Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 66 of 163
Found at i:21818758 original size:20 final size:20
Alignment explanation
Indices: 21818720--21818757 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
21818710 CCATGTATTT
*
21818720 CATAAAATTTATAATTTTTC
1 CATAAAATTTACAATTTTTC
*
21818740 CATAAATTTTAC-ATTTTT
1 CATAAAATTTACAATTTTT
21818758 TTCAATTTAG
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.53
Consensus pattern (20 bp):
CATAAAATTTACAATTTTTC
Found at i:21819133 original size:31 final size:30
Alignment explanation
Indices: 21819097--21819158 Score: 74
Period size: 31 Copynumber: 2.0 Consensus size: 30
21819087 ATTTTTAATT
*
21819097 AATTTA-TCATCTTT-TATTATTTCATCTTTCC
1 AATTTATTCAT-TTTCT-TTATTTAAT-TTTCC
21819128 AATTTATTCATTTTCTTTATTTAATTTTCC
1 AATTTATTCATTTTCTTTATTTAATTTTCC
21819158 A
1 A
21819159 TTGATGAATC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 6 0.21
31 17 0.61
32 5 0.18
ACGTcount: A:0.24, C:0.16, G:0.00, T:0.60
Consensus pattern (30 bp):
AATTTATTCATTTTCTTTATTTAATTTTCC
Found at i:21822360 original size:27 final size:27
Alignment explanation
Indices: 21822306--21822396 Score: 123
Period size: 27 Copynumber: 3.4 Consensus size: 27
21822296 GCGATCCAAT
* * *
21822306 ATCGGGAAGCTC-TG-AAGAGCCATGA
1 ATCGGGAAGCTCATGAAAAAGCCTTTA
*
21822331 ATCGGAAAGCTCATGAAAAAGCCTTTA
1 ATCGGGAAGCTCATGAAAAAGCCTTTA
*
21822358 ATCGGGAAGCTCATGAAATAGCCTTTA
1 ATCGGGAAGCTCATGAAAAAGCCTTTA
21822385 ATCGGGAAGCTC
1 ATCGGGAAGCTC
21822397 CGGAGAGCCA
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
25 11 0.19
26 2 0.03
27 45 0.78
ACGTcount: A:0.34, C:0.20, G:0.25, T:0.21
Consensus pattern (27 bp):
ATCGGGAAGCTCATGAAAAAGCCTTTA
Found at i:21826592 original size:13 final size:13
Alignment explanation
Indices: 21826576--21826628 Score: 72
Period size: 13 Copynumber: 4.1 Consensus size: 13
21826566 TTTAAACCAA
21826576 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
*
21826589 ACTTTTCCACAA-C
1 ACTTTT-CAAAAGC
*
21826602 ACTTTTTAAAAGC
1 ACTTTTCAAAAGC
21826615 ACTTTTCAAAAGC
1 ACTTTTCAAAAGC
21826628 A
1 A
21826629 ATGAAGAACT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
12 3 0.09
13 27 0.79
14 4 0.12
ACGTcount: A:0.38, C:0.25, G:0.06, T:0.32
Consensus pattern (13 bp):
ACTTTTCAAAAGC
Found at i:21826594 original size:26 final size:26
Alignment explanation
Indices: 21826565--21826620 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
21826555 AACACTCAAA
21826565 TTTTAAACCAA-ACTTTTCAAAAGCAC
1 TTTTAAA-CAACACTTTTCAAAAGCAC
** *
21826591 TTTTCCACAACACTTTTTAAAAGCAC
1 TTTTAAACAACACTTTTCAAAAGCAC
21826617 TTTT
1 TTTT
21826621 CAAAAGCAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.36, C:0.23, G:0.04, T:0.38
Consensus pattern (26 bp):
TTTTAAACAACACTTTTCAAAAGCAC
Found at i:21831123 original size:67 final size:66
Alignment explanation
Indices: 21831016--21831159 Score: 225
Period size: 67 Copynumber: 2.2 Consensus size: 66
21831006 TGGCCTTGCC
* * *
21831016 ATGGTCTTACATTTGTAGTGCCATAACCTAGTTATGGTCTTATCATCAGAATGCCATAGCCCAGC
1 ATGGTCTTACATTTGTAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAGC
21831081 T
66 T
* *
21831082 ATGGTCTTACATTTTGTATTGTCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAG
1 ATGGTCTTACA-TTTGTAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAG
21831147 CT
65 CT
*
21831149 GTGGTCTTACA
1 ATGGTCTTACA
21831160 CATGTATCTA
Statistics
Matches: 71, Mismatches: 6, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
66 11 0.15
67 60 0.85
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (66 bp):
ATGGTCTTACATTTGTAGTGCCATAACCCAATTATGGTCTTATCATCAAAATGCCATAGCCCAGC
T
Found at i:21831124 original size:34 final size:33
Alignment explanation
Indices: 21831016--21831159 Score: 112
Period size: 33 Copynumber: 4.3 Consensus size: 33
21831006 TGGCCTTGCC
* *
21831016 ATGGTCTTACATTTGTAGTGCCATAACCTAGTT
1 ATGGTCTTACATTTGTAATGCCATAACCCAGTT
** * *
21831049 ATGGTCTTATCATCAG-AATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTTGTAATGCCATAACCCAGTT
* * *
21831082 ATGGTCTTACATTTTGTATTGTCATAACCCAATT
1 ATGGTCTTACA-TTTGTAATGCCATAACCCAGTT
*** * *
21831116 ATGGTCTTATCA-TCAAAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTTGTAATGCCATAACCCAGTT
*
21831149 GTGGTCTTACA
1 ATGGTCTTACA
21831160 CATGTATCTA
Statistics
Matches: 85, Mismatches: 22, Indels: 9
0.73 0.19 0.08
Matches are distributed among these distances:
32 4 0.05
33 54 0.64
34 25 0.29
35 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTTGTAATGCCATAACCCAGTT
Found at i:21831270 original size:33 final size:33
Alignment explanation
Indices: 21831016--21831297 Score: 111
Period size: 33 Copynumber: 8.3 Consensus size: 33
21831006 TGGCCTTGCC
** * * * *
21831016 ATGGTCTTACATTTGTAGTGCCATAACCTAGTT
1 ATGGTCTTACATTTAAAATGCCATAGCCCAGCT
* *
21831049 ATGGTCTTATCA-TCAGAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTTAAAATGCCATAGCCCAGCT
** * * * **
21831082 ATGGTCTTACATTTTGTATTGTCATAACCCAATT
1 ATGGTCTTACA-TTTAAAATGCCATAGCCCAGCT
*
21831116 ATGGTCTTATCA-TCAAAATGCCATAGCCCAGCT
1 ATGGTCTTA-CATTTAAAATGCCATAGCCCAGCT
* * * * * * *
21831149 GTGGTCTTACACATGTATCTATATTGCCATGGTCCAACC
1 ATGGTCTT--ACA--T-T-TAAAATGCCATAGCCCAGCT
* * ** * * *
21831188 ATGGTCTTACGTTCAAGGTGCCATAACTCAGTT
1 ATGGTCTTACATTTAAAATGCCATAGCCCAGCT
* *
21831221 ATGGTCTTTTCA-TTAAAATGTCATAGCCCAGCT
1 ATGGTC-TTACATTTAAAATGCCATAGCCCAGCT
* * * *
21831254 ATGGTCTTACATTTAAACATTGCTATGGTCCAGCC
1 ATGGTCTTACATTTAAA-A-TGCCATAGCCCAGCT
21831289 ATGGTCTTA
1 ATGGTCTTA
21831298 TTTTTCAATT
Statistics
Matches: 175, Mismatches: 59, Indels: 28
0.67 0.23 0.11
Matches are distributed among these distances:
32 6 0.03
33 92 0.53
34 31 0.18
35 23 0.13
37 2 0.01
38 1 0.01
39 20 0.11
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.35
Consensus pattern (33 bp):
ATGGTCTTACATTTAAAATGCCATAGCCCAGCT
Found at i:21833155 original size:15 final size:15
Alignment explanation
Indices: 21833135--21833164 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
21833125 TTCATCTAAT
21833135 ATTATAACTATTCAA
1 ATTATAACTATTCAA
21833150 ATTATAACTATTCAA
1 ATTATAACTATTCAA
21833165 GTAATATTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.13, G:0.00, T:0.40
Consensus pattern (15 bp):
ATTATAACTATTCAA
Found at i:21833459 original size:16 final size:18
Alignment explanation
Indices: 21833433--21833465 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
21833423 TTTACATTTG
21833433 TTACAATATT-AATTTAT
1 TTACAATATTAAATTTAT
21833450 TTACAA-ATTAAATTTA
1 TTACAATATTAAATTTA
21833466 CTATTGTTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 3 0.20
17 12 0.80
ACGTcount: A:0.45, C:0.06, G:0.00, T:0.48
Consensus pattern (18 bp):
TTACAATATTAAATTTAT
Found at i:21838175 original size:20 final size:20
Alignment explanation
Indices: 21838150--21838188 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
21838140 CGTAAAATGA
*
21838150 TTTCTGGAAAATGTTTTACT
1 TTTCTGGAAAATGATTTACT
*
21838170 TTTCTGTAAAATGATTTAC
1 TTTCTGGAAAATGATTTAC
21838189 AGAAAATATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.10, G:0.13, T:0.49
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:21838194 original size:34 final size:33
Alignment explanation
Indices: 21838136--21838200 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
21838126 AGTAAAATAT
* *
21838136 TTTTCGTAAAATGATTTCTGGAAAATGTTTTAC
1 TTTTCGTAAAATGATTTCTAGAAAATATTTTAC
21838169 TTTTCTGTAAAATGATTTAC-AGAAAATATTTT
1 TTTTC-GTAAAATGATTT-CTAGAAAATATTTT
21838201 CTAGTATTTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 5 0.18
34 22 0.79
35 1 0.04
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.46
Consensus pattern (33 bp):
TTTTCGTAAAATGATTTCTAGAAAATATTTTAC
Found at i:21849976 original size:45 final size:45
Alignment explanation
Indices: 21849921--21850133 Score: 257
Period size: 45 Copynumber: 4.7 Consensus size: 45
21849911 CCAGAAACGT
* * * *
21849921 GTAAGACCATGACTAAAAGACGTTTTGTCATCACAATTCTATCGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGA
* * * *
21849966 GTAAAACCATGACTGAAAGATGTTATGGCATCATGATTCTATTGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGA
** * *
21850011 GTAAGACTGTGACTCAAAGACGTTATGGCATCACGATTCTATCAA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGA
* * * *
21850056 ATAAGACCATGATTGAAAGACGTTATGGCATCACGATCCTATTGA
1 GTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGA
*
21850101 GTAAGACCAT-AGCTGAAAGACGCTATGGCATCA
1 GTAAGACCATGA-CTGAAAGACGTTATGGCATCA
21850134 TGAATCAAAG
Statistics
Matches: 140, Mismatches: 27, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
44 1 0.01
45 139 0.99
ACGTcount: A:0.35, C:0.18, G:0.20, T:0.27
Consensus pattern (45 bp):
GTAAGACCATGACTGAAAGACGTTATGGCATCACGATTCTATCGA
Found at i:21850148 original size:90 final size:90
Alignment explanation
Indices: 21849921--21850175 Score: 255
Period size: 90 Copynumber: 2.8 Consensus size: 90
21849911 CCAGAAACGT
* * * * * * * * * *
21849921 GTAAGACCATGACTAAAAGACGTTTTGTCATCAC-AATTCTATCGAGTAAAACCATGACTGAAAG
1 GTAAGACCATGACTCAAAGACGCTATGGCATCACGAA-TCAAACAAATAAGACCATGATTGAAAG
* * *
21849985 ATGTTATGGCATCATGATTCTATTGA
65 ACGTTATGGCATCACGATCCTATTGA
** * * * *
21850011 GTAAGACTGTGACTCAAAGACGTTATGGCATCACGATTCTATCAAATAAGACCATGATTGAAAGA
1 GTAAGACCATGACTCAAAGACGCTATGGCATCACGAATCAAACAAATAAGACCATGATTGAAAGA
21850076 CGTTATGGCATCACGATCCTATTGA
66 CGTTATGGCATCACGATCCTATTGA
* * *
21850101 GTAAGACCAT-AGCTGAAAGACGCTATGGCATCATGAATCAAAGAAATAAGACCAT-AGTTGAAA
1 GTAAGACCATGA-CTCAAAGACGCTATGGCATCACGAATCAAACAAATAAGACCATGA-TTGAAA
*
21850164 GACATTATGGCA
64 GACGTTATGGCA
21850176 AGAAGATGAA
Statistics
Matches: 139, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
89 2 0.01
90 136 0.98
91 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.20, T:0.26
Consensus pattern (90 bp):
GTAAGACCATGACTCAAAGACGCTATGGCATCACGAATCAAACAAATAAGACCATGATTGAAAGA
CGTTATGGCATCACGATCCTATTGA
Found at i:21850257 original size:45 final size:44
Alignment explanation
Indices: 21850102--21850268 Score: 156
Period size: 45 Copynumber: 3.7 Consensus size: 44
21850092 TCCTATTGAG
* * * *
21850102 TAAGACCATAGCTGAAAGACGCTATGGCATCATGAATC-AAAGAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAG-A-CGAAAAAAA
* ** *
21850147 TAAGACCATAGTTGAAAGACATTATGGCAAGAAGATGAAAAAAAAGAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAGACG---AAAAA-AA
* *
21850195 TAAGACCATGGTTGAAAGACACTATGGCATCAAGACGAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCATCAAGACGA-AAAAAA
* *
21850240 TAAAACCATAGTTGAAAGACACCATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
21850269 CAGTCCCATC
Statistics
Matches: 99, Mismatches: 17, Indels: 12
0.77 0.13 0.09
Matches are distributed among these distances:
44 1 0.01
45 57 0.58
46 3 0.03
47 4 0.04
48 34 0.34
ACGTcount: A:0.47, C:0.15, G:0.20, T:0.17
Consensus pattern (44 bp):
TAAGACCATAGTTGAAAGACACTATGGCATCAAGACGAAAAAAA
Found at i:21853430 original size:37 final size:37
Alignment explanation
Indices: 21853372--21853472 Score: 95
Period size: 37 Copynumber: 2.7 Consensus size: 37
21853362 AAAAATAGTA
*
21853372 TTATTTTAATAGTTTAATATTAGATTTAAT-TTAATAC
1 TTATCTTAATAGTTTAATATTA-ATTTAATATTAATAC
*
21853409 TTATCTTAATAGTATT-TTATTAATTTAATATTAAAGTGA-
1 TTATCTTAATAGT-TTAATATTAATTTAATATT-AA-T-AC
*
