Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 74 of 163
Found at i:24177739 original size:116 final size:116
Alignment explanation
Indices: 24177519--24177741 Score: 317
Period size: 116 Copynumber: 1.9 Consensus size: 116
24177509 TTATCGAAAT
* * * *
24177519 ACCCTCGATGGGTAAATTACCAAAATACCCTCGATGGGTAAATTATTGAAATACCCTCGATTGGT
1 ACCCTCGATGGGTAAAGTACCAAAATACCCTCGATAGGTAAATTACTGAAATACCCTCGATGGGT
*
24177584 AAATTATCGAAATACCCTCGATGGATAAAGTATCGAAATACCTTCGATGGG
66 AAATTATCGAAATACCCTCGATGGATAAAGTATCAAAATACCTTCGATGGG
**
24177635 ACCCTCGATGGGTAAAGTACTGAAATACCCTCGATAGGTAAATTACTGAAATACCCTCGATGGGT
1 ACCCTCGATGGGTAAAGTACCAAAATACCCTCGATAGGTAAATTACTGAAATACCCTCGATGGGT
* *
24177700 AAATTA-CTGAAATACCC-CTGATGGGTAAATTA-CTAAAATACC
66 AAATTATC-GAAATACCCTC-GATGGATAAAGTATC-AAAATACC
24177742 CCAAAAGGGT
Statistics
Matches: 95, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
115 3 0.03
116 92 0.97
ACGTcount: A:0.35, C:0.20, G:0.18, T:0.26
Consensus pattern (116 bp):
ACCCTCGATGGGTAAAGTACCAAAATACCCTCGATAGGTAAATTACTGAAATACCCTCGATGGGT
AAATTATCGAAATACCCTCGATGGATAAAGTATCAAAATACCTTCGATGGG
Found at i:24177743 original size:26 final size:26
Alignment explanation
Indices: 24177635--24177742 Score: 173
Period size: 26 Copynumber: 4.2 Consensus size: 26
24177625 CTTCGATGGG
*
24177635 ACCCTCGATGGGTAAAGTACTGAAAT
1 ACCCTCGATGGGTAAATTACTGAAAT
*
24177661 ACCCTCGATAGGTAAATTACTGAAAT
1 ACCCTCGATGGGTAAATTACTGAAAT
24177687 ACCCTCGATGGGTAAATTACTGAAAT
1 ACCCTCGATGGGTAAATTACTGAAAT
*
24177713 ACCC-CTGATGGGTAAATTACTAAAAT
1 ACCCTC-GATGGGTAAATTACTGAAAT
24177739 ACCC
1 ACCC
24177743 CAAAAGGGTA
Statistics
Matches: 77, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
25 1 0.01
26 76 0.99
ACGTcount: A:0.36, C:0.21, G:0.18, T:0.25
Consensus pattern (26 bp):
ACCCTCGATGGGTAAATTACTGAAAT
Found at i:24178519 original size:21 final size:22
Alignment explanation
Indices: 24178495--24178538 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
24178485 TACAAATAAG
24178495 TTTTCACA-ACAAACAC-TATTT
1 TTTTCA-AGACAAACACGTATTT
24178516 TTTTCAAGACAAACACGTATTT
1 TTTTCAAGACAAACACGTATTT
24178538 T
1 T
24178539 CAACTACAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 1 0.05
21 14 0.67
22 6 0.29
ACGTcount: A:0.36, C:0.20, G:0.05, T:0.39
Consensus pattern (22 bp):
TTTTCAAGACAAACACGTATTT
Found at i:24179154 original size:142 final size:146
Alignment explanation
Indices: 24178979--24179260 Score: 412
Period size: 146 Copynumber: 2.0 Consensus size: 146
24178969 TCCAAATCAC
* * * *
24178979 ATTTTATAGATCTATTATTAAGAAATGGGTTTTAGTTTT-AGTTTTTT-TGT-TT-TCTT-TTGT
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAAATTTTTTAT-TATTATCTTCTTGG
*
24179039 AAATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTCTTGTGTTCTACAAA
65 AAATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTCTTATGTTCTACAAA
24179104 TTCATGGAGAGAAGAGA
130 TTCATGGAGAGAAGAGA
24179121 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAAATTTTTTATTATTATCTTCTTGGA
1 ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAAATTTTTTATTATTATCTTCTTGGA
* * * * * *
24179186 AATTGATTGAGAGTTGAAAGTGTTGAGAAATGATTTTTTTTTCTTTCTTGTTATGTTGTAGAAAT
66 AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTCTTATGTTCTACAAAT
*
24179251 TGATGGAGAG
131 TCATGGAGAG
24179261 TAGAAGAGAA
Statistics
Matches: 123, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
142 37 0.30
143 8 0.07
144 3 0.02
145 4 0.03
146 71 0.58
ACGTcount: A:0.29, C:0.05, G:0.18, T:0.48
Consensus pattern (146 bp):
ATTTTACAGATCTATTATTAAGAAATGAGTTTTAGTTTTAAATTTTTTATTATTATCTTCTTGGA
AATTGATTGAGAGTTGAAACTGTTGAGAAATGAATTTTTATTCTTTCTTCTTATGTTCTACAAAT
TCATGGAGAGAAGAGA
Found at i:24179305 original size:26 final size:26
Alignment explanation
Indices: 24179275--24179327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
24179265 AGAGAATGAG
*
24179275 GAGTAAGATTAAAGTAAAAACAAGAT
1 GAGTAAGACTAAAGTAAAAACAAGAT
24179301 GAGTAAGACTAAAGTAAAAACAAGAT
1 GAGTAAGACTAAAGTAAAAACAAGAT
24179327 G
1 G
24179328 GAAACAGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.06, G:0.21, T:0.17
Consensus pattern (26 bp):
GAGTAAGACTAAAGTAAAAACAAGAT
Found at i:24203843 original size:25 final size:25
Alignment explanation
Indices: 24203809--24203858 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
24203799 GTGTCTCGAG
24203809 AATGAGTGGGGGAATGGCACAGGCT
1 AATGAGTGGGGGAATGGCACAGGCT
24203834 AATGAGTGGGGGAATGGCACAGGCT
1 AATGAGTGGGGGAATGGCACAGGCT
24203859 GCGAATCAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.28, C:0.12, G:0.44, T:0.16
Consensus pattern (25 bp):
AATGAGTGGGGGAATGGCACAGGCT
Found at i:24212753 original size:182 final size:181
Alignment explanation
Indices: 24212422--24212784 Score: 600
Period size: 182 Copynumber: 2.0 Consensus size: 181
24212412 ATAAAGCGTA
* * *
24212422 AATATAGTATTTTTGTGTGAATATTTGATGCTAAGATTTAAGAATAATTTATATGAATGAATGGT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
* * *
24212487 TAGTGACGTCACACTAGTTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
66 TAGCGACGTCACACCAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
*
24212552 GATTGGCGAATTGTCGGGCTCCACTAAGAATTTTAGAAATTTTAGTGGTTG
131 GATTGGCGAACTGTCGGGCTCCACTAAGAATTTTAGAAATTTTAGTGGTTG
* * *
24212603 AATATAGTTTTTTTGTGTGAATATATGATGCTAAGATTTGAGAATAAGTTGTATGAATGAATGAT
1 AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
*
24212668 TAGCGATGTCACACCCAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAAT
66 TAGCGACGTCACA-CCAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAAT
* *
24212733 GGATTGGTGAACTGTCGGGCTCCACTGAGAATTTTAGAAATTTTAGTGGTTG
130 GGATTGGCGAACTGTCGGGCTCCACTAAGAATTTTAGAAATTTTAGTGGTTG
24212785 GATTGTGATT
Statistics
Matches: 168, Mismatches: 13, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
181 70 0.42
182 98 0.58
ACGTcount: A:0.33, C:0.09, G:0.21, T:0.37
Consensus pattern (181 bp):
AATATAGTATTTTTGTGTGAATATATGATGCTAAGATTTAAGAATAAGTTATATGAATGAATGAT
TAGCGACGTCACACCAATTATCCTTTATGTCCCAAAATTTAAGAAAGTTAGGATTAAATTGAATG
GATTGGCGAACTGTCGGGCTCCACTAAGAATTTTAGAAATTTTAGTGGTTG
Found at i:24213833 original size:68 final size:70
Alignment explanation
Indices: 24213759--24213943 Score: 230
Period size: 70 Copynumber: 2.7 Consensus size: 70
24213749 AGGTTTATGG
* * * *
24213759 TGTAAGACCATAGCTCGACTATGATAACCAATAGAGTCCGCTAGGA-AA-ATAAACATGAGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
24213822 CATTA
66 CATTA
* * * * *
24213827 TGTAAGACCATGGCTCGTCCATGACAACAAATAGAGTCTGCTAGGACAACAAAAACAAGGGGTTA
1 TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
*
24213892 CATTG
66 CATTA
* * *
24213897 TGTAAGACCCTAGCTCGACTATGGCAACAAATAAAAGTCCGCTAGGA
1 TGTAAGACCATAGCTCGACTATGACAACAAAT-AGAGTCCGCTAGGA
24213944 TAGTGAACCA
