignment explanation
Indices: 20069195--20069257 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 26
20069185 GATACTGGCT
*
20069195 GCTTTGCTGCGTTACTGTTACTAGTA
1 GCTTTGCTGCGTTACTATTACTAGTA
** * * *
20069221 GCTTAACTGCATTACTATTATTGGTA
1 GCTTTGCTGCGTTACTATTACTAGTA
*
20069247 ACTTTGCTGCG
1 GCTTTGCTGCG
20069258 ATATTGGTGT
Statistics
Matches: 27, Mismatches: 10, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.19, C:0.19, G:0.21, T:0.41
Consensus pattern (26 bp):
GCTTTGCTGCGTTACTATTACTAGTA
Found at i:20079707 original size:21 final size:21
Alignment explanation
Indices: 20079683--20079724 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
20079673 AGTCGTTTTC
*
20079683 AATTAATTAACTAAACTTTAA
1 AATTAATTAACGAAACTTTAA
**
20079704 AATTTCTTAACGAAACTTTAA
1 AATTAATTAACGAAACTTTAA
20079725 TACAACCTTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.48, C:0.12, G:0.02, T:0.38
Consensus pattern (21 bp):
AATTAATTAACGAAACTTTAA
Found at i:20085801 original size:21 final size:23
Alignment explanation
Indices: 20085777--20085836 Score: 72
Period size: 21 Copynumber: 2.7 Consensus size: 23
20085767 TTATAATGGT
20085777 TATTGTATTAT-TATTCA-AATG
1 TATTGTATTATGTATTCATAATG
*
20085798 TATTTTATTATGTATTCATAATG
1 TATTGTATTATGTATTCATAATG
20085821 TAATTG-ATTGATGTAT
1 T-ATTGTATT-ATGTAT
20085837 ATCCAAATCA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
21 10 0.30
22 6 0.18
23 8 0.24
24 9 0.27
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (23 bp):
TATTGTATTATGTATTCATAATG
Found at i:20085836 original size:24 final size:22
Alignment explanation
Indices: 20085778--20085836 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 22
20085768 TATAATGGTT
20085778 ATTGTATTAT-TATTCAAATGTA
1 ATTG-ATTATGTATTCAAATGTA
* *
20085800 TTTTATTATGTATTCATAATGTA
1 ATTGATTATGTATTCA-AATGTA
20085823 ATTGATTGATGTAT
1 ATTGATT-ATGTAT
20085837 ATCCAAATCA
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 5 0.17
22 8 0.27
23 11 0.37
24 6 0.20
ACGTcount: A:0.32, C:0.03, G:0.12, T:0.53
Consensus pattern (22 bp):
ATTGATTATGTATTCAAATGTA
Found at i:20089380 original size:24 final size:24
Alignment explanation
Indices: 20089356--20089402 Score: 67
Period size: 25 Copynumber: 1.9 Consensus size: 24
20089346 AAACTACTTC
20089356 TAAAGAAAACTCAAGAGAGAATTCT
1 TAAAGAAAACTCAA-AGAGAATTCT
**
20089381 TGGAGAAAACTCAAAGAGAATT
1 TAAAGAAAACTCAAAGAGAATT
20089403 TTTCACTCAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.51, C:0.11, G:0.19, T:0.19
Consensus pattern (24 bp):
TAAAGAAAACTCAAAGAGAATTCT
Found at i:20099190 original size:33 final size:33
Alignment explanation
Indices: 20099118--20099194 Score: 93
Period size: 33 Copynumber: 2.3 Consensus size: 33
20099108 GTGTATATAT
* * * *
20099118 GTAAGACCATAGTTGGGCTTATGGCATTCTGAT
1 GTAAGACCATAGCTGGGCTTATGGCACTATGAC
20099151 GATAAGACCATAGCTGGG-TTATGGCACTATGGAC
1 G-TAAGACCATAGCTGGGCTTATGGCACTAT-GAC
20099185 GTAAGACCAT
1 GTAAGACCAT
20099195 GGTTGGACCA
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
33 20 0.53
34 18 0.47
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (33 bp):
GTAAGACCATAGCTGGGCTTATGGCACTATGAC
Found at i:20099294 original size:101 final size:102
Alignment explanation
Indices: 20099084--20099343 Score: 323
Period size: 101 Copynumber: 2.6 Consensus size: 102
20099074 TATTCAAACG
* * *
20099084 TAAGACCATGGTTGGACCATGGTAGTGTATATATGTAAGACCATAGTTGGGCTTATGGCATTCTG
1 TAAGACCATGGTTGGACCATGGCAATGTATATATATAAGACCATAGTTGGGCTTATGGCATTCTG
* * *
20099149 ATGATAAGACCATAGCTGGGTTATGGCACTATGGACG
66 ATGATAAGACCATAACTGGGTTATGGCACTATGAACA
* * *
20099186 TAAGACCATGGTTGGACCATGGCAATGTTTATATATAAGATCATAGTTGGG-TTGTGGCATTCTG
1 TAAGACCATGGTTGGACCATGGCAATGTATATATATAAGACCATAGTTGGGCTTATGGCATTCTG
* *
20099250 ATGATAAGACTATAATTGGGTTATGGCACTATGAACA
66 ATGATAAGACCATAACTGGGTTATGGCACTATGAACA
** * * * *
20099287 TAAGACCATGGCAAGG-CCATGGCAAT-T-CATATGTAAGACTATAGTTGGAC-TATGGCA
1 TAAGACCATGG-TTGGACCATGGCAATGTATATATATAAGACCATAGTTGGGCTTATGGCA
20099344 CAATAAGAAA
Statistics
Matches: 137, Mismatches: 19, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
99 23 0.17
100 1 0.01
101 65 0.47
102 48 0.35
ACGTcount: A:0.30, C:0.14, G:0.26, T:0.30
Consensus pattern (102 bp):
TAAGACCATGGTTGGACCATGGCAATGTATATATATAAGACCATAGTTGGGCTTATGGCATTCTG
ATGATAAGACCATAACTGGGTTATGGCACTATGAACA
Found at i:20104223 original size:6 final size:6
Alignment explanation
Indices: 20104212--20104245 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
20104202 TTTTAAGTTC
* *
20104212 TTTTCT TTTTCT TTTACT TTTTCG TTTTCT TTTT
1 TTTTCT TTTTCT TTTTCT TTTTCT TTTTCT TTTT
20104246 TTGTTCACTC
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.03, C:0.15, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTCT
Found at i:20104231 original size:12 final size:11
Alignment explanation
Indices: 20104209--20104245 Score: 56
Period size: 12 Copynumber: 3.2 Consensus size: 11
20104199 CTTTTTTAAG
20104209 TTCTTTTCTTT
1 TTCTTTTCTTT
20104220 TTCTTTTACTTT
1 TTCTTTT-CTTT
20104232 TTCGTTTTCTTT
1 TTC-TTTTCTTT
20104244 TT
1 TT
20104246 TTGTTCACTC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
11 7 0.29
12 13 0.54
13 4 0.17
ACGTcount: A:0.03, C:0.16, G:0.03, T:0.78
Consensus pattern (11 bp):
TTCTTTTCTTT
Found at i:20106619 original size:13 final size:13
Alignment explanation
Indices: 20106601--20106630 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
20106591 GTTGTATGAA
*
20106601 ATCAAGAGATTGG
1 ATCAAGAAATTGG
20106614 ATCAAGAAATTGG
1 ATCAAGAAATTGG
20106627 ATCA
1 ATCA
20106631 GCTCAAAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.43, C:0.10, G:0.23, T:0.23
Consensus pattern (13 bp):
ATCAAGAAATTGG
Found at i:20109478 original size:17 final size:18
Alignment explanation
Indices: 20109436--20109478 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 18
20109426 CTTTATTTTC
20109436 TTATTTATTATTCTAGTTT
1 TTATTTATTATTCTAG-TT
20109455 TTGATTTATTATTCTA-TT
1 TT-ATTTATTATTCTAGTT
20109473 TTATTT
1 TTATTT
20109479 TATTTATCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
17 4 0.17
18 4 0.17
19 2 0.09
20 13 0.57
ACGTcount: A:0.21, C:0.05, G:0.05, T:0.70
Consensus pattern (18 bp):
TTATTTATTATTCTAGTT
Found at i:20109500 original size:27 final size:26
Alignment explanation
Indices: 20109427--20109502 Score: 70
Period size: 25 Copynumber: 3.0 Consensus size: 26
20109417 ATATATCTTC
*
20109427 TTTATTT-TCTTATT-TATTATTCTAG
1 TTTATTTATCTTATTAT-TTATTTTAG
* *
20109452 TTT-TTGAT-TTATTATTCTATTTTAT
1 TTTATTTATCTTATTATT-TATTTTAG
20109477 TTTATTTATCTTAGTTATTTATTTTA
1 TTTATTTATCTTA-TTATTTATTTTA
20109503 ATTGTTTAAT
Statistics
Matches: 41, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
24 8 0.20
25 14 0.34
26 4 0.10
27 10 0.24
28 5 0.12
ACGTcount: A:0.21, C:0.05, G:0.04, T:0.70
Consensus pattern (26 bp):
TTTATTTATCTTATTATTTATTTTAG
Found at i:20117855 original size:43 final size:41
Alignment explanation
Indices: 20117771--20117911 Score: 142
Period size: 43 Copynumber: 3.4 Consensus size: 41
20117761 CTCGAGGGAC
* ** *
20117771 CTAAGTGTTGATTCCCCGAATTATTGATTCTAAAGGTGGTTG
1 CTAAGTGTTGATTCCCCGTATCCTTGATTATAAAGG-GGTTG
*
20117813 CTAAGTGTTGATTCCACCGTATCCTTGATTGTGAAAGGGGTTG
1 CTAAGTGTTGATTCC-CCGTATCCTTGATTAT-AAAGGGGTTG
* * *
20117856 CTATGTGTTGATTCCCCGTATCAC-TGAATAT-AAGTTGGTTG
1 CTAAGTGTTGATTCCCCGTATC-CTTGATTATAAAG-GGGTTG
*
20117897 CTAAGTGTTGGTTCC
1 CTAAGTGTTGATTCC
20117912 ACCGAGTAAC
Statistics
Matches: 85, Mismatches: 10, Indels: 9
0.82 0.10 0.09
Matches are distributed among these distances:
40 3 0.04
41 18 0.21
42 27 0.32
43 32 0.38
44 5 0.06
ACGTcount: A:0.21, C:0.16, G:0.25, T:0.38
Consensus pattern (41 bp):
CTAAGTGTTGATTCCCCGTATCCTTGATTATAAAGGGGTTG
Found at i:20125126 original size:17 final size:18
Alignment explanation
Indices: 20125104--20125137 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
20125094 ATATTAGGGG
*
20125104 AAAAAGTGT-AATTTTGC
1 AAAAAGTATGAATTTTGC
20125121 AAAAAGTATGAATTTTG
1 AAAAAGTATGAATTTTG
20125138 GACCAAATTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.44, C:0.03, G:0.18, T:0.35
Consensus pattern (18 bp):
AAAAAGTATGAATTTTGC
Found at i:20129684 original size:9 final size:9
Alignment explanation
Indices: 20129670--20129695 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
20129660 CCGTACACCT
20129670 GCAACAAAC
1 GCAACAAAC
20129679 GCAACAAAC
1 GCAACAAAC
20129688 GCAACAAA
1 GCAACAAA
20129696 GGCAGCAACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.58, C:0.31, G:0.12, T:0.00
Consensus pattern (9 bp):
GCAACAAAC
Found at i:20130713 original size:3 final size:3
Alignment explanation
Indices: 20130705--20130763 Score: 91
Period size: 3 Copynumber: 19.7 Consensus size: 3
20130695 TATAATCATA
* * *
20130705 TAT TAT TAT TTT TAT TTT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
20130753 TAT TAT TAT TA
1 TAT TAT TAT TA
20130764 CTTTTTAAAT
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:20131739 original size:27 final size:25
Alignment explanation
Indices: 20131709--20131758 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
20131699 GGGTACATTA
20131709 TCATATTCAAATTTTCTTTTTAAAAGG
1 TCATATTCAAA-TTT-TTTTTAAAAGG
**
20131736 TCATATTTTAATTTTTTTTAAAA
1 TCATATTCAAATTTTTTTTAAAA
20131759 TTTCGACATT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 9 0.43
26 3 0.14
27 9 0.43
ACGTcount: A:0.34, C:0.08, G:0.04, T:0.54
Consensus pattern (25 bp):
TCATATTCAAATTTTTTTTAAAAGG
Found at i:20137668 original size:29 final size:29
Alignment explanation
Indices: 20137626--20137703 Score: 112
Period size: 24 Copynumber: 2.9 Consensus size: 29
20137616 GGGGGACTGG
20137626 CATCTAGAAAGTATTATGTATGGATCCGC
1 CATCTAGAAAGTATTATGTATGGATCCGC
*
20137655 CATCTAGAAAG---TAT-TAT-CATCCGC
1 CATCTAGAAAGTATTATGTATGGATCCGC
20137679 CATCTAGAAAGTATTATGTATGGAT