21853448 TTATCTTAATA-TTAAAT-TTAATTTA
1 TTATCTTAATAGTTTAATATTAATTTA
21853473 GATAAACATT
Statistics
Matches: 54, Mismatches: 4, Indels: 12
0.77 0.06 0.17
Matches are distributed among these distances:
36 7 0.13
37 28 0.52
38 6 0.11
39 12 0.22
40 1 0.02
ACGTcount: A:0.39, C:0.03, G:0.05, T:0.53
Consensus pattern (37 bp):
TTATCTTAATAGTTTAATATTAATTTAATATTAATAC
Found at i:21857874 original size:43 final size:44
Alignment explanation
Indices: 21857793--21857929 Score: 131
Period size: 43 Copynumber: 3.2 Consensus size: 44
21857783 CACTAACTTG
** * * *
21857793 TGTAAGACCACATC-GGGAC-GTTGGAATCGATTTGAGATTTACA
1 TGTAAGACCATGTCTGGGACAG-TGGCATCGATATAAGATTTACA
* * *
21857836 TGTAAGACCATGTCTGGGACATTGGTATCG-TATAAGATTT-CG
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
* **
21857878 TGTAAGACCCTGTCTGGGACAGTGGCATCGATATTGGA-TTACA
1 TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
21857921 TGTAAGACC
1 TGTAAGACC
21857930 TCGTATGGGG
Statistics
Matches: 77, Mismatches: 13, Indels: 8
0.79 0.13 0.08
Matches are distributed among these distances:
42 30 0.39
43 35 0.45
44 12 0.16
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (44 bp):
TGTAAGACCATGTCTGGGACAGTGGCATCGATATAAGATTTACA
Found at i:21857892 original size:42 final size:43
Alignment explanation
Indices: 21857827--21857929 Score: 129
Period size: 42 Copynumber: 2.4 Consensus size: 43
21857817 AATCGATTTG
* *
21857827 AGATTTACATGTAAGACCATGTCTGGGACATTGGTATCGTATA
1 AGATTTACATGTAAGACCATGTCTGGGACAGTGGCATCGTATA
* * *
21857870 AGATTT-CGTGTAAGACCCTGTCTGGGACAGTGGCATCGATATT
1 AGATTTACATGTAAGACCATGTCTGGGACAGTGGCATCG-TATA
*
21857913 GGA-TTACATGTAAGACC
1 AGATTTACATGTAAGACC
21857930 TCGTATGGGG
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
42 30 0.59
43 21 0.41
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (43 bp):
AGATTTACATGTAAGACCATGTCTGGGACAGTGGCATCGTATA
Found at i:21860701 original size:15 final size:15
Alignment explanation
Indices: 21860683--21860712 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
21860673 TTTACTATTA
*
21860683 TGTCTTTTGTATTTT
1 TGTCTTTTATATTTT
21860698 TGTCTTTTATATTTT
1 TGTCTTTTATATTTT
21860713 GCATGCATAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.10, C:0.07, G:0.10, T:0.73
Consensus pattern (15 bp):
TGTCTTTTATATTTT
Found at i:21862684 original size:2 final size:2
Alignment explanation
Indices: 21862679--21862705 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
21862669 TATATAATTA
21862679 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
21862706 GGCTTGCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:21869897 original size:53 final size:53
Alignment explanation
Indices: 21869808--21869918 Score: 145
Period size: 53 Copynumber: 2.1 Consensus size: 53
21869798 TACCACTAAA
* * *
21869808 TGTAACACCCTAACCCATCTCCATCGCCGAATTAGAGTTACAGAGTATTA-TG
1 TGTAACACCCTAACCCATATCCATCGCCGAATTAGAGTTACAAAGCATTACTG
* *
21869860 TGTAACACCCCTAACCCATATCCATTGTCGGAA-TAGAGTTACAAAGCATTACTG
1 TGTAACA-CCCTAACCCATATCCATCG-CCGAATTAGAGTTACAAAGCATTACTG
21869914 TGTAA
1 TGTAA
21869919 ACGCCTCTTA
Statistics
Matches: 51, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
52 7 0.14
53 33 0.65
54 11 0.22
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.27
Consensus pattern (53 bp):
TGTAACACCCTAACCCATATCCATCGCCGAATTAGAGTTACAAAGCATTACTG
Found at i:21875148 original size:42 final size:43
Alignment explanation
Indices: 21875053--21875149 Score: 108
Period size: 42 Copynumber: 2.3 Consensus size: 43
21875043 ACGGCTAAGC
* ** *
21875053 CACACGCCCGTATGCTAGGCTGTGTAAATCTTGAAATAGCCAT
1 CACACGCCCGTGTGCTAGGCCATGTAAATCTCGAAATAGCCAT
** * *
21875096 -ACACATCCGTGTGCTAGGCCATGTAACTCTCGAAATGGCC-T
1 CACACGCCCGTGTGCTAGGCCATGTAAATCTCGAAATAGCCAT
21875137 CACACGCCCGTGT
1 CACACGCCCGTGT
21875150 ACCAGGCCGT
Statistics
Matches: 43, Mismatches: 10, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
41 1 0.02
42 42 0.98
ACGTcount: A:0.25, C:0.30, G:0.22, T:0.24
Consensus pattern (43 bp):
CACACGCCCGTGTGCTAGGCCATGTAAATCTCGAAATAGCCAT
Found at i:21876158 original size:41 final size:41
Alignment explanation
Indices: 21876055--21876247 Score: 181
Period size: 41 Copynumber: 4.7 Consensus size: 41
21876045 ACCAGAGTGT
* * * * **
21876055 AAACCGGGGCACGTATGTGTAGTTCGGGGGTTTCGAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * * * * * *
21876096 GAACAGGGGCA-TTAATATGCAATTTAAGGGTACTGACGTAC
1 AAACAGGGGCACGT-ATGTGCAATTCAGGGGTACCGAAGTAC
*
21876137 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCAAAGTAC
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * * *
21876178 AAATAGGGGCACATATGTGTAATTCAGGGGTACCGAAGTAT
1 AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
* * *
21876219 AAACAGGGGCATGTATGTGTAATTTAGGG
1 AAACAGGGGCACGTATGTGCAATTCAGGG
21876248 ATTAACTAAC
Statistics
Matches: 120, Mismatches: 30, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
40 1 0.01
41 118 0.98
42 1 0.01
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (41 bp):
AAACAGGGGCACGTATGTGCAATTCAGGGGTACCGAAGTAC
Found at i:21876166 original size:21 final size:21
Alignment explanation
Indices: 21876140--21876207 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
21876130 GACGTACAAA
*
21876140 CAGGGGCACGTATGTGCAATT
1 CAGGGGCACATATGTGCAATT
* * * *
21876161 CAGGGGTACCA-AAGTACAAAT
1 CAGGGGCA-CATATGTGCAATT
*
21876182 -AGGGGCACATATGTGTAATT
1 CAGGGGCACATATGTGCAATT
21876202 CAGGGG
1 CAGGGG
21876208 TACCGAAGTA
Statistics
Matches: 34, Mismatches: 10, Indels: 6
0.68 0.20 0.12
Matches are distributed among these distances:
19 2 0.06
20 12 0.35
21 19 0.56
22 1 0.03
ACGTcount: A:0.31, C:0.16, G:0.32, T:0.21
Consensus pattern (21 bp):
CAGGGGCACATATGTGCAATT
Found at i:21876490 original size:17 final size:17
Alignment explanation
Indices: 21876470--21876507 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
21876460 TCAATCTCAA
21876470 AATTCA-ATTTAATCCAT
1 AATTCACATTT-ATCCAT
*
21876487 AATTCACATTTATTCAT
1 AATTCACATTTATCCAT
21876504 AATT
1 AATT
21876508 ATAATTTTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.79
18 4 0.21
ACGTcount: A:0.39, C:0.16, G:0.00, T:0.45
Consensus pattern (17 bp):
AATTCACATTTATCCAT
Found at i:21877477 original size:12 final size:12
Alignment explanation
Indices: 21877460--21877502 Score: 56
Period size: 11 Copynumber: 3.8 Consensus size: 12
21877450 AACTAATCCT
21877460 CTCTCAAATTTC
1 CTCTCAAATTTC
21877472 CTCTCAAA-TTC
1 CTCTCAAATTTC
21877483 CT-TCAAAATTT-
1 CTCTC-AAATTTC
21877494 CTCTCAAAT
1 CTCTCAAAT
21877503 CCATATTTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 7
0.80 0.00 0.20
Matches are distributed among these distances:
10 2 0.07
11 14 0.50
12 12 0.43
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (12 bp):
CTCTCAAATTTC
Found at i:21877582 original size:10 final size:10
Alignment explanation
Indices: 21877559--21877605 Score: 58
Period size: 10 Copynumber: 4.7 Consensus size: 10
21877549 TAAATCCCTA
**
21877559 TTTTAAATAA
1 TTTTAAATTT
21877569 TTTTAAATTT
1 TTTTAAATTT
**
21877579 TTTTTTATTT
1 TTTTAAATTT
21877589 TTTTAAATTT
1 TTTTAAATTT
21877599 TTTTAAA
1 TTTTAAA
21877606 CTGTAAAAAT
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (10 bp):
TTTTAAATTT
Found at i:21878686 original size:7 final size:7
Alignment explanation
Indices: 21878674--21878706 Score: 66
Period size: 7 Copynumber: 4.7 Consensus size: 7
21878664 TAGTCGATTG
21878674 GTATTTA
1 GTATTTA
21878681 GTATTTA
1 GTATTTA
21878688 GTATTTA
1 GTATTTA
21878695 GTATTTA
1 GTATTTA
21878702 GTATT
1 GTATT
21878707 ATGTATATAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (7 bp):
GTATTTA
Found at i:21879335 original size:18 final size:18
Alignment explanation
Indices: 21879308--21879347 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
21879298 TAGGTGCGTT
* *
21879308 TCCTAGCCCTTTTATGTA
1 TCCTAACCCTTATATGTA
*
21879326 TCCTAACCCTTATATGTT
1 TCCTAACCCTTATATGTA
21879344 TCCT
1 TCCT
21879348 TTTTCGAGTC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.17, C:0.30, G:0.07, T:0.45
Consensus pattern (18 bp):
TCCTAACCCTTATATGTA
Found at i:21879646 original size:21 final size:21
Alignment explanation
Indices: 21879606--21879652 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
21879596 ATGCCCTACT
*
21879606 GGAAGAACCAGAATCCCCGCC
1 GGAAGAACCACAATCCCCGCC
21879627 GGAAGAACCACAA-CCGCCGCC
1 GGAAGAACCACAATCC-CCGCC
*
21879648 AGAAG
1 GGAAG
21879653 CTGGACAAAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 2 0.09
21 21 0.91
ACGTcount: A:0.36, C:0.36, G:0.26, T:0.02
Consensus pattern (21 bp):
GGAAGAACCACAATCCCCGCC
Found at i:21879914 original size:22 final size:22
Alignment explanation
Indices: 21879889--21880825 Score: 1078
Period size: 22 Copynumber: 43.0 Consensus size: 22
21879879 TTTAATTGAC
* *
21879889 AAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
21879911 AAACCCTAACCCTAACCCTTAAATTAA
1 AAACCCT-A----AACCCTTAACTTAA
* * *
21879938 AAAACCTAACCCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
21879960 AAACCCTAAACCCTTAACCTAAAA
1 AAACCCTAAACCCTTAA-CT-TAA
* *
21879984 ACCCTAACCCTAAACACTTAACCTAA
1 A----AACCCTAAACCCTTAACTTAA
*
21880010 AAACCCT-AACCCATTAACCTAA
1 AAACCCTAAACCC-TTAACTTAA
21880032 AAACCCT-AACCCTTAACATTAA
1 AAACCCTAAACCCTTAAC-TTAA
* * *
21880054 CAA-TCTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
* *
21880075 TAAACCCTAAACTCTTAAATTAA
1 -AAACCCTAAACCCTTAACTTAA
*
21880098 AAACCCTAAACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880120 AAACCCTAAATCCTTAAAC-TAA
1 AAACCCTAAACCCTT-AACTTAA
* *
21880142 AAACCCT-AATCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880163 AAACCCT-AACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
21880184 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880206 AAACCATAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880228 AAACCCT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880249 AAACCCTAAACCCTTAACAT-A
1 AAACCCTAAACCCTTAACTTAA
* *
21880270 AAACCAT-AACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880291 AAACCCTAAACCC-TAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
21880312 AAACCCTAGACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880334 AAACACTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
* *
21880356 AAACCCT-AACCTTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
21880377 AAACCCTAAACCCTAAACCTAA
1 AAACCCTAAACCCTTAACTTAA
21880399 AAACCCTAAA-CCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
21880420 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880442 AAACCCT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
21880463 AAACCTTAAACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880485 AAACCCT-AACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
21880506 AAACCCTAAA-CCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
21880527 AAACCCTAAACCCTTAACTT-A
1 AAACCCTAAACCCTTAACTTAA
*
21880548 AAACCCT-AA-CCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* * * *
21880568 AAATCCTAAACCCGTCACCTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880590 AAACCCT-AACCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
21880611 AAACCCTAAA-CCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
