Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 64 of 163
Found at i:21086821 original size:89 final size:89
Alignment explanation
Indices: 21086713--21086900 Score: 254
Period size: 89 Copynumber: 2.1 Consensus size: 89
21086703 TCGAATACGG
* * *
21086713 AAAGGGATAGCTTCAGCTATCAAT-TATGAAAAGGGAT-GGTGACGACCATCGAACTATGAAAAG
1 AAAGGGATGGCTTCAGCTATCAATCTATGAAAAGGGATAGCT-ACGACCATCAAACTAT-AAAAG
21086776 GGATGGTGACAACCATCAAACTATGA
64 GGATGGTGACAACCATCAAACTATGA
* * * * *
21086802 AAAGGGATGGCTTCGGCTATCAATCTATGAAAAGGGATAGCTTCGGCTATCAAATTATAAAAGGG
1 AAAGGGATGGCTTCAGCTATCAATCTATGAAAAGGGATAGCTACGACCATCAAACTATAAAAGGG
*
21086867 ATGGTGACAACCATCGAACTATGA
66 ATGGTGACAACCATCAAACTATGA
*
21086891 AAAAGGATGG
1 AAAGGGATGG
21086901 TAATGACCAT
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
89 61 0.70
90 24 0.28
91 2 0.02
ACGTcount: A:0.38, C:0.15, G:0.26, T:0.21
Consensus pattern (89 bp):
AAAGGGATGGCTTCAGCTATCAATCTATGAAAAGGGATAGCTACGACCATCAAACTATAAAAGGG
ATGGTGACAACCATCAAACTATGA
Found at i:21086852 original size:119 final size:119
Alignment explanation
Indices: 21086684--21086989 Score: 404
Period size: 119 Copynumber: 2.6 Consensus size: 119
21086674 TCGAATACGG
* * *
21086684 AAAGGGATAGCTTCGGCTATCGAA-TACGGAAAGGGATAGCTTCAGCTATC-AATTATGAAAAGG
1 AAAGGGATAGCTTCGGCTATC-AACTATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGG
* * * *
21086747 GATGGTGACGACCATCGAACTATGAAAAGGGATGGTGACAACCATCAAACTATGA
65 GATGGTGACAACCATCGAACTATGAAAAAGGATGGTAACAACCATCAAACTATAA
*
21086802 AAAGGGATGGCTTCGGCTATCAATCTATGAAAAGGGATAGCTTCGGCTATCAAATTAT-AAAAGG
1 AAAGGGATAGCTTCGGCTATCAA-CTATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGG
** *
21086866 GATGGTGACAACCATCGAACTATGAAAAAGGATGGTAATGACCATCAAATTATAA
65 GATGGTGACAACCATCGAACTATGAAAAAGGATGGTAACAACCATCAAACTATAA
* * ** *
21086921 AAAGGGATAGCTTTGGC-AGTCAAACTATGAAAAGGGATAACTTCGATTATCAAATTATGAAAAT
1 AAAGGGATAGCTTCGGCTA-TC-AACTATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAG
21086985 GGATG
64 GGATG
21086990 TGTCAATCAT
Statistics
Matches: 165, Mismatches: 17, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
117 2 0.01
118 21 0.13
119 125 0.76
120 17 0.10
ACGTcount: A:0.39, C:0.14, G:0.24, T:0.23
Consensus pattern (119 bp):
AAAGGGATAGCTTCGGCTATCAACTATGAAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGG
ATGGTGACAACCATCGAACTATGAAAAAGGATGGTAACAACCATCAAACTATAA
Found at i:21086913 original size:89 final size:90
Alignment explanation
Indices: 21086764--21086958 Score: 256
Period size: 89 Copynumber: 2.2 Consensus size: 90
21086754 ACGACCATCG
* * *
21086764 AACTATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAGGGATGGCTTCGGCTATC-AATCT
1 AACTATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATGGCTTCGACCATCAAAT-T
*
21086828 ATGAAAAGGGATAGCTTCGGCTA-TCA
65 ATAAAAAGGGATAGCTTCGGC-AGTCA
* *
21086854 AATTAT-AAAAGGGATGGTGACAACCATCGAACTATGAAAAAGGATGG-TAAT-GACCATCAAAT
1 AACTATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATGGCT--TCGACCATCAAAT
*
21086916 TATAAAAAGGGATAGCTTTGGCAGTCA
64 TATAAAAAGGGATAGCTTCGGCAGTCA
21086943 AACTATGAAAAGGGAT
1 AACTATGAAAAGGGAT
21086959 AACTTCGATT
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
88 2 0.02
89 72 0.78
90 18 0.20
ACGTcount: A:0.41, C:0.14, G:0.24, T:0.22
Consensus pattern (90 bp):
AACTATGAAAAGGGATGGTGACAACCATCAAACTATGAAAAAGGATGGCTTCGACCATCAAATTA
TAAAAAGGGATAGCTTCGGCAGTCA
Found at i:21086954 original size:30 final size:30
Alignment explanation
Indices: 21086909--21086988 Score: 72
Period size: 30 Copynumber: 2.7 Consensus size: 30
21086899 GGTAATGACC
* *
21086909 ATCAAATTATAAAAAGGGATAGCTTTGGC-
1 ATCAAACTATGAAAAGGGATAGCTTTGGCT
* * **
21086938 AGTCAAACTATGAAAAGGGATAACTTCGATT
1 A-TCAAACTATGAAAAGGGATAGCTTTGGCT
* *
21086969 ATCAAATTATGAAAATGGAT
1 ATCAAACTATGAAAAGGGAT
21086989 GTGTCAATCA
Statistics
Matches: 41, Mismatches: 8, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
29 1 0.02
30 39 0.95
31 1 0.02
ACGTcount: A:0.44, C:0.10, G:0.19, T:0.28
Consensus pattern (30 bp):
ATCAAACTATGAAAAGGGATAGCTTTGGCT
Found at i:21099186 original size:27 final size:27
Alignment explanation
Indices: 21099144--21099196 Score: 88
Period size: 27 Copynumber: 2.0 Consensus size: 27
21099134 AGTATGATCC
21099144 TAGTCTCAATGATAATCCAAATGGTTT
1 TAGTCTCAATGATAATCCAAATGGTTT
* *
21099171 TAGTCTTAATGTTAATCCAAATGGTT
1 TAGTCTCAATGATAATCCAAATGGTT
21099197 AAGATTTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.32, C:0.13, G:0.15, T:0.40
Consensus pattern (27 bp):
TAGTCTCAATGATAATCCAAATGGTTT
Found at i:21109865 original size:19 final size:19
Alignment explanation
Indices: 21109841--21109889 Score: 89
Period size: 19 Copynumber: 2.6 Consensus size: 19
21109831 AGTCGTGTGG
21109841 CCAGGCTATGTGAGAAAGC
1 CCAGGCTATGTGAGAAAGC
*
21109860 CCAGGCTATGTGATAAAGC
1 CCAGGCTATGTGAGAAAGC
21109879 CCAGGCTATGT
1 CCAGGCTATGT
21109890 AACATTCCAA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 29 1.00
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.20
Consensus pattern (19 bp):
CCAGGCTATGTGAGAAAGC
Found at i:21110741 original size:38 final size:38
Alignment explanation
Indices: 21110688--21110807 Score: 188
Period size: 38 Copynumber: 3.2 Consensus size: 38
21110678 AACATTTATT
* *
21110688 ACACCGGCA-TCAAGCCTGCTAGGCATTAAGCCTAAATA
1 ACACCGGCACT-AAGCCTGCTAGGCATTAAGCATGAATA
21110726 ACACCGGCACTAAGCCTGCTAGGCATTAAGCATGAATA
1 ACACCGGCACTAAGCCTGCTAGGCATTAAGCATGAATA
* *
21110764 ACACCGACACTAAGCCTGCTAGGCACTAAGCATGAATA
1 ACACCGGCACTAAGCCTGCTAGGCATTAAGCATGAATA
21110802 ACACCG
1 ACACCG
21110808 CATTTGACTA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
38 76 0.99
39 1 0.01
ACGTcount: A:0.35, C:0.29, G:0.19, T:0.17
Consensus pattern (38 bp):
ACACCGGCACTAAGCCTGCTAGGCATTAAGCATGAATA
Found at i:21115328 original size:127 final size:127
Alignment explanation
Indices: 21115098--21115350 Score: 497
Period size: 127 Copynumber: 2.0 Consensus size: 127
21115088 CAAATTCCTA
21115098 CTTTGGCGGCAATCTCGGTAGCTCTTCAGGAAATACGTTTGAGAATTCACATACTGTTGGTACTT
1 CTTTGGCGGCAATCTCGGTAGCTCTTCAGGAAATACGTTTGAGAATTCACATACTGTTGGTACTT
*
21115163 GGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAGAATGTAAGCTAAAAATGCATCACAACCG
66 GGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAAAATGTAAGCTAAAAATGCATCACAACCG
21115225 CTTTGGCGGCAATCTCGGTAGCTCTTCAGGAAATACGTTTGAGAATTCACATACTGTTGGTACTT
1 CTTTGGCGGCAATCTCGGTAGCTCTTCAGGAAATACGTTTGAGAATTCACATACTGTTGGTACTT
21115290 GGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAAAATGTAAGCTAAAAATGCATCACAACC
66 GGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAAAATGTAAGCTAAAAATGCATCACAACC
21115351 TTTTCGTACT
Statistics
Matches: 125, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
127 125 1.00
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (127 bp):
CTTTGGCGGCAATCTCGGTAGCTCTTCAGGAAATACGTTTGAGAATTCACATACTGTTGGTACTT
GGTCCACCTTCTTCGCTGGCACTTTGGAGTCCAAAATGTAAGCTAAAAATGCATCACAACCG
Found at i:21123980 original size:17 final size:18
Alignment explanation
Indices: 21123947--21123980 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
21123937 CTTTGGTCAA
21123947 CATCACACCTGCTCACCT
1 CATCACACCTGCTCACCT
*
21123965 CATCACCCCT-CTCACC
1 CATCACACCTGCTCACC
21123981 AAGTGAGCCA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.21, C:0.56, G:0.03, T:0.21
Consensus pattern (18 bp):
CATCACACCTGCTCACCT
Found at i:21124239 original size:18 final size:19
Alignment explanation
Indices: 21124213--21124281 Score: 63
Period size: 19 Copynumber: 3.5 Consensus size: 19
21124203 AATTATTTAA
21124213 TTTATTTTTTATTCTATTT
1 TTTATTTTTTATTCTATTT
*
21124232 TTTATTTTTT-TTCTCTTTT
1 TTTATTTTTTATTCT-ATTT
21124251 CTTTAATGTTATTTATT-TA-TT
1 -TTT-AT-TT-TTTATTCTATTT
21124272 TTTATTTTTT
1 TTTATTTTTT
21124282 TCCTGCTTAT
Statistics
Matches: 42, Mismatches: 2, Indels: 14
0.72 0.03 0.24
Matches are distributed among these distances:
17 3 0.07
18 6 0.14
19 15 0.36
20 6 0.14
21 4 0.10
22 2 0.05
23 4 0.10
24 2 0.05
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (19 bp):
TTTATTTTTTATTCTATTT
Found at i:21124306 original size:40 final size:39
Alignment explanation
Indices: 21124218--21124311 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 39
21124208 TTTAATTTAT
* *
21124218 TTTTTATTCTATTTTTTATTTTTTTTCTCTTTTCTTTAATG
1 TTTTTATT-TA-TTTTTATTTTTTTCCTCTTTTCTTTAATA
*
21124259 TTATTTATTTATTTTTATTTTTTTCCTGCTTATT-TTTATTA
1 TT-TTTATTTATTTTTATTTTTTTCCT-CTT-TTCTTTAATA
21124300 TTTTTATTTATT
1 TTTTTATTTATT
21124312 CTCTTTAGTG
Statistics
Matches: 47, Mismatches: 3, Indels: 7
0.82 0.05 0.12
Matches are distributed among these distances:
40 25 0.53
41 14 0.30
42 8 0.17
ACGTcount: A:0.15, C:0.07, G:0.02, T:0.76
Consensus pattern (39 bp):
TTTTTATTTATTTTTATTTTTTTCCTCTTTTCTTTAATA
Found at i:21126763 original size:461 final size:462
Alignment explanation
Indices: 21126073--21126998 Score: 1398
Period size: 461 Copynumber: 2.0 Consensus size: 462
21126063 TTCTTATTAG
21126073 TTTGCTCGGAATCATGCACTACATCTAGATTTGTCTACAATTCTGCTTTTCACCATTCTGGCAAT
1 TTTGCTCGGAATCATGCACTACATCTAGATTTGTCTACAATTCTGCTTTTCACCATTCTGGCAAT
* *
21126138 TTCATCCAATATTCAGAGCAGTTTCAGTTTTCTCCCTCTCTTATGATATTATACTTATCATGTGA
66 TTCATCCAATATTCAGAGCAATTTCAGTTTTCTCCCTCTCTTATGATATTATACTTATCATATGA
* * *
21126203 TTATATTTGTTTGTACATTGAGGACAATGTACATCTTAAGTGTGGGGAGGTTATTTATATAATTA
131 TTATATCTGTTTGTACATTGAGGACAATATACATCTTAAGTGTGAGGAGGTTATTTATATAATTA
* *
21126268 TTAGAAAATCCCTGAATTATGTATTGTATTTAAATAATTTTCTCATACTTCCATTAGAATGAATT
196 TTAGAAAATCCCTAAATTATGTATTGTATTTAAATAATTTTCTCATACTTCCATTAGAATGAAAT
* * * *
21126333 TTTATCGATTTG-GAATTTTTGTTGATGT-CTTTTAGATTAATTTGTCGATAATTGTGTATTGGT
261 TTTATCAATTTGAG-ATTTTTATTGATGTGC-TTTAGATTAATTTGTAGATAATTGTGTATTAGT
*
21126396 TGATTTAAACTTTAAGACATGAGAGAATCAAGCATGATAGGCTATGTTTCA-TAAATTAAAAA-T
324 TGATTTAAACTTTAAGACATGAGAGAATCAAGCATGATAAGCTATGTTTCAGT-AATTAAAAATT
* * * * * *
21126459 TTTAGGTTGTTTCCCTGAATTGAAGTATTATCTTGAATTTTTAAATTTACAAGTTTGACATCAAA
388 TTTAGGTTGATTCCCTAAATTAAAGTATTATCTTAAAGTTTGAAATTTACAAGTTTGACATCAAA
21126524 AACCATAATT
453 AACCATAATT
* *
21126534 TTTGCTCGGAATCATGCACTACATCTAGATTTGTCTACAATTCTGCTTTTCACGATTCTGGCATT
1 TTTGCTCGGAATCATGCACTACATCTAGATTTGTCTACAATTCTGCTTTTCACCATTCTGGCAAT
* * * *
21126599 TTCATCCAATATTCAGGGCAAATTT-TGTTTTCTCCCTCTCTTATGATATTCT-GTTCAT-ACTA
66 TTCATCCAATATTCAGAGC-AATTTCAGTTTTCTCCCTCTCTTATGATATTATACTT-ATCA-TA
* * *
21126661 TGATTATATCTGTTTGTCCATTGAGGACATTATACATCTTAAGTGTGAGGAGGTTATTTTTATAA
128 TGATTATATCTGTTTGTACATTGAGGACAATATACATCTTAAGTGTGAGGAGGTTATTTATATAA
* * * * *
21126726 TTATTAGAAAATCTCTAAATTATGTCTTGTGTTTAAATAATTTTCTCATATTTTCATTAGAATGA
193 TTATTAGAAAATCCCTAAATTATGTATTGTATTTAAATAATTTTCTCATACTTCCATTAGAATGA
*
21126791 AATTTTATCAATTTGAGATTTTTATTGATGTGCTTTGGATTAATTTGTAGATAATTGTGTATTAG
258 AATTTTATCAATTTGAGATTTTTATTGATGTGCTTTAGATTAATTTGTAGATAATTGTGTATTAG
* * * *
21126856 TTGATTTAAGCTTTAAGGCATGAGAGAATCAAGCATGATAAGTTATTTTTCAGTAATTAAAAATT
323 TTGATTTAAACTTTAAGACATGAGAGAATCAAGCATGATAAGCTATGTTTCAGTAATTAAAAATT
*