1 CATCTAGAAAGTATTATGTATGGAT
20137704 GTAACATTTG
Statistics
Matches: 42, Mismatches: 2, Indels: 10
0.78 0.04 0.19
Matches are distributed among these distances:
24 17 0.40
25 3 0.07
26 3 0.07
27 3 0.07
28 3 0.07
29 13 0.31
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Consensus pattern (29 bp):
CATCTAGAAAGTATTATGTATGGATCCGC
Found at i:20144509 original size:16 final size:16
Alignment explanation
Indices: 20144488--20144540 Score: 72
Period size: 16 Copynumber: 3.3 Consensus size: 16
20144478 GAATAAAGGG
20144488 GTAATGGATTAGAGGC
1 GTAATGGATTAGAGGC
*
20144504 GTAATGGATCAGA-GC
1 GTAATGGATTAGAGGC
*
20144519 TGTAATGGAATAGAGGC
1 -GTAATGGATTAGAGGC
20144536 GTAAT
1 GTAAT
20144541 AGTAAATTAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 2 0.06
16 28 0.88
17 2 0.06
ACGTcount: A:0.34, C:0.08, G:0.34, T:0.25
Consensus pattern (16 bp):
GTAATGGATTAGAGGC
Found at i:20144791 original size:16 final size:16
Alignment explanation
Indices: 20144754--20144795 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
20144744 TTAATCATAT
*
20144754 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
20144770 TT-AAATATATTATAA
1 TTAAAATATATTATAA
20144785 TTAAAATATAT
1 TTAAAATATAT
20144796 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:20144802 original size:14 final size:15
Alignment explanation
Indices: 20144763--20144804 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
20144753 TTTAAACATA
*
20144763 ATTATTATTAAATAT
1 ATTATAATTAAATAT
20144778 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
20144792 A-TATAATTTAATA
1 ATTATAATTAAATA
20144805 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:20145016 original size:24 final size:25
Alignment explanation
Indices: 20144970--20145017 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 25
20144960 TATGAATTTG
20144970 TATAATTTAAAATAATAATTATTACA
1 TATAATTTAAAAT-ATAATTATTACA
20144996 TATAATTTAATAAT-TAA-TATTA
1 TATAATTTAA-AATATAATTATTA
20145018 AATTTCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 5 0.24
25 3 0.14
26 10 0.48
27 3 0.14
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (25 bp):
TATAATTTAAAATATAATTATTACA
Found at i:20145021 original size:92 final size:92
Alignment explanation
Indices: 20144925--20145153 Score: 236
Period size: 92 Copynumber: 2.5 Consensus size: 92
20144915 TGATTTAATA
* * *
20144925 AAATTT-AAAATAATT-ATAACTAATAAATTATATTTTATGAATTTGTATAATTTAAAATAA-TA
1 AAATTTCAAAA-AATTCATAA-TAATAAATTATATTATATGAATTTATACAATTTAAAATAATTA
*
20144987 ATTATTACATATAATTTAATAATTAATATT
64 A-TATTAAATATAATTTAATAATTAATATT
* * * * *
20145017 AAATTTCATAAAATTCTTGATAATAAATTTTCTTATATGAATTTATACAATTTAAAATAATTAAT
1 AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
* *
20145082 ATTAAATATAATTTAAT-AGTGATA-T
66 ATTAAATATAATTTAATAATTAATATT
* * *
20145107 ATAATTTCATAAAATTCTTAATAATAAAATGT-TCTTATATGAATTTA
1 A-AATTTCAAAAAATTCATAATAAT-AAAT-TATATTATATGAATTTA
20145154 CTAAAATCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 12
0.83 0.08 0.08
Matches are distributed among these distances:
90 2 0.02
91 27 0.23
92 81 0.68
93 9 0.08
ACGTcount: A:0.48, C:0.04, G:0.03, T:0.45
Consensus pattern (92 bp):
AAATTTCAAAAAATTCATAATAATAAATTATATTATATGAATTTATACAATTTAAAATAATTAAT
ATTAAATATAATTTAATAATTAATATT
Found at i:20152949 original size:11 final size:11
Alignment explanation
Indices: 20152933--20152975 Score: 68
Period size: 11 Copynumber: 3.9 Consensus size: 11
20152923 ACGAGATTGT
20152933 AAAAAAAATTC
1 AAAAAAAATTC
20152944 AAAAAAAATTC
1 AAAAAAAATTC
*
20152955 GAAAAAAATTC
1 AAAAAAAATTC
*
20152966 GAAAAAAATT
1 AAAAAAAATT
20152976 ATTATTTGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.70, C:0.07, G:0.05, T:0.19
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:20152962 original size:22 final size:22
Alignment explanation
Indices: 20152934--20152975 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
20152924 CGAGATTGTA
20152934 AAAAAAATTCAAAAAAAATTCG
1 AAAAAAATTCAAAAAAAATTCG
*
20152956 AAAAAAATTCGAAAAAAATT
1 AAAAAAATTCAAAAAAAATT
20152976 ATTATTTGTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.69, C:0.07, G:0.05, T:0.19
Consensus pattern (22 bp):
AAAAAAATTCAAAAAAAATTCG
Found at i:20153877 original size:21 final size:21
Alignment explanation
Indices: 20153853--20153895 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
20153843 GAGGGAAGAA
* *
20153853 AAAAAGAAATGAGAGAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
20153874 AAAAAGAAATAAAAGAAAAAG
1 AAAAAGAAATAAAAGAAAAAG
20153895 A
1 A
20153896 TATCAAAAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.05
Consensus pattern (21 bp):
AAAAAGAAATAAAAGAAAAAG
Found at i:20153887 original size:15 final size:14
Alignment explanation
Indices: 20153848--20153895 Score: 60
Period size: 15 Copynumber: 3.3 Consensus size: 14
20153838 AAATTGAGGG
20153848 AAGAAAAAAAGAAA
1 AAGAAAAAAAGAAA
* *
20153862 TGAGAGAAAAAGAAA
1 -AAGAAAAAAAGAAA
20153877 AAGAAATAAAAGAAA
1 AAGAAA-AAAAGAAA
20153892 AAGA
1 AAGA
20153896 TATCAAAAGG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
14 4 0.14
15 24 0.86
ACGTcount: A:0.77, C:0.00, G:0.19, T:0.04
Consensus pattern (14 bp):
AAGAAAAAAAGAAA
Found at i:20153946 original size:41 final size:41
Alignment explanation
Indices: 20153900--20154002 Score: 136
Period size: 41 Copynumber: 2.5 Consensus size: 41
20153890 AAAAGATATC
*
20153900 AAAAGGATAACAAAT-AAAGAGATTGAAAATGATGTTATCCA
1 AAAAGGATAACAAATGAAA-AGATTGAAAAGGATGTTATCCA
* * *
20153941 GAAAGGATATCAAATGAAAAGGTTGAAAAGGATGTTATCCA
1 AAAAGGATAACAAATGAAAAGATTGAAAAGGATGTTATCCA
* *
20153982 AAAATGACAACAAATGAAAAG
1 AAAAGGATAACAAATGAAAAG
20154003 GAAACCATAA
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
41 50 0.94
42 3 0.06
ACGTcount: A:0.53, C:0.08, G:0.19, T:0.19
Consensus pattern (41 bp):
AAAAGGATAACAAATGAAAAGATTGAAAAGGATGTTATCCA
Found at i:20164813 original size:16 final size:16
Alignment explanation
Indices: 20164794--20164827 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
20164784 TACTAAAATA
20164794 TTTAGAAACATTTACT
1 TTTAGAAACATTTACT
*
20164810 TTTAGGAACATTTACT
1 TTTAGAAACATTTACT
20164826 TT
1 TT
20164828 GTTTCAGTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.32, C:0.12, G:0.09, T:0.47
Consensus pattern (16 bp):
TTTAGAAACATTTACT
Found at i:20170754 original size:33 final size:33
Alignment explanation
Indices: 20170717--20170781 Score: 112
Period size: 33 Copynumber: 2.0 Consensus size: 33
20170707 GGCCTGAGCC
20170717 CTATGAAGTGACAGTACAGTGTAGACCTTAGCT
1 CTATGAAGTGACAGTACAGTGTAGACCTTAGCT
* *
20170750 CTATGAAGTGACAGTACAGTGTGGGCCTTAGC
1 CTATGAAGTGACAGTACAGTGTAGACCTTAGC
20170782 CCAATACAGT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (33 bp):
CTATGAAGTGACAGTACAGTGTAGACCTTAGCT
Found at i:20170973 original size:27 final size:26
Alignment explanation
Indices: 20170899--20170973 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
20170889 AATACACTAA
* *
20170899 TATCGCAGCAAAGCTACCAGTATCAG
1 TATCGTAGCAAAGCTACCAGTAACAG
* *
20170925 TATCGTAGCAAAGCTGCTAGTAACAG
1 TATCGTAGCAAAGCTACCAGTAACAG
* * *
20170951 TATATGTGGCAAAGCCACCAGTA
1 TAT-CGTAGCAAAGCTACCAGTA
20170974 GGTCCACAAT
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 25 0.64
27 14 0.36
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (26 bp):
TATCGTAGCAAAGCTACCAGTAACAG
Found at i:20171217 original size:27 final size:27
Alignment explanation
Indices: 20171187--20171410 Score: 272
Period size: 27 Copynumber: 8.3 Consensus size: 27
20171177 GGGTATAACA
* *
20171187 GTCATTTTACCCTATAAGGTTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
20171214 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
*
20171241 ATCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
20171268 ATCATTTTACCCTATGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
20171295 GTCATTTTACCCTATAGGGGTATTTCG
1 GTCATTTTACCCTATAGGGGTATTTCG
* * *
20171322 ATCATTTTTTCACC--TGGGGGTATTTCG
1 GTCA-TTTTAC-CCTATAGGGGTATTTCG
** * *
20171349 GTCATTTTACATTATGGGGGTATTTCA
1 GTCATTTTACCCTATAGGGGTATTTCG
**
20171376 GTCATTTTACCCTATAGGGGTATTTTA
1 GTCATTTTACCCTATAGGGGTATTTCG
20171403 GTCATTTT
1 GTCATTTT
20171411 CATCTATTAG
Statistics
Matches: 171, Mismatches: 22, Indels: 8
0.85 0.11 0.04
Matches are distributed among these distances:
26 5 0.03
27 159 0.93
28 5 0.03
29 2 0.01
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTCG
Found at i:20171218 original size:54 final size:53
Alignment explanation
Indices: 20171161--20171410 Score: 283
Period size: 54 Copynumber: 4.6 Consensus size: 53
20171151 GCCATAACAG
** * * *
20171161 TCATTTTATCTCCTA-GGGGTATAACAGTCATTTTACCCTATAAGGTTATTTCGG
1 TCATTTTA-C-CCTAGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
20171215 TCATTTTACCCTATGGGGGTATTTC-GATCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCAG-TCATTTTACCCTATAGGGGTATTTCGA
20171269 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
1 TCATTTTACCCTA-GGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
* * ** *
20171323 TCATTTTTTCACCT-GGGGGTATTTCGGTCATTTTACATTATGGGGGTATTTC-A
1 TCA-TTTTAC-CCTAGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
* *
20171376 GTCATTTTACCCTATAGGGGTATTTTAGTCATTTT
1 -TCATTTTACCCTA-GGGGGTATTTCAGTCATTTT
20171411 CATCTATTAG
Statistics
Matches: 173, Mismatches: 14, Indels: 18
0.84 0.07 0.09
Matches are distributed among these distances:
52 7 0.04
53 8 0.05
54 149 0.86
55 6 0.03
56 3 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (53 bp):
TCATTTTACCCTAGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGA
Found at i:20171299 original size:81 final size:81
Alignment explanation
Indices: 20171188--20171400 Score: 304
Period size: 81 Copynumber: 2.6 Consensus size: 81
20171178 GGTATAACAG
** * * *
20171188 TCATTTTACCCTATAAGGTTATTTCGGTCATTTTACCCTATGGGGGTATTTCGATCA-TTTTAC-