21880632 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880654 AAACACTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880676 AAACCCT-AACCCTTAAATTAA
1 AAACCCTAAACCCTTAACTTAA
* *
21880697 AAACCCTAACCCCTTAACCTAA
1 AAACCCTAAACCCTTAACTTAA
** *
21880719 AAATACT-AACCCTTAACCT--
1 AAACCCTAAACCCTTAACTTAA
** *
21880738 AAACCCTAAACATTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
*
21880760 AAACCCTAAACCCTTAACTTTA
1 AAACCCTAAACCCTTAACTTAA
21880782 AAACCCTAAACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
*
21880804 AAATCCT-AACCCTTAACTTAA
1 AAACCCTAAACCCTTAACTTAA
21880825 A
1 A
21880826 TATAATTTGA
Statistics
Matches: 790, Mismatches: 88, Indels: 75
0.83 0.09 0.08
Matches are distributed among these distances:
19 13 0.02
20 32 0.04
21 294 0.37
22 392 0.50
23 19 0.02
24 2 0.00
26 4 0.01
27 19 0.02
28 15 0.02
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (22 bp):
AAACCCTAAACCCTTAACTTAA
Found at i:21879965 original size:43 final size:43
Alignment explanation
Indices: 21879918--21880825 Score: 1047
Period size: 43 Copynumber: 21.0 Consensus size: 43
21879908 TAAAAACCCT
* * * *
21879918 AACCCTAACCCTTAAATTAAAAAACCTAACCCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
21879961 AACCCTAAACCCTTAACCTAAAAACCCTAACCCTAAACACTTAACCTAAA
1 AACCCT-AACCCTTAA-CT-TAAA----AACCCTAAACCCTTAACTTAAA
* *
21880011 AACCCTAACCCATTAACCTAAAAACCCT-AACCCTTAACATTAAC
1 AACCCTAACCC-TTAACTTAAAAACCCTAAACCCTTAAC-TTAAA
* * * *
21880055 AA-TCTAAACCCTTAACCTAATAAACCCTAAACTCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAA-AAACCCTAAACCCTTAACTTAAA
* *
21880099 AACCCTAAACCCTTAAATTAAAAACCCTAAATCCTTAAAC-TAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTT-AACTTAAA
* * *
21880143 AACCCTAATCCTTAACCTAAAAACCCT-AACCCTTAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880185 AACCCTAAACCCTTAACTTAAAAACCATAAACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* *
21880229 AACCCTAACCCTTAAATTAAAAACCCTAAACCCTTAACAT-AA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
21880271 AACCATAACCCTTAACCTAAAAACCCTAAACCC-TAACTTTAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880313 AACCCTAGACCCTTAACTTAAAAACACTAAACCCTTAACTTAAA
1 AACCCTA-ACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * *
21880357 AACCCTAACCTTTAAATTAAAAACCCTAAACCCTAAACCTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880400 AACCCTAAACCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * *
21880443 AACCCTAACCCTTAAATTAAAAACCTTAAACCCTTAACCTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880486 AACCCTAACCCTTAACCTAAAAACCCTAAA-CCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880528 AACCCTAAACCCTTAACTT-AAAACCCT-AA-CCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* * * * *
21880569 AATCCTAAACCCGTCACCTAAAAACCCT-AACCCTTAACCTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880612 AACCCTAAACCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
1 AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* *
21880655 AACACTAAACCCTTAACTTAAAAACCCT-AACCCTTAAATTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
* ** *
21880698 AACCCTAACCCCTTAACCTAAAAATACT-AACCCTTAACCT--A
1 AACCCTAA-CCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
** * *
21880739 AACCCTAAACATTTAACTTTAAAACCCTAAACCCTTAACTTTAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
*
21880783 AACCCTAAACCCTTAACTTAAAAATCCT-AACCCTTAACTTAAA
1 AACCCT-AACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
21880826 TATAATTTGA
Statistics
Matches: 740, Mismatches: 95, Indels: 60
0.83 0.11 0.07
Matches are distributed among these distances:
41 56 0.08
42 122 0.16
43 356 0.48
44 141 0.19
45 26 0.04
46 3 0.00
48 3 0.00
49 6 0.01
50 27 0.04
ACGTcount: A:0.46, C:0.31, G:0.00, T:0.23
Consensus pattern (43 bp):
AACCCTAACCCTTAACTTAAAAACCCTAAACCCTTAACTTAAA
Found at i:21879982 original size:13 final size:13
Alignment explanation
Indices: 21879964--21880010 Score: 51
Period size: 13 Copynumber: 3.5 Consensus size: 13
21879954 ACTTTAAAAC
21879964 CCTAAACCCTTAA
1 CCTAAACCCTTAA
21879977 CCTAAAAACCC-TAA
1 CCT--AAACCCTTAA
*
21879991 CCCTAAACACTTAA
1 -CCTAAACCCTTAA
21880005 CCTAAA
1 CCTAAA
21880011 AACCCTAACC
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
13 14 0.48
14 6 0.21
15 9 0.31
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (13 bp):
CCTAAACCCTTAA
Found at i:21879991 original size:14 final size:14
Alignment explanation
Indices: 21879967--21880020 Score: 65
Period size: 14 Copynumber: 3.8 Consensus size: 14
21879957 TTAAAACCCT
21879967 AAACCCTTAACCTAA
1 AAACCC-TAACCTAA
21879982 AAACCCTAACCCTAA
1 AAACCCTAA-CCTAA
* *
21879997 ACA-CTTAACCTAA
1 AAACCCTAACCTAA
21880010 AAACCCTAACC
1 AAACCCTAACC
21880021 CATTAACCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
13 7 0.21
14 13 0.39
15 13 0.39
ACGTcount: A:0.46, C:0.37, G:0.00, T:0.17
Consensus pattern (14 bp):
AAACCCTAACCTAA
Found at i:21879992 original size:28 final size:27
Alignment explanation
Indices: 21879961--21880054 Score: 117
Period size: 28 Copynumber: 3.6 Consensus size: 27
21879951 TTAACTTTAA
21879961 AACCCTAAACCCTTAACCTAAAAACCCT
1 AACCCTAAA-CCTTAACCTAAAAACCCT
21879989 AACCCTAAACACTTAACCTAAAAACCCT
1 AACCCTAAAC-CTTAACCTAAAAACCCT
21880017 AACCC---A--TTAACCTAAAAACCCT
1 AACCCTAAACCTTAACCTAAAAACCCT
* *
21880039 AACCCTTAACATTAAC
1 AACCCTAAACCTTAAC
21880055 AATCTAAACC
Statistics
Matches: 60, Mismatches: 0, Indels: 13
0.82 0.00 0.18
Matches are distributed among these distances:
22 21 0.35
25 2 0.03
27 6 0.10
28 31 0.52
ACGTcount: A:0.45, C:0.36, G:0.00, T:0.19
Consensus pattern (27 bp):
AACCCTAAACCTTAACCTAAAAACCCT
Found at i:21884180 original size:125 final size:125
Alignment explanation
Indices: 21883781--21884245 Score: 587
Period size: 125 Copynumber: 3.7 Consensus size: 125
21883771 CATGTTACTA
* * * * **
21883781 TAGCAAAAGCGCGTCCACGTGAGTGTGATTTCACAAATTCTTCTCATAAAGCATCCTGCAAGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
** * * * *
21883846 CG-ACTTTATACTATTTGCTCAGAAACGTCAAGTTGAAATTATTTTTCTAGGACCAACTG
66 CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
* * *
21883905 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTTA-AATAGCATGCTGCTTGTA
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAA-AGCATCCTGCTTGAA
* * * *
21883969 GCGTTGTTTTATACTATTTGCTCAGAAATGTCAACTCAAAATTA-TTTTCTCAGGACCTACTG
65 GCGTT-TTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTC-CAGGACCAACTG
* * * * * *
21884031 TAGCAAAAGCGCGTCCACGTGGGCGCGACTTCACAAATTCTTCTTATAAAGCATCTTTCTTTAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
*
21884096 CGTTTTTTAAACTATTTGCTCAAAAACGTCAACTCGAAATTATTTCTTCCAGGA-CAACTG
66 CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTT-TTCCAGGACCAACTG
* * *
21884156 TAGTAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCACAAAGCATCCTACTTGAAG
1 TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
* *
21884221 CATTTTTTAAACTAGTTGCTCAGAA
66 CGTTTTTTAAACTATTTGCTCAGAA
21884246 GCGACTTCAA
Statistics
Matches: 294, Mismatches: 40, Indels: 13
0.85 0.12 0.04
Matches are distributed among these distances:
123 2 0.01
124 55 0.19
125 123 0.42
126 109 0.37
127 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31
Consensus pattern (125 bp):
TAGCAAAAGCGCGTCCACGAGGGCGCGATTTCACAAATTCTTCTCATAAAGCATCCTGCTTGAAG
CGTTTTTTAAACTATTTGCTCAGAAACGTCAACTCGAAATTATTTTTCCAGGACCAACTG
Found at i:21891342 original size:12 final size:11
Alignment explanation
Indices: 21891317--21891367 Score: 59
Period size: 11 Copynumber: 4.7 Consensus size: 11
21891307 ACGGTATTGT
*
21891317 AAAAAAAAAT-
1 AAAAAAAATTC
* *
21891327 AAAAAAACTTG
1 AAAAAAAATTC
21891338 AAAAAAAATTC
1 AAAAAAAATTC
*
21891349 AAAAAAAATTT
1 AAAAAAAATTC
21891360 AAAAAAAA
1 AAAAAAAA
21891368 GTTTGTATTC
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
10 8 0.23
11 27 0.77
ACGTcount: A:0.78, C:0.04, G:0.02, T:0.16
Consensus pattern (11 bp):
AAAAAAAATTC
Found at i:21891345 original size:22 final size:22
Alignment explanation
Indices: 21891312--21891367 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 22
21891302 GTATTACGGT
21891312 ATTGTAAAAAAAAAT-AAAAAAA
1 ATTG-AAAAAAAAATCAAAAAAA
* *
21891334 CTTGAAAAAAAATTCAAAAAAA
1 ATTGAAAAAAAAATCAAAAAAA
*
21891356 ATTTAAAAAAAA
1 ATTGAAAAAAAA
21891368 GTTTGTATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
21 9 0.31
22 20 0.69
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.20
Consensus pattern (22 bp):
ATTGAAAAAAAAATCAAAAAAA
Found at i:21891449 original size:27 final size:28
Alignment explanation
Indices: 21891412--21891481 Score: 108
Period size: 26 Copynumber: 2.5 Consensus size: 28
21891402 AGTATTGAAG
*
21891412 AAAAAAAAGAAAAAAAAATCGGAATT-A
1 AAAAAAAAGAAAAAAAAATCGAAATTAA
21891439 AAAAAAAAG-AAAAAAAATCGAAATTGAA
1 AAAAAAAAGAAAAAAAAATCGAAATT-AA
21891467 AAAAAAAAGAAAAAA
1 AAAAAAAAGAAAAAA
21891482 GAGATTTTAA
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
26 15 0.38
27 9 0.23
28 10 0.26
29 5 0.13
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.09
Consensus pattern (28 bp):
AAAAAAAAGAAAAAAAAATCGAAATTAA
Found at i:21891451 original size:26 final size:27
Alignment explanation
Indices: 21891412--21891481 Score: 106
Period size: 28 Copynumber: 2.6 Consensus size: 27
21891402 AGTATTGAAG
*
21891412 AAAAAAAAGAAAAAAAAATCGGAATT-A
1 AAAAAAAAG-AAAAAAAATCGAAATTAA
21891439 AAAAAAAAGAAAAAAAATCGAAATTGAA
1 AAAAAAAAGAAAAAAAATCGAAATT-AA
21891467 AAAAAAAAGAAAAAA
1 AAAAAAAAGAAAAAA
21891482 GAGATTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 15 0.38
27 9 0.22
28 16 0.40
ACGTcount: A:0.79, C:0.03, G:0.10, T:0.09
Consensus pattern (27 bp):
AAAAAAAAGAAAAAAAATCGAAATTAA
Found at i:21908799 original size:61 final size:58
Alignment explanation
Indices: 21908688--21908819 Score: 183
Period size: 61 Copynumber: 2.2 Consensus size: 58
21908678 ATTACTTTAA
* * * *
21908688 TATTAAATTAATATAATACTTATTAAGATAAATATTAGATTAAATTTAATATTAAATC
1 TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATGTAATATTAAAAC
*
21908746 TATTAAATTGATAGAATACTTATCTATAAGATAAATATTAAATTAAATGTAATATTAAAAC
1 TATTAAATTAATAGAATACTTA--T-TAAGATAAATATTAAATTAAATGTAATATTAAAAC
*
21908807 TATTAAAATAATA
1 TATTAAATTAATA
21908820 TTATTTTTGG
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
58 20 0.31
60 1 0.02
61 43 0.67
ACGTcount: A:0.52, C:0.04, G:0.05, T:0.40
Consensus pattern (58 bp):
TATTAAATTAATAGAATACTTATTAAGATAAATATTAAATTAAATGTAATATTAAAAC
Found at i:21920645 original size:30 final size:30
Alignment explanation
Indices: 21920588--21920646 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
21920578 GCCTTTTGAA
* *
21920588 AATATTTACAAAAAGAGACATCTAATTTTT
1 AATATTTACAAAAAGAGACACCAAATTTTT
21920618 AATATTTACAAAAAGAGTA-ACCAAATTTT
1 AATATTTACAAAAAGAG-ACACCAAATTTT
21920647 GAAAATAATT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (30 bp):
AATATTTACAAAAAGAGACACCAAATTTTT
Found at i:21927760 original size:26 final size:25
Alignment explanation
Indices: 21927705--21927760 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 25
21927695 TAATAAAAAT
21927705 TTATTATAAATTAATTAAATTCAAC
1 TTATTATAAATTAATTAAATTCAAC
* * *
21927730 ATATTAATAATTTAATTACAATTTAA-
1 TTATT-ATAAATTAATTA-AATTCAAC
21927756 TTATT
1 TTATT
21927761 TTATAATAAT
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
25 4 0.16
26 15 0.60