Statistics
Matches: 97, Mismatches: 17, Indels: 3
0.83 0.15 0.03
Matches are distributed among these distances:
68 40 0.41
69 2 0.02
70 43 0.44
71 12 0.12
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.21
Consensus pattern (70 bp):
TGTAAGACCATAGCTCGACTATGACAACAAATAGAGTCCGCTAGGACAACAAAAACAAGAGGTTA
CATTA
Found at i:24216224 original size:13 final size:13
Alignment explanation
Indices: 24216164--24216224 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 13
24216154 AGTTCTTCAT
24216164 TGCTTTTG-GAAAG
1 TGCTTTTGAG-AAG
*
24216177 TGCTTTTGAGAAT
1 TGCTTTTGAGAAG
* * *
24216190 TGCTGTGGAAAAG
1 TGCTTTTGAGAAG
*
24216203 TACTTTTGAGAAG
1 TGCTTTTGAGAAG
24216216 TGCTTTTGA
1 TGCTTTTGA
24216225 AAATTTTGAG
Statistics
Matches: 37, Mismatches: 10, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
13 36 0.97
14 1 0.03
ACGTcount: A:0.25, C:0.08, G:0.28, T:0.39
Consensus pattern (13 bp):
TGCTTTTGAGAAG
Found at i:24216226 original size:26 final size:26
Alignment explanation
Indices: 24216164--24216227 Score: 83
Period size: 26 Copynumber: 2.5 Consensus size: 26
24216154 AGTTCTTCAT
* * *
24216164 TGCTTTTGGAAAGTGCTTTTGAGAAT
1 TGCTTTTGAAAAGTACTTTTGAGAAG
* *
24216190 TGCTGTGGAAAAGTACTTTTGAGAAG
1 TGCTTTTGAAAAGTACTTTTGAGAAG
24216216 TGCTTTTGAAAA
1 TGCTTTTGAAAA
24216228 TTTTGAGTGT
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
26 31 1.00
ACGTcount: A:0.28, C:0.08, G:0.27, T:0.38
Consensus pattern (26 bp):
TGCTTTTGAAAAGTACTTTTGAGAAG
Found at i:24218195 original size:72 final size:73
Alignment explanation
Indices: 24218105--24218279 Score: 230
Period size: 72 Copynumber: 2.4 Consensus size: 73
24218095 AAAATCACAT
* * *
24218105 ATAAACAACTATTGATAAAACTAATTTAGTA-AAAAATAAGTAGAATATAAATTCAATATCTAAA
1 ATAAACAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAAA
*
24218169 GACCAAAC
66 AACCAAAC
* * *
24218177 ATAAACAACTTTTAATAAAACTAGA-TTA-CACATAAATAAGTAGAACATAAATTCAATATCCAA
1 ATAAACAACTATTGATAAAACTA-ATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAA
24218240 AAACCAAAC
65 AAACCAAAC
* * *
24218249 ATAAATAGCTATTGATAAAACTAGTTTAGCA
1 ATAAACAACTATTGATAAAACTAATTTAGCA
24218280 TTGTTGTTTA
Statistics
Matches: 87, Mismatches: 12, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
71 1 0.01
72 83 0.95
73 3 0.03
ACGTcount: A:0.54, C:0.13, G:0.07, T:0.26
Consensus pattern (73 bp):
ATAAACAACTATTGATAAAACTAATTTAGCACAAAAATAAGTAGAACATAAATTCAATATCCAAA
AACCAAAC
Found at i:24218722 original size:18 final size:18
Alignment explanation
Indices: 24218701--24218765 Score: 105
Period size: 18 Copynumber: 3.7 Consensus size: 18
24218691 TCCATCAATT
24218701 TGAACATCATTTGAAATG
1 TGAACATCATTTGAAATG
*
24218719 TGAACATCATTAGAAATG
1 TGAACATCATTTGAAATG
*
24218737 TGAACATCATAT-AAATG
1 TGAACATCATTTGAAATG
24218754 TGAACATCATTT
1 TGAACATCATTT
24218766 CTCATATTTT
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
17 16 0.37
18 27 0.63
ACGTcount: A:0.42, C:0.12, G:0.14, T:0.32
Consensus pattern (18 bp):
TGAACATCATTTGAAATG
Found at i:24221246 original size:19 final size:19
Alignment explanation
Indices: 24221222--24221298 Score: 109
Period size: 19 Copynumber: 4.1 Consensus size: 19
24221212 AGGGTGGAGA
*
24221222 AGAGGAACAAAGCACCAGC
1 AGAGGAACAAAGTACCAGC
*
24221241 AGAGGAACAAATTACCAGC
1 AGAGGAACAAAGTACCAGC
*
24221260 AGAGGAACAAATTACCAGC
1 AGAGGAACAAAGTACCAGC
* *
24221279 AGAGGAATAAAGAACCAGC
1 AGAGGAACAAAGTACCAGC
24221298 A
1 A
24221299 CCAGCAGAGG
Statistics
Matches: 53, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 53 1.00
ACGTcount: A:0.49, C:0.21, G:0.23, T:0.06
Consensus pattern (19 bp):
AGAGGAACAAAGTACCAGC
Found at i:24221301 original size:25 final size:25
Alignment explanation
Indices: 24221273--24221367 Score: 122
Period size: 25 Copynumber: 3.8 Consensus size: 25
24221263 GGAACAAATT
24221273 ACCAGCAGAGGAATAAAGAACCAGC
1 ACCAGCAGAGGAATAAAGAACCAGC
*
24221298 ACCAGCAGAGGTAA-AAAGAACTAGC
1 ACCAGCAGAGG-AATAAAGAACCAGC
* * *
24221323 ACCAGTAGAAGAACAAAGAACCAGC
1 ACCAGCAGAGGAATAAAGAACCAGC
24221348 ACCAGCAGAGG-ATCAAAGAA
1 ACCAGCAGAGGAAT-AAAGAA
24221368 GCAGTAGAGG
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
24 3 0.05
25 55 0.92
26 2 0.03
ACGTcount: A:0.49, C:0.22, G:0.23, T:0.05
Consensus pattern (25 bp):
ACCAGCAGAGGAATAAAGAACCAGC
Found at i:24221373 original size:44 final size:44
Alignment explanation
Indices: 24221254--24221391 Score: 134
Period size: 44 Copynumber: 3.0 Consensus size: 44
24221244 GGAACAAATT
* ** * *
24221254 ACCAGCAGAGGAACAAATTACCAGCAGAGGAATAAAGAACCAGC
1 ACCAGCAGAGGATCAAAGAAGCAGTAGAGGAATAAAGAACCAGC
* * *
24221298 ACCAGCAGAGG-TAAAAAGAACTAGCACCAGTAGAAGAACAAAGAACCAGC
1 ACCAGCAGAGGAT-CAAAG-A--AG---CAGTAGAGGAATAAAGAACCAGC
24221348 ACCAGCAGAGGATCAAAGAAGCAGTAGAGGAATAAAGAACCAGC
1 ACCAGCAGAGGATCAAAGAAGCAGTAGAGGAATAAAGAACCAGC
24221392 GATTAGAAAA
Statistics
Matches: 75, Mismatches: 11, Indels: 16
0.74 0.11 0.16
Matches are distributed among these distances:
44 35 0.47
47 3 0.04
49 1 0.01
50 35 0.47
51 1 0.01
ACGTcount: A:0.49, C:0.21, G:0.24, T:0.07
Consensus pattern (44 bp):
ACCAGCAGAGGATCAAAGAAGCAGTAGAGGAATAAAGAACCAGC
Found at i:24225485 original size:29 final size:29
Alignment explanation
Indices: 24225448--24225534 Score: 88
Period size: 29 Copynumber: 3.0 Consensus size: 29
24225438 ATAGAGATAG
*
24225448 ATAGCCACAAAGGCATCCACATAACAA-AT
1 ATAGCCACAAAGGCATCCACATAA-AATAA
* *
24225477 ATATCCACAAAGGC-TCTCATATAAAATTAA
1 ATAGCCACAAAGGCATC-CACATAAAA-TAA
* *
24225507 ATAGCTACAAAGGCATCCACATATAATA
1 ATAGCCACAAAGGCATCCACATAAAATA
24225535 GACTTCTCCA
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
28 4 0.09
29 21 0.45
30 20 0.43
31 2 0.04
ACGTcount: A:0.47, C:0.23, G:0.09, T:0.21
Consensus pattern (29 bp):
ATAGCCACAAAGGCATCCACATAAAATAA
Found at i:24225629 original size:29 final size:30
Alignment explanation
Indices: 24225569--24225638 Score: 88
Period size: 29 Copynumber: 2.4 Consensus size: 30
24225559 ACAGATACAA
* *
24225569 CCACAAAGACTCTTCATATAACAGAATCAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
* *
24225599 CCTCAAAGGCTCTT-ATACAACAGAATTAG
1 CCACAAAGGCTCTTCATACAACAGAATCAG
*
24225628 CCACGAAGGCT
1 CCACAAAGGCT
24225639 TTACTTTAAC
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
29 22 0.65
30 12 0.35
ACGTcount: A:0.39, C:0.27, G:0.14, T:0.20
Consensus pattern (30 bp):
CCACAAAGGCTCTTCATACAACAGAATCAG
Found at i:24225709 original size:30 final size:30
Alignment explanation
Indices: 24225673--24225730 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
24225663 TGGCTCCTTT
* *
24225673 TATCAGAGAATAGCCACAAAGGCTTCCACA
1 TATCAGAGAACAACCACAAAGGCTTCCACA
*
24225703 TATCAGAGAACAACTACAAAGGCTTCCA
1 TATCAGAGAACAACCACAAAGGCTTCCA