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTTACA
20171251 CCTATAGGGGTATTTCGA
66 CC--TAGGGGTATTTCGA
*
20171269 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTTTCA
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTTACA
* *
20171334 CCTGGGGGTATTTCGG
66 CCTAGGGGTATTTCGA
**
20171350 TCATTTTACATTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTT
1 TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTT
20171401 TAGTCATTTT
Statistics
Matches: 120, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
81 113 0.94
82 5 0.04
83 2 0.02
ACGTcount: A:0.20, C:0.17, G:0.20, T:0.43
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTATTTCAGTCATTTTACCCTATAGGGGTATTTCGATCATTTTTACA
CCTAGGGGTATTTCGA
Found at i:20171417 original size:27 final size:26
Alignment explanation
Indices: 20171159--20171471 Score: 179
Period size: 27 Copynumber: 11.6 Consensus size: 26
20171149 AGGCCATAAC
* * ***
20171159 AGTCATTTTATCTCCTAGGGGTATAAC
1 AGTCATTTTACCT-ATAGGGGTATTTT
* * *
20171186 AGTCATTTTACCCTATAAGGTTATTTC
1 AGTCATTTTA-CCTATAGGGGTATTTT
* *
20171213 GGTCATTTTACCCTATGGGGGTA-TTT
1 AGTCATTTTA-CCTATAGGGGTATTTT
*
20171239 CGATCATTTTACCCTATAGGGGTA-TTT
1 AG-TCATTTTA-CCTATAGGGGTATTTT
* * *
20171266 CGATCATTTTACCCTATGGGGGTATTTC
1 AG-TCATTTTA-CCTATAGGGGTATTTT
20171294 AGTCATTTTACCCTATAGGGGTA-TTT
1 AGTCATTTTA-CCTATAGGGGTATTTT
* * *
20171320 CGATCATTTTTTCACC--TGGGGGTATTTC
1 AG-TCA--TTTT-ACCTATAGGGGTATTTT
* * * *
20171348 GGTCATTTTACATTATGGGGGTATTTC
1 AGTCATTTTAC-CTATAGGGGTATTTT
20171375 AGTCATTTTACCCTATAGGGGTATTTT
1 AGTCATTTTA-CCTATAGGGGTATTTT
* ***
20171402 AGTCATTTTCATCTATTAGGGGTAAAAT
1 AGTCATTTT-ACCTA-TAGGGGTATTTT
*
20171430 AGTTATTTTATCCT-TCAGGGGTATTTT
1 AGTCATTTTA-CCTAT-AGGGGTATTTT
*
20171457 GGTCATTTTACCTAT
1 AGTCATTTTACCTAT
20171472 TTTGGAGTCT
Statistics
Matches: 231, Mismatches: 38, Indels: 34
0.76 0.13 0.11
Matches are distributed among these distances:
24 2 0.01
25 4 0.02
26 10 0.04
27 179 0.77
28 29 0.13
29 6 0.03
30 1 0.00
ACGTcount: A:0.21, C:0.16, G:0.19, T:0.43
Consensus pattern (26 bp):
AGTCATTTTACCTATAGGGGTATTTT
Found at i:20171738 original size:19 final size:19
Alignment explanation
Indices: 20171699--20171758 Score: 54
Period size: 20 Copynumber: 3.2 Consensus size: 19
20171689 ATCCGTGTAG
* *
20171699 GGCCCACA-AG-CCAATTA
1 GGCCCACACAGCCCATTTC
20171716 GGCCCACACAGCCCATTTC
1 GGCCCACACAGCCCATTTC
*
20171735 GGCCCA-ACGTGGCCCATTTC
1 GGCCCACAC--AGCCCATTTC
20171755 GGCC
1 GGCC
20171759 TAAGCCCATG
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
17 8 0.22
18 4 0.11
19 11 0.31
20 13 0.36
ACGTcount: A:0.22, C:0.42, G:0.22, T:0.15
Consensus pattern (19 bp):
GGCCCACACAGCCCATTTC
Found at i:20176948 original size:18 final size:17
Alignment explanation
Indices: 20176925--20176961 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
20176915 GGATGAAAAC
20176925 ATTAAGGGTAAAATTATA
1 ATTAA-GGTAAAATTATA
*
20176943 ATTAAGTTAAAATTATA
1 ATTAAGGTAAAATTATA
20176960 AT
1 AT
20176962 AAAATAAAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.51, C:0.00, G:0.11, T:0.38
Consensus pattern (17 bp):
ATTAAGGTAAAATTATA
Found at i:20181124 original size:20 final size:20
Alignment explanation
Indices: 20181101--20181147 Score: 62
Period size: 18 Copynumber: 2.4 Consensus size: 20
20181091 TAAATTAAAC
20181101 TATTTTTTATTAAAATTTCA
1 TATTTTTTATTAAAATTTCA
*
20181121 TA--TTTTATTGAAATTTCA
1 TATTTTTTATTAAAATTTCA
20181139 TATTCTTTT
1 TATT-TTTT
20181148 GAATGACAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
18 17 0.74
20 2 0.09
21 4 0.17
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (20 bp):
TATTTTTTATTAAAATTTCA
Found at i:20181150 original size:18 final size:18
Alignment explanation
Indices: 20181105--20181142 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
20181095 TTAAACTATT
*
20181105 TTTTATTAAAATTTCATA
1 TTTTATTGAAATTTCATA
20181123 TTTTATTGAAATTTCATA
1 TTTTATTGAAATTTCATA
20181141 TT
1 TT
20181143 CTTTTGAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.34, C:0.05, G:0.03, T:0.58
Consensus pattern (18 bp):
TTTTATTGAAATTTCATA
Found at i:20181607 original size:14 final size:14
Alignment explanation
Indices: 20181585--20181617 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
20181575 TTGTGTTAAA
20181585 CTATA-TGTGAGCT
1 CTATATTGTGAGCT
20181598 CTATATTGTGAGCT
1 CTATATTGTGAGCT
*
20181612 ATATAT
1 CTATAT
20181618 GAATAGTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.27, C:0.12, G:0.18, T:0.42
Consensus pattern (14 bp):
CTATATTGTGAGCT
Found at i:20183295 original size:24 final size:24
Alignment explanation
Indices: 20183263--20183309 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
20183253 GCAAGCCCAT
* *
20183263 TTCATAGCTCGTGTGAGCATTATA
1 TTCATAGCTCATATGAGCATTATA
20183287 TTCATAGCTCATATGAGCATTAT
1 TTCATAGCTCATATGAGCATTAT
20183310 TATCCTGCAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (24 bp):
TTCATAGCTCATATGAGCATTATA
Found at i:20195358 original size:6 final size:6
Alignment explanation
Indices: 20195343--20195381 Score: 60
Period size: 6 Copynumber: 6.3 Consensus size: 6
20195333 GGTTTTCTTG
*
20195343 AAATGA AAATGG AAATGA AAATGA AAATGA AAACTGA AA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAA-TGA AA
20195382 GATGGTGTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 25 0.83
7 5 0.17
ACGTcount: A:0.64, C:0.03, G:0.18, T:0.15
Consensus pattern (6 bp):
AAATGA
Found at i:20196003 original size:6 final size:6
Alignment explanation
Indices: 20195992--20196034 Score: 68
Period size: 6 Copynumber: 7.0 Consensus size: 6
20195982 GGTTTTCTTG
*
20195992 AAATGA AAATGA AAATGA AAATGA AAATGA GAATGA GAAATGA
1 AAATGA AAATGA AAATGA AAATGA AAATGA AAATGA -AAATGA
20196035 TTCATTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
6 29 0.85
7 5 0.15
ACGTcount: A:0.63, C:0.00, G:0.21, T:0.16
Consensus pattern (6 bp):
AAATGA
Found at i:20201475 original size:36 final size:36
Alignment explanation
Indices: 20201428--20201534 Score: 135
Period size: 36 Copynumber: 3.0 Consensus size: 36
20201418 GACAATCCCA
* *
20201428 CCAAAACACACCAGATGCTCATAAGAGCTAGTCCAT
1 CCAAAACACACCAAATGCTCATAAGAGCTAATCCAT
*
20201464 CCAAAACACACCAAATGCTCATATGAGCTAATCCAT
1 CCAAAACACACCAAATGCTCATAAGAGCTAATCCAT
* * **
20201500 CAAAAACACA-CTAATGGCTCGGAAGAGCTAATCCA
1 CCAAAACACACCAAAT-GCTCATAAGAGCTAATCCA
20201535 ATCGAAACAC
Statistics
Matches: 62, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 4 0.06
36 58 0.94
ACGTcount: A:0.41, C:0.29, G:0.13, T:0.17
Consensus pattern (36 bp):
CCAAAACACACCAAATGCTCATAAGAGCTAATCCAT
Found at i:20211595 original size:20 final size:21
Alignment explanation
Indices: 20211555--20211595 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
20211545 TATTAAATTC
*
20211555 AATATAATATTTATCTTGATA
1 AATATAATATTAATCTTGATA
*
20211576 AATATTATATTAAT-TTGATA
1 AATATAATATTAATCTTGATA
20211596 TTAAAGTGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (21 bp):
AATATAATATTAATCTTGATA
Found at i:20216184 original size:27 final size:27
Alignment explanation
Indices: 20216129--20216185 Score: 96
Period size: 27 Copynumber: 2.1 Consensus size: 27
20216119 GTAATTCTTG
**
20216129 ATAGTTTGAAAGCTGCTTCAGATTGAC
1 ATAGTTTGAAAGCTGCTTCAGATCAAC
20216156 ATAGTTTGAAAGCTGCTTCAGATCAAC
1 ATAGTTTGAAAGCTGCTTCAGATCAAC
20216183 ATA
1 ATA
20216186 AATCGTATGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32
Consensus pattern (27 bp):
ATAGTTTGAAAGCTGCTTCAGATCAAC
Found at i:20218863 original size:20 final size:20
Alignment explanation
Indices: 20218828--20218876 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
20218818 ATCATGGTCT
*
20218828 TTGCTT-CTTCTTTACTTAC
1 TTGCTTACTTGTTTACTTAC
20218847 TCT-CTTACTTGTTTACTTAC
1 T-TGCTTACTTGTTTACTTAC
20218867 TTGCTTACTT
1 TTGCTTACTT
20218877 TAATAACTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 21 0.81
ACGTcount: A:0.12, C:0.24, G:0.06, T:0.57
Consensus pattern (20 bp):
TTGCTTACTTGTTTACTTAC
Found at i:20219196 original size:50 final size:50
Alignment explanation
Indices: 20219128--20219320 Score: 188
Period size: 50 Copynumber: 3.7 Consensus size: 50
20219118 TTTCCTGTAC
* * *
20219128 TGCCAATGCCATATCCCAGATATGGTCTTACATGGGAGTTCTAATATTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTAATATTGG
* ** * * * *
20219178 TGCCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTAATATTGG
** * * **
20219228 TGCCAACACCATGTCCCAGAAATGGTCTTACATGGGACCTCTCATAACCTCAATAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA-CT-TC-TAA--T-ATTGG
20219284 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGA
20219321 TCTCATTCCT
Statistics
Matches: 111, Mismatches: 26, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
50 71 0.64
51 1 0.01
52 2 0.02
53 2 0.02
55 1 0.01
56 34 0.31
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACTTCTAATATTGG
Found at i:20235945 original size:48 final size:48
Alignment explanation
Indices: 20235874--20235970 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
20235864 CAAAAATGTT
20235874 AGTCTAGCTTTCAACTCAATTAAAATCAAACCATCATCAGTCAACGTC
1 AGTCTAGCTTTCAACTCAATTAAAATCAAACCATCATCAGTCAACGTC
20235922 AGTCTAGCTTTCAACTCAATTAAAATCAAACCATCATCAGTCAACGTC
1 AGTCTAGCTTTCAACTCAATTAAAATCAAACCATCATCAGTCAACGTC
20235970 A
1 A
20235971 ACCGCGTGTT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.38, C:0.27, G:0.08, T:0.27
Consensus pattern (48 bp):
AGTCTAGCTTTCAACTCAATTAAAATCAAACCATCATCAGTCAACGTC
Found at i:20247173 original size:20 final size:20
Alignment explanation
Indices: 20247118--20247176 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
20247108 GATGAATAAT
*
20247118 AGGGGCACCAAAGTGCAGAC
1 AGGGGCACCAAAGTGCAAAC
**
20247138 AGGTTCA-CAAATGTGCAAAC
1 AGGGGCACCAAA-GTGCAAAC
*
20247158 AGGGGCACCGAAGTGCAAA
1 AGGGGCACCAAAGTGCAAA