27 6 0.24
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.48
Consensus pattern (25 bp):
TTATTATAAATTAATTAAATTCAAC
Found at i:21933034 original size:125 final size:125
Alignment explanation
Indices: 21932878--21933135 Score: 455
Period size: 125 Copynumber: 2.1 Consensus size: 125
21932868 TAATAAATTT
*
21932878 TTAATAAAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTAGTCC
1 TTAAT-AAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCC
21932943 TTTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
65 TTTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
*
21933004 TTAATAAACCAACCCACTATCGA-CCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCC
1 TTAATAAACCAACCCACCATC-ACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCC
* *
21933068 TTTTAATTAATTTCAATCTATAATTCAACTTTTAGCTCTTACGTGATTTAGTCCATGTACA
65 TTTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
21933129 TTAATAA
1 TTAATAA
21933136 CTCCTAATTC
Statistics
Matches: 127, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
125 121 0.95
126 6 0.05
ACGTcount: A:0.33, C:0.21, G:0.08, T:0.38
Consensus pattern (125 bp):
TTAATAAACCAACCCACCATCACCCATCAACATTTAATTAGTGGTGTAATTACTACTTTACTCCT
TTTAATTAATTTCAATCTATAATTCAACTTTTAGCACTTACGCGATTTAGTCCATGTACA
Found at i:21935476 original size:64 final size:64
Alignment explanation
Indices: 21935404--21935594 Score: 305
Period size: 64 Copynumber: 3.0 Consensus size: 64
21935394 AAAATTGGAG
21935404 ACTCAATCTCAGTCACTTAATCTGAAATACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
1 ACTCAATCTCAGTCACTTAATCTGAAATACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
* * * *
21935468 ACTCAATCTCAGTCATTTAATCTGAATTACTTACAACAGTCAATTCCTAAAACTATCGACGAAA
1 ACTCAATCTCAGTCACTTAATCTGAAATACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
*
21935532 ACTCAATCTCAATCACTTAATCT-AAATTACTTACAATC-GTCAATTCCCAAAACTATCGACAAA
1 ACTCAATCTCAGTCACTTAATCTGAAA-TACTTACAA-CAGTCAATTCCCAAAACTATCGACAAA
21935595 CTTACCTCGC
Statistics
Matches: 116, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
63 2 0.02
64 113 0.97
65 1 0.01
ACGTcount: A:0.41, C:0.26, G:0.06, T:0.28
Consensus pattern (64 bp):
ACTCAATCTCAGTCACTTAATCTGAAATACTTACAACAGTCAATTCCCAAAACTATCGACAAAA
Found at i:21940938 original size:41 final size:41
Alignment explanation
Indices: 21940876--21940991 Score: 153
Period size: 41 Copynumber: 2.8 Consensus size: 41
21940866 TTTTGTAAGT
* *
21940876 TCAGGCTTTATGCCTAGCAGGCTTTATGCCGGTGAATTATA
1 TCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAAATATA
* * *
21940917 TCAGACTTTATGTCTAGCAGGCTTTGTGCCGGTGAAATGTA
1 TCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAAATATA
**
21940958 TC-GAGCTTGGTGCCTAGCAGGCTTTATGCCGGTG
1 TCAGA-CTTTATGCCTAGCAGGCTTTATGCCGGTG
21940992 TTATATACAA
Statistics
Matches: 65, Mismatches: 9, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
40 2 0.03
41 63 0.97
ACGTcount: A:0.19, C:0.20, G:0.28, T:0.33
Consensus pattern (41 bp):
TCAGACTTTATGCCTAGCAGGCTTTATGCCGGTGAAATATA
Found at i:21954070 original size:136 final size:136
Alignment explanation
Indices: 21953844--21954395 Score: 908
Period size: 136 Copynumber: 4.1 Consensus size: 136
21953834 TATCACTTTA
* * *
21953844 ACATTTTAGTCTTTTAACATTAAAATTACTAAAAATTAC-TTACAAAATAGTCTTATTGAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
21953908 AAAACTTAATAATTTATCATAAAACTTCAAAAACATACTAAAATCATCAATTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
*
21953973 CACTTG
131 CATTTG
* *
21953979 ACATTTTAATCCTTTAACATTAAAATTGCTAAAAATTACTTTACTAAATAGTCTTATTTAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
21954044 AAAGCTTAATAATTTATAATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCAGAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
21954109 CATTTG
131 CATTTG
* * * *
21954115 ACATTTTAGTCCTTTAACATTAAAATTGCTAAAAATTACTTTGCAAAATAGTCTTATTCAACAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* *
21954180 AAAGCTTACTAATTTATCATAAAACTTCAAAAACACACTAAACTCATCAATTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
21954245 CATTTG
131 CATTTG
*
21954251 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAATAAT
1 ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
* * *
21954316 AAAGCTTAATAATTTATCATAAAACTTAAAAAAAATACTAAACTCATCAGTTACATAATCCATAA
66 AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
21954381 CATTTG
131 CATTTG
21954387 ACAGTTTTA
1 ACA-TTTTA
21954396 CAAATTAGTT
Statistics
Matches: 387, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
135 36 0.09
136 346 0.89
137 5 0.01
ACGTcount: A:0.46, C:0.16, G:0.04, T:0.35
Consensus pattern (136 bp):
ACATTTTAATCCTTTAACATTAAAATTACTAAAAATTACTTTACAAAATAGTCTTATTTAACAAT
AAAGCTTAATAATTTATCATAAAACTTCAAAAACATACTAAACTCATCAATTACATAATCCATAA
CATTTG
Found at i:21958329 original size:20 final size:20
Alignment explanation
Indices: 21958229--21958329 Score: 71
Period size: 20 Copynumber: 5.0 Consensus size: 20
21958219 ACTTGTTGTT
*
21958229 TGAATGCACATTCGTACCCC
1 TGAATGCACATTCGTGCCCC
** * *
21958249 TGTTTGTAC-TTCGGTACCCC
1 TGAATGCACATTC-GTGCCCC
*
21958269 TGAATGCACATTTGTGCCCC
1 TGAATGCACATTCGTGCCCC
** * *
21958289 TGTTTGTAC-TTCGGTGACCC
1 TGAATGCACATTC-GTGCCCC
*
21958309 TGAATGCACATGCGTGCCCC
1 TGAATGCACATTCGTGCCCC
21958329 T
1 T
21958330 ATTTGTACTT
Statistics
Matches: 59, Mismatches: 18, Indels: 8
0.69 0.21 0.09
Matches are distributed among these distances:
19 5 0.08
20 50 0.85
21 4 0.07
ACGTcount: A:0.17, C:0.31, G:0.21, T:0.32
Consensus pattern (20 bp):
TGAATGCACATTCGTGCCCC
Found at i:21958359 original size:40 final size:40
Alignment explanation
Indices: 21958229--21958348 Score: 179
Period size: 40 Copynumber: 3.0 Consensus size: 40
21958219 ACTTGTTGTT
*
21958229 TGAATGCACATTCGTACCCCTGTTTGTACTTCGGTACCCC
1 TGAATGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
*
21958269 TGAATGCACATTTGTGCCCCTGTTTGTACTTCGGTGA-CCC
1 TGAATGCACATTCGTGCCCCTGTTTGTACTTCGGT-ACCCC
* * *
21958309 TGAATGCACATGCGTGCCCCTATTTGTACTTCAGTACCCC
1 TGAATGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
21958349 CGAACACACA
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 70 0.97
41 1 0.01
ACGTcount: A:0.17, C:0.31, G:0.19, T:0.33
Consensus pattern (40 bp):
TGAATGCACATTCGTGCCCCTGTTTGTACTTCGGTACCCC
Found at i:21968525 original size:18 final size:17
Alignment explanation
Indices: 21968487--21968527 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
21968477 ATCTTGTTCG
*
21968487 TATTTTTAGAAAAAACT
1 TATTTTTAGAAAAAACA
*
21968504 TATTTTTAGTAAAAATCA
1 TATTTTTAG-AAAAAACA
21968522 TATTTT
1 TATTTT
21968528 CAGCCAACCG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 9 0.43
18 12 0.57
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (17 bp):
TATTTTTAGAAAAAACA
Found at i:21975688 original size:40 final size:40
Alignment explanation
Indices: 21975644--21975721 Score: 120
Period size: 40 Copynumber: 1.9 Consensus size: 40
21975634 TTAATAAAAG
21975644 AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTAAT
1 AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTAAT
* * * *
21975684 AAAGTCCAGCAACTCATTTATTACCTAAGATGAGTTTA
1 AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTA
21975722 TTTAAATTAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 34 1.00
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (40 bp):
AAAGTCCAACAACTCAATTACTAACTAAGATGAGTTTAAT
Found at i:21981602 original size:40 final size:40
Alignment explanation
Indices: 21981558--21981635 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
21981548 TAAATAAAAG
21981558 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
1 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
* * * * *
21981598 AAAGTCCAGCAACTTATTTATTAACTAAGATGAGTTTA
1 AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTA
21981636 TTTAAATTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.31
Consensus pattern (40 bp):
AAAGTCCAACAACTCAATTACTAACTAAAATGAGTTTAAT
Found at i:21983313 original size:13 final size:15
Alignment explanation
Indices: 21983285--21983316 Score: 50
Period size: 13 Copynumber: 2.3 Consensus size: 15
21983275 TTACAGATAA
21983285 ATATGTCAGAATCAG
1 ATATGTCAGAATCAG
21983300 ATATG-CAGAA-CAG
1 ATATGTCAGAATCAG
21983313 ATAT
1 ATAT
21983317 ACAAAATTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
13 7 0.41
14 5 0.29
15 5 0.29
ACGTcount: A:0.44, C:0.12, G:0.19, T:0.25
Consensus pattern (15 bp):
ATATGTCAGAATCAG
Found at i:21992971 original size:45 final size:45
Alignment explanation
Indices: 21992920--21993007 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
21992910 TGTGAACCGA
* * *
21992920 ACATCATTGATTAGTAAGGTGGTTGTTATGTGCTGATTCCACCAG
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
*
21992965 ACATCATTGATTAATAAGGTGGTTGCTATGTGTTGAATCCACC
1 ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACC
21993008 GAGTATATGT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.35
Consensus pattern (45 bp):
ACATCATTGATTAATAAGGTGGTTGCTATGTGCTGAATCCACCAG
Found at i:21999821 original size:24 final size:25
Alignment explanation
Indices: 21999785--21999836 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
21999775 ATTGTTTAAA
*
21999785 TTTATCATATATTATCATTTTAAGT
1 TTTATCATATATTATCATTCTAAGT
* *
21999810 TTTAT-ATGTATTATTATTCTAAGT
1 TTTATCATATATTATCATTCTAAGT
21999834 TTT
1 TTT
21999837 CATGTGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (25 bp):
TTTATCATATATTATCATTCTAAGT
Found at i:21999900 original size:24 final size:21
Alignment explanation
Indices: 21999845--21999900 Score: 51
Period size: 23 Copynumber: 2.5 Consensus size: 21
21999835 TTCATGTGTA
*
21999845 ATTACTTT-TTTTAATTTATC
1 ATTATTTTATTTTAATTTATC
21999865 ATATATTCTTATTTTAATTTCCATC
1 AT-TATT-TTATTTTAATTT--ATC
21999890 TATTATTTTAT
1 -ATTATTTTAT
21999901 ATAGTTTAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
20 2 0.07
21 3 0.10
22 2 0.07
23 9 0.31
24 4 0.14
25 7 0.24
26 2 0.07
ACGTcount: A:0.27, C:0.11, G:0.00, T:0.62
Consensus pattern (21 bp):
ATTATTTTATTTTAATTTATC
Found at i:21999982 original size:19 final size:19
Alignment explanation
Indices: 21999960--21999998 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
21999950 AAAATGGTTT
*
21999960 TATA-ATATACTATTTTATA
1 TATACATATA-TAATTTATA
21999979 TATACATATATAATTTATA
1 TATACATATATAATTTATA
21999998 T
1 T
21999999 TAAATTATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (19 bp):
TATACATATATAATTTATA
Found at i:22009522 original size:143 final size:143
Alignment explanation
Indices: 22009265--22009915 Score: 964
Period size: 143 Copynumber: 4.6 Consensus size: 143
22009255 ATTGAAGTCA
* * * *
22009265 TTACGGTGAATCTTATCTTTCTAAAGTTGCAGCGGAGCAGA-TGAATCCACCAGCCTTATCTCAC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * *
22009329 TGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCGTTACAATGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22009394 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* *
22009407 TTACGGCGAATCTTATCTTCCTGAAGTTACAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * **
22009472 TGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCTCTGGCGTTGTAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22009537 TTAAAGCTACAAG
131 TTAAAGCTACAAG