21126921 TTTAGGTTGATTCCCTAAATTAAAGTATTATCTTAAAGTTTGAGATTTACAAGTTTGACATCAAA
388 TTTAGGTTGATTCCCTAAATTAAAGTATTATCTTAAAGTTTGAAATTTACAAGTTTGACATCAAA
*
21126986 AACCATGATT
453 AACCATAATT
21126996 TTT
1 TTT
21126999 TGTGAGATTT
Statistics
Matches: 419, Mismatches: 39, Indels: 13
0.89 0.08 0.03
Matches are distributed among these distances:
460 3 0.01
461 338 0.81
462 78 0.19
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.43
Consensus pattern (462 bp):
TTTGCTCGGAATCATGCACTACATCTAGATTTGTCTACAATTCTGCTTTTCACCATTCTGGCAAT
TTCATCCAATATTCAGAGCAATTTCAGTTTTCTCCCTCTCTTATGATATTATACTTATCATATGA
TTATATCTGTTTGTACATTGAGGACAATATACATCTTAAGTGTGAGGAGGTTATTTATATAATTA
TTAGAAAATCCCTAAATTATGTATTGTATTTAAATAATTTTCTCATACTTCCATTAGAATGAAAT
TTTATCAATTTGAGATTTTTATTGATGTGCTTTAGATTAATTTGTAGATAATTGTGTATTAGTTG
ATTTAAACTTTAAGACATGAGAGAATCAAGCATGATAAGCTATGTTTCAGTAATTAAAAATTTTT
AGGTTGATTCCCTAAATTAAAGTATTATCTTAAAGTTTGAAATTTACAAGTTTGACATCAAAAAC
CATAATT
Found at i:21146545 original size:35 final size:35
Alignment explanation
Indices: 21146506--21146575 Score: 140
Period size: 35 Copynumber: 2.0 Consensus size: 35
21146496 AATGAAACAA
21146506 GAATGTCATGACAAAGCCACTACAGAAAAGAAGAT
1 GAATGTCATGACAAAGCCACTACAGAAAAGAAGAT
21146541 GAATGTCATGACAAAGCCACTACAGAAAAGAAGAT
1 GAATGTCATGACAAAGCCACTACAGAAAAGAAGAT
21146576 TAAGGAACTG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.49, C:0.17, G:0.20, T:0.14
Consensus pattern (35 bp):
GAATGTCATGACAAAGCCACTACAGAAAAGAAGAT
Found at i:21148283 original size:18 final size:19
Alignment explanation
Indices: 21148255--21148291 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
21148245 GCATTCACAT
21148255 CTTTCCTCTCTTCTCTCCA
1 CTTTCCTCTCTTCTCTCCA
*
21148274 CTTT-CTCTCTTCTTTCCA
1 CTTTCCTCTCTTCTCTCCA
21148292 TTCCAAAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 13 0.76
19 4 0.24
ACGTcount: A:0.05, C:0.43, G:0.00, T:0.51
Consensus pattern (19 bp):
CTTTCCTCTCTTCTCTCCA
Found at i:21150125 original size:38 final size:38
Alignment explanation
Indices: 21150054--21150126 Score: 119
Period size: 38 Copynumber: 1.9 Consensus size: 38
21150044 TGAATCGTAT
*
21150054 TGTTATTCAGGCTTAGTGCCTAACATGCCTAGTGCTGG
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCTGG
* *
21150092 TGTTATTCAGGCTTAGTGCCTAGCAGGCTTAGTGC
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGC
21150127 CAATGCTATT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 32 1.00
ACGTcount: A:0.18, C:0.21, G:0.27, T:0.34
Consensus pattern (38 bp):
TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCTGG
Found at i:21150137 original size:38 final size:38
Alignment explanation
Indices: 21150057--21150143 Score: 102
Period size: 38 Copynumber: 2.3 Consensus size: 38
21150047 ATCGTATTGT
* *** *
21150057 TATTCAGGCTTAGTGCCTAACATGCCTAGTGCTGGTGT
1 TATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCAATGC
* *
21150095 TATTCAGGCTTAGTGCCTAGCAGGCTTAGTGCCAATGC
1 TATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCAATGC
*
21150133 TATTCATGCTT
1 TATTCAGGCTT
21150144 GGTGTTGGTG
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.20, C:0.22, G:0.24, T:0.34
Consensus pattern (38 bp):
TATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCAATGC
Found at i:21150201 original size:38 final size:38
Alignment explanation
Indices: 21150150--21150245 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 38
21150140 GCTTGGTGTT
*
21150150 GGTGTTTTTCAGGCTTATTGCCTAGC-AGGCTTAGTGCC
1 GGTGTTATTCAGGCTTATTGCCTAGCGA-GCTTAGTGCC
* *
21150188 GGTGTTATTCAGGCATAGTGCCTAGCGAGCTTAGTGCC
1 GGTGTTATTCAGGCTTATTGCCTAGCGAGCTTAGTGCC
**
21150226 AATGTTATTCAGGCTTATTG
1 GGTGTTATTCAGGCTTATTG
21150246 TCGGTGTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
38 49 0.98
39 1 0.02
ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35
Consensus pattern (38 bp):
GGTGTTATTCAGGCTTATTGCCTAGCGAGCTTAGTGCC
Found at i:21150228 original size:98 final size:98
Alignment explanation
Indices: 21150054--21150241 Score: 279
Period size: 98 Copynumber: 1.9 Consensus size: 98
21150044 TGAATCGTAT
* * *
21150054 TGTTATTCAGGCTTAGTGCCTAACATGCCTAGTGCTGGTGTTATTCAGGCTTAGTGCCTAGCAGG
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAGG
*
21150119 CTTAGTGCCAATGCTATTCATGCTTGGTGTTGG
66 CTTAGTGCCAATGCTATTCAGGCTTGGTGTTGG
* * * *
21150152 TGTTTTTCAGGCTTATTGCCTAGCAGGCTTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGC-GA
1 TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAG-
*
21150216 GCTTAGTGCCAATGTTATTCAGGCTT
65 GCTTAGTGCCAATGCTATTCAGGCTT
21150242 ATTGTCGGTG
Statistics
Matches: 80, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
97 1 0.01
98 79 0.99
ACGTcount: A:0.18, C:0.20, G:0.27, T:0.36
Consensus pattern (98 bp):
TGTTATTCAGGCTTAGTGCCTAACAGGCCTAGTGCCGGTGTTATTCAGGCATAGTGCCTAGCAGG
CTTAGTGCCAATGCTATTCAGGCTTGGTGTTGG
Found at i:21158574 original size:335 final size:335
Alignment explanation
Indices: 21157964--21158633 Score: 1115
Period size: 335 Copynumber: 2.0 Consensus size: 335
21157954 AGTATTTGAT
* * * *
21157964 GACATAGAGGGAACTGAATCTGAGACAGTAACGGTGGTTAGAGCTATTGAAAGATTATGACCTTG
1 GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
* *
21158029 TGATTGATTACCATCCTGGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
66 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
21158094 ACTTTAAAAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
131 ACTTTAAAAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
***
21158159 GGCTAGGCCGTTATTTCTTCAGCGAATTTGGGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
196 GGCTAGGCCGTTATTTCTTCAGCGAATTCAAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
*
21158224 AACGAGAGCTGATCCAGAGTGATTCGACTATGGGATTCATTATGAGTGACAATGGTATGATGTAT
261 AACGAGAGCTGATCCAGAGTGATTCGACTAAGGGATTCATTATGAGTGACAATGGTATGATGTAT
21158289 TTTCATAATC
326 TTTCATAATC
* * *
21158299 GACATAGAAGGAACTGAATCTGAGACAGCGATAGTGGTTAGAGCTATTGAAAGATTATGGCCTCG
1 GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
* * ** *
21158364 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAGATGCTTTAAGCTGCAAATGATTGTTT
66 TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
* * * *
21158429 GCTTTAAGAACAATGAACGCACATTTATCCTTGGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
131 ACTTTAAAAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
*
21158494 GGCTAGGTCGTTATTTCTTCAGCGAATTCAAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
196 GGCTAGGCCGTTATTTCTTCAGCGAATTCAAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
*
21158559 AACGAGAGCTGATCCAGAGTGATTCGACTAAGGGATTCATTATTAGTGACAATGGTATGATGTAT
261 AACGAGAGCTGATCCAGAGTGATTCGACTAAGGGATTCATTATGAGTGACAATGGTATGATGTAT
*
21158624 TTTGATAATC
326 TTTCATAATC
21158634 AACTGTGTAT
Statistics
Matches: 310, Mismatches: 25, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
335 310 1.00
ACGTcount: A:0.31, C:0.14, G:0.24, T:0.31
Consensus pattern (335 bp):
GACATAGAAGGAACTGAATCTGAGACAGCAACAGTGGTTAGAGCTATTGAAAGATTATGACCTCG
TGATTAATTACCATCCTAGGAAGGTAAATGTTGTTGCAAATGATTTAAGCCACAAATCATTGTTT
ACTTTAAAAACAATGAACGCACATTTATCCCTAGAGAGTGATGGTTCTGTTATAGCTAAGCTTAG
GGCTAGGCCGTTATTTCTTCAGCGAATTCAAGAATTACAAAGTGATGACCTGAAGTTAGTAGCCA
AACGAGAGCTGATCCAGAGTGATTCGACTAAGGGATTCATTATGAGTGACAATGGTATGATGTAT
TTTCATAATC
Found at i:21161165 original size:22 final size:21
Alignment explanation
Indices: 21161092--21161166 Score: 88
Period size: 22 Copynumber: 3.7 Consensus size: 21
21161082 TGAATCGTAT
21161092 TGTTATTCAGGCTTAGTGCCA
1 TGTTATTCAGGCTTAGTGCCA
21161113 GTGTTATTCAGGCTTAGTGCC-
1 -TGTTATTCAGGCTTAGTGCCA
*
21161134 ---TA-GCAGGCTTAGTGCCGA
1 TGTTATTCAGGCTTAGTGCC-A
21161152 TGTTATTCAGGCTTA
1 TGTTATTCAGGCTTA
21161167 TTGTCGGTTT
Statistics
Matches: 45, Mismatches: 2, Indels: 12
0.76 0.03 0.20
Matches are distributed among these distances:
16 13 0.29
17 2 0.04
21 2 0.04
22 28 0.62
ACGTcount: A:0.19, C:0.19, G:0.27, T:0.36
Consensus pattern (21 bp):
TGTTATTCAGGCTTAGTGCCA
Found at i:21165029 original size:339 final size:331
Alignment explanation
Indices: 21164409--21165080 Score: 1184
Period size: 339 Copynumber: 2.0 Consensus size: 331
21164399 GAAGTGATGA
21164409 CTAAATATTGCAAGGGTTCAAATAAAATTAGGCCATATAGTCTCAAAGTTGGGTTTCAAAGGATA
1 CTAAATATTGCAAGGGTTCAAATAAAATTAGGCCATATAGTCTCAAAGTTGGGTTTCAAAGGATA
21164474 AAATTTCATCAAGGTTGGCTTGAAAGGCTCAAACGGTCCAAAAAAGAGTTGCCTAAATCATTTTC
66 AAATTTCATCAAGGTTGGCTTGAAAGGCTCAAACGGTCCAAAAAAGAGTTGCCTAAATCATTTTC
* *
21164539 AACATTCCATGCTTCCTAGGATTTCACCTTAAGAAACTACTAAGCCAATTCTAGAGACTTAAACT
131 AACATTCCATGCTTCCTAGGATTTCACCTCAAGAAAATACTAAGCCAATTCTAGAGACTTAAACT
* * *
21164604 TTTATGCATGCCTACCTTTCTTAAGGAACTAAAAATTTTATGGTACGATTTGCATGCTTTATTAA
196 TTTATGCATGCCTACCTTTCTTAAAGAACTAAAAACTTTATGGTACAATTTGCATGCTTTATTAA
21164669 AAATACATTTATATCATTATTTAGCTAACATAACAATTTATTGAAATAATAGAACTTTATTTATA
261 AAATACATTTATATCATTATTTAGCTAACATAACAATTTATTGAAATAATAGAACTTTATTTATA
21164734 CTGAAG
326 CTGAAG
21164740 NNNNNNNNCTAAATATTGCAAGGGTTCAAATAAAATTAGGCCATATAGTCTCAAAGTTGGGTTTC
1 --------CTAAATATTGCAAGGGTTCAAATAAAATTAGGCCATATAGTCTCAAAGTTGGGTTTC
21164805 AAAGGATAAAATTTCATCAAGGTTGGCTTGAAAGGCTCAAACGGTCCAAAAAAGAGTTGCCTAAA
58 AAAGGATAAAATTTCATCAAGGTTGGCTTGAAAGGCTCAAACGGTCCAAAAAAGAGTTGCCTAAA
* *
21164870 TCATTTTCAACATTCCATGCTTCCTAGGATTTCGCCTCAAGAAAATACTAAGTCAATTCTAGAGA
123 TCATTTTCAACATTCCATGCTTCCTAGGATTTCACCTCAAGAAAATACTAAGCCAATTCTAGAGA
*
21164935 CTTAAACTTTTCATGCATG-CTACCTTTCTTAAAGAATTAAAAACTTTATGGTACAATTTGCATG
188 CTTAAACTTTT-ATGCATGCCTACCTTTCTTAAAGAACTAAAAACTTTATGGTACAATTTGCATG
21164999 CTTTATTAAAAATACATTTATATCATTATTTAGCTAACATAACAATTTATTGAAATAATAGAACT
252 CTTTATTAAAAATACATTTATATCATTATTTAGCTAACATAACAATTTATTGAAATAATAGAACT
21165064 TTATTTATACTGAAG
317 TTATTTATACTGAAG
21165079 CT
1 CT
21165081 TAGCATACTT
Statistics
Matches: 324, Mismatches: 8, Indels: 10
0.95 0.02 0.03
Matches are distributed among these distances:
331 2 0.01
339 315 0.97
340 7 0.02
ACGTcount: A:0.36, C:0.16, G:0.14, T:0.33
Consensus pattern (331 bp):
CTAAATATTGCAAGGGTTCAAATAAAATTAGGCCATATAGTCTCAAAGTTGGGTTTCAAAGGATA
AAATTTCATCAAGGTTGGCTTGAAAGGCTCAAACGGTCCAAAAAAGAGTTGCCTAAATCATTTTC
AACATTCCATGCTTCCTAGGATTTCACCTCAAGAAAATACTAAGCCAATTCTAGAGACTTAAACT
TTTATGCATGCCTACCTTTCTTAAAGAACTAAAAACTTTATGGTACAATTTGCATGCTTTATTAA
AAATACATTTATATCATTATTTAGCTAACATAACAATTTATTGAAATAATAGAACTTTATTTATA
CTGAAG
Found at i:21171271 original size:239 final size:240
Alignment explanation
Indices: 21170841--21171319 Score: 951
Period size: 239 Copynumber: 2.0 Consensus size: 240
21170831 GCAAAAATAT
21170841 CATCTTCTCCAAAAAGCTTGCTGCCAAAATTTGAAGGACATCATAGCTAGGTTTTTAACACTTTC
1 CATCTTCTCCAAAAAGCTTGCTGCCAAAATTTGAAGGACATCATAGCTAGGTTTTTAACACTTTC
21170906 TCAAGCTCATAGTAAGTGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAGATCCTGGT
66 TCAAGCTCATAGTAAGTGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAGATCCTGGT
21170971 AGTTTAATCTAGCTTATTTTAGCAATAATTTAACATATTTTATATTTGGAAAATACCCATAGGTG
131 AGTTTAATCTAGCTTATTTTAGCAATAATTTAACATATTTTATATTTGGAAAATACCCATAGGTG
21171036 AAAAATTGTTTATTTTGATGTTTTAAGGTATGATATGAAGCTAGA
196 AAAAATTGTTTATTTTGATGTTTTAAGGTATGATATGAAGCTAGA