24225731 TTTTTCAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.16, T:0.17
Consensus pattern (30 bp):
TATCAGAGAACAACCACAAAGGCTTCCACA
Found at i:24227394 original size:18 final size:18
Alignment explanation
Indices: 24227371--24227411 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
24227361 TATTTAGCAT
24227371 TGCTTCTAGCTTCAAAAG
1 TGCTTCTAGCTTCAAAAG
24227389 TGCTTCTAGCTTCAAAAG
1 TGCTTCTAGCTTCAAAAG
24227407 TGCTT
1 TGCTT
24227412 TTGACCCCAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.24, C:0.22, G:0.17, T:0.37
Consensus pattern (18 bp):
TGCTTCTAGCTTCAAAAG
Found at i:24240639 original size:13 final size:13
Alignment explanation
Indices: 24240621--24240650 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
24240611 TTTCAATGAC
24240621 TTAATTAATGGAA
1 TTAATTAATGGAA
*
24240634 TTAATTAATGTAA
1 TTAATTAATGGAA
24240647 TTAA
1 TTAA
24240651 AAGATTTTGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.10, T:0.43
Consensus pattern (13 bp):
TTAATTAATGGAA
Found at i:24242518 original size:9 final size:9
Alignment explanation
Indices: 24242504--24242540 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
24242494 TATAGTTTGA
24242504 TATTCGAAT
1 TATTCGAAT
24242513 TATTCGAAT
1 TATTCGAAT
*
24242522 TATTCGAGT
1 TATTCGAAT
24242531 TATTCGAAT
1 TATTCGAAT
24242540 T
1 T
24242541 CAAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:24242618 original size:18 final size:18
Alignment explanation
Indices: 24242592--24242626 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
24242582 ATTCGAGTTG
24242592 ACTCAAATAACTCGATTA
1 ACTCAAATAACTCGATTA
*
24242610 ACTCGAATAACTCGATT
1 ACTCAAATAACTCGATT
24242627 CGTTTAACTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.29
Consensus pattern (18 bp):
ACTCAAATAACTCGATTA
Found at i:24246129 original size:100 final size:101
Alignment explanation
Indices: 24245946--24247316 Score: 978
Period size: 101 Copynumber: 14.3 Consensus size: 101
24245936 AAATCGGGCT
* * * * * **
24245946 GAAATGGACTATCATGCCAAACTACCCAGCCAAATTGTCCTGCAAAAATTTGATTGAATGC-ACT
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
24246010 TTAAGAGGACATTTTTATAAGTATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
* * *
24246046 GAAATGGACTGTCATGCAAAACTACCTAGCCAAACTGCCCTACCAAAA-TTGATTGAAAGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * * *
24246110 ATAAGAGGATATTTCTATAAGCAATCAAATTGAAAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
* ** * * * *
24246146 AAAATGGGTTGTCATGCTAAACTACCCCTA-CCAAACTCCCCTGCCAAAATTTGATTTAATGTAA
1 GAAATGGACTGTCATGCCAAACTA--CCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAA
* * *
24246210 AATTAAGAGGACATTTCTATAAGTATTCAATTTGGGAC
64 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
* * * * * * *
24246248 GAAATGGACTGTCTTGTCAAACGAACCT-GCTAAACTACCCTGCCAATATTTGCTTGAATGCAAA
1 GAAATGGACTGTCATGCCAAAC-TACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA
* * * *
24246312 ATTAAGAGGACATTTCTGTTAGCATTTAAATTAGAAC
65 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
* * *
24246349 AAAATAGACTGTCATGCCAAACTA--T--------T---CTGCCAAAATTTGATTTAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
24246401 TTAAGAGGATATTTCTATAAGCACTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
** * * * **
24246437 GAAATCAAC--T-AT-------TA---AGTCAAACTGTCCTGCTAAAATTT-ATTGAATGATAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
24246488 TTAAAAGGACAGTTCTATAACCATTCAAATTAGG-AC
66 TTAAGAGGACATTTCTATAAGCATTCAAATT-GGAAC
* * * * * * * * *
24246524 AAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTTGAATGTAAAT
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
24246589 TTAAAAGGACATTTTTATAAGCATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
*
24246625 GAAATGGACTGTCATGCCAAACTA-C-AG---AA--------CCAAAATTTGATTGAATGAAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *
24246677 TTAAGAGGACATTTCTATAAGCATTCAATTTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
** * * * * * *
24246713 GAAATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* * *
24246778 TTAAGAGAACATTTCTATTAGCATTCATATTAGG-AC
66 TTAAGAGGACATTTCTATAAGCATTCAAATT-GGAAC
* * * * * *
24246814 GACATGAACTGTTATACCAAA-T---T-GCTC-AA--------CAAAAATTTGATTGAATGAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGC-CAAACTGCCCTGCCAAAATTTGATTGAATGCAAA
* * * *
24246865 ATTAAGAGAACATTTCTGTAAGCATTAAAATTAGG-AT
65 ATTAAGAGGACATTTCTATAAGCATTCAAATT-GGAAC
* * * *
24246902 GAAATGAACTGT-ACTGCCAAATTACCCT-GCCAAATTGCCCTGCCAAAATTAGATTGAATGCAA
1 GAAATGGACTGTCA-TGCCAAACTA-CCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAA
** * *
24246965 AATTAAGAACACATTTATATAAGCATTCAAATTAGG-AG
64 AATTAAGAGGACATTTCTATAAGCATTCAAATT-GGAAC
* * * *
24247003 GAAATTGACTATCAGGCCAAA-T---T-GCC---CTG--CT---AAAA-TTGATTGAATCCAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
*
24247054 TTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
66 TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
* * * * * * *
24247090 AAAAAGTAATGTCATGCCAAACTA-CTCAGCCAAACTGCCCTACCAAAATTGGGTTGAATGCAAA
1 GAAATGGACTGTCATGCCAAACTACCT-AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAA
* * *
24247154 TTTAAGAGGACATTTTTATAAGCATTCAAATTGGGAC
65 ATTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
** * *
24247191 GAAATGGACTACCATGCAAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
1 GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
* *
24247256 TTAAGAAGACATTTCTATAAGCATTCAATTTCGG-AC
66 TTAAGAGGACATTTCTATAAGCATTCAAATT-GGAAC
* *
24247292 GAAATGTAC-GTCATGTCAAACTACC
1 GAAATGGACTGTCATGCCAAACTACC
24247317 CTATTAATAT
Statistics
Matches: 1003, Mismatches: 187, Indels: 162
0.74 0.14 0.12
Matches are distributed among these distances:
78 2 0.00
85 3 0.00
86 3 0.00
87 102 0.10
88 216 0.22
89 3 0.00
90 4 0.00
91 3 0.00
92 4 0.00
93 9 0.01
95 3 0.00
96 10 0.01
97 6 0.01
98 1 0.00
99 13 0.01
100 132 0.13
101 420 0.42
102 68 0.07
103 1 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
GAAATGGACTGTCATGCCAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAA
TTAAGAGGACATTTCTATAAGCATTCAAATTGGAAC
Found at i:24246431 original size:88 final size:88
Alignment explanation
Indices: 24246279--24246557 Score: 303
Period size: 88 Copynumber: 3.2 Consensus size: 88
24246269 CGAACCTGCT
* * * * * *
24246279 AAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAGGACATTTCTGTTAGCATTTAAATT
1 AAACTATCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT
* *
24246344 AGAACAAAATAGACTGTCATGCC
66 AGGACAAAATAGACTATCATGCC
* * * *
24246367 AAACTATTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGGATATTTCTATAAGCACTCAAATT
1 AAACTATCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT
* * * * *
24246432 GGGACGAAATCA-ACTATTAAGTC