** * ** * *
22009550 TTACATTGAATCTTATCTTCCTAAAGTTATAGCGGAGCAGATTGAAGTCACTAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * *
22009615 TAAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCATTACAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22009680 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * *
22009693 TTATGGTGAATCTTATCTT-CTGAAATTGCAGTGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
* * * * **
22009757 TAAAGTTGTAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTTGTAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
22009822 TTAAAGCTACAAG
131 TTAAAGCTACAAG
* * *
22009835 TTATGGTGAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCC
1 TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
22009900 TGAAGTTGCAGCGGAG
66 TGAAGTTGCAGCGGAG
22009916 TAGATCGAAG
Statistics
Matches: 459, Mismatches: 48, Indels: 3
0.90 0.09 0.01
Matches are distributed among these distances:
142 164 0.36
143 295 0.64
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (143 bp):
TTACGGTGAATCTTATCTTCCTGAAGTTGCAGCGGAGCAGATTGAAGCCACCAGCCTTATCTCCC
TGAAGTTGCAGCGGAGCAGACTGAAGACAGCGAATCTTATTTCCCTGGCGTTACAGTGGAACAGA
TTAAAGCTACAAG
Found at i:22009793 original size:285 final size:286
Alignment explanation
Indices: 22009265--22009915 Score: 1011
Period size: 285 Copynumber: 2.3 Consensus size: 286
22009255 ATTGAAGTCA
* * *
22009265 TTACGGTGAATCTTATCTTTCTAAAGTTGCAGCGGAGCAGA-TGAA-TCCACCAGCCTTATCTCA
1 TTACAGTGAATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGT-CACCAGCCTTATCTCC
*
22009328 CTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCGTTACAATGGAACAG
65 CTGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCATTACAATGGAACAG
*
22009393 ATTAAAGCTACAAGTTACGGCGAATCTTATCTTCCTGAAGTTACAGCGGAGCAGATTGAAGCCAC
130 ATTAAAGCTACAAGTTACGGCGAATCTTATCTTCCTGAAATTACAGCGGAGCAGATTGAAGCCAC
* * * * *
22009458 CAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTGAAGACAGCGAATCTTATTTCTCTGGCGT
195 CAGCCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGT
22009523 TGTAGTGGAACAGATTAAAGCTACAAG
260 TGTAGTGGAACAGATTAAAGCTACAAG
* ** *
22009550 TTACATTGAATCTTATCTTCCTAAAGTTATAGCGGAGCAGATTGAAGTCACTAGCCTTATCTCCC
1 TTACAGTGAATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGTCACCAGCCTTATCTCCC
* * * *
22009615 TAAAGTTGCAGTGGAGCAGACTGAAGATAGCGAATCTTATTTCCCTGGCATTACAGTGGAACAGA
66 TGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCATTACAATGGAACAGA
* * * *
22009680 TTAAAGCTACAAGTTATGGTGAATCTTATCTT-CTGAAATTGCAGTGGAGCAGATTGAAGCCACC
131 TTAAAGCTACAAGTTACGGCGAATCTTATCTTCCTGAAATTACAGCGGAGCAGATTGAAGCCACC
*
22009744 AGCCTTATCTCCCTAAAGTTGTAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTT
196 AGCCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTT
22009809 GTAGTGGAACAGATTAAAGCTACAAG
261 GTAGTGGAACAGATTAAAGCTACAAG
** * * * *
22009835 TTATGGTGAATCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAGCCTTATCTCCC
1 TTACAGTGAATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGTCACCAGCCTTATCTCCC
22009900 TGAAGTTGCAGCGGAG
66 TGAAGTTGCAGCGGAG
22009916 TAGATCGAAG
Statistics
Matches: 329, Mismatches: 35, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
285 219 0.67
286 109 0.33
287 1 0.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (286 bp):
TTACAGTGAATCTTATCTTCCTAAAGTTGCAGCGGAGCAGATTGAAGTCACCAGCCTTATCTCCC
TGAAGTTGCAGCGGAGCAGACTGAAGATAGCAAATCTTATTTCCCTGGCATTACAATGGAACAGA
TTAAAGCTACAAGTTACGGCGAATCTTATCTTCCTGAAATTACAGCGGAGCAGATTGAAGCCACC
AGCCTTATCTCCCTAAAGTTGCAGCGGAGCAGACTGAAGACAACGAATCTTATTTCCCTGACGTT
GTAGTGGAACAGATTAAAGCTACAAG
Found at i:22009942 original size:44 final size:44
Alignment explanation
Indices: 22009845--22009947 Score: 125
Period size: 44 Copynumber: 2.3 Consensus size: 44
22009835 TTATGGTGAA
* * * *
22009845 TCTTATCTTCCTGAAGTTGCAGTGGAGTAGATTGAAGCCACCAG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGCCACAAG
* **
22009889 CCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGTTACAAG
1 TCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGCCACAAG
* *
22009933 TCTTTTCTCCTTGAA
1 TCTTATCTCCCTGAA
22009948 ATTACATTGG
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
44 49 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.31
Consensus pattern (44 bp):
TCTTATCTCCCTGAAGTTGCAGCGGAGTAGATCGAAGCCACAAG
Found at i:22010402 original size:23 final size:23
Alignment explanation
Indices: 22010372--22010419 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
22010362 CACAAGGTGG
22010372 CCCAAATTCAAGTTTCCAGAAAC
1 CCCAAATTCAAGTTTCCAGAAAC
22010395 CCCAAATTCAAGTTTCCAGAAAC
1 CCCAAATTCAAGTTTCCAGAAAC
22010418 CC
1 CC
22010420 TTAGGGTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.33, G:0.08, T:0.21
Consensus pattern (23 bp):
CCCAAATTCAAGTTTCCAGAAAC
Found at i:22011471 original size:24 final size:25
Alignment explanation
Indices: 22011435--22011486 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
22011425 ATTGTTTAAA
*
22011435 TTTATCATATATTATCATTTTAAGT
1 TTTATCATATATTATCATTCTAAGT
* *
22011460 TTTAT-ATGTATTATTATTCTAAGT
1 TTTATCATATATTATCATTCTAAGT
22011484 TTT
1 TTT
22011487 CATGTGTAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
24 19 0.79
25 5 0.21
ACGTcount: A:0.29, C:0.06, G:0.06, T:0.60
Consensus pattern (25 bp):
TTTATCATATATTATCATTCTAAGT
Found at i:22011550 original size:24 final size:23
Alignment explanation
Indices: 22011495--22011550 Score: 55
Period size: 23 Copynumber: 2.4 Consensus size: 23
22011485 TTCATGTGTA
*
22011495 ATTACTTT-TTTTAATTTATCGT
1 ATTATTTTATTTTAATTTATCGT
22011517 A-TATTATTATTTTAATTTCCATC-T
1 ATTATT-TTATTTTAATTT--ATCGT
22011541 ATTATTTTAT
1 ATTATTTTAT
22011551 ATAGTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 8
0.76 0.03 0.22
Matches are distributed among these distances:
21 3 0.11
22 3 0.11
23 9 0.32
24 6 0.21
25 7 0.25
ACGTcount: A:0.27, C:0.09, G:0.02, T:0.62
Consensus pattern (23 bp):
ATTATTTTATTTTAATTTATCGT
Found at i:22018578 original size:50 final size:50
Alignment explanation
Indices: 22018499--22018670 Score: 247
Period size: 50 Copynumber: 3.4 Consensus size: 50
22018489 TATCCTAGAT
** * * *
22018499 ATGGTCTTACATGGGAGTTCTCGTATCGGTGTCC-ATGCCATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTG-CCAACGCCATGTCCCAAAC
** *
22018549 ATGGTCTTACGGGGGACCTCTCATCTCGGTGCCAACGCGATGTCCCAAAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
*
22018599 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAGAC
1 ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
22018649 ATGGTCTTACATGGGACCTCTC
1 ATGGTCTTACATGGGACCTCTC
22018671 GTAATCTCAA
Statistics
Matches: 109, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
49 2 0.02
50 107 0.98
ACGTcount: A:0.20, C:0.30, G:0.24, T:0.26
Consensus pattern (50 bp):
ATGGTCTTACATGGGACCTCTCATCTCGGTGCCAACGCCATGTCCCAAAC
Found at i:22022967 original size:168 final size:170
Alignment explanation
Indices: 22022672--22023016 Score: 676
Period size: 168 Copynumber: 2.0 Consensus size: 170
22022662 TACTATAATG
22022672 ATATTTTAAATATTATAAATTAATATATTTTAACAAATTAAGAATTCCTATTATATAATTTATTT
1 ATATTTTAAATATTATAAATTAATATATTTTAACAAATTAAGAATTCCTATTATATAATTTATTT
22022737 TATTTATAATATACATTCATTCATGTAATGTGATACTAGTAGGAATGCAACCTAACTTCGCTTCA
66 TATTTATAATATACATTCATTCATGTAATGTGATACTAGTAGGAATGCAACCTAACTTCGCTTCA
22022802 GGCACAACCAATTTAATTACTAAAAAAAATTTAGTTACTA
131 GGCACAACCAATTTAATTACTAAAAAAAATTTAGTTACTA
22022842 ATATTTT-AATATTAT-AATTAATATATTTTAACAAATTAAGAATTCCTATTATATAATTTATTT
1 ATATTTTAAATATTATAAATTAATATATTTTAACAAATTAAGAATTCCTATTATATAATTTATTT
22022905 TATTTATAATATACATTCATTCATGTAATGTGATACTAGTAGGAATGCAACCTAACTTCGCTTCA
66 TATTTATAATATACATTCATTCATGTAATGTGATACTAGTAGGAATGCAACCTAACTTCGCTTCA
22022970 GGCACAACCAATTTAATTACTAAAAAAAATTTAGTTACTA
131 GGCACAACCAATTTAATTACTAAAAAAAATTTAGTTACTA
22023010 ATATTTT
1 ATATTTT
22023017 TAACTTCGCT
Statistics
Matches: 175, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
168 160 0.91
169 8 0.05
170 7 0.04
ACGTcount: A:0.41, C:0.12, G:0.07, T:0.41
Consensus pattern (170 bp):
ATATTTTAAATATTATAAATTAATATATTTTAACAAATTAAGAATTCCTATTATATAATTTATTT
TATTTATAATATACATTCATTCATGTAATGTGATACTAGTAGGAATGCAACCTAACTTCGCTTCA
GGCACAACCAATTTAATTACTAAAAAAAATTTAGTTACTA
Found at i:22025052 original size:14 final size:14
Alignment explanation
Indices: 22025033--22025061 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
22025023 TTTTTTACTT
22025033 TGTTATATAGATTA
1 TGTTATATAGATTA
22025047 TGTTATATAGATTA
1 TGTTATATAGATTA
22025061 T
1 T
22025062 TATTTATCTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.14, T:0.52
Consensus pattern (14 bp):
TGTTATATAGATTA
Found at i:22036817 original size:31 final size:28
Alignment explanation
Indices: 22036742--22036822 Score: 83
Period size: 30 Copynumber: 2.7 Consensus size: 28
22036732 TTTAAATCAC
*
22036742 AAAATAGTATCTAAATTATATAATTTTTT
1 AAAATGGTATCTAAATTATAT-ATTTTTT
*
22036771 AAAATTGATATCTAAATTATAT-TTTGTTACCT
1 AAAA-TGGTATCTAAATTATATATTT-TT---T
22036803 AAAATGGTATCTAAATTATA
1 AAAATGGTATCTAAATTATA
22036823 CTTAGTTATT
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
28 3 0.07
29 6 0.14
30 15 0.34
31 15 0.34
32 5 0.11
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (28 bp):
AAAATGGTATCTAAATTATATATTTTTT
Found at i:22037419 original size:5 final size:5
Alignment explanation
Indices: 22037384--22037453 Score: 56
Period size: 5 Copynumber: 14.0 Consensus size: 5
22037374 AATGAAAAGT
* * * *
22037384 TTTAA TATAA TTAAA TTTGA TTT-T TTATAA TTTAA TTTAA TTTAA TTCT--
1 TTTAA TTTAA TTTAA TTTAA TTTAA TT-TAA TTTAA TTTAA TTTAA TT-TAA
22037433 TTTAA TTTAA TTTTAA TTTAA
1 TTTAA TTTAA -TTTAA TTTAA
22037454 AAGTACCATG
Statistics
Matches: 52, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
3 1 0.02
4 4 0.08
5 39 0.75
6 8 0.15
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.60
Consensus pattern (5 bp):
TTTAA
Found at i:22037420 original size:25 final size:24
Alignment explanation
Indices: 22037383--22037453 Score: 79
Period size: 25 Copynumber: 2.9 Consensus size: 24
22037373 AAATGAAAAG
* * *
22037383 TTTTAATATAATTAAATTTGATTT
1 TTTTAATTTAATTAAATTTAATTC
*
22037407 TTTATAATTTAATTTAATTTAATTC
1 TTT-TAATTTAATTAAATTTAATTC
*
22037432 TTTTAATTTAATTTTAATTTAA
1 TTTTAATTTAA-TTAAATTTAA
22037454 AAGTACCATG
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
24 11 0.27
25 30 0.73
ACGTcount: A:0.37, C:0.01, G:0.01, T:0.61
Consensus pattern (24 bp):
TTTTAATTTAATTAAATTTAATTC
Found at i:22037546 original size:31 final size:31
Alignment explanation
Indices: 22037511--22037573 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 31
22037501 GCTGAGGTAA
*
22037511 TTTGGGTAATAGAGTATAATTTAGGTACCAC
1 TTTGGGTAATAGAATATAATTTAGGTACCAC
* *
22037542 TTTGGGTAATATAATATAGTTTAGGTACCAC
1 TTTGGGTAATAGAATATAATTTAGGTACCAC
22037573 T
1 T
22037574 AGTAACTAAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.38
Consensus pattern (31 bp):
TTTGGGTAATAGAATATAATTTAGGTACCAC
Found at i:22037672 original size:22 final size:20
Alignment explanation
Indices: 22037629--22037668 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
22037619 ATAACTTAGG
22037629 GTACCACTTGTGATAAAAAA
1 GTACCACTTGTGATAAAAAA
22037649 GTACCACTTGTGATAAAAAA
1 GTACCACTTGTGATAAAAAA
22037669 AAGTTTAGAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.45, C:0.15, G:0.15, T:0.25