20247177 TCTTGTACAA
Statistics
Matches: 31, Mismatches: 6, Indels: 4
0.76 0.15 0.10
Matches are distributed among these distances:
19 4 0.13
20 24 0.77
21 3 0.10
ACGTcount: A:0.37, C:0.22, G:0.31, T:0.10
Consensus pattern (20 bp):
AGGGGCACCAAAGTGCAAAC
Found at i:20251255 original size:29 final size:29
Alignment explanation
Indices: 20251213--20251270 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
20251203 GGAAAGATGA
20251213 TAATTTTTTCATCATCTTTCCTCCGCTTT
1 TAATTTTTTCATCATCTTTCCTCCGCTTT
20251242 TAATTTTTTCATCATCTTTCCTCCGCTTT
1 TAATTTTTTCATCATCTTTCCTCCGCTTT
20251271 ATATTAATCA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.14, C:0.28, G:0.03, T:0.55
Consensus pattern (29 bp):
TAATTTTTTCATCATCTTTCCTCCGCTTT
Found at i:20253355 original size:50 final size:50
Alignment explanation
Indices: 20253287--20253724 Score: 480
Period size: 50 Copynumber: 8.6 Consensus size: 50
20253277 TTTCCTGTAC
* ** ** *
20253287 TGCCAATGCCATATCCCAGGTATGGTCTTACATGGGAGTTCTCATATCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ** *
20253337 TGCCCATGCCATTTCCCAGACATGGTCTTACGGGGGACCTCTAATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * *
20253387 TGCCAACGCCATGTCCTAGACATGGTCATACATGGGTCCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * * *
20253437 TGTCAACGCCATATCTCAAACATGGTCTTACATAGGACCTCTCATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
20253487 TGCCAACGCCATGTCCTAGACATGGTCTTACATGGGACCTCTCATCTTGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
20253537 TGCCAATACCATGTCCCAGACATGGTCTTATATGGGACCTCTTATCTCGG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * **
20253587 TGCCAATGCCATGTTCCAGACATGGTCTTACGTGAGACCTCTCTTCTTAG
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * * * *
20253637 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACATCTCATAATTTTAGTAA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAC--CTC-TCA-TCTCG--G
20253693 TGCCAATGCCATGTCCCAGACATGGTCTTACA
1 TGCCAATGCCATGTCCCAGACATGGTCTTACA
20253725 CTGGCTTACA
Statistics
Matches: 322, Mismatches: 60, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
50 285 0.89
52 3 0.01
53 1 0.00
54 2 0.01
56 31 0.10
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.28
Consensus pattern (50 bp):
TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:20256022 original size:23 final size:23
Alignment explanation
Indices: 20255989--20256032 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
20255979 CAGTGAAACA
*
20255989 GGGGAGCCTTTAACTAATAAATG
1 GGGGAGACTTTAACTAATAAATG
20256012 GGGGAGACTTTAACTAATAAA
1 GGGGAGACTTTAACTAATAAA
20256033 CTGTACTAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.39, C:0.11, G:0.25, T:0.25
Consensus pattern (23 bp):
GGGGAGACTTTAACTAATAAATG
Found at i:20261507 original size:50 final size:50
Alignment explanation
Indices: 20261432--20261574 Score: 243
Period size: 50 Copynumber: 2.9 Consensus size: 50
20261422 CATTTGGGTA
20261432 AAGAGGTCCCATGTAAGACCATGTCTGGGGCATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGGCATGGCGTTGGCACCGAGAT
* *
20261482 AAGAGGTCTCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCGAGAT
1 AAGAGGTCCCATGTAAGACCATGTCTGGGGCATGGCGTTGGCACCGAGAT
*
20261532 AAGAGGTCCCATGTAAGACCATGTCTGGGAG-ATGGTGTTGGCA
1 AAGAGGTCCCATGTAAGACCATGTCTGGG-GCATGGCGTTGGCA
20261575 TCNNNNNNNN
Statistics
Matches: 87, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
50 87 1.00
ACGTcount: A:0.25, C:0.20, G:0.34, T:0.22
Consensus pattern (50 bp):
AAGAGGTCCCATGTAAGACCATGTCTGGGGCATGGCGTTGGCACCGAGAT
Found at i:20264199 original size:50 final size:50
Alignment explanation
Indices: 20264106--20264363 Score: 327
Period size: 50 Copynumber: 5.2 Consensus size: 50
20264096 TTTCCTATAC
* * ** ** ** *
20264106 TGCCAATGCCATATCCCAGGTATGGTCTTACATCAGAGTTCTCATATCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * ***
20264156 TGCCCATGCCATGTCCCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
20264206 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCCCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* * *
20264256 TGTCAGCGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCAG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
* **
20264306 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCATCTCGG
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
20264356 TGCCAACG
1 TGCCAACG
20264364 ACAGGTATTA
Statistics
Matches: 180, Mismatches: 28, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 180 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.25
Consensus pattern (50 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:20264249 original size:100 final size:98
Alignment explanation
Indices: 20264106--20264486 Score: 379
Period size: 100 Copynumber: 3.9 Consensus size: 98
20264096 TTTCCTATAC
* * ** * ** * *
20264106 TGCCAATGCCATATCCCAGGTATGGTCTTACATCAGAGTTCTCATATCGGTGCCCATGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTG-CCACGCCATGTC
**
20264171 CCAGACATGGTCTTATGGGGGACCTCTCATCTCGG
65 CCAGACATGGTCTTA-AAGGGACCTCTCATCTCGG
* * *
20264206 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCCCGGTGTCAGCGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCA-CGCCATGTC
* *
20264271 CCAGACATGGTCTTACATGGGACCTCTCATCTCAG
65 CCAGACATGGTCTTA-AAGGGACCTCTCATCTCGG
* *
20264306 TGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCATCTCGGTGCCA----A-----
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCACGCCATGTCC
* * * *
20264362 C-GACA-GGTATTACATGGACCTCTCATCTTGG
66 CAGACATGGTCTTAAAGGGACCTCTCATCTCGG
* * * *
20264393 TGCCAATGCCATGTTCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTC
1 TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCC-ACGCCATGTC
* *
20264458 CCAGACATGGTCTTACATGAGACCTCTCA
65 CCAGACATGGTCTTA-AAGGGACCTCTCA
20264487 CAATTTCAAT
Statistics
Matches: 229, Mismatches: 38, Indels: 28
0.78 0.13 0.09
Matches are distributed among these distances:
87 62 0.27
88 7 0.03
89 4 0.02
90 1 0.00
92 1 0.00
95 1 0.00
97 1 0.00
98 4 0.02
99 8 0.03
100 140 0.61
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (98 bp):
TGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCATCTCGGTGCCACGCCATGTCC
CAGACATGGTCTTAAAGGGACCTCTCATCTCGG
Found at i:20264396 original size:87 final size:89
Alignment explanation
Indices: 20264274--20264455 Score: 260
Period size: 87 Copynumber: 2.1 Consensus size: 89
20264264 CCATGTCCCA
*
20264274 GACATGGTCTTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACAT
1 GACATGGTATTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACAT
20264339 GAAACCTCTCATCTCGGTGCCAAC
66 GAAACCTCTCATCTCGGTGCCAAC
** * * *
20264363 GACA-GGTATTACAT-GGACCTCTCATCTTGGTGCCAATGCCATGTTCCAGACATGGTCTTACAT
1 GACATGGTATTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACAT
** *
20264426 GGGACCTCTCATCTTGGTGCCAAC
66 GAAACCTCTCATCTCGGTGCCAAC
*
20264450 GCCATG
1 GACATG
20264456 TCCCAGACAT
Statistics
Matches: 82, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
87 68 0.83
88 10 0.12
89 4 0.05
ACGTcount: A:0.23, C:0.30, G:0.20, T:0.26
Consensus pattern (89 bp):
GACATGGTATTACATGGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACAT
GAAACCTCTCATCTCGGTGCCAAC
Found at i:20264445 original size:50 final size:50
Alignment explanation
Indices: 20264363--20264486 Score: 198
Period size: 50 Copynumber: 2.5 Consensus size: 50
20264353 CGGTGCCAAC
* * *
20264363 GACA-GGTATTACAT-GGACCTCTCATCTTGGTGCCAATGCCATGTTCCA
1 GACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCA
20264411 GACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCA
1 GACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCA
*
20264461 GACATGGTCTTACATGAGACCTCTCA
1 GACATGGTCTTACATGGGACCTCTCA
20264487 CAATTTCAAT
Statistics
Matches: 70, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
48 4 0.06
49 9 0.13
50 57 0.81
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (50 bp):
GACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCA
Found at i:20264486 original size:137 final size:139
Alignment explanation
Indices: 20264224--20264486 Score: 413
Period size: 137 Copynumber: 1.9 Consensus size: 139
20264214 CCATGTCCCA
* * *
20264224 GACATGGTCTTACATGGGACCTCTCATCCCGGTGTCAGCGCCATGTCCCAGACATGGTCTTACAT
1 GACATGGTATTACATGGGACCTCTCATCCCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAT
20264289 GGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCATCTC
66 GGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCATCTC
20264354 GGTGCCAAC
131 GGTGCCAAC
** * *
20264363 GACA-GGTATTACAT-GGACCTCTCATCTTGGTGCCAATGCCATGTTCCAGACATGGTCTTACAT
1 GACATGGTATTACATGGGACCTCTCATCCCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAT
** * *
20264426 GGGACCTCTCATCTTGGTGCCAACGCCATGTCCCAGACATGGTCTTACATGAGACCTCTCA
66 GGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCA
20264487 CAATTTCAAT
Statistics
Matches: 113, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
137 100 0.88
138 9 0.08
139 4 0.04
ACGTcount: A:0.22, C:0.31, G:0.21, T:0.26
Consensus pattern (139 bp):
GACATGGTATTACATGGGACCTCTCATCCCGGTGCCAACGCCATGTCCCAGACATGGTCTTACAT
GGGACCTCTCATCTCAGTGCCAACGCCATGTCCCAAACATGGTCTTACATGAAACCTCTCATCTC
GGTGCCAAC
Found at i:20264513 original size:56 final size:50
Alignment explanation
Indices: 20264363--20264530 Score: 151
Period size: 50 Copynumber: 3.3 Consensus size: 50
20264353 CGGTGCCAAC
* * ** *
20264363 GACA-GGTATTACATG-GACCTCTCATCTTGGTGCCAATGCCATGTTCCA
1 GACATGGTCTTACATGAGACCTCTCATCATAATGCCAATGCCATGTCCCA
* * ** *
20264411 GACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAACGCCATGTCCCA
1 GACATGGTCTTACATGAGACCTCTCATCATAATGCCAATGCCATGTCCCA
*
20264461 GACATGGTCTTACATGAGACCTCTCACAATTTCAATAATGCCAATGTCATGTCCCA
1 GACATGGTCTTACATGAGACCTCT--C-A--TC-ATAATGCCAATGCCATGTCCCA
* *
20264517 AACATGGTGTTACA
1 GACATGGTCTTACA
20264531 CTGGCTCACA