66 AGGACAAAAT-AGACTATCATGCC
* * * * *
24246455 AAACTGTCCTGCTAAAATTT-ATTGAATG-ATAAATTAAAAGGACAGTTCTATAACCATTCAAAT
1 AAACTATCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTCAAAT
24246518 TAGGACAAAATAGACTATCATGCC
65 TAGGACAAAATAGACTATCATGCC
* *
24246542 AAACTACCCAGCCAAA
1 AAACTATCCTGCCAAA
24246558 CTGCCCTACC
Statistics
Matches: 153, Mismatches: 35, Indels: 7
0.78 0.18 0.04
Matches are distributed among these distances:
86 2 0.01
87 64 0.42
88 86 0.56
89 1 0.01
ACGTcount: A:0.41, C:0.18, G:0.13, T:0.28
Consensus pattern (88 bp):
AAACTATCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT
AGGACAAAATAGACTATCATGCC
Found at i:24246738 original size:189 final size:189
Alignment explanation
Indices: 24246378--24249670 Score: 882
Period size: 188 Copynumber: 17.4 Consensus size: 189
24246368 AACTATTCTG
* * * * * * * * *
24246378 CCAAAATTTGATTTAATGCAAAATTAAGAGGATATTTCTATAAGCACTCAAATTGGGACGAAATC
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * * * * ** * * * *
24246443 AACTATTAAGTCAAACTGTC-CTGCTAAAATTT-ATTGAATGATAAATTAAAAGGACAGTTCTAT
66 GACTATCATGCCAAACT-ACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
* * * *
24246506 AACCATTCAAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTA
130 AAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *
24246566 CCAAAAATT-GGTTGAATGTAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAAT
1 CC-AAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAAT
* *
24246630 GGACTGTCATGCCAAACTACAGAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
65 GGACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
* * ** * ** * *
24246695 AAGCATTCAATTTGGGACGAAATGGGTTGTCATGTCAAACTACCTTGCCAAACTACCCTG
130 AAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * * * * * *
24246755 CTAATATTTGCTTGAATGCAAAATTAAGAGAACATTTCTATTAGCATTCATATTAGGACGACATG
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * * * * * * * * *
24246820 AACTGTTATACCAAATTGCTCAACAAAAATTTGATTGAATGAAAAATTAAGAGAACATTTCTGTA
66 GACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATA
* * * * * * *
24246885 AGCATTAAAATTAGGATGAAATGAACTGT-ACTGCCAAATTACCCTGCCAAATTGCCCTG
131 AGCATTCAAATTAGGACGAAATGGACTGTCA-TGCCAAACTACCCAGCCAAACTGCCCTA
* * * *
24246944 CCAAAATTAGATTGAATGCAAAATTAAGAA-CACATTTATATAAGCATTCAAATTAGGAGGAAAT
1 CCAAAATTAGGTTGAATGCAAAATTAA-AAGGACATTTTTATAAGCATTCAAATTAGGACGAAAT
* * * * * ** * **
24247008 TGACTATCAGGCCAAATTGCCCTGCTAAAA-TTGATTGAATCCAAAATTAAGAGGACATTTCTAT
65 GGACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
* * * * * *
24247072 AAGCATTCAAATTGGGACAAAAAGTAATGTCATGCCAAACTACTCAGCCAAACTGCCCTA
130 AAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * *
24247132 CCAAAATTGGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATG
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * *
24247197 GACTACCATGCAAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA
66 GACTATCATGCCAAACTA--CA--C-AA--------CCAAAATTTGATTGAATGAAAAATTAAGA
* * * * * *
24247262 AGACATTTCTATAAGCATTCAATTTCGGACGAAATGTAC-GTCATGTCAAACTA--C--CC-TA-
118 GGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAAC
24247320 T----T-
183 TGCCCTA
* * * * * * * * * *
24247322 --AATATTTGCTTGAATGCACAGTTAATAGGACATTTCTATTAGAATTTAAATT-GGAACGAAAT
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGG-ACGAAAT
* * * * *** * * *
24247384 AGACTCTCATGCCAAACTACTCTACTTCAATTTGATTTATTGCAAAATTAAGAGGACATTTCTAT
65 GGACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTAT
* * * * *
24247449 AAGTATTCAAATT-GAGACAAAATTGATTGTCAAGCCAAACT----A-CC---CTG--CT-
130 AAGCATTCAAATTAG-GACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * * * **
24247498 --AAAATT-GATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCAAATTAGGACATTTT
1 CCAAAATTAGGTTGAATGCA-AAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGAC-----
* ** * * * * * * ** * * *
24247559 TAAGAGGTTGAATGCAAAATTAAGCCAAGCTACCCAGCC-AAA-CTGCCCTG-CT-AATATTTCA
60 ---GA-----AATGGACTATCATGCCAAACTACACAACCAAAATTTG-ATTGAATGAAAAATT-A
* * ** * * ** **
24247620 ATAAG-CATTTAC-ATTGGGACATTTC-AA-TAAG-C-CAA--G-CTACCTA-GCCAAACCGCCC
115 AGAGGACATTT-CTA-TAAG-CA-TTCAAATTAGGACGAAATGGACTGTC-ATGCCAAACTACCC
* * * ****
24247675 TGCTAATATTTTGTTGAA
175 AGCCAA-A--CTGCCCTA
* * * * * *** * * ** ** * * * *
24247693 TGCAAATTTAAG-AGGA--CATTTTTATAAGCATTCA-AATTGGAA-CGATATGGACTATCATG-
1 -CCAAAATTAGGTTGAATGCAAAATTAAAAGGA--CATTTTTATAAGC-AT-T-CA-AATTAGGA
* * * ** * *
24247752 C-AAA---ACTAACCA-GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACA
59 CGAAATGGACT-ATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACA
* * * * * * * *
24247812 TTTCTATGAGTGA-TC-AATTTGGAATGAAATGGATTGTCATGTCAAACTTCCCTAG-CAGACTG
123 TTTCTATAAG-CATTCAAATTAGG-ACGAAATGGACTGTCATGCCAAACTACCC-AGCCAAACTG
* *
24247874 CCTTG
185 CCCTA
* * * * * * * *
24247879 CCAATATTTGCTTCAATGCAAAATTAAAAGCACATTTCTATTAGCATTCAAATTGGGACGAAAT-
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * * ** * *
24247943 -A-GA-C-TGTC--ACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGGACATTTCTATA
66 GACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATA
* * * * * *
24248002 AACATTTAAAATGGGACGAAATTGA-TAGTCAAGCCAAACT-----GCC---CTG--CT-
131 AGCATTCAAATTAGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * **
24248050 --AAAATT-GATTGAATG-ATAAATTAAGAGGACATTTCCATAAGCATTCAAATT-GAGACGAAA
1 CCAAAATTAGGTTGAATGCA-AAATTAAAAGGACATTTTTATAAGCATTCAAATTAG-GACGAAA
* * * ** *
24248110 TGAACTGTCTTGTTAAACTACCCAACCAAACTGCCCTGCCAAAATTTTG-TTGAATGAAAATTTA
64 TGGACTATCATGCCAAACTA--C-A-C-AA--------CCAAAA-TTTGATTGAATGAAAAATTA
* * *
24248174 AGAGGGCATTTTTATAAGCATTTAAATT-GAGACGAAATGGACTGTCATGCCAAACTACCCAGCC
115 AGAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATGGACTGTCATGCCAAACTACCCAGCC
* *
24248238 AAATTGCCCTG
179 AAACTGCCCTA
* * * * * *
24248249 CCAAAATTTGATTGAATGC--ACTTGAAGAGGACATTTTTATAGGCATTCAAATTGGGACGAAAT
1 CCAAAATTAGGTTGAATGCAAAATT-AAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAAT
* * *
24248312 GGACTATCATGCCAAACTACCCAGCCAAACTGCGCTACCAAAATTAATTGAATGCAAAAA-TAAT
65 GGACTATCATGCCAAACTA--CA--C-AA---C-C-A--AAATTTGATTGAATG-AAAAATTAAG
** * * * * * *
24248376 AGGGTATTTCTATAAGCATTCAAATTGGGACAAAATGGGCAGTCATGCAAAACTACCCAACCAAA
117 AGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
* * *
24248441 CTACCTTG
182 CTGCCCTA
* * * * * * * *
24248449 TCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTC-AATTTGGCAAGAAAT
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGG-ACGAAAT
* * * * * *
24248513 GGACTGTCATGTCGAACTACCCTGCCAAATTGCCCTTCAAATATTT-ATTTGAGTGCAAAATTAA
65 GGACTATCATGCCAAACTA--C--AC-AA-----C--CAAA-ATTTGA-TTGAATGAAAAATTAA
* * * * *
24248577 GATGACATTTCTATTAGCATTTAAATTAGAACGATATGGACTGTCATGCCAAACT----------