21171081 CATCTTCTCC-AAAAGCTTGCTGCCAAAATTTGAAGGACATCATAGCTAGGTTTTTAACACTTTC
1 CATCTTCTCCAAAAAGCTTGCTGCCAAAATTTGAAGGACATCATAGCTAGGTTTTTAACACTTTC
21171145 TCAAGCTCATAGTAAGTGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAGATCCTGGT
66 TCAAGCTCATAGTAAGTGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAGATCCTGGT
21171210 AGTTTAATCTAGCTTATTTTAGCAATAATTTAACATATTTTATATTTGGAAAATACCCATAGGTG
131 AGTTTAATCTAGCTTATTTTAGCAATAATTTAACATATTTTATATTTGGAAAATACCCATAGGTG
21171275 AAAAATTGTTTATTTTGATGTTTTAAGGTATGATATGAAGCTAGA
196 AAAAATTGTTTATTTTGATGTTTTAAGGTATGATATGAAGCTAGA
21171320 AATTATGTTA
Statistics
Matches: 239, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
239 229 0.96
240 10 0.04
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.39
Consensus pattern (240 bp):
CATCTTCTCCAAAAAGCTTGCTGCCAAAATTTGAAGGACATCATAGCTAGGTTTTTAACACTTTC
TCAAGCTCATAGTAAGTGATTCCAAGCCCCATTTTTAATGTTCTTTACGTTTTTGAGATCCTGGT
AGTTTAATCTAGCTTATTTTAGCAATAATTTAACATATTTTATATTTGGAAAATACCCATAGGTG
AAAAATTGTTTATTTTGATGTTTTAAGGTATGATATGAAGCTAGA
Found at i:21171988 original size:50 final size:50
Alignment explanation
Indices: 21171908--21172051 Score: 207
Period size: 50 Copynumber: 2.9 Consensus size: 50
21171898 ATTTGGGTAA
* * *
21171908 AGAAATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCTCCGAGACG
1 AGAAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGACG
* * *
21171958 AGAGGTCCCATGTAAGACCATGTCTGGGACATGGCGTTGGCACCAAGATG
1 AGAAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGACG
** *
21172008 AGAAGTCCCCCGTAAGACCATGTCTGGGACATGGCATGGGCACC
1 AGAAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACC
21172052 NNNNNNNNNC
Statistics
Matches: 83, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.26, C:0.25, G:0.30, T:0.19
Consensus pattern (50 bp):
AGAAGTCCCATGTAAGACCATGTCTGGGACATGGCATTGGCACCAAGACG
Found at i:21175320 original size:13 final size:13
Alignment explanation
Indices: 21175302--21175328 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
21175292 GCGAGTGAAG
21175302 TAAAAGCGTCTAC
1 TAAAAGCGTCTAC
21175315 TAAAAGCGTCTAC
1 TAAAAGCGTCTAC
21175328 T
1 T
21175329 TCATGTATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.22, G:0.15, T:0.26
Consensus pattern (13 bp):
TAAAAGCGTCTAC
Found at i:21183585 original size:12 final size:12
Alignment explanation
Indices: 21183568--21183593 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21183558 TTGAAGGTGA
21183568 TCTACTGATCAT
1 TCTACTGATCAT
21183580 TCTACTGATCAT
1 TCTACTGATCAT
21183592 TC
1 TC
21183594 ATCCTCATGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.08, T:0.42
Consensus pattern (12 bp):
TCTACTGATCAT
Found at i:21190900 original size:30 final size:29
Alignment explanation
Indices: 21190858--21190914 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 29
21190848 CCAAACTTTG
21190858 GGGAAAAATGTAAATATG-CAAAAGTTTA
1 GGGAAAAATGTAAATATGTCAAAAGTTTA
* *
21190886 GGGACAAAATTGTAATTTTGTCAAAAGTT
1 GGGA-AAAA-TGTAAATATGTCAAAAGTT
21190915 GAGTCGAAGA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
28 4 0.17
29 4 0.17
30 8 0.33
31 8 0.33
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.30
Consensus pattern (29 bp):
GGGAAAAATGTAAATATGTCAAAAGTTTA
Found at i:21202509 original size:25 final size:25
Alignment explanation
Indices: 21202481--21202563 Score: 75
Period size: 25 Copynumber: 3.4 Consensus size: 25
21202471 TGATGATAAG
21202481 ATGTTGTCCATTTTTTAGTATATTA
1 ATGTTGTCCATTTTTTAGTATATTA
** *
21202506 ATGTTGTCCA--CATT-G-ATGCTTA
1 ATGTTGTCCATTTTTTAGTAT-ATTA
* *
21202528 ATTGCTGTCCATTTTTGAGTATATTA
1 A-TGTTGTCCATTTTTTAGTATATTA
21202554 ATGTTGTCCA
1 ATGTTGTCCA
21202564 AATTGATGCT
Statistics
Matches: 43, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
21 2 0.05
22 5 0.12
23 10 0.23
25 19 0.44
26 5 0.12
27 2 0.05
ACGTcount: A:0.23, C:0.13, G:0.16, T:0.48
Consensus pattern (25 bp):
ATGTTGTCCATTTTTTAGTATATTA
Found at i:21202542 original size:48 final size:48
Alignment explanation
Indices: 21202485--21202639 Score: 238
Period size: 48 Copynumber: 3.2 Consensus size: 48
21202475 GATAAGATGT
*
21202485 TGTCCATTTTTTAGTATATTAATGTTGTCCACATTGATGCTTAATTGC
1 TGTCCATTTTTTAGTATATTAATGTTGTCCAAATTGATGCTTAATTGC
*
21202533 TGTCCATTTTTGAGTATATTAATGTTGTCCAAATTGATGCTTAATTGC
1 TGTCCATTTTTTAGTATATTAATGTTGTCCAAATTGATGCTTAATTGC
* * * * * *
21202581 TGCCCATTTTTTAGTTTATTAATGCTGTCCAAATTGGTGCTTAAATGT
1 TGTCCATTTTTTAGTATATTAATGTTGTCCAAATTGATGCTTAATTGC
21202629 TGTCCATTTTT
1 TGTCCATTTTT
21202640 GTACAAATCA
Statistics
Matches: 97, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 97 1.00
ACGTcount: A:0.23, C:0.14, G:0.15, T:0.48
Consensus pattern (48 bp):
TGTCCATTTTTTAGTATATTAATGTTGTCCAAATTGATGCTTAATTGC
Found at i:21202576 original size:22 final size:22
Alignment explanation
Indices: 21202503--21202577 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
21202493 TTTTAGTATA
*
21202503 TTAATGTTGTCCACATTGATGC
1 TTAATGTTGTCCAAATTGATGC
* ** **
21202525 TTAATTGCTGTCCATTTTTGAGTATA
1 TTAA-TGTTGTCCA-AATTGA-T-GC
21202551 TTAATGTTGTCCAAATTGATGC
1 TTAATGTTGTCCAAATTGATGC
21202573 TTAAT
1 TTAAT
21202578 TGCTGCCCAT
Statistics
Matches: 39, Mismatches: 10, Indels: 8
0.68 0.18 0.14
Matches are distributed among these distances:
22 9 0.23
23 9 0.23
24 8 0.21
25 9 0.23
26 4 0.10
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.45
Consensus pattern (22 bp):
TTAATGTTGTCCAAATTGATGC
Found at i:21219822 original size:104 final size:104
Alignment explanation
Indices: 21219642--21219844 Score: 379
Period size: 104 Copynumber: 2.0 Consensus size: 104
21219632 AAGCTTTTAC
*
21219642 TTACATCAAAGTATACAAGTCATGCATACATAGCCTGTCATTCAGTTAGGATTTAAGTATGCCAC
1 TTACATCAAAGTATACAAGTCATGCATACATAGCCCGTCATTCAGTTAGGATTTAAGTATGCCAC
21219707 ACTATGAACGTCACAAGTGAATAAATCCATAAACAAATT
66 ACTATGAACGTCACAAGTGAATAAATCCATAAACAAATT
**
21219746 TTACATCAAAGTATATGAGTCATGCATACATAGCCCGTCATTCAGTTAGGATTTAAGTATGCCAC
1 TTACATCAAAGTATACAAGTCATGCATACATAGCCCGTCATTCAGTTAGGATTTAAGTATGCCAC
21219811 ACTATGAACGTCACAAGTGAATAAATCCATAAAC
66 ACTATGAACGTCACAAGTGAATAAATCCATAAAC
21219845 GGATTTAGGA
Statistics
Matches: 96, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
104 96 1.00
ACGTcount: A:0.38, C:0.20, G:0.14, T:0.28
Consensus pattern (104 bp):
TTACATCAAAGTATACAAGTCATGCATACATAGCCCGTCATTCAGTTAGGATTTAAGTATGCCAC
ACTATGAACGTCACAAGTGAATAAATCCATAAACAAATT
Found at i:21221852 original size:53 final size:53
Alignment explanation
Indices: 21221777--21221879 Score: 188
Period size: 53 Copynumber: 1.9 Consensus size: 53
21221767 TGCTTATAAA
*
21221777 ATTTTGAGTCTGTTGAATATAGGAATATGTGAAATAGGTTTAGTAATTAATTT
1 ATTTTGAGTCTGTTGAACATAGGAATATGTGAAATAGGTTTAGTAATTAATTT
*
21221830 ATTTTGAGTCTGTTGAACATAGGAATATGTGAAATATGTTTAGTAATTAA
1 ATTTTGAGTCTGTTGAACATAGGAATATGTGAAATAGGTTTAGTAATTAA
21221880 GTAAGTTAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 48 1.00
ACGTcount: A:0.35, C:0.03, G:0.20, T:0.42
Consensus pattern (53 bp):
ATTTTGAGTCTGTTGAACATAGGAATATGTGAAATAGGTTTAGTAATTAATTT
Found at i:21223868 original size:21 final size:20
Alignment explanation
Indices: 21223847--21223885 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
21223837 AAACCTAAGA
21223847 AACCAAAAGAACA-AATCTAG
1 AACCAAAAGAA-AGAATCTAG
*
21223867 AACCTAAAGAAAGAATCTA
1 AACCAAAAGAAAGAATCTA
21223886 AGCCAATGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 16 0.94
ACGTcount: A:0.59, C:0.18, G:0.10, T:0.13
Consensus pattern (20 bp):
AACCAAAAGAAAGAATCTAG
Found at i:21224479 original size:13 final size:13
Alignment explanation
Indices: 21224461--21224490 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
21224451 CTCAAGCAAC
*
21224461 ATAAATAAAGATG
1 ATAAATAAAAATG
21224474 ATAAATAAAAATG
1 ATAAATAAAAATG
21224487 ATAA
1 ATAA
21224491 CCCTTGAGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.00, G:0.10, T:0.23
Consensus pattern (13 bp):
ATAAATAAAAATG
Found at i:21229815 original size:20 final size:20
Alignment explanation
Indices: 21229792--21229834 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
21229782 TACACTTCGA
*
21229792 TGCCCCTGTTCGCACATTGG
1 TGCCCCTATTCGCACATTGG
* *
21229812 TGCCCCTATTTGCACTTTGG
1 TGCCCCTATTCGCACATTGG
21229832 TGC
1 TGC
21229835 TTCTTACTGC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.09, C:0.33, G:0.23, T:0.35
Consensus pattern (20 bp):
TGCCCCTATTCGCACATTGG
Found at i:21237773 original size:40 final size:40
Alignment explanation
Indices: 21237729--21237806 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
21237719 AAATTGTTGT
21237729 ATGAATGCACATACATGCCCCTATTGGTACTTAAGTACCC
1 ATGAATGCACATACATGCCCCTATTGGTACTTAAGTACCC
* * * *
21237769 ATGAATGCACATACCTGCCCCTGTTTGTACTTCAGTAC
1 ATGAATGCACATACATGCCCCTATTGGTACTTAAGTAC
21237807 TTTGAATGCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.15, T:0.29
Consensus pattern (40 bp):
ATGAATGCACATACATGCCCCTATTGGTACTTAAGTACCC
Found at i:21251396 original size:30 final size:30
Alignment explanation
Indices: 21251362--21251639 Score: 192
Period size: 30 Copynumber: 9.3 Consensus size: 30
21251352 TCGATAAATA
*
21251362 AAAAGGGATAGCTTCGACTATCGATCAATG
1 AAAAGGGATAGCTTCGACTATCGATCTATG
* * *
21251392 AAAAGGGATAGCTTTGACTATCGACCAATG
1 AAAAGGGATAGCTTCGACTATCGATCTATG
* * *
21251422 AAAAGGGGTAGCTTTGACTATCGAACTATG
1 AAAAGGGATAGCTTCGACTATCGATCTATG
* ** *
21251452 AAAAGAGATAGCTTCGGTTATCAAAT-TATG
1 AAAAGGGATAGCTTCGACTATC-GATCTATG
* * * * * *
21251482 AAAGGGGAT-GGTGACGACCATC-AACAATG
1 AAAAGGGATAGCT-TCGACTATCGATCTATG
* * * * * * *
21251511 AAAAGCGAT-GGTGACAACCATCAAACTATG
1 AAAAGGGATAGCT-TCGACTATCGATCTATG
21251541 AAAAGGGATAGCTTCGACTATCGAAT-TATG
1 AAAAGGGATAGCTTCGACTATCG-ATCTATG
* * *
21251571 AAAAAGGATAGCTTCGGCTATCAAAT-TATG
1 AAAAGGGATAGCTTCGACTATC-GATCTATG
* *
21251601 AAAAGGGATAGCTTCGGCTATCAAAT-TATG
1 AAAAGGGATAGCTTCGACTATC-GATCTATG
21251631 AAAAGGGAT
1 AAAAGGGAT
21251640 GGTGACAACC
Statistics
Matches: 205, Mismatches: 36, Indels: 14
0.80 0.14 0.05
Matches are distributed among these distances:
28 1 0.00
29 24 0.12
30 176 0.86
31 4 0.02
ACGTcount: A:0.38, C:0.14, G:0.24, T:0.23
Consensus pattern (30 bp):
AAAAGGGATAGCTTCGACTATCGATCTATG
Found at i:21251483 original size:60 final size:60
Alignment explanation
Indices: 21251362--21251695 Score: 248
Period size: 60 Copynumber: 5.6 Consensus size: 60
21251352 TCGATAAATA
* * * * * * *
21251362 AAAAGGGATAGCTTCGACTATCGATCAATGAAAAGGGATAGCTTTGACTATCGACCAATG
1 AAAAGGGATAGCTTCGACTATCGAACTATGAAAAGAGATAGCTTCGACTATCAAACTATG
* * ** *
21251422 AAAAGGGGTAGCTTTGACTATCGAACTATGAAAAGAGATAGCTTCGGTTATCAAATTATG
1 AAAAGGGATAGCTTCGACTATCGAACTATGAAAAGAGATAGCTTCGACTATCAAACTATG
* * * * * * * * * *
21251482 AAAGGGGAT-GGTGACGACCATC-AACAATGAAAAGCGAT-GGTGACAACCATCAAACTATG
1 AAAAGGGATAGCT-TCGACTATCGAACTATGAAAAGAGATAGCT-TCGACTATCAAACTATG
* * *
21251541 AAAAGGGATAGCTTCGACTATCGAATTATGAAAA-AGGATAGCTTCGGCTATCAAATTATG
1 AAAAGGGATAGCTTCGACTATCGAACTATGAAAAGA-GATAGCTTCGACTATCAAACTATG
* * * * * * * * * *
21251601 AAAAGGGATAGCTTCGGCTATCAAATTATGAAAAGGGAT-GGTGACAACCATCAAAATAAG