Statistics
Matches: 101, Mismatches: 11, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
48 4 0.04
49 10 0.10
50 54 0.53
52 1 0.01
53 1 0.01
55 2 0.02
56 29 0.29
ACGTcount: A:0.26, C:0.27, G:0.19, T:0.28
Consensus pattern (50 bp):
GACATGGTCTTACATGAGACCTCTCATCATAATGCCAATGCCATGTCCCA
Found at i:20275272 original size:53 final size:53
Alignment explanation
Indices: 20275187--20275288 Score: 134
Period size: 53 Copynumber: 1.9 Consensus size: 53
20275177 ATGGCACTAC
* *
20275187 AGAAGACGATATCATGTAATACCATAATTGGTGGGTTATGACATCATATTTGA
1 AGAAGACGATATCATGTAAGACCATAACTGGTGGGTTATGACATCATATTTGA
* * **
20275240 AGAAGATC-ATATCGTGTAAGACCGTAACTGGTGGGTTATGGTATCATAT
1 AGAAGA-CGATATCATGTAAGACCATAACTGGTGGGTTATGACATCATAT
20275289 GGAAAAAATT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
53 41 0.98
54 1 0.02
ACGTcount: A:0.33, C:0.12, G:0.24, T:0.31
Consensus pattern (53 bp):
AGAAGACGATATCATGTAAGACCATAACTGGTGGGTTATGACATCATATTTGA
Found at i:20275468 original size:28 final size:28
Alignment explanation
Indices: 20275416--20275537 Score: 124
Period size: 29 Copynumber: 4.3 Consensus size: 28
20275406 AGAAGAAAAT
20275416 CCTTTGTGGCAAAACTTTGGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAG
* *
20275445 CCTTTGTGGCAAACCTATT-AAAGG-ATAA
1 CCTTTGTGGCAAAACT-TTGAAAGGCA-AG
*
20275473 CCTTTGTTGCAAAACTTTAGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAG
** * *
20275502 CCTTTGTGGTGAAACTCTGAAAGG-ACG
1 CCTTTGTGGCAAAACTTTGAAAGGCAAG
20275529 CCTTTGTGG
1 CCTTTGTGG
20275538 AGAGACTCTG
Statistics
Matches: 78, Mismatches: 10, Indels: 12
0.78 0.10 0.12
Matches are distributed among these distances:
27 14 0.18
28 26 0.33
29 35 0.45
30 3 0.04
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (28 bp):
CCTTTGTGGCAAAACTTTGAAAGGCAAG
Found at i:20275497 original size:29 final size:28
Alignment explanation
Indices: 20275416--20275566 Score: 112
Period size: 28 Copynumber: 5.4 Consensus size: 28
20275406 AGAAGAAAAT
*
20275416 CCTTTGTGGCAAAACTTTGGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAA
*
20275445 CCTTTGTGGCAAACCTATT-AAAGG-ATAA
1 CCTTTGTGGCAAAACT-TTGAAAGGCA-AA
* *
20275473 CCTTTGTTGCAAAACTTTAGAAAGGCAAG
1 CCTTTGTGGCAAAACTTT-GAAAGGCAAA
** * **
20275502 CCTTTGTGGTGAAACTCTGAAAGG-ACG
1 CCTTTGTGGCAAAACTTTGAAAGGCAAA
* * *
20275529 CCTTTGTGG-AGAGACTCTGAAAGGAAAA
1 CCTTTGTGGCA-AAACTTTGAAAGGCAAA
*
20275557 TCTTTGTGGC
1 CCTTTGTGGC
20275567 CACTACTTAA
Statistics
Matches: 99, Mismatches: 15, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
27 26 0.26
28 35 0.35
29 35 0.35
30 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27
Consensus pattern (28 bp):
CCTTTGTGGCAAAACTTTGAAAGGCAAA
Found at i:20275537 original size:27 final size:27
Alignment explanation
Indices: 20275416--20275554 Score: 95
Period size: 29 Copynumber: 5.0 Consensus size: 27
20275406 AGAAGAAAAT
*
20275416 CCTTTGTGGCA-AAACTTTGGAAAGGCAAG
1 CCTTTGTGG-AGAAACTCT-GAAAGG-AAG
* * * *
20275445 CCTTTGTGGCA-AACCTATTAAAGGATAA
1 CCTTTGTGG-AGAAACTCTGAAAGGA-AG
* *
20275473 CCTTTGTTGCA-AAACTTTAGAAAGGCAAG
1 CCTTTG-TGGAGAAACTCT-GAAAGG-AAG
* *
20275502 CCTTTGTGGTGAAACTCTGAAAGGACG
1 CCTTTGTGGAGAAACTCTGAAAGGAAG
*
20275529 CCTTTGTGGAGAGACTCTGAAAGGAA
1 CCTTTGTGGAGAAACTCTGAAAGGAA
20275555 AATCTTTGTG
Statistics
Matches: 89, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
27 26 0.29
28 26 0.29
29 36 0.40
30 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.25, T:0.26
Consensus pattern (27 bp):
CCTTTGTGGAGAAACTCTGAAAGGAAG
Found at i:20284181 original size:48 final size:48
Alignment explanation
Indices: 20284113--20284309 Score: 234
Period size: 48 Copynumber: 4.1 Consensus size: 48
20284103 AATAGATTTC
* * * *
20284113 TCGGTGGCCTGCACACAGTCCGTACCACCTTTGTGTAATAACAGATTC
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
* * * *
20284161 TCGGTGGCCTGCACATAGTCCGTGTCACCCTTGTATCTTAACA-AGTTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGA-TTA
* * * * * * *
20284209 TTGGTGGCCTACACATACTCTGTGCCACCCTTGTGTCACAACAGAATA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
*
20284257 TCGGTGGCTTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
1 TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
20284305 TCGGT
1 TCGGT
20284310 ACGGATAGTA
Statistics
Matches: 122, Mismatches: 25, Indels: 4
0.81 0.17 0.03
Matches are distributed among these distances:
47 1 0.01
48 120 0.98
49 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.21, T:0.28
Consensus pattern (48 bp):
TCGGTGGCCTGCACACAGTCCGTGCCACCCTTGTGTCATAACAGATTA
Found at i:20293371 original size:14 final size:14
Alignment explanation
Indices: 20293352--20293379 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
20293342 CCAATTTATT
20293352 AATGAATTATTAAA
1 AATGAATTATTAAA
20293366 AATGAATTATTAAA
1 AATGAATTATTAAA
20293380 TATAACTTTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
AATGAATTATTAAA
Found at i:20298179 original size:169 final size:170
Alignment explanation
Indices: 20297900--20298235 Score: 638
Period size: 169 Copynumber: 2.0 Consensus size: 170
20297890 ACCATAAAAC
20297900 TTCAAGAACAACTCAAACTCATCAATGGAATAATCTATAACATTTAACAGTTTTACAAATTAGTC
1 TTCAAGAACAACTCAAACTCATCAATGGAATAATCTATAACATTTAACAGTTTTACAAATTAGTC
20297965 CCCAGGTTAGCTAAATCAAGATAATACGAGCTCAAAAACATAAAAATTACTAAAA-CGAGATCAA
66 CCCAGGTTAGCTAAATCAAGATAATACGAGCTCAAAAACATAAAAATTACTAAAATCGAGATCAA
20298029 GGATCACTTACATACCCCAACCCTAGCTTGACCAAAATTT
131 GGATCACTTACATACCCCAACCCTAGCTTGACCAAAATTT
20298069 TTCAAGAACAACTCAAACTCATCAATGGAATAATCTATAACATTTAACAGTTTTACAAATTAGTC
1 TTCAAGAACAACTCAAACTCATCAATGGAATAATCTATAACATTTAACAGTTTTACAAATTAGTC
* * *
20298134 CCCAGGTTAGCTAAATCAAGATAATAGGAGCTCAAAAACATAAAAATTACTAAAATCGGGATCGA
66 CCCAGGTTAGCTAAATCAAGATAATACGAGCTCAAAAACATAAAAATTACTAAAATCGAGATCAA
20298199 GGATCACTTACATACCCCAACCCTAGCTTGACCAAAA
131 GGATCACTTACATACCCCAACCCTAGCTTGACCAAAA
20298236 CTTTCTTCTC
Statistics
Matches: 163, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
169 119 0.73
170 44 0.27
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (170 bp):
TTCAAGAACAACTCAAACTCATCAATGGAATAATCTATAACATTTAACAGTTTTACAAATTAGTC
CCCAGGTTAGCTAAATCAAGATAATACGAGCTCAAAAACATAAAAATTACTAAAATCGAGATCAA
GGATCACTTACATACCCCAACCCTAGCTTGACCAAAATTT
Found at i:20299905 original size:38 final size:39
Alignment explanation
Indices: 20299854--20299930 Score: 138
Period size: 38 Copynumber: 2.0 Consensus size: 39
20299844 GTGAGCCTGA
20299854 CTACGTGGGCCTTTGATTGGG-CAAAACTCAATTCTCTT
1 CTACGTGGGCCTTTGATTGGGCCAAAACTCAATTCTCTT
*
20299892 CTACGTGGGCCTTTGATTGGGCCAAGACTCAATTCTCTT
1 CTACGTGGGCCTTTGATTGGGCCAAAACTCAATTCTCTT
20299931 TCTTTATTGG
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
38 21 0.57
39 16 0.43
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.34
Consensus pattern (39 bp):
CTACGTGGGCCTTTGATTGGGCCAAAACTCAATTCTCTT
Found at i:20308606 original size:12 final size:12
Alignment explanation
Indices: 20308589--20308613 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20308579 TCTATATCAA
20308589 GCCTAGCACACG
1 GCCTAGCACACG
20308601 GCCTAGCACACG
1 GCCTAGCACACG
20308613 G
1 G
20308614 ACGTGTGAGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.40, G:0.28, T:0.08
Consensus pattern (12 bp):
GCCTAGCACACG
Found at i:20315218 original size:47 final size:51
Alignment explanation
Indices: 20315161--20315261 Score: 120
Period size: 51 Copynumber: 2.1 Consensus size: 51
20315151 CAAAATCTTG
* *
20315161 TTTATATAA-TTA-TTT-TTTAGATTTGATG-TTTTAAATAAATATAAATA
1 TTTATATAATTTATTTTGTTTAGATCTGATGTTTTTAAACAAATATAAATA
* * * *
20315208 TTTATTTAATTTATTTTGTTTAGATCTGGTGTTTTTACACAAATATAGATA
1 TTTATATAATTTATTTTGTTTAGATCTGATGTTTTTAAACAAATATAAATA
20315259 TTT
1 TTT
20315262 GGTTATATTA
Statistics
Matches: 44, Mismatches: 6, Indels: 4
0.81 0.11 0.07
Matches are distributed among these distances:
47 8 0.18
48 3 0.07
49 3 0.07
50 11 0.25
51 19 0.43
ACGTcount: A:0.34, C:0.03, G:0.09, T:0.54
Consensus pattern (51 bp):
TTTATATAATTTATTTTGTTTAGATCTGATGTTTTTAAACAAATATAAATA
Found at i:20315276 original size:50 final size:48
Alignment explanation
Indices: 20315167--20315277 Score: 116
Period size: 51 Copynumber: 2.2 Consensus size: 48
20315157 CTTGTTTATA
* * *
20315167 TAATTATTT-TTTAGATTTGATGTTTTAAATAAATATAAATATTTATT
1 TAATTATTTGTTTAGATCTGATGTTTTAAACAAATATAAATATTTAGT
* * * *
20315214 TAATTTATTTTGTTTAGATCTGGTGTTTTTACACAAATATAGATATTTGGT
1 TAA-TTA-TTTGTTTAGATCTGATG-TTTTAAACAAATATAAATATTTAGT
20315265 TATATTATTTGTT
1 TA-ATTATTTGTT
20315278 CAAGATATTA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
47 3 0.06
48 3 0.06
49 3 0.06
50 17 0.33
51 25 0.48
52 1 0.02
ACGTcount: A:0.32, C:0.03, G:0.11, T:0.55
Consensus pattern (48 bp):
TAATTATTTGTTTAGATCTGATGTTTTAAACAAATATAAATATTTAGT
Found at i:20315580 original size:82 final size:81
Alignment explanation
Indices: 20315476--20315711 Score: 280
Period size: 82 Copynumber: 2.9 Consensus size: 81
20315466 TTATTGTCGT
* * *
20315476 TCAATAGACTTTATTCCT-TTTTTATTTTGTTTCCAAACAAGAATTAATTGAATAATTCTATTTC
1 TCAACAGATTTTATT-CTATTTTTATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTTC
*
20315540 AGAATTTATTCTC-ACAGC
65 AG-ATTTATTCCCGACA-C
* *
20315558 TCAACAGATTTTATTCTATTTTTATTTTGTTTCCAAACAATAATTAAATAAATAATTCTATTTCT
1 TCAACAGATTTTATTCTATTTTTATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTTC-
* *
20315623 AGATTTATTCCCGCCAT
65 AGATTTATTCCCGACAC
* * * * *
20315640 TTAACAGATTTTATT-TGATTTTGATTTTGTTTCCAAACAAGATTTAATTAAATAATTTTGTTTC
1 TCAACAGATTTTATTCT-ATTTTTATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTTC
20315704 AGGATTTA
65 A-GATTTA
20315712 ATCCTGTCGG
Statistics
Matches: 134, Mismatches: 15, Indels: 10
0.84 0.09 0.06
Matches are distributed among these distances:
81 4 0.03
82 126 0.94
83 4 0.03
ACGTcount: A:0.32, C:0.13, G:0.08, T:0.47