116 GAGGACATTTCTATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAA
*
24248632 ACT---CTG
181 ACTGCCCTA
* * * * * * * * * *
24248638 CCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCAAATTTGGACTAAATT
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * * * * * ** * * * *
24248703 GAATGTCAAGTCAAACTGCCCTGCTAAAA-TTGATTGAAT-AATAAATTAAGAGAACATTTTTTT
66 GACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAA-AAATTAAGAGGACATTTCTAT
* * * * * * * * * *
24248766 AAGCATTCAAATTTGGTA-GAAATAGACTATTATACAAAACTACCAAGCTC-AATTGCCTTG
130 AAGCATTCAAATTAGG-ACGAAATGGACTGTCATGCCAAACTACCCAGC-CAAACTGCCCTA
* * * * * * * *
24248826 CCAAAATT-GATTAAAAGCAAAACTAAGAGGACATTTATATAAGCGTTCAAATT-GCGACAAAAT
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAG-GACGAAAT
* * * * *
24248889 CGACTGTCATGCAAAACTACCCAACCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGA
65 GGACTATCATGCCAAACTA--C-A-CA-A--------CCAAAATTTGATTGAA-TGAAAAATTAA
* * * *
24248953 GAGGACATTTCTATAAGCAAT-AAATTTGCGACGAAATGGACTGTCATGCTAAACTACCCTGCCA
116 GAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATGGACTGTCATGCCAAACTACCCAGCC-
* *
24249017 AAACTACCCTG
179 AAACTGCCCTA
* * * * * * *
24249028 CTAATATTTGCTTAAATGCAAAA-TAAAGAGAACATTTCTATTAA-CATTCAAATT-GGAACGAA
1 CCAAAATTAGGTTGAATGCAAAATTAAA-AGGACATTTTTA-TAAGCATTCAAATTAGG-ACGAA
* ** ****
24249090 ATGGACTGTCACACCAAACTACTTTTCC-AAATTTGATTGAATGAAAAATTAAGAGGACATTTCT
63 ATGGACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCT
* * * * * * *
24249154 ATACGTATTAAAATTGGGATGAAATGGACTGTAATGCCAAACTACCCAGCCAAACTGCCCTG
128 ATAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * * *
24249216 CCAAAATTAGATTGAATGCAAAATTAATAA-GACATTTCTATAAGCATTCAAATTAGGAGGGAAT
1 CCAAAATTAGGTTGAATGCAAAATTAA-AAGGACATTTTTATAAGCATTCAAATTAGGACGAAAT
* * * * * ** * * * *
24249280 TGATTGTCAGGCCAAACTGC-CTTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACATTTCTC
65 GGACTATCATGCCAAACTACAC-AACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTA
* * * * *
24249343 TAAGCATTCAAATTGGGACGAAATGGACTGTCTTGCCAAACTACTCATCCAAACTTCCCTA
129 TAAGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
* * *** ** * *
24249404 CCAAAATTTGGTTGAATGCAAATTTTTTAGGACATTTTTATAATTATTCAAATTGGGACTAAATG
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
* * *
24249469 AACTATCATTCCAAACTACCCAGCAAACAGCCCTGCCAAAA-TTGATTGAAAGCAAAAA-TAAGA
66 GACTATCATGCCAAACTA--CA-C--A-A------CCAAAATTTGATTGAATG-AAAAATTAAGA
* * * * * ** * *
24249532 GGACGTTTATATAAGCATTCAAATT-GCGACAAAATGGCCTATCATGGAAAACTACCTAACCAAA
118 GGACATTTCTATAAGCATTCAAATTAG-GACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
* *
24249596 CTGCTCTG
182 CTGCCCTA
* * * * * * * *
24249604 CCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTTATAAGCATTCGATTTGGGACGAAATG
1 CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
24249669 GA
66 GA
24249671 TTGCCATGAC
Statistics
Matches: 2302, Mismatches: 571, Indels: 452
0.69 0.17 0.14
Matches are distributed among these distances:
167 2 0.00
168 45 0.02
169 5 0.00
170 1 0.00
172 2 0.00
173 3 0.00
174 7 0.00
175 147 0.06
176 23 0.01
177 5 0.00
179 2 0.00
181 11 0.00
182 87 0.04
183 17 0.01
184 22 0.01
185 35 0.02
186 26 0.01
187 79 0.03
188 603 0.26
189 460 0.20
190 21 0.01
191 2 0.00
192 7 0.00
193 3 0.00
195 1 0.00
196 14 0.01
197 8 0.00
198 11 0.00
199 6 0.00
200 247 0.11
201 201 0.09
202 140 0.06
203 55 0.02
204 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (189 bp):
CCAAAATTAGGTTGAATGCAAAATTAAAAGGACATTTTTATAAGCATTCAAATTAGGACGAAATG
GACTATCATGCCAAACTACACAACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATA
AGCATTCAAATTAGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTA
Found at i:24246746 original size:88 final size:88
Alignment explanation
Indices: 24246565--24246737 Score: 256
Period size: 88 Copynumber: 2.0 Consensus size: 88
24246555 AAACTGCCCT
* * * *
24246565 ACCAAAAATTGGTTGAATGTAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAAT
1 ACCAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
24246630 GGACTGTCATGCCAAACTACAGA
66 GGACTGTCATGCCAAACTACAGA
* * *
24246653 ACCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAAT
1 ACCAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
** *
24246718 GGGTTGTCATGTCAAACTAC
66 GGACTGTCATGCCAAACTAC
24246738 CTTGCCAAAC
Statistics
Matches: 75, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
88 75 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.28
Consensus pattern (88 bp):
ACCAAAAATTGATTGAATGAAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTACAGA
Found at i:24246933 original size:13 final size:13
Alignment explanation
Indices: 24246915--24246948 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
24246905 ATGAACTGTA
24246915 CTGCCAAATTACC
1 CTGCCAAATTACC
*
24246928 CTGCCAAATTGCC
1 CTGCCAAATTACC
24246941 CTGCCAAA
1 CTGCCAAA
24246949 ATTAGATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.29, C:0.38, G:0.12, T:0.21
Consensus pattern (13 bp):
CTGCCAAATTACC
Found at i:24247065 original size:465 final size:458
Alignment explanation
Indices: 24246189--24247283 Score: 1082
Period size: 465 Copynumber: 2.3 Consensus size: 458
24246179 AACTCCCCTG
* * *
24246189 CCAAAATTTGATTTAATGTAAAATTAAGAGGACATTTCTATAAGTATTCAATTTGGGACGAAATG
1 CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAATG
* * *
24246254 GACTGTCTTGTCAAACGAACCTGCTAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA
66 GACTGTCATGTCAAAC-TACCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA
* * * * * ** *
24246319 GGACATTTCTGTTAGCATTTAAATTAGAACAAAATAGACTGTCATGCCAAACTATTCTGCCAAAA
130 GAACATTTCTATTAGCATTCAAATTAGAACAAAATAGACTGTCATACCAAACTACTCAACAAAAA
* * * * * *
24246384 TTTGATTTAATGCAAAATTAAGAGGATATTTCTATAAGCACTCAAATTGGGACGAAATCAACTAT
195 TTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCACTAAAATTAGGACGAAATCAACTAT
* * * * * *
24246449 TAAGTCAAACTGTCCTGCTAAAATTTATTGAATGATAAATTAAAAGGACAGTTCTATAACCATTC
260 TAAGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAAGCACAGTTATATAACCATTC
* *
24246514 AAATTAGGACAAAATAGACTATCATGCCAAACTACCCAGCCAAACTGCCCTACCAAAAATTGGTT
325 AAATTAGGACAAAATAGACTATCAGGCCAAACT---CAGCC--ACTG-CCT---AAAAATTGATT
** * * * * *
24246579 GAATGTAAATTTAAAAGGACATTTTTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCA
381 GAATCCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACAAAAAGGAATGTCATGCCA
24246644 AACTA-CAG-A-A
446 AACTACCAGAACA
24246654 CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAATG
1 CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAATG
** *
24246719 GGTTGTCATGTCAAACTACCTTGCCAAACTACCCTGCTAATATTTGCTTGAATGCAAAATTAAGA