1 AAAAGGGATAGCTTCGACTATCGAACTATGAAAAGAGATAGCT-TCGACTATCAAACTATG
*
21251661 AAAAGGGATAGCTTC-AGCTATCGAACAATGGAAAA
1 AAAAGGGATAGCTTCGA-CTATCGAACTAT-GAAAA
21251696 TGATGGTGAC
Statistics
Matches: 210, Mismatches: 54, Indels: 19
0.74 0.19 0.07
Matches are distributed among these distances:
58 2 0.01
59 44 0.21
60 157 0.75
61 7 0.03
ACGTcount: A:0.40, C:0.15, G:0.23, T:0.22
Consensus pattern (60 bp):
AAAAGGGATAGCTTCGACTATCGAACTATGAAAAGAGATAGCTTCGACTATCAAACTATG
Found at i:21251512 original size:29 final size:30
Alignment explanation
Indices: 21251479--21251549 Score: 99
Period size: 29 Copynumber: 2.4 Consensus size: 30
21251469 TTATCAAATT
* *
21251479 ATGAAAGGGGATGGTGACGACCATC-AACA
1 ATGAAAAGGGATGGTGACAACCATCAAACA
* *
21251508 ATGAAAAGCGATGGTGACAACCATCAAACT
1 ATGAAAAGGGATGGTGACAACCATCAAACA
21251538 ATGAAAAGGGAT
1 ATGAAAAGGGAT
21251550 AGCTTCGACT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
29 22 0.61
30 14 0.39
ACGTcount: A:0.42, C:0.15, G:0.27, T:0.15
Consensus pattern (30 bp):
ATGAAAAGGGATGGTGACAACCATCAAACA
Found at i:21251654 original size:30 final size:30
Alignment explanation
Indices: 21251419--21251673 Score: 160
Period size: 30 Copynumber: 8.5 Consensus size: 30
21251409 CTATCGACCA
* ** * * *
21251419 ATGAAAAGGGGTAGCTTTGACTATCGAACT
1 ATGAAAAGGGATAGCTACGACCATCAAATT
* * ***
21251449 ATGAAAAGAGATAGCTTCGGTTATCAAATT
1 ATGAAAAGGGATAGCTACGACCATCAAATT
* *
21251479 ATGAAAGGGGAT-GGTGACGACCATCAACA--
1 ATGAAAAGGGATAGCT-ACGACCATCAA-ATT
* * * *
21251508 ATGAAAAGCGAT-GGTGACAACCATCAAACT
1 ATGAAAAGGGATAGCT-ACGACCATCAAATT
* * *
21251538 ATGAAAAGGGATAGCTTCGACTATCGAATT
1 ATGAAAAGGGATAGCTACGACCATCAAATT
* * * *
21251568 ATGAAAAAGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTACGACCATCAAATT
* * *
21251598 ATGAAAAGGGATAGCTTCGGCTATCAAATT
1 ATGAAAAGGGATAGCTACGACCATCAAATT
* * *
21251628 ATGAAAAGGGAT-GGTGACAACCATCAAAAT
1 ATGAAAAGGGATAGCT-ACGACCATCAAATT
*
21251658 AAGAAAAGGGATAGCT
1 ATGAAAAGGGATAGCT
21251674 TCAGCTATCG
Statistics
Matches: 182, Mismatches: 36, Indels: 13
0.79 0.16 0.06
Matches are distributed among these distances:
28 1 0.01
29 28 0.15
30 148 0.81
31 5 0.03
ACGTcount: A:0.40, C:0.14, G:0.24, T:0.22
Consensus pattern (30 bp):
ATGAAAAGGGATAGCTACGACCATCAAATT
Found at i:21258642 original size:12 final size:12
Alignment explanation
Indices: 21258633--21258657 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21258623 TAAGAACAGG
21258633 GGCTAGAACACA
1 GGCTAGAACACA
21258645 GGCTAGAACACA
1 GGCTAGAACACA
21258657 G
1 G
21258658 ATGTGTGTCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.24, G:0.28, T:0.08
Consensus pattern (12 bp):
GGCTAGAACACA
Found at i:21263217 original size:19 final size:19
Alignment explanation
Indices: 21263189--21263227 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
21263179 TAATATTTAG
*
21263189 TTTAGGTATTAAATGTGTC
1 TTTAGGTATTAAATATGTC
* *
21263208 TTTAGTTATTTAATATGTC
1 TTTAGGTATTAAATATGTC
21263227 T
1 T
21263228 AAGTATCTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.26, C:0.05, G:0.15, T:0.54
Consensus pattern (19 bp):
TTTAGGTATTAAATATGTC
Found at i:21265487 original size:17 final size:16
Alignment explanation
Indices: 21265465--21265522 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 16
21265455 AAACGAGTGC
21265465 AAAAGAAAGAGAGCCTG
1 AAAAGAAAGAGAG-CTG
21265482 AAAAGAAA-ACGAG-TG
1 AAAAGAAAGA-GAGCTG
21265497 AAAAAGAAAGAGAGCTTG
1 -AAAAGAAAGAGAGC-TG
21265515 AAAAGAAA
1 AAAAGAAA
21265523 ACAAGTGAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
15 2 0.06
16 12 0.33
17 20 0.56
18 2 0.06
ACGTcount: A:0.60, C:0.07, G:0.26, T:0.07
Consensus pattern (16 bp):
AAAAGAAAGAGAGCTG
Found at i:21265492 original size:33 final size:33
Alignment explanation
Indices: 21265455--21265556 Score: 159
Period size: 33 Copynumber: 3.1 Consensus size: 33
21265445 AATATGAATG
* *
21265455 AAACGAGTGCAAAAGAAAGAGAGCCTGAAAAGA
1 AAACGAGTGAAAAAGAAAGAGAGCTTGAAAAGA
21265488 AAACGAGTGAAAAAGAAAGAGAGCTTGAAAAGA
1 AAACGAGTGAAAAAGAAAGAGAGCTTGAAAAGA
* *
21265521 AAACAAGTGAAAAAGAGAGAGAGCTTGAAAATGA
1 AAACGAGTGAAAAAGAAAGAGAGCTTGAAAA-GA
21265555 AA
1 AA
21265557 CGTGCGAAGA
Statistics
Matches: 64, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
33 60 0.94
34 4 0.06
ACGTcount: A:0.57, C:0.08, G:0.26, T:0.09
Consensus pattern (33 bp):
AAACGAGTGAAAAAGAAAGAGAGCTTGAAAAGA
Found at i:21265503 original size:16 final size:15
Alignment explanation
Indices: 21265455--21265533 Score: 63
Period size: 17 Copynumber: 4.9 Consensus size: 15
21265445 AATATGAATG
21265455 AAACGAGTGCAAAAGA
1 AAACGAGTG-AAAAGA
21265471 AAGA-GAGCCTGAAAAGA
1 AA-ACGAG--TGAAAAGA
21265488 AAACGAGTGAAAAAGA
1 AAACGAGTG-AAAAGA
21265504 AAGA-GAGCTTGAAAAGA
1 AA-ACGAG--TGAAAAGA
*
21265521 AAACAAGTGAAAA
1 AAACGAGTGAAAA
21265534 AGAGAGAGAG
Statistics
Matches: 53, Mismatches: 1, Indels: 19
0.73 0.01 0.26
Matches are distributed among these distances:
15 8 0.15
16 18 0.34
17 23 0.43
18 4 0.08
ACGTcount: A:0.58, C:0.09, G:0.25, T:0.08
Consensus pattern (15 bp):
AAACGAGTGAAAAGA
Found at i:21265536 original size:16 final size:16
Alignment explanation
Indices: 21265455--21265536 Score: 64
Period size: 16 Copynumber: 5.0 Consensus size: 16
21265445 AATATGAATG
*
21265455 AAACGAGTGCAAAAGA
1 AAACGAGTGAAAAAGA
21265471 AAGA-GAGCCTG-AAAAGA
1 AA-ACGAG--TGAAAAAGA
21265488 AAACGAGTGAAAAAGA
1 AAACGAGTGAAAAAGA
21265504 AAGA-GAGCTTG-AAAAGA
1 AA-ACGAG--TGAAAAAGA
*
21265521 AAACAAGTGAAAAAGA
1 AAACGAGTGAAAAAGA
21265537 GAGAGAGCTT
Statistics
Matches: 55, Mismatches: 1, Indels: 20
0.72 0.01 0.26
Matches are distributed among these distances:
15 4 0.07
16 24 0.44
17 23 0.42
18 4 0.07
ACGTcount: A:0.59, C:0.09, G:0.26, T:0.07
Consensus pattern (16 bp):
AAACGAGTGAAAAAGA
Found at i:21266915 original size:27 final size:27
Alignment explanation
Indices: 21266882--21266936 Score: 101
Period size: 27 Copynumber: 2.0 Consensus size: 27
21266872 AGATAATATC
*
21266882 ATAAATTAGGTGTAGCTTTGGAGGCTA
1 ATAAATTAAGTGTAGCTTTGGAGGCTA
21266909 ATAAATTAAGTGTAGCTTTGGAGGCTA
1 ATAAATTAAGTGTAGCTTTGGAGGCTA
21266936 A
1 A
21266937 GTATTTGGGC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.07, G:0.27, T:0.33
Consensus pattern (27 bp):
ATAAATTAAGTGTAGCTTTGGAGGCTA
Found at i:21268031 original size:16 final size:16
Alignment explanation
Indices: 21267993--21268032 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
21267983 GGTAAATGTT
* *
21267993 GAAATGGCGGGATACC
1 GAAATGTCGGAATACC
*
21268009 GAAATGTCGGAATGCC
1 GAAATGTCGGAATACC
21268025 GAAATGTC
1 GAAATGTC
21268033 AGAAAGCTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.17, G:0.33, T:0.17
Consensus pattern (16 bp):
GAAATGTCGGAATACC
Found at i:21268823 original size:27 final size:27
Alignment explanation
Indices: 21268792--21268879 Score: 124
Period size: 27 Copynumber: 3.3 Consensus size: 27
21268782 CCAATATTTA
* *
21268792 TAAAATGACCGTAATGACCCTTTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
* *
21268819 TAAAATAACTGTAATGCCCCTGTAGGG
1 TAAAATGACCGTAATGCCCCTGTAGGG
*
21268846 TAAAATGACCGTGATGCCCCTGTA-GG
1 TAAAATGACCGTAATGCCCCTGTAGGG
21268872 TAAAATGA
1 TAAAATGA
21268880 TTGTAATACC
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 10 0.19
27 44 0.81
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (27 bp):
TAAAATGACCGTAATGCCCCTGTAGGG
Found at i:21268985 original size:24 final size:24
Alignment explanation
Indices: 21268953--21269047 Score: 127
Period size: 24 Copynumber: 4.0 Consensus size: 24
21268943 CCCTCGAGGT
*
21268953 TAAATGATTGATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTGTGATG
* * * *
21268977 TAAGTGATTGATTTGTCCGAGATG
1 TAAATGACTGATTTGTCTGTGATG
*
21269001 TAAATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATG
*
21269025 TAAATGACTGATTTTTCTGTGAT
1 TAAATGACTGATTTGTCTGTGAT
21269048 AGGTATGACT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATG
Found at i:21269055 original size:24 final size:24
Alignment explanation
Indices: 21269004--21269085 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
21268994 CGAGATGTAA
* * **
21269004 ATGACTGATTTGTCTGTGATTTAA
1 ATGACTGATTTTTCTGTGATATGT
*
21269028 ATGACTGATTTTTCTGTGATAGGT
1 ATGACTGATTTTTCTGTGATATGT
*
21269052 ATGACTAATTTTTCTGTGA-ATTGT
1 ATGACTGATTTTTCTGTGATA-TGT
21269076 ATGACTGATT
1 ATGACTGATT
21269086 CTGAGCATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 1 0.02
24 48 0.98
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.46
Consensus pattern (24 bp):
ATGACTGATTTTTCTGTGATATGT
Found at i:21269210 original size:27 final size:27
Alignment explanation
Indices: 21269154--21269213 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
21269144 GGAAATATTG
*
21269154 TACTGGTGGCTTTGCCACAATCACTAT
1 TACTGGTGGCTTAGCCACAATCACTAT
* *
21269181 TACTGGTGGCTTAGCTACATAT-ACTGT
1 TACTGGTGGCTTAGCCACA-ATCACTAT
21269208 TACTGG
1 TACTGG
21269214 CAGCTTTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTTAGCCACAATCACTAT
Found at i:21269246 original size:26 final size:26
Alignment explanation
Indices: 21269202--21269252 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
21269192 TAGCTACATA
* * *
21269202 TACTGTTACTGGCAGCTTTGTTGCGG
1 TACTGTTACTGGAAACTTTGCTGCGG
*
21269228 TACTGTTGCTGGAAACTTTGCTGCG
1 TACTGTTACTGGAAACTTTGCTGCG
21269253 ATGCTGCTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGAAACTTTGCTGCGG
Found at i:21269343 original size:32 final size:32
Alignment explanation
Indices: 21269254--21269382 Score: 143
Period size: 32 Copynumber: 4.0 Consensus size: 32
21269244 TTTGCTGCGA
* *
21269254 TGCTGCTGATGGCTTTGTGTCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* * * * * *
21269286 TGTTACTG-TAGGGTGTGTACCGATCATATCAT
1 TGCTACTGAT-GGCTTTGTGCCGATCATATTAC
*
21269318 TGCTACTGATGGCTTTGTGCTGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* *
21269350 TACTACTGATGGCTTTGTGCCAATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
21269382 T
1 T
21269383 ATAATTATGG
Statistics
Matches: 77, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
31 1 0.01
32 75 0.97
33 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.40
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCGATCATATTAC
Found at i:21272513 original size:27 final size:27
Alignment explanation
Indices: 21272482--21272570 Score: 126
Period size: 27 Copynumber: 3.3 Consensus size: 27
21272472 CCTAATATTT
*
21272482 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
21272509 GTAAAATGACTGTAATTCCCCTGTAGG
1 GTAAAATGACCGTAATGCCCCTGTAGG
* *
21272536 GTAAAATGATCGTGATGCCCCTGTA-G
1 GTAAAATGACCGTAATGCCCCTGTAGG
21272562 GTAAAATGA
1 GTAAAATGA
21272571 TTGTAATACC
Statistics
Matches: 55, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
26 10 0.18
27 45 0.82
ACGTcount: A:0.33, C:0.18, G:0.24, T:0.26
Consensus pattern (27 bp):
GTAAAATGACCGTAATGCCCCTGTAGG
Found at i:21272585 original size:26 final size:26
Alignment explanation
Indices: 21272482--21272590 Score: 101
Period size: 27 Copynumber: 4.1 Consensus size: 26