Consensus pattern (20 bp):
GTACCACTTGTGATAAAAAA
Found at i:22043453 original size:29 final size:29
Alignment explanation
Indices: 22043316--22043653 Score: 224
Period size: 29 Copynumber: 11.8 Consensus size: 29
22043306 TAAAGTGAGA
* * *
22043316 CTTTGTAGTTATCTCTGTTAAAAGTAAGT
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
** *
22043345 CTTTGTGGCTATCTCTACTAAAATGAAGT
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* * * **
22043374 CTTTATGGCTATATATACTAAAAGGAAGT
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
*
22043403 CTTTGTGGCTATCTCTGCTAAAAGGAAGT
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* * *
22043432 CTTTGTGGCGATCTTTGTT-AAA-GAAAT
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* * * * * * *
22043459 CCCTTGTTGTTATCCCTATTAAAAGAAATT
1 -CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* * *
22043489 CTTTTGTGGCAATCTTTGTT-AAAGGAAGC
1 C-TTTGTGGCTATCTCTGTTAAAAGGAAGT
* **
22043518 CTTTGTGGCTATCCCTAATAAAAGGAA-T
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* * * * *
22043546 CCTTTGTAGCGATCTCTATT-AAAGGATGC
1 -CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* *
22043575 CTTCGTGGCTATCTCTGTTAAAAGGAAGC
1 CTTTGTGGCTATCTCTGTTAAAAGGAAGT
* *
22043604 CTTCT-TGGCAATCTCTGTT-AAAGGATG-
1 CTT-TGTGGCTATCTCTGTTAAAAGGAAGT
* *
22043631 CATTTGTGGTTATCTCAGTTAAA
1 C-TTTGTGGCTATCTCTGTTAAA
22043654 TGAATGCCTT
Statistics
Matches: 237, Mismatches: 60, Indels: 24
0.74 0.19 0.07
Matches are distributed among these distances:
27 6 0.03
28 69 0.29
29 148 0.62
30 14 0.06
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (29 bp):
CTTTGTGGCTATCTCTGTTAAAAGGAAGT
Found at i:22043540 original size:115 final size:114
Alignment explanation
Indices: 22043394--22043644 Score: 272
Period size: 115 Copynumber: 2.2 Consensus size: 114
22043384 ATATATACTA
* * ** * * *
22043394 AAAGGAAGTCTTTGTGGCTATCTCTGCTAAAAGGAAGT-CTTTGTGGCGATCTTTGTTAAAGAAA
1 AAAGGAAGCCTTTGTGGCTATCCCTAATAAAAGGAA-TCCTTTGTAGCGATCTCTATTAAAG-AA
* * ** * *
22043458 TCCCTT-GTTGTTATCCCTATTAAAAGAAATTCTTTTGTGGCAATCTTTGTT
64 TCCCTTCGTGGCTATCCCTATTAAAAGAAAGCCTTCT-TGGCAATCTCTGTT
* *
22043509 AAAGGAAGCCTTTGTGGCTATCCCTAATAAAAGGAATCCTTTGTAGCGATCTCTATTAAAGGATG
1 AAAGGAAGCCTTTGTGGCTATCCCTAATAAAAGGAATCCTTTGTAGCGATCTCTATTAAAGAATC
* * *
22043574 CCTTCGTGGCTATCTCTGTTAAAAGGAAGCCTTCTTGGCAATCTCTGTT
66 CCTTCGTGGCTATCCCTATTAAAAGAAAGCCTTCTTGGCAATCTCTGTT
* * *
22043623 AAAGGATGCATTTGTGGTTATC
1 AAAGGAAGCCTTTGTGGCTATC
22043645 TCAGTTAAAT
Statistics
Matches: 113, Mismatches: 21, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
114 39 0.35
115 74 0.65
ACGTcount: A:0.26, C:0.17, G:0.21, T:0.36
Consensus pattern (114 bp):
AAAGGAAGCCTTTGTGGCTATCCCTAATAAAAGGAATCCTTTGTAGCGATCTCTATTAAAGAATC
CCTTCGTGGCTATCCCTATTAAAAGAAAGCCTTCTTGGCAATCTCTGTT
Found at i:22043618 original size:57 final size:57
Alignment explanation
Indices: 22043326--22043653 Score: 228
Period size: 57 Copynumber: 5.7 Consensus size: 57
22043316 CTTTGTAGTT
* * * ** * * * *
22043326 ATCTCTGTTAAAAGTAAGTCTTTGTGGCTATCTCTACTAAAATGAAGTCTTTATGGCT
1 ATCTCTGTT-AAAGGATGCCTTTGTGGCTATCTCTGTTAAAAGGAAGCCTTTGTGGCA
* * * * * * * * *
22043384 ATATATACTAAAAGGAAGTCTTTGTGGCTATCTCTGCTAAAAGGAAGTCTTTGTGGCG
1 ATCTCT-GTTAAAGGATGCCTTTGTGGCTATCTCTGTTAAAAGGAAGCCTTTGTGGCA
* * * * * * * * * *
22043442 ATCTTTGTTAAAGAAAT-CCCTTGTTGTTATCCCTATTAAAAGAAATTCTTTTGTGGCA
1 ATCTCTGTTAAAG-GATGCCTTTGTGGCTATCTCTGTTAAAAGGAA-GCCTTTGTGGCA
* * * ** * * *
22043500 ATCTTTGTTAAAGGAAGCCTTTGTGGCTATCCCTAATAAAAGGAATCCTTTGTAGCG
1 ATCTCTGTTAAAGGATGCCTTTGTGGCTATCTCTGTTAAAAGGAAGCCTTTGTGGCA
* *
22043557 ATCTCTATTAAAGGATGCCTTCGTGGCTATCTCTGTTAAAAGGAAGCCTTCT-TGGCA
1 ATCTCTGTTAAAGGATGCCTTTGTGGCTATCTCTGTTAAAAGGAAGCCTT-TGTGGCA
* * *
22043614 ATCTCTGTTAAAGGATGCATTTGTGGTTATCTCAGTTAAA
1 ATCTCTGTTAAAGGATGCCTTTGTGGCTATCTCTGTTAAA
22043654 TGAATGCCTT
Statistics
Matches: 213, Mismatches: 52, Indels: 11
0.77 0.19 0.04
Matches are distributed among these distances:
57 115 0.54
58 97 0.46
59 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.37
Consensus pattern (57 bp):
ATCTCTGTTAAAGGATGCCTTTGTGGCTATCTCTGTTAAAAGGAAGCCTTTGTGGCA
Found at i:22056787 original size:16 final size:17
Alignment explanation
Indices: 22056758--22056790 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
22056748 GACACATCAA
*
22056758 CAAATAATTTAAAAATT
1 CAAATAATTCAAAAATT
22056775 CAAA-AATTCAAAAATT
1 CAAATAATTCAAAAATT
22056791 TTATAAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (17 bp):
CAAATAATTCAAAAATT
Found at i:22058571 original size:21 final size:22
Alignment explanation
Indices: 22058547--22058593 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
22058537 TACAGGGAGG
*
22058547 AAAAAGCTAACTATAGGGA-TA
1 AAAAAGATAACTATAGGGACTA
* *
22058568 AAAAATATAATTATAGGGACTA
1 AAAAAGATAACTATAGGGACTA
22058590 AAAA
1 AAAA
22058594 TTCATATTAC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 16 0.73
22 6 0.27
ACGTcount: A:0.57, C:0.06, G:0.15, T:0.21
Consensus pattern (22 bp):
AAAAAGATAACTATAGGGACTA
Found at i:22058775 original size:56 final size:53
Alignment explanation
Indices: 22058711--22058856 Score: 185
Period size: 48 Copynumber: 2.8 Consensus size: 53
22058701 AGTTACGTAT
22058711 GAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATAATATCCTATTAA
1 GAATCAAATTACTAAAAGATAATATCCCATAATAATATCC--T-ATATCCTATTAA
* *
22058767 GAATCAAATTACTAAGAGATAATAT-CC-T-ATAATATCC--TATCCTATTAT
1 GAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATATCCTATTAA
* * *
22058815 GAATCAATTTGCTAAAAGATAATATCCTATAATAATATCCTA
1 GAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTA
22058857 ACACCCCCTC
Statistics
Matches: 79, Mismatches: 6, Indels: 13
0.81 0.06 0.13
Matches are distributed among these distances:
48 32 0.41
49 1 0.01
50 1 0.01
51 9 0.11
53 9 0.11
54 1 0.01
55 2 0.03
56 24 0.30
ACGTcount: A:0.45, C:0.16, G:0.05, T:0.34
Consensus pattern (53 bp):
GAATCAAATTACTAAAAGATAATATCCCATAATAATATCCTATATCCTATTAA
Found at i:22062670 original size:18 final size:18
Alignment explanation
Indices: 22062649--22062687 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
22062639 ATGAAGTCGG
22062649 TCATGCTCATGACATTGT
1 TCATGCTCATGACATTGT
22062667 TCATGCTCATGACATTGT
1 TCATGCTCATGACATTGT
22062685 TCA
1 TCA
22062688 AGCATCTTCC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.23, G:0.15, T:0.38
Consensus pattern (18 bp):
TCATGCTCATGACATTGT
Found at i:22063458 original size:43 final size:43
Alignment explanation
Indices: 22063396--22063499 Score: 172
Period size: 43 Copynumber: 2.4 Consensus size: 43
22063386 ATATTCCATA
* *
22063396 ATAATATCTTATAATATCCTATTAGGAATCAATTTGCTAAGAG
1 ATAATATCCTATAATATCCTATTAGGAATCAATTTGCTAAAAG
*
22063439 TTAATATCCTATAATATCCTATTAGGAATCAATTTGCTAAAAG
1 ATAATATCCTATAATATCCTATTAGGAATCAATTTGCTAAAAG
*
22063482 ATAATATCCCATAATATC
1 ATAATATCCTATAATATC
22063500 TTAACATGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 56 1.00
ACGTcount: A:0.40, C:0.14, G:0.09, T:0.37
Consensus pattern (43 bp):
ATAATATCCTATAATATCCTATTAGGAATCAATTTGCTAAAAG
Found at i:22063711 original size:7 final size:7
Alignment explanation
Indices: 22063701--22063729 Score: 58
Period size: 7 Copynumber: 4.1 Consensus size: 7
22063691 TTTTAGATTT
22063701 ACTTTGG
1 ACTTTGG
22063708 ACTTTGG
1 ACTTTGG
22063715 ACTTTGG
1 ACTTTGG
22063722 ACTTTGG
1 ACTTTGG
22063729 A
1 A
22063730 GATGAAAGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.17, C:0.14, G:0.28, T:0.41
Consensus pattern (7 bp):
ACTTTGG
Found at i:22070640 original size:14 final size:15
Alignment explanation
Indices: 22070621--22070661 Score: 57
Period size: 14 Copynumber: 2.7 Consensus size: 15
22070611 AAGTTTTATT
22070621 TTTATTTTTATTTA-
1 TTTATTTTTATTTAG
*
22070635 TTTATTTTTACTTAG
1 TTTATTTTTATTTAG
22070650 TTTAATTTTTAT
1 TTT-ATTTTTAT
22070662 GTAAATATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
14 13 0.57
15 3 0.13
16 7 0.30
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTATTTTTATTTAG
Found at i:22077235 original size:14 final size:14
Alignment explanation
Indices: 22077216--22077254 Score: 60
Period size: 14 Copynumber: 2.8 Consensus size: 14
22077206 TGATTGCCAA
22077216 TAAAATGTTTTCTG
1 TAAAATGTTTTCTG
*
22077230 TAAAATGATTTCTG
1 TAAAATGTTTTCTG
*
22077244 GAAAATGTTTT
1 TAAAATGTTTT
22077255 ACTTTTTTGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.33, C:0.05, G:0.15, T:0.46
Consensus pattern (14 bp):
TAAAATGTTTTCTG
Found at i:22077294 original size:14 final size:15
Alignment explanation
Indices: 22077257--22077296 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
22077247 AATGTTTTAC
22077257 TTTTTTGTAAAATAA
1 TTTTTTGTAAAATAA
**
22077272 TTTACTGTAAAAT-A
1 TTTTTTGTAAAATAA
22077286 TTTTTTGTAAA
1 TTTTTTGTAAA
22077297 TTTCCAGCGT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 10 0.48
15 11 0.52
ACGTcount: A:0.38, C:0.03, G:0.07, T:0.53
Consensus pattern (15 bp):
TTTTTTGTAAAATAA
Found at i:22078697 original size:21 final size:21
Alignment explanation
Indices: 22078668--22078708 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
22078658 AGGATTGTTA
*
22078668 TGTGTTGCTGTTACGAGCATC
1 TGTGCTGCTGTTACGAGCATC
22078689 TGTGCTGCTGTTACGAGCAT
1 TGTGCTGCTGTTACGAGCAT
22078709 TTTTTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.15, C:0.20, G:0.29, T:0.37
Consensus pattern (21 bp):
TGTGCTGCTGTTACGAGCATC
Found at i:22080117 original size:20 final size:21
Alignment explanation
Indices: 22080066--22080123 Score: 63
Period size: 18 Copynumber: 3.0 Consensus size: 21
22080056 AAATCATTGC
22080066 AATATATGTAAAAA-TAATTT
1 AATATATGTAAAAATTAATTT
* *
22080086 AA-A-ATATAAAAATTTA-TT
1 AATATATGTAAAAATTAATTT
22080104 AATATATGTAAAAA-TAATTT
1 AATATATGTAAAAATTAATTT
22080124 TTTCGGAAAA
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
18 12 0.40
19 6 0.20
20 12 0.40
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (21 bp):
AATATATGTAAAAATTAATTT
Found at i:22082389 original size:49 final size:48
Alignment explanation
Indices: 22082293--22082389 Score: 149
Period size: 48 Copynumber: 2.0 Consensus size: 48
22082283 TTTCTTTGCT
* *
22082293 TAAAAACACCTAAGTCAGCCTAACTTGCAATGATAACGAATTCAACAG
1 TAAAAACACCTAAGTCAGCCTAACTCGCAATGATAAAGAATTCAACAG
* *
22082341 TAAAAACACCTAAGTCAGCTTAATCTCGCAATGATAAAGGATTCAACAG
1 TAAAAACACCTAAGTCAGCCTAA-CTCGCAATGATAAAGAATTCAACAG
22082390 AATTCCATCA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
48 22 0.50
49 22 0.50
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.22
Consensus pattern (48 bp):
TAAAAACACCTAAGTCAGCCTAACTCGCAATGATAAAGAATTCAACAG
Found at i:22082642 original size:36 final size:36
Alignment explanation
Indices: 22082583--22082653 Score: 108
Period size: 36 Copynumber: 2.0 Consensus size: 36
22082573 ATCAAGGGCT
22082583 ACAATTAAAAGCTGCATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGCATACAATTAGAACTCTAAGAC
* *
22082619 ACAATTAGAAA-CTGTATATAATTAGAACTCTAAGA
1 ACAATTA-AAAGCTGCATACAATTAGAACTCTAAGA
22082654 TTTTATAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 29 0.91
37 3 0.09
ACGTcount: A:0.48, C:0.15, G:0.11, T:0.25
Consensus pattern (36 bp):
ACAATTAAAAGCTGCATACAATTAGAACTCTAAGAC
Found at i:22083437 original size:51 final size:51
Alignment explanation