66 GACTGTCATGTCAAACTACC-TGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGA
* * * * * * *
24246784 GAACATTTCTATTAGCATTCATATTAGGACGACAT-GAACTGTTATACCAAATTGCTCAACAAAA
130 GAACATTTCTATTAGCATTCAAATTAGAACAAAATAG-ACTGTCATACCAAACTACTCAACAAAA
* * *
24246848 ATTTGATTGAATGAAAAATTAAGAGAACATTTCTGTAAGCATTAAAATTAGGATGAAATGAACTG
194 ATTTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCACTAAAATTAGGACGAAAT---C--
* * *
24246913 TACTGCCAAATTACCCTGCCAAATTGCCCTGCCAAAATTAGATTGAATGCA-AAATTAAGAA-CA
254 AACT-----ATTA---AGCCAAACTGCCCTGCCAAAATT-GATTGAATG-ATAAATTAA-AAGCA
* * ** * *
24246976 CATTTATATAAGCATTCAAATTAGGAGGAAATTGACTATCAGGCCAAA-T-TGCC-CTG-CT-AA
308 CAGTTATATAACCATTCAAATTAGGACAAAATAGACTATCAGGCCAAACTCAGCCACTGCCTAAA
* *
24247036 AATTGATTGAATCCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAAAGTAATG
373 AATTGATTGAATCCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGGACAAAAAGGAATG
24247101 TCATGCCAAACTACTCAGCCAAACTGCCCTA
438 TCATGCCAAACTAC-CAG---AA-----C-A
* * * * * *
24247132 CCAAAATTGGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACGAAATG
1 CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAATG
** * * * *
24247197 GACTACCATG-CAAAACTACCCAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG
66 GACTGTCATGTC-AAACTA-CCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAG
*
24247261 A-AGACATTTCTATAAGCATTCAA
129 AGA-ACATTTCTATTAGCATTCAA
24247284 TTTCGGACGA
Statistics
Matches: 520, Mismatches: 76, Indels: 55
0.80 0.12 0.08
Matches are distributed among these distances:
464 4 0.01
465 284 0.55
467 3 0.01
468 1 0.00
469 2 0.00
470 3 0.01
471 4 0.01
474 3 0.01
475 4 0.01
477 2 0.00
478 148 0.28
479 59 0.11
480 3 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.28
Consensus pattern (458 bp):
CCAAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGACGAAATG
GACTGTCATGTCAAACTACCTGCCAAACTACCCTGCCAATATTTGCTTGAATGCAAAATTAAGAG
AACATTTCTATTAGCATTCAAATTAGAACAAAATAGACTGTCATACCAAACTACTCAACAAAAAT
TTGATTGAATGAAAAATTAAGAGAACATTTCTATAAGCACTAAAATTAGGACGAAATCAACTATT
AAGCCAAACTGCCCTGCCAAAATTGATTGAATGATAAATTAAAAGCACAGTTATATAACCATTCA
AATTAGGACAAAATAGACTATCAGGCCAAACTCAGCCACTGCCTAAAAATTGATTGAATCCAAAA
TTAAAAGGACATTTCTATAAGCATTCAAATTGGGACAAAAAGGAATGTCATGCCAAACTACCAGA
ACA
Found at i:24247109 original size:87 final size:88
Alignment explanation
Indices: 24246929--24247110 Score: 233
Period size: 87 Copynumber: 2.1 Consensus size: 88
24246919 CAAATTACCC
*
24246929 TGCCAAATTGCCCTGCCAAAATTAGATTGAATGCAAAATTAAGAACACATTTATATAAGCATTCA
1 TGCCAAATTGCCCTGCCAAAATTAGATTGAATCCAAAATTAAGAACACATTTATATAAGCATTCA
** * *
24246994 AATTAGGAGGAAATTGACTATCA
66 AATTAGGAAAAAAGTGAATATCA
* * ** *
24247017 GGCCAAATTGCCCTGCTAAAATT-GATTGAATCCAAAATTAAGAGGACATTTCTATAAGCATTCA
1 TGCCAAATTGCCCTGCCAAAATTAGATTGAATCCAAAATTAAGAACACATTTATATAAGCATTCA
* *
24247081 AATTGGGACAAAAAGT-AATGTCA
66 AATTAGGA-AAAAAGTGAATATCA
24247104 TGCCAAA
1 TGCCAAA
24247111 CTACTCAGCC
Statistics
Matches: 80, Mismatches: 13, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
87 55 0.69
88 25 0.31
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.26
Consensus pattern (88 bp):
TGCCAAATTGCCCTGCCAAAATTAGATTGAATCCAAAATTAAGAACACATTTATATAAGCATTCA
AATTAGGAAAAAAGTGAATATCA
Found at i:24247381 original size:87 final size:87
Alignment explanation
Indices: 24247236--24247553 Score: 286
Period size: 87 Copynumber: 3.6 Consensus size: 87
24247226 TGCCCTGCCA
* * *
24247236 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAATTTCGGACGAAAT-GTA
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATT-GGACGAAATAG-A
* *
24247300 C-GTCATGTCAAACTACCCTA-TT
64 CTCTCATGCCAAACTACCCTACTT
* * * * * *
24247322 AATATTTGCTTGAATGCACAGTTAATAGGACATTTCTATTAGAATTTAAATTGGAACGAAATAGA
1 AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGG-ACGAAATAGA
*
24247387 CTCTCATGCCAAACTACTCTACTT
64 CTCTCATGCCAAACTACCCTACTT
* * * * * * *
24247411 CAATTTGATTTATTGCAAAATTAAGAGGACATTTCTATAAGTATTCAAATTGAGACAAAATTGAT
1 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTG-GACGAAATAGAC
* * *
24247476 TGTCAAGCCAAACTACCCTGC-T
65 TCTCATGCCAAACTACCCTACTT
* * * * * *
24247498 AAAATTGATTGAGTG-ATAAATTAAGAGAAAATTTCAATAAGCATTCAAATTAGGAC
1 AAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGAATTCAAATT-GGAC
24247554 ATTTTTAAGA
Statistics
Matches: 187, Mismatches: 37, Indels: 15
0.78 0.15 0.06
Matches are distributed among these distances:
86 5 0.03
87 94 0.50
88 84 0.45
89 4 0.02
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (87 bp):
AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGAATTCAAATTGGACGAAATAGACT
CTCATGCCAAACTACCCTACTT
Found at i:24247798 original size:101 final size:101
Alignment explanation
Indices: 24247658--24247947 Score: 291
Period size: 101 Copynumber: 2.9 Consensus size: 101
24247648 AAGCCAAGCT
* * * * *
24247658 ACCTAGCCAAACCGCCCTGCTAATATTTTGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCA
1 ACCTAGCCAAACTGCCCTGCCAA-AATTTGTTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
*
24247723 TTCAAATTGGAACGATATGGACTATCATG-CAAAACTA
65 TTCAAATTGGAACGAAATGGACTATCATGTC-AAACTA
* * *
24247760 ACC-AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATGAGTG
1 ACCTAGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTCTATAAG-C
* * * * *
24247824 A-TCAATTTGGAATGAAATGGATTGTCATGTCAAACTT
64 ATTCAAATTGGAACGAAATGGACTATCATGTCAAACTA
* * * * * * * *
24247861 CCCTAG-CAGACTGCCTTGCCAATATTTGCTTCAATGCAAAATTAAAAGCACATTTCTATTAGCA
1 ACCTAGCCAAACTGCCCTGCCAAAATTTG-TTGAATGCAAAATTAAGAGGACATTTCTATAAGCA
* *
24247925 TTCAAATTGGGACGAAATAGACT
65 TTCAAATTGGAACGAAATGGACT
24247948 GTCACTACTC
Statistics
Matches: 153, Mismatches: 30, Indels: 11
0.79 0.15 0.06
Matches are distributed among these distances:
100 6 0.04
101 140 0.92
102 7 0.05
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (101 bp):
ACCTAGCCAAACTGCCCTGCCAAAATTTGTTGAATGCAAAATTAAGAGGACATTTCTATAAGCAT
TCAAATTGGAACGAAATGGACTATCATGTCAAACTA
Found at i:24248209 original size:101 final size:101
Alignment explanation
Indices: 24248033--24249269 Score: 940
Period size: 101 Copynumber: 12.7 Consensus size: 101
24248023 TTGATAGTCA
* *
24248033 AGCCAAACTGCCCTGCTAAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCCATAAGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCA-AAATTAAGAGGACATTTCTATAAGCATTC
* * **
24248096 AAATTGAGACGAAATGAACTGTCTTGTTAAACTACCC
65 AAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * *
24248133 AACCAAACTGCCCTGCCAAAATTTTG-TTGAATG-AAAATTTAAGAGGGCATTTTTATAAGCATT
1 AGCCAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAA-TTAAGAGGACATTTCTATAAGCATT
*
24248196 TAAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
64 CAAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * *
24248234 AGCCAAATTGCCCTGCCAAAATTTGATTGAATGC--ACTTGAAGAGGACATTTTTATAGGCATTC
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATT-AAGAGGACATTTCTATAAGCATTC
* *
24248297 AAATTGGGACGAAATGGACTATCATGCCAAACTACCC
65 AAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * * **
24248334 AGCCAAACTGCGCTACCAAAA-TTAATTGAATGCAAAAATAATAGGGTATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * *
24248398 AATTGGGACAAAATGGGCAGTCATGCAAAACTACCC
66 AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
24248434 AACCAAACTACCTTGTCAAAATTTGATTGAATGCAAAATTAACAGGACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
24248499 ATTTG-GCAAGAAATGGACTGTCATGTCGAACTACCC
66 AATTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * *
24248535 TGCCAAATTGCCCT-TCAAATATTT-ATTTGAGTGCAAAATTAAGATGACATTTCTATTAGCATT
1 AGCCAAACTGCCCTGCCAAA-ATTTGA-TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATT
* *
24248598 TAAATT-AGAACGATATGGACTGTCATGCCAAACT----
64 CAAATTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* * *
24248632 ------ACT---CTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
24248688 AATTTG-GACTAAAT----TG-AATG------T--CA
66 AA-TTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * *** * * *
24248711 AGTCAAACTGCCCTGCTAAAA-TTGATTGAATAATAAATTAAGAGAACATTTTTTTAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * * * *
24248775 AATTTG-GTA-GAAATAGACTATTATACAAAACTACCA
66 AA-TTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * *
24248811 AGCTC-AATTGCCTTGCCAAAA-TTGATTAAAAGCAAAACTAAGAGGACATTTATATAAGCGTTC
1 AGC-CAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC
* * * *
24248874 AAATTGCGACAAAATCGACTGTCATGCAAAACTACCC
65 AAATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * *
24248911 AACCAGACTGCCCTGCCAAAATTTGATTAAATTG-AAAATTGAGAGGACATTTCTATAAGCAAT-
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTATAAGCATTC
* *
24248974 AAATTTGCGACGAAATGGACTGTCATGCTAAACTACCC
65 AAA-TTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * * * * * * *
24249012 TGCCAAAACTACCCTGCTAATATTTGCTTAAATGCAAAATAAAGAGAACATTTCTATTAA-CATT
1 AGCC-AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATT
24249076 CAAATTG-GAACGAAATGGACTG---T------C-A--C
64 CAAATTGAG-ACGAAATGGACTGTCATGCCAAACTACCC
* ** * * * * *
24249102 A-CCAAACTACTTTTCC-AAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATACGTATTAA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * *
24249165 AATTGGGATGAAATGGACTGTAATGCCAAACTACCC
66 AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
* * *
24249201 AGCCAAACTGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCA
1 AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
24249266 AATT
66 AATT
24249270 AGGAGGGAAT
Statistics
Matches: 902, Mismatches: 165, Indels: 139
0.75 0.14 0.12
Matches are distributed among these distances:
77 1 0.00
83 3 0.00
84 2 0.00
85 3 0.00
86 2 0.00
87 99 0.11
88 64 0.07
89 10 0.01
90 2 0.00
91 3 0.00
92 3 0.00
93 1 0.00
96 1 0.00
97 1 0.00
98 1 0.00
99 21 0.02
100 277 0.31
101 339 0.38
102 63 0.07
103 6 0.01
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (101 bp):
AGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
AATTGAGACGAAATGGACTGTCATGCCAAACTACCC
Found at i:24248691 original size:88 final size:87
Alignment explanation
Indices: 24248561--24248778 Score: 224
Period size: 88 Copynumber: 2.5 Consensus size: 87
24248551 AAATATTTAT
* * * * * *
24248561 TTGAGTGCAAAATTAAGATG-ACATTTCTATTAGCATTTAAATTAGAACGATATGGACTGTCATG
1 TTGAATGCAAAATTAAGA-GAACATTTCTATAAGCATTCAAATTAGAACGAAATGGAATGTCAAG
*
24248625 CCAAACTACTCTGCCAAAATTTGA
65 CCAAACTACCCTGCCAAAA-TTGA
* * * * * * *
24248649 TTTAATGCAAAATTAAGAGAACATTTCTATAAGTATTCAAATTTGGACTAAATTGAATGTCAAGT
1 TTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTAGAACGAAATGGAATGTCAAGC
* *
24248714 CAAACTGCCCTGCTAAAATTGA
66 CAAACTACCCTGCCAAAATTGA
* * *
24248736 TTGAAT-AATAAATTAAGAGAACATTTTTTTAAGCATTCAAATT
1 TTGAATGCA-AAATTAAGAGAACATTTCTATAAGCATTCAAATT
24248779 TGGTAGAAAT
Statistics
Matches: 107, Mismatches: 21, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
86 1 0.01
87 41 0.38
88 65 0.61
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.33
Consensus pattern (87 bp):
TTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTAGAACGAAATGGAATGTCAAGC
CAAACTACCCTGCCAAAATTGA
Found at i:24248937 original size:477 final size:477
Alignment explanation
Indices: 24248273--24249168 Score: 1142
Period size: 477 Copynumber: 1.9 Consensus size: 477
24248263 AATGCACTTG
* * * * * *
24248273 AAGAGGACATTTTTATAGGCATTCAAATTGGGACGAAATGGACTATCATGCCAAACTACCCAGCC
1 AAGAGAACATTTTTATAAGCATTCAAATTGGGACGAAATAGACTATCATACAAAACTACCAAGCC
* * * ** *
24248338 AAACTGCGCTACCAAAATTAATTGAATGCAAAAATAATAGGGTATTTCTATAAGCATTCAAATTG
66 AAACTGCGCTACCAAAATTAATTAAAAGCAAAAATAAGAGGACATTTATATAAGCATTCAAATTG
* * * * * *
24248403 GGACAAAATGGGCAGTCATGCAAAACTACCCAACCAAACTACCTTGTCAAAATTTGATTGAA-TG
131 CGACAAAATCGACAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGATTAAATTG
* * * *
24248467 CAAAATTAACAGGACATTTCTATAAGTATTCAATTTG-GCAAGAAATGGACTGTCATG-TCGAAC
196 -AAAATTAACAGGACATTTCTATAAGCAATAAATTTGCG-AAGAAATGGACTGTCATGCT-AAAC
* * * * * * *
24248530 TACCCTGCC-AAATTGCCCTTCAAATATTTATTTGAGTGCAAAATTAAGATG-ACATTTCTATTA
258 TACCCTGCCAAAACTACCCTGCAAATATTTACTTAAATGCAAAATAAAGA-GAACATTTCTATTA
* * * ** * *
24248593 GCATTTAAATTAGAACGATATGGACTGTCATGCCAAACTACTCTGCCAAAATTTGATTTAATGCA
322 ACATTCAAATTAGAACGAAATGGACTGTCACACCAAACTACTCTGCC-AAATTTGATTGAATGAA
*
24248658 AAATTAAGAGAACATTTCTATAAGTATTCAAATTTGGACTAAATTGAATGTCAAGTCAAACTGCC
386 AAATTAAGAGAACATTTCTATAAGTATTAAAATTTGGACTAAATTGAATGTCAAGTCAAACTGCC
24248723 CTGCTAAAATTGATTGAATAATAAATT
451 CTGCTAAAATTGATTGAATAATAAATT
* * *
24248750 AAGAGAACATTTTTTTAAGCATTCAAATTTGGTA-GAAATAGACTATTATACAAAACTACCAAGC
1 AAGAGAACATTTTTATAAGCATTCAAA-TTGGGACGAAATAGACTATCATACAAAACTACCAAGC
* * * * *
24248814 TC-AATTGC-CTTGCCAAAATTGATTAAAAGCAAAACTAAGAGGACATTTATATAAGCGTTCAAA
65 -CAAACTGCGC-TACCAAAATTAATTAAAAGCAAAAATAAGAGGACATTTATATAAGCATTCAAA
* * *
24248877 TTGCGACAAAATCGACTGTCATGCAAAACTACCCAACCAGACTGCCCTGCCAAAATTTGATTAAA
128 TTGCGACAAAATCGACAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGATTAAA
* * *
24248942 TTGAAAATTGAGAGGACATTTCTATAAGCAATAAATTTGCGACGAAATGGACTGTCATGCTAAAC
193 TTGAAAATTAACAGGACATTTCTATAAGCAATAAATTTGCGAAGAAATGGACTGTCATGCTAAAC
* *
24249007 TACCCTGCCAAAACTACCCTGCTAATATTTGCTTAAATGCAAAATAAAGAGAACATTTCTATTAA
258 TACCCTGCCAAAACTACCCTGCAAATATTTACTTAAATGCAAAATAAAGAGAACATTTCTATTAA
* * *
24249072 CATTCAAATTGGAACGAAATGGACTGTCACACCAAACTACTTTTCCAAATTTGATTGAATGAAAA
323 CATTCAAATTAGAACGAAATGGACTGTCACACCAAACTACTCTGCCAAATTTGATTGAATGAAAA
* *
24249137 ATTAAGAGGACATTTCTATACGTATTAAAATT
388 ATTAAGAGAACATTTCTATAAGTATTAAAATT