21272472 CCTAATATTT
** * *
21272482 GTAAAATGACCGTAATGCCCCTATAGG
1 GTAAAATGATTGTAATACCCCTGTA-G
* *
21272509 GTAAAATGACTGTAATTCCCCTGTAGG
1 GTAAAATGATTGTAATACCCCTGTA-G
* * *
21272536 GTAAAATGATCGTGATGCCCCTGTAG
1 GTAAAATGATTGTAATACCCCTGTAG
*
21272562 GTAAAATGATTGTAATACCTCTGTTAG
1 GTAAAATGATTGTAATACCCCTG-TAG
21272589 GT
1 GT
21272591 GAATTGAACG
Statistics
Matches: 70, Mismatches: 11, Indels: 2
0.84 0.13 0.02
Matches are distributed among these distances:
26 20 0.29
27 50 0.71
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.29
Consensus pattern (26 bp):
GTAAAATGATTGTAATACCCCTGTAG
Found at i:21272676 original size:24 final size:24
Alignment explanation
Indices: 21272644--21272738 Score: 127
Period size: 24 Copynumber: 4.0 Consensus size: 24
21272634 CCCTCGAGGT
*
21272644 TAAATGATTGATTTGTCTGTGATG
1 TAAATGACTGATTTGTCTGTGATG
* * * *
21272668 TAAGTGATTGATTTGTCCGAGATG
1 TAAATGACTGATTTGTCTGTGATG
*
21272692 TAAATGACTGATTTGTCTGTGATT
1 TAAATGACTGATTTGTCTGTGATG
*
21272716 TAAATGACTGATTTTTCTGTGAT
1 TAAATGACTGATTTGTCTGTGAT
21272739 AGGTATGACT
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 62 1.00
ACGTcount: A:0.25, C:0.07, G:0.23, T:0.44
Consensus pattern (24 bp):
TAAATGACTGATTTGTCTGTGATG
Found at i:21272746 original size:24 final size:24
Alignment explanation
Indices: 21272695--21272776 Score: 94
Period size: 24 Copynumber: 3.4 Consensus size: 24
21272685 CGAGATGTAA
* * **
21272695 ATGACTGATTTGTCTGTGATTTAA
1 ATGACTGATTTTTCTGTGATATGT
*
21272719 ATGACTGATTTTTCTGTGATAGGT
1 ATGACTGATTTTTCTGTGATATGT
*
21272743 ATGACTAATTTTTCTGTGA-ATTGT
1 ATGACTGATTTTTCTGTGATA-TGT
21272767 ATGACTGATT
1 ATGACTGATT
21272777 CTGAGCATGG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
23 1 0.02
24 48 0.98
ACGTcount: A:0.24, C:0.09, G:0.21, T:0.46
Consensus pattern (24 bp):
ATGACTGATTTTTCTGTGATATGT
Found at i:21272901 original size:27 final size:27
Alignment explanation
Indices: 21272845--21272904 Score: 77
Period size: 27 Copynumber: 2.2 Consensus size: 27
21272835 GGAAATATTG
*
21272845 TACTGGTGGCTTTGCCACAATCACTAT
1 TACTGGTGGCTTAGCCACAATCACTAT
* *
21272872 TACTGGTGGCTTAGCTACATAT-ACTGT
1 TACTGGTGGCTTAGCCACA-ATCACTAT
21272899 TACTGG
1 TACTGG
21272905 CAGCTTTGTT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
27 27 0.93
28 2 0.07
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (27 bp):
TACTGGTGGCTTAGCCACAATCACTAT
Found at i:21272937 original size:26 final size:26
Alignment explanation
Indices: 21272893--21272943 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
21272883 TAGCTACATA
* * *
21272893 TACTGTTACTGGCAGCTTTGTTGCGG
1 TACTGTTACTGGAAACTTTGCTGCGG
*
21272919 TACTGTTGCTGGAAACTTTGCTGCG
1 TACTGTTACTGGAAACTTTGCTGCG
21272944 ATGCTGCTGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.14, C:0.20, G:0.29, T:0.37
Consensus pattern (26 bp):
TACTGTTACTGGAAACTTTGCTGCGG
Found at i:21273034 original size:32 final size:32
Alignment explanation
Indices: 21272945--21273073 Score: 143
Period size: 32 Copynumber: 4.0 Consensus size: 32
21272935 TTTGCTGCGA
* *
21272945 TGCTGCTGATGGCTTTGTGTCGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* * * * * *
21272977 TGTTACTG-TAGGGTGTGTACCGATCATATCAT
1 TGCTACTGAT-GGCTTTGTGCCGATCATATTAC
*
21273009 TGCTACTGATGGCTTTGTGCTGATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
* *
21273041 TACTACTGATGGCTTTGTGCCAATCATATTAC
1 TGCTACTGATGGCTTTGTGCCGATCATATTAC
21273073 T
1 T
21273074 ATAATTATGG
Statistics
Matches: 77, Mismatches: 18, Indels: 4
0.78 0.18 0.04
Matches are distributed among these distances:
31 1 0.01
32 75 0.97
33 1 0.01
ACGTcount: A:0.20, C:0.19, G:0.22, T:0.40
Consensus pattern (32 bp):
TGCTACTGATGGCTTTGTGCCGATCATATTAC
Found at i:21279686 original size:15 final size:14
Alignment explanation
Indices: 21279666--21279695 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
21279656 TAGTCATACA
21279666 TCTACTATAATAGGT
1 TCTACTATAA-AGGT
21279681 TCTACTATAAAGGT
1 TCTACTATAAAGGT
21279695 T
1 T
21279696 GTTGTCGGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (14 bp):
TCTACTATAAAGGT
Found at i:21282782 original size:19 final size:19
Alignment explanation
Indices: 21282758--21282802 Score: 81
Period size: 19 Copynumber: 2.4 Consensus size: 19
21282748 ACTTGGATTT
21282758 CCACTGAGCCAAGAGTTAG
1 CCACTGAGCCAAGAGTTAG
*
21282777 CCACTGAGCCAAGAGTTGG
1 CCACTGAGCCAAGAGTTAG
21282796 CCACTGA
1 CCACTGA
21282803 TGTTATTCTA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.29, C:0.29, G:0.27, T:0.16
Consensus pattern (19 bp):
CCACTGAGCCAAGAGTTAG
Found at i:21288535 original size:22 final size:23
Alignment explanation
Indices: 21288491--21288536 Score: 60
Period size: 22 Copynumber: 2.0 Consensus size: 23
21288481 TAAAGTTCTC
*
21288491 ATCTTTAGTGTTCTTATTTATTT
1 ATCTTTAGTGTTCTTATTCATTT
21288514 ATCTTT-GTGTTGCTT-TTCATTT
1 ATCTTTAGTGTT-CTTATTCATTT
21288536 A
1 A
21288537 ATTTTATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 12 0.57
23 9 0.43
ACGTcount: A:0.15, C:0.11, G:0.11, T:0.63
Consensus pattern (23 bp):
ATCTTTAGTGTTCTTATTCATTT
Found at i:21292272 original size:19 final size:19
Alignment explanation
Indices: 21292248--21292284 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
21292238 TTATTCTAAG
21292248 ATTTATCTACCTAAATAAT
1 ATTTATCTACCTAAATAAT
21292267 ATTTATCTACCTAAATAA
1 ATTTATCTACCTAAATAA
21292285 CTTTAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.43, C:0.16, G:0.00, T:0.41
Consensus pattern (19 bp):
ATTTATCTACCTAAATAAT
Found at i:21298071 original size:16 final size:17
Alignment explanation
Indices: 21298040--21298073 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
21298030 CAATTCATTC
21298040 CAAAATTCAAACTTTTG
1 CAAAATTCAAACTTTTG
*
21298057 CAAAATT-ACACTTTTG
1 CAAAATTCAAACTTTTG
21298073 C
1 C
21298074 CCCTAATATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.38, C:0.21, G:0.06, T:0.35
Consensus pattern (17 bp):
CAAAATTCAAACTTTTG
Found at i:21298197 original size:29 final size:29
Alignment explanation
Indices: 21298155--21298212 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
21298145 ATATCATGCT
21298155 AGCTAAATGCACTAGGGACCTATACCAAC
1 AGCTAAATGCACTAGGGACCTATACCAAC
*
21298184 AGCTAAATTCACTAGGGACCTATACCAAC
1 AGCTAAATGCACTAGGGACCTATACCAAC
21298213 TCATACAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.38, C:0.28, G:0.16, T:0.19
Consensus pattern (29 bp):
AGCTAAATGCACTAGGGACCTATACCAAC
Found at i:21302322 original size:2 final size:2
Alignment explanation
Indices: 21302315--21302348 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
21302305 AGCTAAAATA
*
21302315 AG AG AG AG AG AG AG AG AG AG AG AG AG AG CG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
21302349 TCTGGTAGTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.47, C:0.03, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:21303762 original size:35 final size:35
Alignment explanation
Indices: 21303714--21303782 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
21303704 TTAATTAATC
* *
21303714 AGCTTTGAGAATTGGAGTTCCCGAACAGTCATTGG
1 AGCTTTGACAATTGGAGTTCCCGAACAGCCATTGG
*
21303749 AGCTTTGTCAATTGGAGTTCCCGAACAGCCATTG
1 AGCTTTGACAATTGGAGTTCCCGAACAGCCATTG
21303783 AGGTAGACTT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (35 bp):
AGCTTTGACAATTGGAGTTCCCGAACAGCCATTGG
Found at i:21339942 original size:16 final size:16
Alignment explanation
Indices: 21339921--21339951 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
21339911 AATTCAATCC
21339921 ATTTCAATCAACTATA
1 ATTTCAATCAACTATA
*
21339937 ATTTCAATCCACTAT
1 ATTTCAATCAACTAT
21339952 CAAAGTGCCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.39, C:0.23, G:0.00, T:0.39
Consensus pattern (16 bp):
ATTTCAATCAACTATA
Found at i:21341578 original size:22 final size:21
Alignment explanation
Indices: 21341550--21341600 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
21341540 AAGGTGGAAG
* *
21341550 TTATGTGGCAGTTTATTTGCAA
1 TTATGTGGCAG-GTATTAGCAA
*
21341572 TTATGTGGCCGGTATTAGCAA
1 TTATGTGGCAGGTATTAGCAA
21341593 TTATGTGG
1 TTATGTGG
21341601 TGGCTTGTCC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 16 0.62
22 10 0.38
ACGTcount: A:0.22, C:0.10, G:0.27, T:0.41
Consensus pattern (21 bp):
TTATGTGGCAGGTATTAGCAA
Found at i:21342069 original size:22 final size:22
Alignment explanation
Indices: 21342043--21342087 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
21342033 TGGACTTTAA
*
21342043 TTTGGG-TTTGTTTTAATAAATT
1 TTTGGGATTTATTTTAA-AAATT
21342065 TTTGGGACTTTATTTTAAAAATT
1 TTTGGGA-TTTATTTTAAAAATT
21342088 GGACTGTGGC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 6 0.30
23 5 0.25
24 9 0.45
ACGTcount: A:0.27, C:0.02, G:0.16, T:0.56
Consensus pattern (22 bp):
TTTGGGATTTATTTTAAAAATT
Found at i:21351468 original size:22 final size:24
Alignment explanation
Indices: 21351418--21351468 Score: 56
Period size: 24 Copynumber: 2.2 Consensus size: 24
21351408 TTACAATGCT
21351418 TTTATATTTTAATAATTGAGTATTA
1 TTTATATTTTAAT-ATTGAGTATTA
21351443 -TTATATATTTAAT-TTGA-T-TTA
1 TTTATAT-TTTAATATTGAGTATTA
21351464 TTTAT
1 TTTAT
21351469 TTATAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 7
0.77 0.00 0.23
Matches are distributed among these distances:
21 3 0.12
22 5 0.21
23 4 0.17
24 6 0.25
25 6 0.25
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (24 bp):
TTTATATTTTAATATTGAGTATTA
Found at i:21368024 original size:27 final size:27
Alignment explanation
Indices: 21367986--21368041 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
21367976 TTTAATCAAC
21367986 CAAACAAACACAAATTCAATCATTTAT
1 CAAACAAACACAAATTCAATCATTTAT
21368013 CAAACAAACACAAATTCAATCATTTAT
1 CAAACAAACACAAATTCAATCATTTAT
21368040 CA
1 CA
21368042 TTCATACTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.52, C:0.23, G:0.00, T:0.25
Consensus pattern (27 bp):
CAAACAAACACAAATTCAATCATTTAT
Found at i:21370551 original size:25 final size:25
Alignment explanation
Indices: 21370523--21370572 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
21370513 TAATTATTGG
21370523 TGATTGATGAAACCATATGCCCACA
1 TGATTGATGAAACCATATGCCCACA
21370548 TGATTGATGAAACCATATGCCCACA
1 TGATTGATGAAACCATATGCCCACA
21370573 CAAATGTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
TGATTGATGAAACCATATGCCCACA
Found at i:21376719 original size:27 final size:27
Alignment explanation
Indices: 21376678--21378065 Score: 1434
Period size: 27 Copynumber: 51.3 Consensus size: 27
21376668 AATGGGCCTC
* *
21376678 TAAAATTATCGAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21376705 TAAAATTACCAAAATACCCTCGATAGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21376732 TAAAATTACCGAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
21376759 TAAAATTACCAAAATACCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
*
21376786 TAAAATTACCGAAATACCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* *
21376813 TAAAATTA-TAGAAATACCC-CTGATCGG
1 TAAAATTACCA-AAATACCCTC-GATGGG
*
21376840 TAAAATTACCAAAAGACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