Indices: 22083381--22083483 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 51
22083371 CAAGTCATTC
*
22083381 TTCTCTTGCCAATCTTTTGCGAATCGATAGGCTACCGGATTTGGTCCTGTA
1 TTCTCTTACCAATCTTTTGCGAATCGATAGGCTACCGGATTTGGTCCTGTA
* **
22083432 TTCTCTTACTAATCTTTTGCGAATCGATAGGCTGTCGGATTTGGTCCTGTA
1 TTCTCTTACCAATCTTTTGCGAATCGATAGGCTACCGGATTTGGTCCTGTA
22083483 T
1 T
22083484 AATGGGTCAC
Statistics
Matches: 48, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.17, C:0.21, G:0.21, T:0.40
Consensus pattern (51 bp):
TTCTCTTACCAATCTTTTGCGAATCGATAGGCTACCGGATTTGGTCCTGTA
Found at i:22086640 original size:36 final size:36
Alignment explanation
Indices: 22086600--22086673 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
22086590 GCTTTGGAGA
22086600 AAAGTTTGAGTGAACACTCTCAAAATTCTTATTAAC
1 AAAGTTTGAGTGAACACTCTCAAAATTCTTATTAAC
22086636 AAAGTTTGAGTGAACACTCTCAAAATTCTTATTAAC
1 AAAGTTTGAGTGAACACTCTCAAAATTCTTATTAAC
22086672 AA
1 AA
22086674 CTGAATGCCT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (36 bp):
AAAGTTTGAGTGAACACTCTCAAAATTCTTATTAAC
Found at i:22086780 original size:36 final size:36
Alignment explanation
Indices: 22086740--22086810 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 36
22086730 ATCAAGGGCT
*
22086740 ACAATTAAAAGTTGTATACAATTAGAACTCTAAGAC
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
*
22086776 ACAATTAGAAGCTGTATACAATTAGAACTCTAAGA
1 ACAATTAAAAGCTGTATACAATTAGAACTCTAAGA
22086811 TTTTATAATC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.14, G:0.13, T:0.27
Consensus pattern (36 bp):
ACAATTAAAAGCTGTATACAATTAGAACTCTAAGAC
Found at i:22086781 original size:19 final size:19
Alignment explanation
Indices: 22086757--22086810 Score: 60
Period size: 17 Copynumber: 2.9 Consensus size: 19
22086747 AAAGTTGTAT
22086757 ACAATTAGAACTCTAAGAC
1 ACAATTAGAACTCTAAGAC
* *
22086776 ACAATTAGAA-GCT--GTAT
1 ACAATTAGAACTCTAAG-AC
22086793 ACAATTAGAACTCTAAGA
1 ACAATTAGAACTCTAAGA
22086811 TTTTATAATC
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 4 0.14
19 11 0.39
20 1 0.04
ACGTcount: A:0.46, C:0.17, G:0.13, T:0.24
Consensus pattern (19 bp):
ACAATTAGAACTCTAAGAC
Found at i:22086798 original size:17 final size:17
Alignment explanation
Indices: 22086739--22086802 Score: 58
Period size: 17 Copynumber: 3.6 Consensus size: 17
22086729 CATCAAGGGC
* *
22086739 TACAATTAAAAGTTGTA
1 TACAATTAGAAGCTGTA
*
22086756 TACAATTAGAA-CTCTAAGA
1 TACAATTAGAAGCTGT---A
*
22086775 CACAATTAGAAGCTGTA
1 TACAATTAGAAGCTGTA
22086792 TACAATTAGAA
1 TACAATTAGAA
22086803 CTCTAAGATT
Statistics
Matches: 37, Mismatches: 6, Indels: 8
0.73 0.12 0.16
Matches are distributed among these distances:
16 2 0.05
17 21 0.57
19 11 0.30
20 3 0.08
ACGTcount: A:0.47, C:0.12, G:0.12, T:0.28
Consensus pattern (17 bp):
TACAATTAGAAGCTGTA
Found at i:22092918 original size:58 final size:59
Alignment explanation
Indices: 22092844--22093015 Score: 195
Period size: 58 Copynumber: 2.9 Consensus size: 59
22092834 TTGTTATTAA
* * * *
22092844 ATTTTAACATGATTATTATTAAATATAATTTAATAAAAATAATAATA-AATTTAATCAT
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAATATAATTTAATAAC
* * * *
22092902 ATTTTAATATAATTATTATCAAAAACAATTTAATAAAAATGATAATATATAATTTAATAAC
1 ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAAT-A-ATATAATTTAATAAC
* *
22092963 ATTCTTAATATAATTATTATTAAAATATGAA-TTAATAAAAATCATAACATAAT
1 ATT-TTAATATAATTATTATT-AAATAT-AATTTAATAAAAATAATAATATAAT
22093016 CTCATGGGAT
Statistics
Matches: 95, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
58 37 0.39
59 1 0.01
60 3 0.03
61 18 0.19
62 17 0.18
63 17 0.18
64 2 0.02
ACGTcount: A:0.53, C:0.05, G:0.02, T:0.41
Consensus pattern (59 bp):
ATTTTAATATAATTATTATTAAATATAATTTAATAAAAATAATAATATAATTTAATAAC
Found at i:22095726 original size:143 final size:147
Alignment explanation
Indices: 22095541--22095810 Score: 311
Period size: 147 Copynumber: 1.9 Consensus size: 147
22095531 TCGTTTTGCC
* * * *** *
22095541 AATGGTATTAGTGGCGTTTTTTTGGAAATGCCACAAGCTTGAGTTAAATG-T-C-G-TTTGACTT
1 AATGGTATTAGTGGCGTTTTTTTGAAAACGCCACAAGCTTGAGGTAAATGTTGCTGAAGCGACTG
* * * *
22095602 CG-TTTGATCTTATATTTAGTGGCGCTT-CACTTAAAACGCCGCAACATTGTTCTAACATTTATA
66 CGTTTTGAT-TTATAGTTAGTGGCGCTTGAAC-TAAAACGCCGCAAAAATGTTCTAACATTTATA
22095665 GAAACACTGCCGTTTTTTA
129 GAAACACTGCCGTTTTTTA
* ** * *
22095684 AATGTTATTAGTGGCGATTTTTTT-AAAACGCCACGGGTTTGAGGTAAGTGTTGCTGAAGCGACT
1 AATGGTATTAGTGGCG-TTTTTTTGAAAACGCCACAAGCTTGAGGTAAATGTTGCTGAAGCGACT
*
22095748 GCGTTTTGATTTATAGTTAGTGGCGCTTGAACTAAAACGCCGCAAAAATGTTTTAACATTTAT
65 GCGTTTTGATTTATAGTTAGTGGCGCTTGAACTAAAACGCCGCAAAAATGTTCTAACATTTAT
22095811 CTATACGAGG
Statistics
Matches: 103, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
143 34 0.33
144 8 0.08
145 1 0.01
146 1 0.01
147 51 0.50
148 8 0.08
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (147 bp):
AATGGTATTAGTGGCGTTTTTTTGAAAACGCCACAAGCTTGAGGTAAATGTTGCTGAAGCGACTG
CGTTTTGATTTATAGTTAGTGGCGCTTGAACTAAAACGCCGCAAAAATGTTCTAACATTTATAGA
AACACTGCCGTTTTTTA
Found at i:22095824 original size:147 final size:146
Alignment explanation
Indices: 22095604--22095939 Score: 331
Period size: 146 Copynumber: 2.3 Consensus size: 146
22095594 TTTGACTTCG
* * * *
22095604 TTTGATCTTATATTTAGTGGCGCTTCACTTAAAACGCCGCAACATTGTTCTAACATTTATAGAAA
1 TTTGAT-TTATAGTTAGTGGCGCTTAACTTAAAACGCCGCAAAAATGTTCTAACATTTATAGAAA
* * * ** * * *
22095669 CACTGCCGTTTT-TTAAATGTTATTAGTGGCGATTT-TTTTAAAACGCCACGGGTTTGAGGTAAG
65 CACGGCCGTTTTGCT--ATATTATTAGTGGCG-TTTATTCAAAAACGCCACAGGTGTGAGCTAAG
* *
22095732 TGTTGCTGAAGCGACTGCGT
127 TGTTGATGAAACGACTGCGT
* ** *
22095752 TTTGATTTATAGTTAGTGGCGCTTGAAC-TAAAACGCCGCAAAAATGTTTTAACATTTATCTATA
1 TTTGATTTATAGTTAGTGGCGCTT-AACTTAAAACGCCGCAAAAATGTTCTAACATTTATAGAAA
* * **
22095816 CGA-GGCCGTTTTGCTGTATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTGTGCGCTATTTG
65 C-ACGGCCGTTTTGCTATATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTGTGAGCTAAGTG
22095880 TTGATGAAACGACTGCGT
129 TTGATGAAACGACTGCGT
* * * * *
22095898 TTCGACTTATAGTTAGTGGTGCTT-ATTTATAAACACCGCAAA
1 TTTGATTTATAGTTAGTGGCGCTTAACTTA-AAACGCCGCAAA
22095940 TGGTTAATTT
Statistics
Matches: 155, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
144 1 0.01
145 5 0.03
146 83 0.54
147 56 0.36
148 10 0.06
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.36
Consensus pattern (146 bp):
TTTGATTTATAGTTAGTGGCGCTTAACTTAAAACGCCGCAAAAATGTTCTAACATTTATAGAAAC
ACGGCCGTTTTGCTATATTATTAGTGGCGTTTATTCAAAAACGCCACAGGTGTGAGCTAAGTGTT
GATGAAACGACTGCGT
Found at i:22096196 original size:34 final size:34
Alignment explanation
Indices: 22096152--22096219 Score: 102
Period size: 34 Copynumber: 2.0 Consensus size: 34
22096142 CTGCATCACA
22096152 TTCTCCGTCCGTCT-TCGGTGCCACAACCATCGGT
1 TTCTCCGTCCGTCTCT-GGTGCCACAACCATCGGT
* *
22096186 TTCTCTGTCCGTCTCTGGTGCCGCAACCATCGGT
1 TTCTCCGTCCGTCTCTGGTGCCACAACCATCGGT
22096220 AAGTTCGTCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
34 30 0.97
35 1 0.03
ACGTcount: A:0.10, C:0.37, G:0.22, T:0.31
Consensus pattern (34 bp):
TTCTCCGTCCGTCTCTGGTGCCACAACCATCGGT
Found at i:22109464 original size:12 final size:12
Alignment explanation
Indices: 22109447--22109474 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
22109437 GCAGAGGCCA
22109447 CAGCGAGAGAAG
1 CAGCGAGAGAAG
22109459 CAGCGAGAGAAG
1 CAGCGAGAGAAG
22109471 CAGC
1 CAGC
22109475 AATAGAAGTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.39, C:0.21, G:0.39, T:0.00
Consensus pattern (12 bp):
CAGCGAGAGAAG
Found at i:22109990 original size:42 final size:43
Alignment explanation
Indices: 22109850--22110033 Score: 110
Period size: 43 Copynumber: 4.3 Consensus size: 43
22109840 AAATCCTAAA
* * * * *
22109850 ATTAGTGGCGTTTTTTAAAAAAGCGCCGCTAAA-AGTCA-TATCA
1 ATTAGCGGCGTTTTTGAAACAAGCGCCGCTAAAGA-ACACTA-CT
* * * * *
22109893 AATAGTGGCGTTTGTGAAATAAGCGCCGCTAAATAACACTACT
1 ATTAGCGGCGTTTTTGAAACAAGCGCCGCTAAAGAACACTACT
* * * * *
22109936 ATTCGCGACGTTTTTG-AACAAGCGCTGCTATAGAACATTACT
1 ATTAGCGGCGTTTTTGAAACAAGCGCCGCTAAAGAACACTACT
* ***
22109978 TTTAGCGGCGTTTTCTTCCA-AAGCGCCGCTAAAGAACA-TGATCT
1 ATTAGCGGCGTTTT-TGAAACAAGCGCCGCTAAAGAACACT-A-CT
22110022 -TTAGCGGCGTTT
1 ATTAGCGGCGTTT
22110034 ATTTTCTTAG
Statistics
Matches: 112, Mismatches: 23, Indels: 12
0.76 0.16 0.08
Matches are distributed among these distances:
42 33 0.29
43 73 0.65
44 6 0.05
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (43 bp):
ATTAGCGGCGTTTTTGAAACAAGCGCCGCTAAAGAACACTACT
Found at i:22110014 original size:43 final size:42
Alignment explanation
Indices: 22109955--22110079 Score: 153
Period size: 43 Copynumber: 2.9 Consensus size: 42
22109945 GTTTTTGAAC
* * *
22109955 AAGCGCTGCTATAGAACATTA-CTTTTAGCGGCGTTTTCTTCCA
1 AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT-TTCCA
* *
22109998 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTATTTTCT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTT-TTTCCA
* *
22110041 TAGCGCCGGTAAAGAACATGATCTTTAGCGGCGTTTTTT
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
22110080 TCTGTAAGCG
Statistics
Matches: 73, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
42 3 0.04
43 68 0.93
44 2 0.03
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.34
Consensus pattern (42 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCCA
Found at i:22111390 original size:20 final size:21
Alignment explanation
Indices: 22111367--22111414 Score: 71
Period size: 21 Copynumber: 2.3 Consensus size: 21
22111357 ACATTTTATC
22111367 AATACTTGGT-AAAAGGTATT
1 AATACTTGGTGAAAAGGTATT
**
22111387 AATACTTTTTGAAAAGGTATT
1 AATACTTGGTGAAAAGGTATT
22111408 AATACTT
1 AATACTT
22111415 TTTATAATTG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.40, C:0.06, G:0.15, T:0.40
Consensus pattern (21 bp):
AATACTTGGTGAAAAGGTATT
Found at i:22111403 original size:21 final size:21
Alignment explanation
Indices: 22111377--22111417 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
22111367 AATACTTGGT
22111377 AAAAGGTATTAATACTTTTTG
1 AAAAGGTATTAATACTTTTTG
22111398 AAAAGGTATTAATACTTTTT
1 AAAAGGTATTAATACTTTTT
22111418 ATAATTGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.05, G:0.12, T:0.44
Consensus pattern (21 bp):
AAAAGGTATTAATACTTTTTG
Found at i:22111664 original size:20 final size:20
Alignment explanation
Indices: 22111639--22111681 Score: 68
Period size: 20 Copynumber: 2.1 Consensus size: 20
22111629 GGGAGCAATT
* *
22111639 TTTCAATTGATTTAAAAATG
1 TTTCAATTGAGTTAAAAAAG
22111659 TTTCAATTGAGTTAAAAAAG
1 TTTCAATTGAGTTAAAAAAG
22111679 TTT
1 TTT
22111682 AAACCATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.40, C:0.05, G:0.12, T:0.44
Consensus pattern (20 bp):
TTTCAATTGAGTTAAAAAAG
Found at i:22117801 original size:18 final size:18
Alignment explanation
Indices: 22117774--22117813 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
22117764 ATATAAAAAA
*
22117774 ATTTAATTTTTATAAA-T
1 ATTTAATTTTTAAAAATT
22117791 ATTTGAATTTTTAAAAATT
1 ATTT-AATTTTTAAAAATT
22117810 ATTT
1 ATTT
22117814 TGAAACTTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 4 0.20
18 11 0.55
19 5 0.25
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (18 bp):
ATTTAATTTTTAAAAATT
Found at i:22119794 original size:22 final size:21
Alignment explanation
Indices: 22119756--22119796 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