Consensus pattern (81 bp):
TCAACAGATTTTATTCTATTTTTATTTTGTTTCCAAACAAGAATTAATTAAATAATTCTATTTCA
GATTTATTCCCGACAC
Found at i:20315834 original size:12 final size:13
Alignment explanation
Indices: 20315817--20315847 Score: 55
Period size: 12 Copynumber: 2.5 Consensus size: 13
20315807 TTTTTTATTT
20315817 ATTGTGGCTTT-A
1 ATTGTGGCTTTAA
20315829 ATTGTGGCTTTAA
1 ATTGTGGCTTTAA
20315842 ATTGTG
1 ATTGTG
20315848 AAAGCTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.19, C:0.06, G:0.26, T:0.48
Consensus pattern (13 bp):
ATTGTGGCTTTAA
Found at i:20315854 original size:28 final size:29
Alignment explanation
Indices: 20315823--20315877 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
20315813 ATTTATTGTG
* * *
20315823 GCTTTAATTGTGGCTTTAAA-TTGTGAAA
1 GCTTAAATTGTAGCTTCAAACTTGTGAAA
20315851 GCTTAAATTGTAGCTTCAAACTTGTGA
1 GCTTAAATTGTAGCTTCAAACTTGTGA
20315878 CATCAAAGAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 17 0.74
29 6 0.26
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (29 bp):
GCTTAAATTGTAGCTTCAAACTTGTGAAA
Found at i:20320149 original size:40 final size:40
Alignment explanation
Indices: 20320065--20320208 Score: 105
Period size: 40 Copynumber: 3.6 Consensus size: 40
20320055 ATTTGGATAA
***
20320065 AAAACGCTGCTAAAAATCAAGCAATAGCAGCGTTTTTTTT
1 AAAACGCTGCTAAAAATCAAGCAATAGCAGCGTTTTTCGG
* * * *
20320105 AAAACGCTGCTAAAGATCCAA-TATTAGCGGCGTTTTTCGG
1 AAAACGCTGCTAAAAAT-CAAGCAATAGCAGCGTTTTTCGG
* * * **
20320145 AAAACGCCG-TAAAAAAT-GAGCATTAGCAGCGTTTTTCAA
1 AAAACGCTGCT-AAAAATCAAGCAATAGCAGCGTTTTTCGG
* *
20320184 AAAAGCGCCGCAAAAAATCTAAGCA
1 AAAA-CGCTGCTAAAAATC-AAGCA
20320209 CAACGATGTC
Statistics
Matches: 81, Mismatches: 16, Indels: 12
0.74 0.15 0.11
Matches are distributed among these distances:
38 1 0.01
39 20 0.25
40 53 0.65
41 3 0.04
42 4 0.05
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24
Consensus pattern (40 bp):
AAAACGCTGCTAAAAATCAAGCAATAGCAGCGTTTTTCGG
Found at i:20320309 original size:41 final size:40
Alignment explanation
Indices: 20320238--20320594 Score: 313
Period size: 41 Copynumber: 8.5 Consensus size: 40
20320228 GTTTTTGGGC
* * * *
20320238 CTTTAGCGGCGTTTTTTAAAAAACGCCGCTAATGTTCGAGG
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCG-GG
* *
20320279 CTTTAGCGGCGTTTTTGAAGAAGCGTCGCTAATCCTCGGGG
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC-GGG
* *
20320320 CTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTCTGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTC-GGG
* *
20320361 CTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTCTAGGCTTGCTCTGGG
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCT-A------A----TGCTC-GGG
*
20320413 CTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCTGGT
1 CTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGCTC-GGG
* **
20320454 CTTTAGCGGCGTTTTTGGAA-AAACGCCGCTAATAATCGAGG
1 CTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGCTCG-GG
* ***
20320495 CTTTAGCGGCTTTTTTGAAGAAGCGCCGCTAATGCTCTAT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGG
* * * * *
20320535 TTTTAGCGGCTTTTTTTAAGAAGCGCCGCTAATGCTTTGGT
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGC-TCGGG
20320576 CTTTAGCGGCGTTTTTGAA
1 CTTTAGCGGCGTTTTTGAA
20320595 AAAAGCACCG
Statistics
Matches: 263, Mismatches: 37, Indels: 32
0.79 0.11 0.10
Matches are distributed among these distances:
40 37 0.14
41 186 0.71
42 2 0.01
45 1 0.00
48 1 0.00
51 1 0.00
52 33 0.13
53 2 0.01
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCGGG
Found at i:20320376 original size:82 final size:82
Alignment explanation
Indices: 20320238--20320594 Score: 362
Period size: 82 Copynumber: 4.2 Consensus size: 82
20320228 GTTTTTGGGC
* * * * *
20320238 CTTTAGCGGCGTTTTTTAAAAAACGCCGCTAATGTTC-GAGGCTTTAGCGGCGTTTTTGAAGAAG
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTG-GTCTTTAGCGGCGTTTTTGAAGAAG
*
20320302 CGTCGCTAATCCTCGGGG
65 CGCCGCTAATCCTCGGGG
* * *
20320320 CTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTTAAGAAGC
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGAAGAAGC
20320385 GCCGCTAATGCTCTAGGCTTGCTCTGGG
66 GCCGCTAAT-C-CT---C--G----GGG
20320413 CTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGGAA-AA
1 CTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTT-GAAGAA
* ** *
20320476 ACGCCGCTAATAATCGAGG
64 GCGCCGCTAATCCTCGGGG
* * * * *
20320495 CTTTAGCGGCTTTTTTGAAGAAGCGCCGCTAATGCTCT-ATTTTTAGCGGCTTTTTTTAAGAAGC
1 CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGAAGAAGC
* ** *
20320559 GCCGCTAATGCTTTGGT
66 GCCGCTAATCCTCGGGG
20320576 CTTTAGCGGCGTTTTTGAA
1 CTTTAGCGGCGTTTTTGAA
20320595 AAAAGCACCG
Statistics
Matches: 230, Mismatches: 29, Indels: 33
0.79 0.10 0.11
Matches are distributed among these distances:
80 2 0.01
81 50 0.22
82 98 0.43
83 2 0.01
84 2 0.01
86 1 0.00
87 1 0.00
88 1 0.00
89 1 0.00
91 1 0.00
93 66 0.29
94 5 0.02
ACGTcount: A:0.20, C:0.21, G:0.27, T:0.33
Consensus pattern (82 bp):
CTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGAAGAAGC
GCCGCTAATCCTCGGGG
Found at i:20320437 original size:52 final size:52
Alignment explanation
Indices: 20320352--20320450 Score: 155
Period size: 52 Copynumber: 1.9 Consensus size: 52
20320342 GCGCCGCTAA
* *
20320352 TGCTCTGGTCTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTCTAGGCT
1 TGCTCTGGGCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCTAGGCT
*
20320404 TGCTCTGGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCT
1 TGCTCTGGGCTTTAGCGGCATTTTT-GAAGAAGCGCCGCTAATGCTCT
20320451 GGTCTTTAGC
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 41 0.95
53 2 0.05
ACGTcount: A:0.16, C:0.23, G:0.27, T:0.33
Consensus pattern (52 bp):
TGCTCTGGGCTTTAGCGGCATTTTTGAAGAAGCGCCGCTAATGCTCTAGGCT
Found at i:20320481 original size:93 final size:93
Alignment explanation
Indices: 20320317--20320486 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
20320307 CTAATCCTCG
*
20320317 GGGCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTTAAGA
1 GGGCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTGAAGA
*
20320382 AGCGCCGCTAATGCTCTAGGCTTGCTCT
66 AACGCCGCTAATGCTCTAGGCTTGCTCT
* *
20320410 GGGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGGAA
1 GGGCTTTAGCGACGTTTTT-GAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTT-GAA
20320474 -AAACGCCGCTAAT
64 GAAACGCCGCTAAT
20320487 AATCGAGGCT
Statistics
Matches: 71, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
93 66 0.93
94 5 0.07
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (93 bp):
GGGCTTTAGCGACGTTTTTGAAGAAGCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTGAAGA
AACGCCGCTAATGCTCTAGGCTTGCTCT
Found at i:20320517 original size:134 final size:134
Alignment explanation
Indices: 20320277--20320533 Score: 369
Period size: 134 Copynumber: 1.9 Consensus size: 134
20320267 TAATGTTCGA
*
20320277 GGCTTTAGCGGCGTTTTTGAAGAAGCGTCGCTAATCCTCGGGGCTTTAGCGACGTTTTTGAAGAA
1 GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATCCTCGGGGCTTTAGCGACGTTTTTGAAGAA
* ** *
20320342 GCGCCGCTAATGCTCTGGTCTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTCTAGGCTTGC
66 ACGCCGCTAATAATCTGGGCTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTCTAGGCTTGC
20320407 TCTG
131 TCTG
* * * *
20320411 GGCTTTAGCGGCGTTTTTGGAA-AAGCGCCGCTAATGCTCTGGTCTTTAGCGGCGTTTTTGGAA-
1 GGCTTTAGCGGCGTTTTT-GAAGAAGCGCCGCTAATCCTCGGGGCTTTAGCGACGTTTTT-GAAG
20320474 AAACGCCGCTAATAATC-GAGGCTTTAGCGGC-TTTTTTGAAGAAGCGCCGCTAATGCTCTA
64 AAACGCCGCTAATAATCTG-GGCTTTAGCGGCATTTTTT-AAGAAGCGCCGCTAATGCTCTA
20320534 TTTTTAGCGG
Statistics
Matches: 110, Mismatches: 9, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
133 7 0.06
134 97 0.88
135 6 0.05
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (134 bp):
GGCTTTAGCGGCGTTTTTGAAGAAGCGCCGCTAATCCTCGGGGCTTTAGCGACGTTTTTGAAGAA
ACGCCGCTAATAATCTGGGCTTTAGCGGCATTTTTTAAGAAGCGCCGCTAATGCTCTAGGCTTGC
TCTG
Found at i:20321077 original size:13 final size:13
Alignment explanation
Indices: 20321061--20321098 Score: 58
Period size: 14 Copynumber: 2.8 Consensus size: 13
20321051 CGAAATCCGG
*
20321061 GAGTTGAATCCTA
1 GAGTTGAATCCAA
20321074 GAGTTGAAATCCAA
1 GAGTTG-AATCCAA
20321088 GAGTTGAATCC
1 GAGTTGAATCC
20321099 CTTATAAAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 11 0.48
14 12 0.52
ACGTcount: A:0.34, C:0.16, G:0.24, T:0.26
Consensus pattern (13 bp):
GAGTTGAATCCAA
Found at i:20324545 original size:43 final size:43
Alignment explanation
Indices: 20324477--20324747 Score: 400
Period size: 43 Copynumber: 6.3 Consensus size: 43
20324467 GTAGAAACGC
* * * * *
20324477 CTTTAGTGGCGTTTTTAGGAAAAGCGTCGCTAAAGGTCATGGC
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
*
20324520 CTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
*
20324563 CTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
* *
20324606 CTATAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCTTGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
* * *
20324649 CTTTAGCGGCGTTTTTGGG-AAAGCGCCGTTAAAGGCCATGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
* *
20324691 CTTTAGCGGAGTTTGTGGAAAAAGCGCCGCTAAAGGTCATGGT
1 CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
*
20324734 CTTTAGTGGCGTTT
1 CTTTAGCGGCGTTT
20324748 ATTTCTAAAA
Statistics
Matches: 208, Mismatches: 19, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
42 36 0.17
43 172 0.83
ACGTcount: A:0.22, C:0.18, G:0.33, T:0.27
Consensus pattern (43 bp):
CTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGGTCATGGT
Found at i:20326362 original size:42 final size:43
Alignment explanation
Indices: 20326253--20326522 Score: 332
Period size: 43 Copynumber: 6.3 Consensus size: 43
20326243 TTTTAGAAAT
* *
20326253 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTTCCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
*