21376867 TAAAATTACCAAAATA-CCTCTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
** *
21376894 TAAAATTACTGAAATACCCTTGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21376921 TAAAATTACCAAAATACCTTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21376948 TAAAATTACTAAAATACCCCCAATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21376975 TCAAATTA-CAAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377001 TAAAATTACCAAAATACCCCCGATGTG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377028 TAAAATTATCGAAATACCCTCGATAGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21377055 TAAAATTACCAAAATACCCTTGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377082 TAAAATTACTAAAATACCCTCAAAGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377109 TAAAATTATCGAAATACCC-CTGATAGG
1 TAAAATTACCAAAATACCCTC-GATGGG
** *
21377136 TAAAATTACTGAAATACCC-CTAATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* * *
21377163 TACAATTATCAAAATACCC-CTAATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
**
21377190 TAAAATTACTGAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21377217 TAAAATTATCAAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377244 TAAAATTACCGAAATACCCTCGATTGG
1 TAAAATTACCAAAATACCCTCGATGGG
21377271 TAAAATTACCAAAATACCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* *
21377298 TAAAATTACCGAAATGCCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* *
21377325 TAAAATTA-CAGAAATACCCTTGATCGG
1 TAAAATTACCA-AAATACCCTCGATGGG
*** *
21377352 TAAAATTATTGAAAGACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
21377379 TAAAATTACCAAAATA-CCTCTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
** *
21377406 TAAAATTACTGAAATACCCTTGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * * *
21377433 TAAAATTATCGAAATACCATTGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377460 TAAAATTACTAAAATACCCCCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21377487 TCAAATTA-CAAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
21377513 TAAAATTACCAAAATACCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* * *
21377540 TAAAATTATCGAAATACCCTCGATAGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21377567 TAAAATTACAAAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * * *
21377594 TAAACTTACTAAAATACCCTCAAAGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377621 TAAAATTATCGAAATACCC-CTGATAGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* * *
21377648 TAAAATTACCGAAATACCCCCAATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377675 TAAAATTATCGAAATACCC-CTAATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
** *
21377702 TAAAATTACTGAAATACCCTCGATGTG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377729 TAAAATTATCGAAATACCCTCGATGGGTCGAGGG
1 TAAAATTACCAAAATACCCTCGA----T---GGG
*
21377763 TAAAATTACTAAAATA-CC-CGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
** *
21377788 TAAAATTACTGAAATACCCTCGATAGG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377815 TAAAATTATCGAAATACCC-CTGATGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
* * *
21377842 TAAAATTATCGAAATACCCTCGAAGGG
1 TAAAATTACCAAAATACCCTCGATGGG
** * *
21377869 TAAAATTACTGAAATACCTTTGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
** ** *
21377896 TAAAATTACTGAAATACCCTAAAAGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* *
21377923 TAAAATTACCAAAATACCTTCAATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21377950 TAAAATTACTAAAATATCGTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
*
21377977 TAAAATTACAAAAATACCCTCGATGGG
1 TAAAATTACCAAAATACCCTCGATGGG
* * *
21378004 TAAAATTACGAAAATACCC-CTAAAGGG
1 TAAAATTACCAAAATACCCTC-GATGGG
*
21378031 T-AAATTGACCGAAATACCCTCGATGGG
1 TAAAATT-ACCAAAATACCCTCGATGGG
21378058 TAAAATTA
1 TAAAATTA
21378066 TTGAAATACC
Statistics
Matches: 1155, Mismatches: 169, Indels: 74
0.83 0.12 0.05
Matches are distributed among these distances:
25 18 0.02
26 69 0.06
27 1027 0.89
28 20 0.02
31 1 0.00
32 3 0.00
33 2 0.00
34 15 0.01
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.25
Consensus pattern (27 bp):
TAAAATTACCAAAATACCCTCGATGGG
Found at i:21378286 original size:26 final size:26
Alignment explanation
Indices: 21378257--21378333 Score: 102
Period size: 26 Copynumber: 3.0 Consensus size: 26
21378247 TTGCCACAAA
* *
21378257 TACTGTTATTGGTAGCTTTGATGCGT
1 TACTGTTATTGGAAGCTTTGCTGCGT
*
21378283 TACTGATATTGGAAGCTCTT-CTGCGT
1 TACTGTTATTGGAAGCT-TTGCTGCGT
*
21378309 TACTGTTATTGGCAGCTTTGCTGCG
1 TACTGTTATTGGAAGCTTTGCTGCG
21378334 ATATTGATGT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
25 2 0.05
26 40 0.91
27 2 0.05
ACGTcount: A:0.16, C:0.17, G:0.26, T:0.42
Consensus pattern (26 bp):
TACTGTTATTGGAAGCTTTGCTGCGT
Found at i:21379593 original size:35 final size:35
Alignment explanation
Indices: 21379554--21379678 Score: 142
Period size: 35 Copynumber: 3.5 Consensus size: 35
21379544 TAGTCTTTGT
*
21379554 TTGGTGTGTTTTGGTTGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
**
21379589 TTGGTGTGTTTCGGAAGGACTAGCTCTTATGAGCA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
* * * * * * *
21379624 CTGGTGTGTTTCAGTTGGATTGGATCTGATGAGAA
1 TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
*
21379659 TCTGGTGTGTTTTGGTTGGA
1 T-TGGTGTGTTTCGGTTGGA
21379679 TTGACGATGT
Statistics
Matches: 74, Mismatches: 15, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
35 58 0.78
36 16 0.22
ACGTcount: A:0.16, C:0.10, G:0.34, T:0.40
Consensus pattern (35 bp):
TTGGTGTGTTTCGGTTGGACTAGCTCTTATGAGCA
Found at i:21383498 original size:25 final size:25
Alignment explanation
Indices: 21383469--21383517 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
21383459 TATAAAATAT
*
21383469 TAATTCAAT-AAATTGAAAATTTAAA
1 TAATTAAATAAAATTG-AAATTTAAA
21383494 TAATTAAATAAAATTGAAATTTAA
1 TAATTAAATAAAATTGAAATTTAA
21383518 GAGAAAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 16 0.73
26 6 0.27
ACGTcount: A:0.57, C:0.02, G:0.04, T:0.37
Consensus pattern (25 bp):
TAATTAAATAAAATTGAAATTTAAA
Found at i:21384225 original size:29 final size:30
Alignment explanation
Indices: 21384167--21384225 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
21384157 TGCCTTTGAA
* *
21384167 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
*
21384197 AATATTTACAAAAAG-GGCAACTAAATTTT
1 AATATTTACAAAAAGAGACAACTAAATTTT
21384226 GAAAATAGTT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
29 11 0.42
30 15 0.58
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACAACTAAATTTT
Found at i:21391166 original size:22 final size:22
Alignment explanation
Indices: 21391133--21391184 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
21391123 TATTTAACCC
21391133 AAATT-AAATTAAATTAGATTA-
1 AAATTAAAATT-AATTAGATTAT
*
21391154 AAATTAAAATTAATTATATTAT
1 AAATTAAAATTAATTAGATTAT
21391176 AAATTAAAA
1 AAATTAAAA
21391185 CACATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 14 0.50
22 14 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATTAAAATTAATTAGATTAT
Found at i:21391169 original size:16 final size:15
Alignment explanation
Indices: 21391134--21391182 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
21391124 ATTTAACCCA
21391134 AATTAAATT-AAATT
1 AATTAAATTAAAATT
21391148 AGATTAAAATTAAAATT
1 A-ATT-AAATTAAAATT
*
21391165 AATTATATTATAAATT
1 AATTAAATTA-AAATT
21391181 AA
1 AA
21391183 AACACATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 1 0.03
15 8 0.27
16 15 0.50
17 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
AATTAAATTAAAATT
Found at i:21391333 original size:11 final size:11
Alignment explanation
Indices: 21391317--21391356 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
21391307 AAAAATGATC
*
21391317 AAAATTAATAA
1 AAAATTAATAT
*
21391328 AAAATTATTAT
1 AAAATTAATAT
21391339 AAAATTAA-AT
1 AAAATTAATAT
21391349 AAAATTAA
1 AAAATTAA
21391357 ACATATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:21400980 original size:22 final size:22
Alignment explanation
Indices: 21400947--21400998 Score: 72
Period size: 21 Copynumber: 2.4 Consensus size: 22
21400937 TATTTAACCC
21400947 AAATT-AAATTAAATTAGATTA-
1 AAATTAAAATT-AATTAGATTAT
*
21400968 AAATTAAAATTAATTATATTAT
1 AAATTAAAATTAATTAGATTAT
21400990 AAATTAAAA
1 AAATTAAAA
21400999 CACATAATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
21 14 0.50
22 14 0.50
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (22 bp):
AAATTAAAATTAATTAGATTAT
Found at i:21400983 original size:16 final size:15
Alignment explanation
Indices: 21400948--21400996 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 15
21400938 ATTTAACCCA
21400948 AATTAAATT-AAATT
1 AATTAAATTAAAATT
21400962 AGATTAAAATTAAAATT
1 A-ATT-AAATTAAAATT
*
21400979 AATTATATTATAAATT
1 AATTAAATTA-AAATT
21400995 AA
1 AA
21400997 AACACATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
14 1 0.03
15 8 0.27
16 15 0.50
17 6 0.20
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (15 bp):
AATTAAATTAAAATT
Found at i:21401147 original size:11 final size:11
Alignment explanation
Indices: 21401131--21401170 Score: 55
Period size: 11 Copynumber: 3.7 Consensus size: 11
21401121 AAAAATGATC
*
21401131 AAAATTAATAA
1 AAAATTAATAT
*
21401142 AAAATTATTAT
1 AAAATTAATAT
21401153 AAAATTAA-AT
1 AAAATTAATAT
21401163 AAAATTAA
1 AAAATTAA
21401171 ACATATTAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
10 10 0.38
11 16 0.62
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.33
Consensus pattern (11 bp):
AAAATTAATAT
Found at i:21411193 original size:27 final size:27
Alignment explanation
Indices: 21411136--21411218 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 27
21411126 ACACTCCAGA
* *
21411136 AAAAAGAAGTCTTTGTGGCTATATATG
1 AAAAAGAAGTCTTTGTGGCGATCTATG
* *
21411163 AAAAGGAAGTCTTTGTGGCGATCTATT
1 AAAAAGAAGTCTTTGTGGCGATCTATG
* * *
21411190 AAAAAGAAGCCTTCGTGGAGATCTATG
1 AAAAAGAAGTCTTTGTGGCGATCTATG
21411217 AA
1 AA
21411219 GGGAATGCCC
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 47 1.00
ACGTcount: A:0.36, C:0.11, G:0.24, T:0.29
Consensus pattern (27 bp):
AAAAAGAAGTCTTTGTGGCGATCTATG
Found at i:21414550 original size:18 final size:17
Alignment explanation
Indices: 21414513--21414559 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
21414503 ACTTAATCAT
21414513 TTTAATA-TTAAATTAA
1 TTTAATATTTAAATTAA
*
21414529 TTTAATATTTAGATTAAA
1 TTTAATATTTAAATT-AA
21414547 TTTAATA-TTAAAT
1 TTTAATATTTAAAT
21414560 CTATTAAATT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
16 7 0.26
17 11 0.41
18 9 0.33
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (17 bp):
TTTAATATTTAAATTAA
Found at i:21414556 original size:12 final size:12
Alignment explanation
Indices: 21414513--21414559 Score: 55
Period size: 12 Copynumber: 4.1 Consensus size: 12
21414503 ACTTAATCAT
21414513 TTTAATATTAAA
1 TTTAATATTAAA
21414525 -TTAAT-TTAATA
1 TTTAATATTAA-A
*
21414536 TTT-AGATTAAA
1 TTTAATATTAAA
21414547 TTTAATATTAAA
1 TTTAATATTAAA
21414559 T
1 T
21414560 CTATTAAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