22119746 TAGACATAAA
**
22119756 TATTTTAAAAATTATATTTAT
1 TATTTTAAAAAAAATATTTAT
22119777 TATTTTATAAAAAAATATTT
1 TATTTTA-AAAAAAATATTT
22119797 TAATAAGTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
TATTTTAAAAAAAATATTTAT
Found at i:22120023 original size:30 final size:30
Alignment explanation
Indices: 22119989--22120047 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
22119979 AAATATAAAA
* *
22119989 TTATACATGAATTTTTTATTTTA-TTCAATT
1 TTATACATGAA-ATTTTAATTTAGTTCAATT
22120019 TTATACATGAAATTTTAATTTAGTTCAAT
1 TTATACATGAAATTTTAATTTAGTTCAAT
22120048 GTTCACAAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 9 0.35
30 17 0.65
ACGTcount: A:0.34, C:0.07, G:0.05, T:0.54
Consensus pattern (30 bp):
TTATACATGAAATTTTAATTTAGTTCAATT
Found at i:22121354 original size:27 final size:27
Alignment explanation
Indices: 22121285--22121391 Score: 69
Period size: 28 Copynumber: 3.9 Consensus size: 27
22121275 GCTTAAATTT
*
22121285 TATTTAAATATGAAT-A-ATTAATTTAA
1 TATTTAAATAT-AATAATATTTATTTAA
*
22121311 GCTCATTTAAATTTAATAATATTT-TTTAA
1 --T-ATTTAAATATAATAATATTTATTTAA
* *
22121340 TATTTCAAATATAATTATTTTTATTTAA
1 TATTT-AAATATAATAATATTTATTTAA
* *
22121368 TACTT-AATATTTATATATATTTAT
1 TATTTAAATA-TAATA-ATATTTAT
22121392 CATTAAATAC
Statistics
Matches: 63, Mismatches: 9, Indels: 14
0.73 0.10 0.16
Matches are distributed among these distances:
26 8 0.13
27 17 0.27
28 20 0.32
29 15 0.24
30 3 0.05
ACGTcount: A:0.41, C:0.04, G:0.02, T:0.53
Consensus pattern (27 bp):
TATTTAAATATAATAATATTTATTTAA
Found at i:22122860 original size:24 final size:24
Alignment explanation
Indices: 22122827--22122989 Score: 150
Period size: 25 Copynumber: 6.6 Consensus size: 24
22122817 TACATGTATA
22122827 CTCATACGAGCTGTAAACGGTAAG
1 CTCATACGAGCTGTAAACGGTAAG
* * *
22122851 CTCTTCCGAGCTGAATAACGGTAAG
1 CTCATACGAGCTGTA-AACGGTAAG
*
22122876 CTCATACGAGCTATAAATCAGG-AAG
1 CTCATACGAGCTGTAAA-C-GGTAAG
* * *
22122901 CTCATATGAGCTATAAATCGGGAAG
1 CTCATACGAGCTGTAAA-CGGTAAG
* * *
22122926 CTCATACGAGTTGCAAATCGGGAAG
1 CTCATACGAGCTGTAAA-CGGTAAG
*
22122951 CTCATACGAGCTGCAAATCGAG-AAG
1 CTCATACGAGCTGTAAA-CG-GTAAG
22122976 CTCATACGAGCTGT
1 CTCATACGAGCTGT
22122990 GGTGTGTCTG
Statistics
Matches: 120, Mismatches: 14, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
24 16 0.13
25 101 0.84
26 3 0.03
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (24 bp):
CTCATACGAGCTGTAAACGGTAAG
Found at i:22130306 original size:25 final size:24
Alignment explanation
Indices: 22130278--22130333 Score: 76
Period size: 25 Copynumber: 2.2 Consensus size: 24
22130268 AAGCTCTTCT
*
22130278 GAGCTGAATAGCGATAAGCTCATAC
1 GAGCTGAA-AGCGAGAAGCTCATAC
*
22130303 GAGCTAGAAATCGAGAAGCTCATAC
1 GAGCT-GAAAGCGAGAAGCTCATAC
22130328 GAGCTG
1 GAGCTG
22130334 TGGTGTGTCC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
24 1 0.04
25 24 0.86
26 3 0.11
ACGTcount: A:0.36, C:0.20, G:0.27, T:0.18
Consensus pattern (24 bp):
GAGCTGAAAGCGAGAAGCTCATAC
Found at i:22133051 original size:28 final size:25
Alignment explanation
Indices: 22133020--22133088 Score: 75
Period size: 27 Copynumber: 2.6 Consensus size: 25
22133010 ATTAACAAAT
22133020 ATTTTTATATTTTTATACTTTTTTAATA
1 ATTTTTATATTTTTAT--TTTTTTAA-A
* *
22133048 ATTTTAATGATTTTTATTTTTTTTAA
1 ATTTTTAT-ATTTTTATTTTTTTAAA
22133074 ATATTTTATATTTTT
1 AT-TTTTATATTTTT
22133089 TGAATTTCTA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 9 0.25
27 12 0.33
28 7 0.19
29 8 0.22
ACGTcount: A:0.28, C:0.01, G:0.01, T:0.70
Consensus pattern (25 bp):
ATTTTTATATTTTTATTTTTTTAAA
Found at i:22133089 original size:9 final size:9
Alignment explanation
Indices: 22133021--22133089 Score: 52
Period size: 9 Copynumber: 7.6 Consensus size: 9
22133011 TTAACAAATA
22133021 TTTTTATA-
1 TTTTTATAT
22133029 TTTTTATACT
1 TTTTTATA-T
*
22133039 TTTTTAATAA
1 TTTTT-ATAT
*
22133049 TTTTAATGA-
1 TTTTTAT-AT
*
22133058 TTTTTATTT
1 TTTTTATAT
*
22133067 TTTTTAAAT
1 TTTTTATAT
*
22133076 ATTTTATAT
1 TTTTTATAT
22133085 TTTTT
1 TTTTT
22133090 GAATTTCTAA
Statistics
Matches: 47, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
8 8 0.17
9 26 0.55
10 10 0.21
11 3 0.06
ACGTcount: A:0.26, C:0.01, G:0.01, T:0.71
Consensus pattern (9 bp):
TTTTTATAT
Found at i:22133089 original size:28 final size:29
Alignment explanation
Indices: 22133016--22133089 Score: 86
Period size: 28 Copynumber: 2.7 Consensus size: 29
22133006 TTAAATTAAC
22133016 AAATATTTT-TATATTTTTATACTTTTTT
1 AAATATTTTATATATTTTTATACTTTTTT
*
22133044 -AATAATTTTA-ATGATTTTTAT-TTTTTTT
1 AAAT-ATTTTATAT-ATTTTTATACTTTTTT
22133072 AAATATTTTATAT-TTTTT
1 AAATATTTTATATATTTTT
22133090 GAATTTCTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 11
0.77 0.02 0.21
Matches are distributed among these distances:
27 8 0.20
28 19 0.47
29 13 0.32
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (29 bp):
AAATATTTTATATATTTTTATACTTTTTT
Found at i:22135903 original size:25 final size:24
Alignment explanation
Indices: 22135875--22135942 Score: 91
Period size: 24 Copynumber: 2.8 Consensus size: 24
22135865 GTACATAAAT
22135875 GGGAAGCTCATGTGAGCCATGTAAC
1 GGGAAGCTCATGTGAGCCAT-TAAC
** *
22135900 GGGAAGCTCCGGAGAGCCATTAAC
1 GGGAAGCTCATGTGAGCCATTAAC
*
22135924 GGGAAGCTCATATGAGCCA
1 GGGAAGCTCATGTGAGCCA
22135943 ATTTTGGGAA
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
24 19 0.53
25 17 0.47
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.16
Consensus pattern (24 bp):
GGGAAGCTCATGTGAGCCATTAAC
Found at i:22135951 original size:24 final size:24
Alignment explanation
Indices: 22135875--22135981 Score: 81
Period size: 25 Copynumber: 4.4 Consensus size: 24
22135865 GTACATAAAT
* * *
22135875 GGGAAGCTCATGTGAGCCATGTAAC
1 GGGAAGCTCAAGTGAGCCA-ATATC
** * * *
22135900 GGGAAGCTCCGGAGAGCCATTAAC
1 GGGAAGCTCAAGTGAGCCAATATC
* *
22135924 GGGAAGCTCATA-TGAGCCAATTTT
1 GGGAAGCTCA-AGTGAGCCAATATC
*
22135948 GGGAAGGTTCAAGTGAGCCAATATC
1 GGGAA-GCTCAAGTGAGCCAATATC
22135973 GGGAAGCTC
1 GGGAAGCTC
22135982 TGGAGAGCCA
Statistics
Matches: 64, Mismatches: 15, Indels: 7
0.74 0.17 0.08
Matches are distributed among these distances:
24 29 0.45
25 35 0.55
ACGTcount: A:0.29, C:0.20, G:0.32, T:0.20
Consensus pattern (24 bp):
GGGAAGCTCAAGTGAGCCAATATC
Found at i:22136139 original size:24 final size:24
Alignment explanation
Indices: 22136106--22136158 Score: 70
Period size: 24 Copynumber: 2.2 Consensus size: 24
22136096 CACAACCAAT
* * *
22136106 CGGGATGCTCCGGAGAGCTATTAA
1 CGGGAAGCTCAGGAGAGCTAATAA
*
22136130 CGGGAAGCTCATGAGAGCTAATAA
1 CGGGAAGCTCAGGAGAGCTAATAA
22136154 CGGGA
1 CGGGA
22136159 TGCGCTTTCG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.34, T:0.17
Consensus pattern (24 bp):
CGGGAAGCTCAGGAGAGCTAATAA
Found at i:22140066 original size:32 final size:31
Alignment explanation
Indices: 22140029--22140091 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 31
22140019 CATTCAATGG
*
22140029 ACCATTC-AATACTAGGTGTTCACACCCAAAGA
1 ACCATTCAAATACGA-GTGTTCACA-CCAAAGA
*
22140061 ACCATTCAAATCCGAGTGTTCACACCAAAGA
1 ACCATTCAAATACGAGTGTTCACACCAAAGA
22140092 TCCTTCGGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 7 0.25
32 16 0.57
33 5 0.18
ACGTcount: A:0.38, C:0.29, G:0.13, T:0.21
Consensus pattern (31 bp):
ACCATTCAAATACGAGTGTTCACACCAAAGA
Found at i:22146074 original size:24 final size:24
Alignment explanation
Indices: 22145990--22146075 Score: 68
Period size: 25 Copynumber: 3.5 Consensus size: 24
22145980 TTCGGGAATA
*
22145990 CTCATACGAGCACATAAACAGGAAG
1 CTCATACGAGC-CATTAACAGGAAG
*** **
22146015 CTCACGTGAGCCATGTAATTGGAAG
1 CTCATACGAGCCAT-TAACAGGAAG
22146040 CTC-TGGA-GAGCCATTAACAGGAAG
1 CTCAT--ACGAGCCATTAACAGGAAG
22146064 CTCATACGAGCC
1 CTCATACGAGCC
22146076 GGTTTCGGGA
Statistics
Matches: 46, Mismatches: 10, Indels: 11
0.69 0.15 0.16
Matches are distributed among these distances:
23 1 0.02
24 19 0.41
25 26 0.57
ACGTcount: A:0.34, C:0.24, G:0.24, T:0.17
Consensus pattern (24 bp):
CTCATACGAGCCATTAACAGGAAG
Found at i:22146125 original size:24 final size:24
Alignment explanation
Indices: 22146035--22146125 Score: 60
Period size: 24 Copynumber: 3.8 Consensus size: 24
22146025 CCATGTAATT
* * *
22146035 GGAAGCTCTGGAGAGCCATTAACA
1 GGAAGCTCTAGAGAGCCAGTATCA
* * * *
22146059 GGAAGCTCATA-CGAGCCGGTTTCG
1 GGAAGCTC-TAGAGAGCCAGTATCA
* *
22146083 GGAAG-TTTCAGGTGAGCCAGTATCA
1 GGAAGCTCT-A-GAGAGCCAGTATCA
22146108 GGAAGCTCTAGAGAGCCA
1 GGAAGCTCTAGAGAGCCA
22146126 ATTAATCGGG
Statistics
Matches: 48, Mismatches: 14, Indels: 10
0.67 0.19 0.14
Matches are distributed among these distances:
22 1 0.02
23 2 0.04
24 27 0.56
25 16 0.33
26 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.32, T:0.19
Consensus pattern (24 bp):
GGAAGCTCTAGAGAGCCAGTATCA
Found at i:22148030 original size:25 final size:25
Alignment explanation
Indices: 22148001--22148179 Score: 78
Period size: 25 Copynumber: 7.6 Consensus size: 25
22147991 ATTCTATTTG
*
22148001 GCCTTTGTGGTGTATTTTGTATGTT
1 GCCTTTGTGGCGTATTTTGTATGTT
*
22148026 GCCTTTGTGGCGTACTTTG-ATAG-T
1 GCCTTTGTGGCGTATTTTGTAT-GTT
*
22148050 --CTTTGTGGTGTA-TTT-TAT-TT
1 GCCTTTGTGGCGTATTTTGTATGTT
* *
22148070 GACCTTTGTGACGTATTATGTATGTT
1 G-CCTTTGTGGCGTATTTTGTATGTT
* * * ** * * *
22148096 TCATTTATGGCAAACTCTG-A--TA
1 GCCTTTGTGGCGTATTTTGTATGTT
* * *
22148118 GCCTTTTGTGGCATATTCTG-A--TA
1 GCC-TTTGTGGCGTATTTTGTATGTT
* *
22148141 GCCTTTGTGGCGTATTCTATATGTT
1 GCCTTTGTGGCGTATTTTGTATGTT
22148166 GCCTTTGTGGCGTA
1 GCCTTTGTGGCGTA
22148180 CCCTGATAAG
Statistics
Matches: 118, Mismatches: 23, Indels: 26
0.71 0.14 0.16
Matches are distributed among these distances:
20 1 0.01
21 5 0.04
22 27 0.23
23 30 0.25
24 6 0.05
25 47 0.40
26 2 0.02
ACGTcount: A:0.15, C:0.14, G:0.24, T:0.47
Consensus pattern (25 bp):
GCCTTTGTGGCGTATTTTGTATGTT
Found at i:22148150 original size:22 final size:23
Alignment explanation
Indices: 22148111--22148158 Score: 80
Period size: 22 Copynumber: 2.1 Consensus size: 23
22148101 TATGGCAAAC
22148111 TCTGATAGCCTTTTGTGGCATAT
1 TCTGATAGCCTTTTGTGGCATAT
*
22148134 TCTGATAGCC-TTTGTGGCGTAT
1 TCTGATAGCCTTTTGTGGCATAT
22148156 TCT
1 TCT
22148159 ATATGTTGCC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 14 0.58
23 10 0.42
ACGTcount: A:0.15, C:0.19, G:0.23, T:0.44
Consensus pattern (23 bp):
TCTGATAGCCTTTTGTGGCATAT
Found at i:22148186 original size:70 final size:69
Alignment explanation
Indices: 22148001--22148187 Score: 187
Period size: 70 Copynumber: 2.7 Consensus size: 69
22147991 ATTCTATTTG
* * * * ** *
22148001 GCCTTTGTGGTGTATTTTGTATGTTGCCTTTGTGGCGTACTTTGATAGTCTTTGTGGTGTATTTT
1 GCCTTTGTGGCGTATTATGTATGTTGCCTTTGTGGCGTACTCTGATAGCCTTTGTGGCATATTTG
*
22148066 ATTT
66 ATTA
* * * * **
22148070 GACCTTTGTGACGTATTATGTATGTTTCATTTATGGCAAACTCTGATAGCCTTTTGTGGCATATT
1 G-CCTTTGTGGCGTATTATGTATGTTGCCTTTGTGGCGTACTCTGATAGCC-TTTGTGGCATATT
22148135 CTGA-TA
64 -TGATTA
* * *
22148141 GCCTTTGTGGCGTATTCTATATGTTGCCTTTGTGGCGTACCCTGATA
1 GCCTTTGTGGCGTATTATGTATGTTGCCTTTGTGGCGTACTCTGATA
22148188 AGTCTATGTT
Statistics
Matches: 92, Mismatches: 23, Indels: 5
0.77 0.19 0.04
Matches are distributed among these distances:
69 1 0.01
70 76 0.83
71 13 0.14
72 2 0.02
ACGTcount: A:0.16, C:0.15, G:0.24, T:0.46
Consensus pattern (69 bp):
GCCTTTGTGGCGTATTATGTATGTTGCCTTTGTGGCGTACTCTGATAGCCTTTGTGGCATATTTG
ATTA
Done.