20326296 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGC-TTTCCCAA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * * *
20326338 AAATGCCGCTAAAAACCA-GAACCTTTAGCGGCACTTTTTCCAC
1 AAACGCCGCTAAAGACCATG-ACCTTTAGCGGCGCTTTTCCCAC
** *
20326381 AAACGCCGCTAAAGACCAAAACC-TTAGCGGCGCTTTTCTCAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
20326423 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCAT
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* * *
20326466 AAACGCCGCTATAAG-CCATGACCTTTAGCGACTCTTTTCCCAA
1 AAACGCCGCTA-AAGACCATGACCTTTAGCGGCGCTTTTCCCAC
* *
20326509 AAACTCCACTAAAG
1 AAACGCCGCTAAAG
20326523 GCGTTTCTAC
Statistics
Matches: 195, Mismatches: 27, Indels: 11
0.84 0.12 0.05
Matches are distributed among these distances:
41 1 0.01
42 73 0.37
43 119 0.61
44 2 0.01
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23
Consensus pattern (43 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTCCCAC
Found at i:20326376 original size:85 final size:86
Alignment explanation
Indices: 20326253--20326522 Score: 350
Period size: 85 Copynumber: 3.2 Consensus size: 86
20326243 TTTTAGAAAT
*
20326253 AAACGCCGCTAAAGACCATGATCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGAC
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGAC
20326318 CTTTAGCGGCGC-TTTCCCAA
66 CTTTAGCGGCGCTTTTCCCAA
* * * **
20326338 AAATGCCGCTAAAAACCA-GAACCTTTAGCGGCACTTTTTCCACAAACGCCGCTAAAGACCAAAA
1 AAACGCCGCTAAAGACCATG-ACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGA
* *
20326402 CC-TTAGCGGCGCTTTTCTCAC
65 CCTTTAGCGGCGCTTTTCCCAA
* * * *
20326423 AAACGCCGCTATAGATCATGACCTTTAGCGGCGCTTTTCCCATAAACGCCGCTATAAG-CCATGA
1 AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTA-AAGACCATGA
* *
20326487 CCTTTAGCGACTCTTTTCCCAA
65 CCTTTAGCGGCGCTTTTCCCAA
* *
20326509 AAACTCCACTAAAG
1 AAACGCCGCTAAAG
20326523 GCGTTTCTAC
Statistics
Matches: 156, Mismatches: 24, Indels: 9
0.83 0.13 0.05
Matches are distributed among these distances:
84 11 0.07
85 115 0.74
86 30 0.19
ACGTcount: A:0.29, C:0.31, G:0.16, T:0.23
Consensus pattern (86 bp):
AAACGCCGCTAAAGACCATGACCTTTAGCGGCGCTTTTTCCACAAACGCCGCTAAAGACCATGAC
CTTTAGCGGCGCTTTTCCCAA
Found at i:20331069 original size:21 final size:22
Alignment explanation
Indices: 20331037--20331078 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 22
20331027 AGGATACCAA
20331037 TTTTAGGGGGGGAAATTAGGGG
1 TTTTAGGGGGGGAAATTAGGGG
20331059 TTTTA-GGGGGGAAATTAGGG
1 TTTTAGGGGGGGAAATTAGGG
20331079 AAAAAAAGGC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 15 0.75
22 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.48, T:0.29
Consensus pattern (22 bp):
TTTTAGGGGGGGAAATTAGGGG
Found at i:20331586 original size:7 final size:7
Alignment explanation
Indices: 20331576--20331607 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
20331566 CTCTTAACAT
20331576 CTAACCC
1 CTAACCC
20331583 CTAA--C
1 CTAACCC
20331588 CTAACCC
1 CTAACCC
20331595 CTAACCC
1 CTAACCC
20331602 CTAACC
1 CTAACC
20331608 TTTATCCCCT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
5 5 0.22
7 18 0.78
ACGTcount: A:0.31, C:0.53, G:0.00, T:0.16
Consensus pattern (7 bp):
CTAACCC
Found at i:20331593 original size:12 final size:12
Alignment explanation
Indices: 20331576--20331600 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20331566 CTCTTAACAT
20331576 CTAACCCCTAAC
1 CTAACCCCTAAC
20331588 CTAACCCCTAAC
1 CTAACCCCTAAC
20331600 C
1 C
20331601 CCTAACCTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.52, G:0.00, T:0.16
Consensus pattern (12 bp):
CTAACCCCTAAC
Found at i:20331651 original size:8 final size:8
Alignment explanation
Indices: 20331638--20331681 Score: 56
Period size: 8 Copynumber: 5.8 Consensus size: 8
20331628 TTATAAAACA
*
20331638 TAAACCCT
1 TAAACCCC
20331646 TAAACCCC
1 TAAACCCC
20331654 T-AACCCC
1 TAAACCCC
*
20331661 TAAA-TCC
1 TAAACCCC
20331668 TAAACCCC
1 TAAACCCC
20331676 TAAACC
1 TAAACC
20331682 TTAAACCTCA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
7 13 0.42
8 18 0.58
ACGTcount: A:0.39, C:0.43, G:0.00, T:0.18
Consensus pattern (8 bp):
TAAACCCC
Found at i:20331658 original size:15 final size:15
Alignment explanation
Indices: 20331655--20331702 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
20331645 TTAAACCCCT
20331655 AACCCCTAAATCC-TA
1 AACCCCTAAA-CCTTA
20331670 AACCCCTAAACCTTA
1 AACCCCTAAACCTTA
* *
20331685 AACCTC-AACCCTTA
1 AACCCCTAAACCTTA
20331699 AACC
1 AACC
20331703 ATAAATCATA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
14 13 0.43
15 17 0.57
ACGTcount: A:0.40, C:0.42, G:0.00, T:0.19
Consensus pattern (15 bp):
AACCCCTAAACCTTA
Found at i:20331728 original size:14 final size:14
Alignment explanation
Indices: 20331711--20331750 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
20331701 CCATAAATCA
20331711 TAAACAATAATCCC
1 TAAACAATAATCCC
*
20331725 TAAACCCATAATCCC
1 TAAA-CAATAATCCC
*
20331740 TAAACTATAAT
1 TAAACAATAAT
20331751 GATAATTAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 10 0.43
15 13 0.57
ACGTcount: A:0.47, C:0.28, G:0.00, T:0.25
Consensus pattern (14 bp):
TAAACAATAATCCC
Found at i:20333106 original size:41 final size:41
Alignment explanation
Indices: 20333061--20333333 Score: 253
Period size: 41 Copynumber: 6.1 Consensus size: 41
20333051 TAAAATATTT
* *
20333061 TAAAGACCAAAGCATTAGCGGCGCTTCTTCAAAAACGCCAC
1 TAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
20333102 TAAAGACCAGAGCATTAGCGGCGCTT-TTCCAAAAACGCCGC
1 TAAAGACCAGAGCATTAGCGGCGCTTCTT-CAAAAACGCCGC
20333143 TAAATCCCAGAGCAAGCCTAGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
1 T--A----A-AG--A-CC-AGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* *
20333195 TAAAGCCCAAAGCATTAGCGGCGCTT-TTCCAAAAACGCCGC
1 TAAAGACCAGAGCATTAGCGGCGCTTCTT-CAAAAACGCCGC
20333236 TAAATCCCAGAGCAAGCCTAGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
1 T--A----A-AG--A-CC-AGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
* * *
20333288 TAAAGCCCAGATCATTAGCGGCGCTTCTTAAAAAACGCCGC
1 TAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
20333329 TAAAG
1 TAAAG
20333334 GTCCAAAAAC
Statistics
Matches: 197, Mismatches: 9, Indels: 52
0.76 0.03 0.20
Matches are distributed among these distances:
40 4 0.02
41 103 0.52
42 4 0.02
43 2 0.01
45 4 0.02
46 2 0.01
47 2 0.01
48 4 0.02
50 3 0.02
51 4 0.02
52 61 0.31
53 4 0.02
ACGTcount: A:0.33, C:0.30, G:0.20, T:0.18
Consensus pattern (41 bp):
TAAAGACCAGAGCATTAGCGGCGCTTCTTCAAAAACGCCGC
Found at i:20333188 original size:52 final size:52
Alignment explanation
Indices: 20333110--20333298 Score: 251
Period size: 52 Copynumber: 3.8 Consensus size: 52
20333100 ACTAAAGACC
20333110 AGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
1 AGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
20333162 AGAGCATTAGCGGCGCTTCTT-CAAAAACGCCGCT--A----A-AGC---CC-
1 AGAGCATTAGCGGCGCTT-TTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
*
20333203 AAAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
1 AGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
*
20333255 AGAGCATTAGCGGCGCTTCTT-CAAAAACGCCGCTAAAGCCCAGA
1 AGAGCATTAGCGGCGCTT-TTCCAAAAACGCCGCTAAATCCCAGA
20333299 TCATTAGCGG
Statistics
Matches: 120, Mismatches: 3, Indels: 28
0.79 0.02 0.19
Matches are distributed among these distances:
40 2 0.02
41 30 0.25
42 2 0.02
43 1 0.01
45 3 0.03
46 1 0.01
47 1 0.01
48 3 0.03
50 1 0.01
51 2 0.02
52 70 0.58
53 4 0.03
ACGTcount: A:0.31, C:0.31, G:0.21, T:0.17
Consensus pattern (52 bp):
AGAGCATTAGCGGCGCTTTTCCAAAAACGCCGCTAAATCCCAGAGCAAGCCT
Found at i:20333230 original size:93 final size:93
Alignment explanation
Indices: 20333071--20333332 Score: 463
Period size: 93 Copynumber: 2.8 Consensus size: 93
20333061 TAAAGACCAA
* *
20333071 AGCATTAGCGGCGCTTCTTCAAAAACGCCACTAAAGACCAGAGCATTAGCGGCGCTTTTCCAAAA
1 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTTCCAAAA
20333136 ACGCCGCTAAATCCCAGAGCAAGCCTAG
66 ACGCCGCTAAATCCCAGAGCAAGCCTAG
*
20333164 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAAAGCATTAGCGGCGCTTTTCCAAAA
1 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTTCCAAAA
20333229 ACGCCGCTAAATCCCAGAGCAAGCCTAG
66 ACGCCGCTAAATCCCAGAGCAAGCCTAG
* *
20333257 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAGATCATTAGCGGCGCTTCTT-AAAA
1 AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTT-TTCCAAA
20333321 AACGCCGCTAAA
65 AACGCCGCTAAA
20333333 GGTCCAAAAA
Statistics
Matches: 162, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
93 160 0.99
94 2 0.01
ACGTcount: A:0.32, C:0.30, G:0.20, T:0.18
Consensus pattern (93 bp):
AGCATTAGCGGCGCTTCTTCAAAAACGCCGCTAAAGCCCAGAGCATTAGCGGCGCTTTTCCAAAA
ACGCCGCTAAATCCCAGAGCAAGCCTAG
Found at i:20333398 original size:39 final size:39
Alignment explanation
Indices: 20333355--20333494 Score: 115
Period size: 39 Copynumber: 3.4 Consensus size: 39
20333345 CAAAAAACGA
20333355 CATTTTTAGCGGCGCTTATTGGAAAACGCCGCTAATGCT
1 CATTTTTAGCGGCGCTTATTGGAAAACGCCGCTAATGCT
** *
20333394 CATTTTTAGCGGCG-TT-TTCCAAAAAACGCCGCTAATGTT
1 CATTTTTAGCGGCGCTTATT--GGAAAACGCCGCTAATGCT
*
20333433 GGATCTTTAGCGGCGTTAGCGGCGC-TATTGGAAAACGCCGCTAATGCT
1 -CA--TTT-------TTAGCGGCGCTTATTGGAAAACGCCGCTAATGCT
20333481 CATTTTTAGCGGCG
1 CATTTTTAGCGGCG
20333495 TTTTCCAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 29
0.68 0.07 0.25
Matches are distributed among these distances:
37 2 0.03
38 11 0.14
39 30 0.38
40 1 0.01
42 3 0.04
45 3 0.04
47 1 0.01
48 16 0.20
49 10 0.13
50 2 0.03
ACGTcount: A:0.22, C:0.23, G:0.25, T:0.30
Consensus pattern (39 bp):
CATTTTTAGCGGCGCTTATTGGAAAACGCCGCTAATGCT
Found at i:20333507 original size:87 final size:88
Alignment explanation
Indices: 20333360--20333536 Score: 347
Period size: 87 Copynumber: 2.0 Consensus size: 88
20333350 AACGACATTT
20333360 TTAGCGGCGCTTATTGGAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAACGCCG
1 TTAGCGGCGCTTATTGGAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAACGCCG
20333425 CTAATGTTGGATCTTTAGCGGCG
66 CTAATGTTGGATCTTTAGCGGCG
20333448 TTAGCGGCGC-TATTGGAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAACGCCG
1 TTAGCGGCGCTTATTGGAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAACGCCG
20333512 CTAATGTTGGATCTTTAGCGGCG
66 CTAATGTTGGATCTTTAGCGGCG
20333535 TT
1 TT
20333537 TTAGAAAAAA
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
87 79 0.89
88 10 0.11
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.30
Consensus pattern (88 bp):
TTAGCGGCGCTTATTGGAAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAAAAAACGCCG
CTAATGTTGGATCTTTAGCGGCG
Found at i:20333545 original size:40 final size:39
Alignment explanation
Indices: 20333464--20333578 Score: 140
Period size: 40 Copynumber: 2.9 Consensus size: 39
20333454 GCGCTATTGG
* * *
20333464 AAAACGCCGCTAATGCTCATTTTTAGCGGCGTTTTCCAA
1 AAAACGCCGCTAATGTTGATTTTTAGCGGCGTTTTACAA
* *
20333503 AAAACGCCGCTAATGTTGGATCTTTAGCGGCGTTTTAGAA
1 AAAACGCCGCTAATGTT-GATTTTTAGCGGCGTTTTACAA
* * *
20333543 AAAACGCTGCTATTGCTTGATTTTTAGCAGCGTTTT
1 AAAACGCCGCTAATG-TTGATTTTTAGCGGCGTTTT
20333579 TTATCCGAAC
Statistics
Matches: 65, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
39 16 0.25
40 47 0.72
41 2 0.03
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.34
Consensus pattern (39 bp):
AAAACGCCGCTAATGTTGATTTTTAGCGGCGTTTTACAA
Found at i:20336725 original size:6 final size:6
Alignment explanation
Indices: 20336714--20336747 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
20336704 ATAAGAATTG
20336714 TCTCCC TCTCCC TCTCCC TCTCCC TCTCCC TCTC
1 TCTCCC TCTCCC TCTCCC TCTCCC TCTCCC TCTC
20336748 AGTCGAAGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35
Consensus pattern (6 bp):
TCTCCC
Found at i:20340684 original size:22 final size:23
Alignment explanation
Indices: 20340649--20340692 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
20340639 AAATAATGGT
20340649 TTAAAACATGTAAAACATTTTTC
1 TTAAAACATGTAAAACATTTTTC
* *
20340672 TTAAAAC-TTTAAAATATTTTT
1 TTAAAACATGTAAAACATTTTT
20340693 AAATTACATC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.43, C:0.09, G:0.02, T:0.45
Consensus pattern (23 bp):
TTAAAACATGTAAAACATTTTTC
Found at i:20341611 original size:17 final size:18
Alignment explanation
Indices: 20341582--20341616 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
20341572 TTATATTTAT
20341582 TTTAAAAATAATAAAAAA
1 TTTAAAAATAATAAAAAA
20341600 TTTAAAAA-AATAAAAAA
1 TTTAAAAATAATAAAAAA
20341617 GGNNNNNNNN
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.53
18 8 0.47
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
TTTAAAAATAATAAAAAA
Found at i:20346561 original size:30 final size:31
Alignment explanation
Indices: 20346504--20346563 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
20346494 ATAAATGCCA
* *
20346504 AAAAAAATTACGTGAATAGATCAATTTTTTT
1 AAAAAAATTACGGGAATAGAGCAATTTTTTT
* *
20346535 AAAAAAATTATGGGAATA-AGCTATTTTTT
1 AAAAAAATTACGGGAATAGAGCAATTTTTT
20346564 GGAAATCACT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
30 9 0.36
31 16 0.64
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (31 bp):
AAAAAAATTACGGGAATAGAGCAATTTTTTT
Found at i:20346662 original size:41 final size:41
Alignment explanation
Indices: 20346617--20346754 Score: 138
Period size: 41 Copynumber: 3.4 Consensus size: 41
20346607 GCATGTTGTA
*
20346617 TTGAAAACGCTTTCAACTAGAATCGCTTTTTGCTAAGTCAC
1 TTGAAAACGCTTCCAACTAGAATCGCTTTTTGCTAAGTCAC
* * * * *
20346658 TTGAAAATGCTTCCAACTGGAAGCG-TTTTCAGC-ATATTGCA-
1 TTGAAAACGCTTCCAACTAGAATCGCTTTT-TGCTA-AGT-CAC
* * *
20346699 TGGAAAACGCTTCCATCTAGAATCGCTTTCTGCTAAGTCAC
1 TTGAAAACGCTTCCAACTAGAATCGCTTTTTGCTAAGTCAC
*
20346740 TTGAAAATGCTTCCA
1 TTGAAAACGCTTCCA
20346755 GTTGGAAGTG
Statistics
Matches: 75, Mismatches: 16, Indels: 12
0.73 0.16 0.12
Matches are distributed among these distances:
40 7 0.09
41 62 0.83
42 6 0.08
ACGTcount: A:0.29, C:0.22, G:0.17, T:0.32
Consensus pattern (41 bp):
TTGAAAACGCTTCCAACTAGAATCGCTTTTTGCTAAGTCAC
Found at i:20346705 original size:82 final size:82
Alignment explanation
Indices: 20346593--20346768 Score: 262
Period size: 82 Copynumber: 2.1 Consensus size: 82
20346583 CAGGAAAACT
* * * * * *
20346593 TGGAAGCGTTTTTAGCATGTTGTATTGAAAACGCTTTCAACTAGAATCGCTTTTTGCTAAGTCAC
1 TGGAAGCGTTTTCAGCATATTGCATGGAAAACGCTTCCAACTAGAATCGCTTTCTGCTAAGTCAC
20346658 TTGAAAATGCTTCCAAC
66 TTGAAAATGCTTCCAAC
*
20346675 TGGAAGCGTTTTCAGCATATTGCATGGAAAACGCTTCCATCTAGAATCGCTTTCTGCTAAGTCAC
1 TGGAAGCGTTTTCAGCATATTGCATGGAAAACGCTTCCAACTAGAATCGCTTTCTGCTAAGTCAC
**
20346740 TTGAAAATGCTTCCAGT
66 TTGAAAATGCTTCCAAC
*
20346757 TGGAAGTGTTTT
1 TGGAAGCGTTTT
20346769 TCCCCCCAAC
Statistics
Matches: 84, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
82 84 1.00
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.35
Consensus pattern (82 bp):
TGGAAGCGTTTTCAGCATATTGCATGGAAAACGCTTCCAACTAGAATCGCTTTCTGCTAAGTCAC
TTGAAAATGCTTCCAAC
Found at i:20347144 original size:34 final size:32
Alignment explanation
Indices: 20347095--20347171 Score: 84
Period size: 34 Copynumber: 2.3 Consensus size: 32
20347085 AATGATAATA
*
20347095 ATATTTCTTATTATATTTTAATGTTGCATAATTTT-T
1 ATATTT-TT-TTATATTTGAAT-TT--ATAATTTTGT
*
20347131 ATATTTTTTTATATTTGAATTTATTATTTTGT
1 ATATTTTTTTATATTTGAATTTATAATTTTGT
20347163 ATATTTTTT
1 ATATTTTTT
20347172 CCTTAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
31 7 0.18
32 10 0.26
33 2 0.05
34 11 0.29
35 2 0.05
36 6 0.16
ACGTcount: A:0.26, C:0.03, G:0.05, T:0.66
Consensus pattern (32 bp):
ATATTTTTTTATATTTGAATTTATAATTTTGT
Found at i:20349672 original size:20 final size:18
Alignment explanation
Indices: 20349622--20349673 Score: 54
Period size: 20 Copynumber: 2.8 Consensus size: 18
20349612 CTACAAGATA
20349622 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
20349639 AATATTAAGA-TAATCACTTT
1 AATATTAA-ATTAAT-A-TTT
*
20349659 GATATTAAATTAATA
1 AATATTAAATTAATA
20349674 AAATATTATT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
17 11 0.38
18 1 0.03
19 3 0.10
20 14 0.48
ACGTcount: A:0.50, C:0.04, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:20349732 original size:68 final size:71
Alignment explanation
Indices: 20349589--20349733 Score: 154
Period size: 68 Copynumber: 2.1 Consensus size: 71
20349579 TATTAAATCT
* * *
20349589 TATTAAATTAATAGAATATTTATCTACAAGATAAATATTAAATTAAATTTAATATTAAGATAATC
1 TATTAAATTAATAAAATATTTATCTA-AAGATAAATATCAAATGAAATTTAATATTAAGATAATC
*** *
20349654 ACTTTGA
65 AAAATAA
* * *
20349661 TATTAAATTAATAAAATA-TTAT-T-AAGATAAGTATCAAATGAAATTTAATATTAA-ATCTATT
1 TATTAAATTAATAAAATATTTATCTAAAGATAAATATCAAATGAAATTTAATATTAAGAT-AATC
20349722 AAAATAA
65 AAAATAA
20349729 TATTA
1 TATTA
20349734 TTATTTTAAA
Statistics
Matches: 62, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
67 2 0.03
68 38 0.61
70 1 0.02
71 4 0.06
72 17 0.27
ACGTcount: A:0.51, C:0.04, G:0.05, T:0.40
Consensus pattern (71 bp):
TATTAAATTAATAAAATATTTATCTAAAGATAAATATCAAATGAAATTTAATATTAAGATAATCA
AAATAA
Found at i:20353324 original size:89 final size:89
Alignment explanation
Indices: 20353168--20353345 Score: 284
Period size: 89 Copynumber: 2.0 Consensus size: 89
20353158 GCTGAAGCTT
** *
20353168 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCGGCACTGGTGCCTCAAATCTCACAGTAGAGCCT
1 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCAACACTGGTGCCTCAAATCTCACAGCAGAGCCT
20353233 TTCATTCCACTACGACTATTACCC
66 TTCATTCCACTACGACTATTACCC
* * * *
20353257 CCTCTCGAGCACGGATCGCATGAGCTTTAGTCAACACTGGTGCCTCAGATCTCACAGCAGAGTCT
1 CCTCTCGAGCACAGATCGCATAAGCTTTAGTCAACACTGGTGCCTCAAATCTCACAGCAGAGCCT
*
20353322 TTCGTTCCACTACGACTATTACCC
66 TTCATTCCACTACGACTATTACCC
20353346 GCATTACCAG
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
89 81 1.00
ACGTcount: A:0.24, C:0.33, G:0.18, T:0.26
Consensus pattern (89 bp):
CCTCTCGAGCACAGATCGCATAAGCTTTAGTCAACACTGGTGCCTCAAATCTCACAGCAGAGCCT
TTCATTCCACTACGACTATTACCC
Found at i:20360358 original size:26 final size:26
Alignment explanation
Indices: 20360295--20360364 Score: 77
Period size: 26 Copynumber: 2.7 Consensus size: 26
20360285 CTTTACATTG
* *
20360295 TTGCTCACACGAGCTGGGAAATAGGC
1 TTGCTCACACGAGCTGTGAAATAGGA
* * * * *
20360321 CTGCTTATACGAGTTGTGAAATGGGA
1 TTGCTCACACGAGCTGTGAAATAGGA
20360347 TTGCTCACACGAGCTGTG
1 TTGCTCACACGAGCTGTG
20360365 GGTCAAAATG
Statistics
Matches: 33, Mismatches: 11, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.24, C:0.20, G:0.30, T:0.26
Consensus pattern (26 bp):
TTGCTCACACGAGCTGTGAAATAGGA
Found at i:20363690 original size:5 final size:5
Alignment explanation
Indices: 20363682--20363736 Score: 76
Period size: 5 Copynumber: 11.0 Consensus size: 5
20363672 TTTAAAAACA
* *
20363682 CATAT CATAT TATAT CATAT CA-AT ACATAT CATAT CATAT CATAC CATAT
1 CATAT CATAT CATAT CATAT CATAT -CATAT CATAT CATAT CATAT CATAT
20363732 CATAT
1 CATAT
20363737 AATAAATATG
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
4 2 0.05
5 40 0.91
6 2 0.05
ACGTcount: A:0.42, C:0.20, G:0.00, T:0.38
Consensus pattern (5 bp):
CATAT
Found at i:20376829 original size:38 final size:38
Alignment explanation
Indices: 20376779--20376883 Score: 147
Period size: 39 Copynumber: 2.7 Consensus size: 38
20376769 TTATCGAAAT
* * *
20376779 CATTGTTATAATTGTTGTAATTATAATTTACGATCGAA
1 CATTATTATAATTATTGTAATTATAATTTACGATCAAA
* *
20376817 TATTATTATAATTATTGTAATTATAAATTTTCGATCAAA
1 CATTATTATAATTATTGTAATTAT-AATTTACGATCAAA
*
20376856 CATTATTATAATTATGGTAATTATAATT
1 CATTATTATAATTATTGTAATTATAATT
20376884 ATTACATTCG
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
38 25 0.42
39 34 0.58
ACGTcount: A:0.38, C:0.06, G:0.09, T:0.48
Consensus pattern (38 bp):
CATTATTATAATTATTGTAATTATAATTTACGATCAAA
Done.