10 4 0.14
11 11 0.38
12 14 0.48
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (12 bp):
TTTAATATTAAA
Found at i:21414644 original size:20 final size:18
Alignment explanation
Indices: 21414594--21414645 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 18
21414584 CTACAAGATA
21414594 AATATTAAATTAA-ATTT
1 AATATTAAATTAATATTT
21414611 AATATTAAGA-TAATCAGTTT
1 AATATTAA-ATTAAT-A-TTT
21414631 AATATTAAATTAATA
1 AATATTAAATTAATA
21414646 AAATAGTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 11 0.37
18 1 0.03
19 3 0.10
20 15 0.50
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.42
Consensus pattern (18 bp):
AATATTAAATTAATATTT
Found at i:21415987 original size:11 final size:12
Alignment explanation
Indices: 21415957--21415989 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
21415947 GTCACAAGTG
21415957 AATTAATTCACA
1 AATTAATTCACA
*
21415969 AATGAATTCA-A
1 AATTAATTCACA
21415980 AATTAATTCA
1 AATTAATTCA
21415990 TCTTGGGTCC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.52, C:0.12, G:0.03, T:0.33
Consensus pattern (12 bp):
AATTAATTCACA
Found at i:21417108 original size:28 final size:28
Alignment explanation
Indices: 21417077--21417132 Score: 112
Period size: 28 Copynumber: 2.0 Consensus size: 28
21417067 CAGTAATAGT
21417077 ACAATGTGGGCCTTAGCCCAATACAGTA
1 ACAATGTGGGCCTTAGCCCAATACAGTA
21417105 ACAATGTGGGCCTTAGCCCAATACAGTA
1 ACAATGTGGGCCTTAGCCCAATACAGTA
21417133 TCGGTATAGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.32, C:0.25, G:0.21, T:0.21
Consensus pattern (28 bp):
ACAATGTGGGCCTTAGCCCAATACAGTA
Found at i:21417529 original size:27 final size:27
Alignment explanation
Indices: 21417496--21417826 Score: 367
Period size: 27 Copynumber: 12.3 Consensus size: 27
21417486 GGGTATAACA
* * *
21417496 GTCATTTTACCCTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
21417523 GTTATTTTACCCTATGGGGGTAATTTG
1 GTCATTTTACCCTATGGGGGTAATTCG
* * *
21417550 GTCATTTTACCTTGTGGGGGGAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
* **
21417577 ATCATTTTACCCTATGGGGGGTAATTTA
1 GTCATTTTACCCTAT-GGGGGTAATTCG
* * *
21417605 GTTAGTTTACCCTATGGGGGTAATTCA
1 GTCATTTTACCCTATGGGGGTAATTCG
* * *
21417632 ATCATGTTACCTTAT-GGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
*
21417658 GTCATTTTACCCTGTGGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
21417685 GTCATTTTACCCTATGAGGGTAATTGG
1 GTCATTTTACCCTATGGGGGTAATTCG
* * *
21417712 GTTATTTTACCCTGTAGGGGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
21417739 ATCATTTTACCCTATGGGGGTAATTTG
1 GTCATTTTACCCTATGGGGGTAATTCG
* *
21417766 GTCATTTTACCCTGTGGGAGTAATTCG
1 GTCATTTTACCCTATGGGGGTAATTCG
** * *
21417793 GTCATTTTACCCTGCGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTAATTCG
21417820 GTCATTT
1 GTCATTT
21417827 ATCGACCTCT
Statistics
Matches: 253, Mismatches: 49, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
26 21 0.08
27 211 0.83
28 21 0.08
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTAATTCG
Found at i:21417554 original size:54 final size:54
Alignment explanation
Indices: 21417496--21417826 Score: 412
Period size: 54 Copynumber: 6.1 Consensus size: 54
21417486 GGGTATAACA
* * * * * *
21417496 GTCATTTTACCCTATGAGGGTATTTTGGTTATTTTACCCTATGGGGGTAATTTG
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
* * *
21417550 GTCATTTTACCTTGTGGGGGGAATTCGATCATTTTACCCTATGGGGGGTAATTTA
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTAT-GGGGGTAATTTG
* * * * * * *
21417605 GTTAGTTTACCCTATGGGGGTAATTCAATCATGTTACCTTAT-GGGGTAATTCG
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
* * *
21417658 GTCATTTTACCCTGTGGGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTGG
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
* *
21417712 GTTATTTTACCCTGTAGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
* * ** *
21417766 GTCATTTTACCCTGTGGGAGTAATTCGGTCATTTTACCCTGCGGGGGTATTTTG
1 GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
21417820 GTCATTT
1 GTCATTT
21417827 ATCGACCTCT
Statistics
Matches: 235, Mismatches: 40, Indels: 4
0.84 0.14 0.01
Matches are distributed among these distances:
53 44 0.19
54 146 0.62
55 45 0.19
ACGTcount: A:0.19, C:0.15, G:0.26, T:0.40
Consensus pattern (54 bp):
GTCATTTTACCCTGTGGGGGTAATTCGATCATTTTACCCTATGGGGGTAATTTG
Found at i:21417813 original size:81 final size:81
Alignment explanation
Indices: 21417497--21417814 Score: 404
Period size: 81 Copynumber: 3.9 Consensus size: 81
21417487 GGTATAACAG
* * * * *
21417497 TCATTTTACCCTATGAGGGTATTTTGGTTATTTTACCCTATGGGGGTAATTTGGTCATTTTACCT
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTAATTCGGTCATTTTACCC
*
21417562 TGTGGGGGGAATTCGA
66 TGTGGGGGTAATTCGA
* * * ** *
21417578 TCATTTTACCCTATGGGGGGTAATTTAGTTAGTTTACCCTATGGGGGTAATTCAATCATGTTACC
1 TCATTTTACCCTAT-GGGGGTAATTTGGTCATTTTACCCTATGGGGGTAATTCGGTCATTTTACC
* * *
21417643 TTAT-GGGGTAATTCGG
65 CTGTGGGGGTAATTCGA
* * * * *
21417659 TCATTTTACCCTGTGGGGGTAATTCGGTCATTTTACCCTATGAGGGTAATTGGGTTATTTTACCC
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTAATTCGGTCATTTTACCC
*
21417724 TGTAGGGGTAATTCGA
66 TGTGGGGGTAATTCGA
* *
21417740 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTGTGGGAGTAATTCGGTCATTTTACCC
1 TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTAATTCGGTCATTTTACCC
*
21417805 TGCGGGGGTA
66 TGTGGGGGTA
21417815 TTTTGGTCAT
Statistics
Matches: 201, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
80 42 0.21
81 114 0.57
82 45 0.22
ACGTcount: A:0.19, C:0.16, G:0.26, T:0.39
Consensus pattern (81 bp):
TCATTTTACCCTATGGGGGTAATTTGGTCATTTTACCCTATGGGGGTAATTCGGTCATTTTACCC
TGTGGGGGTAATTCGA
Found at i:21418062 original size:19 final size:19
Alignment explanation
Indices: 21418038--21418086 Score: 82
Period size: 19 Copynumber: 2.6 Consensus size: 19
21418028 GTGTAGGGCC
*
21418038 CACGAGCCCATTGAGCCCA
1 CACGAGCCCATTGAACCCA
21418057 CACGAGCCCATTGAACCCA
1 CACGAGCCCATTGAACCCA
21418076 CACGA-CCCATT
1 CACGAGCCCATT
21418087 TCGGCCCAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.29, C:0.43, G:0.16, T:0.12
Consensus pattern (19 bp):
CACGAGCCCATTGAACCCA
Found at i:21421072 original size:60 final size:59
Alignment explanation
Indices: 21420998--21421127 Score: 161
Period size: 60 Copynumber: 2.2 Consensus size: 59
21420988 TTGATCGTAA
* ** * *
21420998 TATAAAAAGTTCAATAAATTTAGCTCTCAATGTTTACAAAATTTGTCATTTTACTTCAAAT
1 TATAAAAA--TCAATAAATTTAGCTATCAACATTTACAAAATGTATCATTTTACTTCAAAT
* * *
21421059 TCTTAAAAATCAATAAATTTAGCTATCAACATTTACAAAATGTATCATTTTAGTTCTAAT
1 T-ATAAAAATCAATAAATTTAGCTATCAACATTTACAAAATGTATCATTTTACTTCAAAT
21421119 TATAAAAAT
1 TATAAAAAT
21421128 TTCAAAAAAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
59 7 0.12
60 45 0.76
61 1 0.02
62 6 0.10
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.40
Consensus pattern (59 bp):
TATAAAAATCAATAAATTTAGCTATCAACATTTACAAAATGTATCATTTTACTTCAAAT
Found at i:21421840 original size:61 final size:61
Alignment explanation
Indices: 21421736--21421862 Score: 157
Period size: 61 Copynumber: 2.1 Consensus size: 61
21421726 CTTTTTTTAA
* *
21421736 TTTTTAGAATTAGAACTAAATTGATAAATTTTGCAAACGTTGAGAGCTAAATTTATAGAAC
1 TTTTTAGAATTAGAACTAAATTGACAAATTTTGCAAACATTGAGAGCTAAATTTATAGAAC
** * * * * *
21421797 TTTTTAGAATTCTAACTAAAATT-ACAAATTTTGTAAACATTGAGGGCTAAGTTTATTGAAT
1 TTTTTAGAATTAGAACT-AAATTGACAAATTTTGCAAACATTGAGAGCTAAATTTATAGAAC
21421858 TTTTT
1 TTTTT
21421863 TATATTTAGG
Statistics
Matches: 56, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
61 51 0.91
62 5 0.09
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (61 bp):
TTTTTAGAATTAGAACTAAATTGACAAATTTTGCAAACATTGAGAGCTAAATTTATAGAAC
Found at i:21424822 original size:18 final size:19
Alignment explanation
Indices: 21424801--21424843 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
21424791 ATTAAATGTA
*
21424801 AAAATGTAATTTTTAA-AT
1 AAAATGTAATTTTAAAGAT
*
21424819 AAAA-GTTATTTTAAAGAT
1 AAAATGTAATTTTAAAGAT
21424837 AAAATGT
1 AAAATGT
21424844 GAAATTGACA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 9 0.43
18 10 0.48
19 2 0.10
ACGTcount: A:0.51, C:0.00, G:0.09, T:0.40
Consensus pattern (19 bp):
AAAATGTAATTTTAAAGAT
Found at i:21425110 original size:19 final size:21
Alignment explanation
Indices: 21425075--21425122 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
21425065 ATGGGGGTAA
*
21425075 AGGGTGAGAAGTAAAA-GTTT
1 AGGGGGAGAAGTAAAAGGTTT
21425095 AGGGGGAGAA-TAAAAGGTTT
1 AGGGGGAGAAGTAAAAGGTTT
*
21425115 TGGGGGAG
1 AGGGGGAG
21425123 TAAAATTTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 5 0.20
20 20 0.80
ACGTcount: A:0.35, C:0.00, G:0.44, T:0.21
Consensus pattern (21 bp):
AGGGGGAGAAGTAAAAGGTTT
Found at i:21425407 original size:18 final size:18
Alignment explanation
Indices: 21425384--21425418 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
21425374 AATCAAGTTG
*
21425384 ACTCGAATAACTCGATTA
1 ACTCGAACAACTCGATTA
21425402 ACTCGAACAACTCGATT
1 ACTCGAACAACTCGATT
21425419 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.37, C:0.26, G:0.11, T:0.26
Consensus pattern (18 bp):
ACTCGAACAACTCGATTA
Found at i:21426424 original size:21 final size:21
Alignment explanation
Indices: 21426395--21426437 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
21426385 TCGAAAGTTG
*
21426395 AACAAAAGCTTGTAAGAGCTT
1 AACAAAAGCTCGTAAGAGCTT
*
21426416 AACAGAAGCTCGTAAGAGCTT
1 AACAAAAGCTCGTAAGAGCTT
21426437 A
1 A
21426438 TCCACCGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.42, C:0.16, G:0.21, T:0.21
Consensus pattern (21 bp):
AACAAAAGCTCGTAAGAGCTT
Found at i:21430213 original size:27 final size:28
Alignment explanation
Indices: 21430161--21430232 Score: 121
Period size: 27 Copynumber: 2.6 Consensus size: 28
21430151 AAAAATAAAA
21430161 ATTTACCAAAATAT-TATAACTTTTTTTT
1 ATTTACCAAAATATATATAAC-TTTTTTT
21430189 ATTTACCAAAATATATATAA-TTTTTTT
1 ATTTACCAAAATATATATAACTTTTTTT
21430216 ATTTACCAAAATATATA
1 ATTTACCAAAATATATA
21430233 AAAAAACAAA
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
27 24 0.56
28 14 0.33
29 5 0.12
ACGTcount: A:0.42, C:0.10, G:0.00, T:0.49
Consensus pattern (28 bp):
ATTTACCAAAATATATATAACTTTTTTT
Found at i:21430331 original size:27 final size:27
Alignment explanation
Indices: 21430301--21430377 Score: 136
Period size: 27 Copynumber: 2.9 Consensus size: 27
21430291 ACGCCAATTG
*
21430301 CATTGGCGGCACCAAAGGTGCCAAAAC
1 CATTGGCGGCACCAATGGTGCCAAAAC
*
21430328 CATTGGCGGCACCAATGGTGCCAATAC
1 CATTGGCGGCACCAATGGTGCCAAAAC
21430355 CATTGGCGGCACCAATGGTGCCA
1 CATTGGCGGCACCAATGGTGCCA
21430378 TATTGTTTGG
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.27, C:0.30, G:0.27, T:0.16
Consensus pattern (27 bp):
CATTGGCGGCACCAATGGTGCCAAAAC
Found at i:21430567 original size:19 final size:21
Alignment explanation
Indices: 21430529--21430567 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 21
21430519 ATTTTTTGCT
*
21430529 TATATTGTTGTTATTATTTTG
1 TATATTGTTGTTAATATTTTG
21430550 TATATT-TTG-TAATATTTT
1 TATATTGTTGTTAATATTTT
21430568 TTGTTTTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 8 0.47
20 3 0.18
21 6 0.35
ACGTcount: A:0.23, C:0.00, G:0.10, T:0.67
Consensus pattern (21 bp):
TATATTGTTGTTAATATTTTG
Found at i:21430643 original size:3 final size:3
Alignment explanation
Indices: 21430637--21430677 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
21430627 ATTATTATTA
21430637 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TTG TT
21430678 AGTATTAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (3 bp):
TTG
Found at i:21437182 original size:36 final size:37
Alignment explanation
Indices: 21437105--21437272 Score: 160
Period size: 39 Copynumber: 4.4 Consensus size: 37
21437095 ATAAATTTAC
* * * *
21437105 CTTTTTTTCTTTTTTTTCTTCCTTCCCTCTTCTTCTTCTT
1 CTTTTTTT-TTTCTCTTC-TCCTTTCCTCTTCTT-TCCTT
*
21437145 C-TTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTT
1 CTTTTTTTTTTCTCTTCTCCTTTCCTCTTCTTTCCTT
* *
21437181 CTTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTTCTTCTTCTTT
1 C--TTT-TTT-TTTTCTCTTCTCCTTTCCTCTTC-T-TTCCTT
* *
21437224 CTTTTTTTTTTCTCTCCTCCTTTCCTTTTCTTTCC-T
1 CTTTTTTTTTTCTCTTCTCCTTTCCTCTTCTTTCCTT
21437260 CTTTTTTTTTTCT
1 CTTTTTTTTTTCT
21437273 TTTTTTCTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
36 19 0.17
37 16 0.15
38 8 0.07
39 28 0.26
40 7 0.06
41 24 0.22
42 1 0.01
43 6 0.06
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (37 bp):
CTTTTTTTTTTCTCTTCTCCTTTCCTCTTCTTTCCTT
Found at i:21437255 original size:33 final size:36
Alignment explanation
Indices: 21437105--21437269 Score: 130
Period size: 37 Copynumber: 4.4 Consensus size: 36
21437095 ATAAATTTAC
21437105 CTTT-TTTTCTTTTTT-TTCTTCCTTCCCTCTT-CTTCTT
1 CTTTCTTTT-TTTTTTCTTC-TCCTT-CCT-TTCCTTCTT
*
21437142 C-TTCTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTCCTT
1 CTTTCTTTTTTTTT-TCTTCTCC-TTCC-TTTCCTT-CTT
*
21437181 CTTTTTCTTTCTTTTTTCTTCTCCTTTCCTCTT-CTTCTT
1 C--TTTCTTTTTTTTTTCTTCTCC-TTCCT-TTCCTTCTT
21437220 CTTTCTTTTTTTTTTC-TCTCC-TCCTTTCCTT-TT
1 CTTTCTTTTTTTTTTCTTCTCCTTCCTTTCCTTCTT
21437253 CTTTCCTCTTTTTTTTT
1 CTTT-CT-TTTTTTTTT
21437270 TCTTTTTTTC
Statistics
Matches: 110, Mismatches: 4, Indels: 30
0.76 0.03 0.21
Matches are distributed among these distances:
33 8 0.07
34 9 0.08
35 9 0.08
36 12 0.11
37 27 0.25
38 8 0.07
39 8 0.07
40 3 0.03
41 15 0.14
42 11 0.10
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (36 bp):
CTTTCTTTTTTTTTTCTTCTCCTTCCTTTCCTTCTT
Found at i:21437266 original size:80 final size:77
Alignment explanation
Indices: 21437106--21437288 Score: 269
Period size: 80 Copynumber: 2.3 Consensus size: 77
21437096 TAAATTTACC
*
21437106 TTTTTTTCTTTTTTTTCTTCCTTCCCTCTTCTTCTTCTTCTTTTTTTTTCTCTTCTCCTTTCCTT
1 TTTTTTTCTTTTTTTTCTTCCTTCCCTCTTCTTCTTCTTCTTTTTTTTTCTCTCCTCCTTTCCTT
21437171 TTCTTTCCTTCT
66 TTCTTTCCTTCT
*
21437183 TTTTCTTTCTTTTTTCTTC-TCCTTTCCTCTTCTTCTTCTTTCTTTTTTTTTTCTCTCCTCCTTT
1 TTTT-TTTCTTTTTT-TTCTTCCTTCCCTCTTCTTCTTC-TTC-TTTTTTTTTCTCTCCTCCTTT
*
21437247 CCTTTTCTTTCCTCTTT
62 CCTTTTCTTTCCT-TCT
21437264 TTTTTTTCTTTTTTTCTCATTCCTT
1 TTTTTTTCTTTTTTT-TC-TTCCTT
21437289 TCTTTATTCA
Statistics
Matches: 95, Mismatches: 3, Indels: 11
0.87 0.03 0.10
Matches are distributed among these distances:
77 4 0.04
78 28 0.29
79 7 0.07
80 45 0.47
81 6 0.06
82 5 0.05
ACGTcount: A:0.01, C:0.29, G:0.00, T:0.70
Consensus pattern (77 bp):
TTTTTTTCTTTTTTTTCTTCCTTCCCTCTTCTTCTTCTTCTTTTTTTTTCTCTCCTCCTTTCCTT
TTCTTTCCTTCT
Found at i:21437274 original size:18 final size:18
Alignment explanation
Indices: 21437223--21437274 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
21437213 TCTTCTTCTT
*
21437223 TCTTTTTTTTTTCTCTCC
1 TCTTTTTTTTTTCTTTCC
* **
21437241 TCCTTTCCTTTTCTTTCC
1 TCTTTTTTTTTTCTTTCC
21437259 TCTTTTTTTTTTCTTT
1 TCTTTTTTTTTTCTTT
21437275 TTTTCTCATT
Statistics
Matches: 27, Mismatches: 7, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
18 27 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (18 bp):
TCTTTTTTTTTTCTTTCC
Found at i:21437449 original size:27 final size:27
Alignment explanation
Indices: 21437376--21437453 Score: 129
Period size: 27 Copynumber: 2.9 Consensus size: 27
21437366 ATAACACGAG
**
21437376 TGGTGCCGCCAACAGGGAACCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
21437403 TGGTGCCGCCAACAGGGTTCCCTTGTT
1 TGGTGCCGCCAACAGGGTTCCCTTGTT
*
21437430 TGGTGCCGCCAACAGTGTTCCCTT
1 TGGTGCCGCCAACAGGGTTCCCTT
21437454 CACCCAGGGA
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.14, C:0.31, G:0.28, T:0.27
Consensus pattern (27 bp):
TGGTGCCGCCAACAGGGTTCCCTTGTT
Found at i:21437541 original size:27 final size:28
Alignment explanation
Indices: 21437511--21437579 Score: 124
Period size: 27 Copynumber: 2.5 Consensus size: 28
21437501 TTGTTTTTTT
21437511 TATATTTTGGTAAATAAAAAAA-TTATA
1 TATATTTTGGTAAATAAAAAAAGTTATA
21437538 TATATTTTGGTAAATAAAAAAAGTTATA
1 TATATTTTGGTAAATAAAAAAAGTTATA
21437566 -ATATTTTGGTAAAT
1 TATATTTTGGTAAAT
21437580 TTTTATTTTT
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 36 0.88
28 5 0.12
ACGTcount: A:0.48, C:0.00, G:0.10, T:0.42
Consensus pattern (28 bp):
TATATTTTGGTAAATAAAAAAAGTTATA
Found at i:21442165 original size:73 final size:73
Alignment explanation
Indices: 21442041--21442193 Score: 261
Period size: 73 Copynumber: 2.1 Consensus size: 73
21442031 ATCACATTTT
*
21442041 AATGAATGAAATACATGCATGAGTTTAATTGAAAGCATGAACGATGAAGGTATAGACATCATAAA
1 AATG-ATGAAATACATGCATGAGTTGAATTGAAAGCATGAACGATGAAGGTATAGACATCATAAA
21442106 CATGAATCA
65 CATGAATCA
* *
21442115 AATGATGAAATACGTGCATGAGTTGAATTGAAAGCATGAACGATTAAGGTATAGACATCATAAAC
1 AATGATGAAATACATGCATGAGTTGAATTGAAAGCATGAACGATGAAGGTATAGACATCATAAAC
21442180 ATGAATCA
66 ATGAATCA
*
21442188 GATGAT
1 AATGAT
21442194 CTTTGTCAAA
Statistics
Matches: 75, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
73 71 0.95
74 4 0.05
ACGTcount: A:0.44, C:0.10, G:0.20, T:0.25
Consensus pattern (73 bp):
AATGATGAAATACATGCATGAGTTGAATTGAAAGCATGAACGATGAAGGTATAGACATCATAAAC
ATGAATCA
Found at i:21442524 original size:18 final size:16
Alignment explanation
Indices: 21442485--21442516 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
21442475 AGGAAATAAC
21442485 AAGTGAAGAATGAA-G
1 AAGTGAAGAATGAATG
21442500 AAG-GAAGAATGAATG
1 AAGTGAAGAATGAATG
21442515 AA
1 AA
21442517 TGATGAAGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 10 0.62
15 6 0.38
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.12
Consensus pattern (16 bp):
AAGTGAAGAATGAATG
Found at i:21448571 original size:32 final size:33
Alignment explanation
Indices: 21448509--21448574 Score: 82
Period size: 32 Copynumber: 2.0 Consensus size: 33
21448499 AGCTCAATGG
* *
21448509 TCTTGTGGTGTGAAAACTAGAATAGAAATAGCC
1 TCTTGTGGTGTGAAAACCAGAACAGAAATAGCC
*
21448542 TCTTGT-GTGTGAACAACCAGAACCG-AATAGCC
1 TCTTGTGGTGTGAA-AACCAGAACAGAAATAGCC
21448574 T
1 T
21448575 TAGCATGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
32 15 0.52
33 14 0.48
ACGTcount: A:0.33, C:0.18, G:0.23, T:0.26
Consensus pattern (33 bp):
TCTTGTGGTGTGAAAACCAGAACAGAAATAGCC
Found at i:21449058 original size:15 final size:15
Alignment explanation
Indices: 21449035--21449064 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21449025 CCAGATTTTA
21449035 TTAAATTAATTAATT
1 TTAAATTAATTAATT
*
21449050 TTAAGTTAATTAATT
1 TTAAATTAATTAATT
21449065 AATTTAACTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
TTAAATTAATTAATT
Found at i:21452123 original size:21 final size:20
Alignment explanation
Indices: 21452099--21452139 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
21452089 CGATTTTACC
* *
21452099 TCACTTTTTATTTTTGTTTTT
1 TCACTCTTT-TTTTTCTTTTT
21452120 TCACTCTTTTTTTTCTTTTT
1 TCACTCTTTTTTTTCTTTTT
21452140 CTATCTTTTC
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.07, C:0.15, G:0.02, T:0.76
Consensus pattern (20 bp):
TCACTCTTTTTTTTCTTTTT
Found at i:21455129 original size:10 final size:11
Alignment explanation
Indices: 21455108--21455141 Score: 61
Period size: 11 Copynumber: 3.2 Consensus size: 11
21455098 AGCTAGCAAT
21455108 TGAGCTTTAAA
1 TGAGCTTTAAA
21455119 TGAGC-TTAAA
1 TGAGCTTTAAA
21455129 TGAGCTTTAAA
1 TGAGCTTTAAA
21455140 TG
1 TG
21455142 TGCTGCTTGG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 10 0.45
11 12 0.55
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (11 bp):
TGAGCTTTAAA
Found at i:21461168 original size:84 final size:84
Alignment explanation
Indices: 21461060--21461347 Score: 421
Period size: 84 Copynumber: 3.5 Consensus size: 84
21461050 CAAAGGATCC
*
21461060 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATAAGGGGAATCAGCACATAGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
*
21461125 CCTTTCGCAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * * * *
21461144 TGGTGGAATCAACACTTAGTAACCACCTTATAATCAATCATACGGGGAATCAGCACATAACAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
21461209 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
* * *
21461228 CGAT-G-A--A--A-TCA-CAACCACCTTATAATCAATGATACGGGGAATCAGCACATGGCAACC
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
21461285 CCTTTCACAATCAAGGATA
66 CCTTTCACAATCAAGGATA
*
21461304 CGGTGGAATCAGCACTTACCAACCACCTTATAATCAATGATACG
1 CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACG
21461348 AGTTCACATA
Statistics
Matches: 180, Mismatches: 16, Indels: 16
0.85 0.08 0.08
Matches are distributed among these distances:
76 64 0.36
77 3 0.02
78 2 0.01
80 2 0.01
82 2 0.01
83 3 0.02
84 104 0.58
ACGTcount: A:0.37, C:0.26, G:0.16, T:0.21
Consensus pattern (84 bp):
CGGTGGAATCAGCACTTAGCAACCACCTTATAATCAATGATACGGGGAATCAGCACATAGCAACC
CCTTTCACAATCAAGGATA
Found at i:21461290 original size:76 final size:76
Alignment explanation
Indices: 21461164--21461314 Score: 257
Period size: 76 Copynumber: 2.0 Consensus size: 76
21461154 AACACTTAGT
21461164 AACCACCTTATAATCAATCATACGGGGAATCAGCACATAACAACCCCTTTCACAATCAAGGATAC
1 AACCACCTTATAATCAATCATACGGGGAATCAGCACATAACAACCCCTTTCACAATCAAGGATAC
21461229 GATGAAATCAC
66 GATGAAATCAC
* **
21461240 AACCACCTTATAATCAATGATACGGGGAATCAGCACATGGCAACCCCTTTCACAATCAAGGATAC
1 AACCACCTTATAATCAATCATACGGGGAATCAGCACATAACAACCCCTTTCACAATCAAGGATAC
* *
21461305 GGTGGAATCA
66 GATGAAATCA
21461315 GCACTTACCA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
76 70 1.00
ACGTcount: A:0.38, C:0.26, G:0.15, T:0.20
Consensus pattern (76 bp):
AACCACCTTATAATCAATCATACGGGGAATCAGCACATAACAACCCCTTTCACAATCAAGGATAC
GATGAAATCAC
Found at i:21461327 original size:43 final size:43
Alignment explanation
Indices: 21461239--21461332 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
21461229 GATGAAATCA
* * **
21461239 CAACCACC-TT-ATAATCAATGATACGGGGAATCAGCACATGG
1 CAACCACCTTTCACAATCAAGGATACGGGGAATCAGCACATAC
*
21461280 CAACC-CCTTTCACAATCAAGGATACGGTGGAATCAGCACTTAC
1 CAACCACCTTTCACAATCAAGGATACGG-GGAATCAGCACATAC
21461323 CAACCACCTT
1 CAACCACCTT
21461333 ATAATCAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
40 2 0.05
41 7 0.16
42 14 0.32
43 17 0.39
44 4 0.09
ACGTcount: A:0.34, C:0.30, G:0.16, T:0.20
Consensus pattern (43 bp):
CAACCACCTTTCACAATCAAGGATACGGGGAATCAGCACATAC
Done.