24249169 GGGATGAAAT
Statistics
Matches: 353, Mismatches: 58, Indels: 16
0.83 0.14 0.04
Matches are distributed among these distances:
476 1 0.00
477 260 0.74
478 92 0.26
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.29
Consensus pattern (477 bp):
AAGAGAACATTTTTATAAGCATTCAAATTGGGACGAAATAGACTATCATACAAAACTACCAAGCC
AAACTGCGCTACCAAAATTAATTAAAAGCAAAAATAAGAGGACATTTATATAAGCATTCAAATTG
CGACAAAATCGACAGTCATGCAAAACTACCCAACCAAACTACCCTGCCAAAATTTGATTAAATTG
AAAATTAACAGGACATTTCTATAAGCAATAAATTTGCGAAGAAATGGACTGTCATGCTAAACTAC
CCTGCCAAAACTACCCTGCAAATATTTACTTAAATGCAAAATAAAGAGAACATTTCTATTAACAT
TCAAATTAGAACGAAATGGACTGTCACACCAAACTACTCTGCCAAATTTGATTGAATGAAAAATT
AAGAGAACATTTCTATAAGTATTAAAATTTGGACTAAATTGAATGTCAAGTCAAACTGCCCTGCT
AAAATTGATTGAATAATAAATT
Found at i:24249194 original size:87 final size:87
Alignment explanation
Indices: 24249033--24249198 Score: 201
Period size: 87 Copynumber: 1.9 Consensus size: 87
24249023 CCCTGCTAAT
* * *
24249033 ATTTGCTTAAATGCAAAATAAAGAGAACATTTCTATTAACATTCAAATTGGAACGAAATGGACTG
1 ATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTG
*
24249098 TCACACCAAACTACTTTTCCAA
66 TAACACCAAACTACTTTTCCAA
* * * * *
24249120 ATTTGATTGAATGAAAAATTAAGAGGACATTTCTA-T-ACGTATTAAAATTGGGATGAAATGGAC
1 ATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAAC--ATTAAAATTGGAACGAAATGGAC
**
24249183 TGTAATGCCAAACTAC
64 TGTAACACCAAACTAC
24249199 CCAGCCAAAC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
85 2 0.03
86 1 0.02
87 63 0.95
ACGTcount: A:0.41, C:0.14, G:0.15, T:0.30
Consensus pattern (87 bp):
ATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAACATTAAAATTGGAACGAAATGGACTG
TAACACCAAACTACTTTTCCAA
Found at i:24249207 original size:87 final size:87
Alignment explanation
Indices: 24249012--24249207 Score: 198
Period size: 87 Copynumber: 2.2 Consensus size: 87
24249002 TAAACTACCC
* * * *
24249012 TGCCAAAACTACCCTGCTAATATTTGCTTAAATGCAAAATAAAGAGAACATTTCTATTAACATTC
1 TGCC-AAACTACCCTGCCAA-ATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAACATTA
*
24249077 AAATTGGAACGAAATGGACTGTCA
64 AAATTGGAACGAAATGGACTGTAA
** ** * * * *
24249101 CACCAAACTACTTTTCCAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTA-T-ACGTATTA
1 TGCCAAACTACCCTGCCAAATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAAC--ATTA
* *
24249164 AAATTGGGATGAAATGGACTGTAA
64 AAATTGGAACGAAATGGACTGTAA
*
24249188 TGCCAAACTACCCAGCCAAA
1 TGCCAAACTACCCTGCCAAA
24249208 CTGCCCTGCC
Statistics
Matches: 84, Mismatches: 21, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
85 2 0.02
86 1 0.01
87 68 0.81
88 11 0.13
89 2 0.02
ACGTcount: A:0.40, C:0.18, G:0.14, T:0.28
Consensus pattern (87 bp):
TGCCAAACTACCCTGCCAAATTTGATTAAATGAAAAATAAAGAGAACATTTCTATTAACATTAAA
ATTGGAACGAAATGGACTGTAA
Found at i:24249381 original size:87 final size:88
Alignment explanation
Indices: 24249202--24249384 Score: 242
Period size: 87 Copynumber: 2.1 Consensus size: 88
24249192 AAACTACCCA
* *
24249202 GCCAAACTGCCCTGCCAAAATTAGATTGAATGCAAAATTAATAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* * * *
24249267 ATTAGGAGGGAATTGATTGTCAG
66 ATTAGGACGAAATGGACTGTCAG
* * * *
24249290 GCCAAACTGCCTTGCTAAAATT-CATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* **
24249354 ATTGGGACGAAATGGACTGTCTT
66 ATTAGGACGAAATGGACTGTCAG
24249377 GCCAAACT
1 GCCAAACT
24249385 ACTCATCCAA
Statistics
Matches: 82, Mismatches: 13, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
87 62 0.76
88 20 0.24
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (88 bp):
GCCAAACTGCCCTGCCAAAATTACATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTAGGACGAAATGGACTGTCAG
Found at i:24249668 original size:101 final size:101
Alignment explanation
Indices: 24249291--24249784 Score: 370
Period size: 101 Copynumber: 4.9 Consensus size: 101
24249281 GATTGTCAGG
* * * * * *
24249291 CCAAACTGCCTTGCTAAAA-TTCATTGAATGCAAAATTAAGAGGACATTTCTCTAAGCATTCAAA
1 CCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * *
24249355 TTGGGACGAAATGGACTGTCTTGCCAAACTA-CTCAT
66 TTGGGACGAAATGGACTATCATGCCAAACTACCT-AA
* * * * * *** **
24249391 CCAAACTTCCCTACCAAAATTTGGTTGAATGCAAATTTTTTAGGACATTTTTATAATTATTCAAA
1 CCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * * *
24249456 TTGGGACTAAATGAACTATCATTCCAAACTACC-CA
66 TTGGGACGAAATGGACTATCATGCCAAACTACCTAA
* * * * *
24249491 GCAAACAGCCCTGCCAAAA-TTGATTGAAA-GCAAAAATAAGAGGACGTTTATATAAGCATTCAA
1 CCAAACTGCCCTGCCAAAATTTGATT-AAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
* * * **
24249554 ATTGCGACAAAATGGCCTATCATGGAAAACTACCTAA
65 ATTGGGACGAAATGGACTATCATGCCAAACTACCTAA
* * * * *
24249591 CCAAACTGCTCTGCCAAAATTTGCTTAAATGGAAAATTAAGAGGACATTTTTATAAGCATTCGAT
1 CCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* ** * * *
24249656 TTGGGACGAAATGGATTGCCATGACAAACTGCCCT-G
66 TTGGGACGAAATGGACTATCATGCCAAACT-ACCTAA
* * ** * * ** * * * *
24249692 CCAAACTACCCTGCCAATATTTGCCTGAATGCAAAATAAAGAAAAAATGTCTATTAGCATTCAAA
1 CCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
* * ** *
24249757 TTGGAACAAAATAAACTGTCATGCCAAA
66 TTGGGACGAAATGGACTATCATGCCAAA
24249785 ATTTGATTTA
Statistics
Matches: 301, Mismatches: 86, Indels: 13
0.75 0.22 0.03
Matches are distributed among these distances:
99 57 0.19
100 52 0.17
101 188 0.62
102 4 0.01
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (101 bp):
CCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAA
TTGGGACGAAATGGACTATCATGCCAAACTACCTAA
Found at i:24250136 original size:100 final size:101
Alignment explanation
Indices: 24249943--24250136 Score: 268
Period size: 100 Copynumber: 1.9 Consensus size: 101
24249933 GTTGCAATGA
* * ** *
24249943 CAAACTACCCAGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTA
1 CAAACTACCCAGCCAAACTGCCATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTATA
* *
24250008 TAAGCATTCAAATTGAGACGAAACGGACTATTATTC
66 TAAACATTCAAATTGAGACAAAACGGACTATTATTC
24250044 CAAACTACCCAGCCAAACTGCTC-TGCCAAAA-TTGATTGAAAGCAAAAATAAGAGGACATTTAT
1 CAAACTACCCAGCCAAACTGC-CATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTAT
* *
24250107 ATAAATATTCAAATTGTA-ACAAAATGGACT
65 ATAAACATTCAAATTG-AGACAAAACGGACT
24250137 GTCATGCAAA
Statistics
Matches: 82, Mismatches: 9, Indels: 5
0.85 0.09 0.05
Matches are distributed among these distances:
100 51 0.62
101 30 0.37
102 1 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.25
Consensus pattern (101 bp):
CAAACTACCCAGCCAAACTGCCATGCCAAAATTTGATTGAAAGCAAAAATAAGAGGACATTTATA
TAAACATTCAAATTGAGACAAAACGGACTATTATTC
Found at i:24250149 original size:100 final size:97
Alignment explanation
Indices: 24249853--24251299 Score: 399
Period size: 101 Copynumber: 15.1 Consensus size: 97
24249843 TTGTCTATTA
* * *
24249853 AGCCAAACTGCCCTGCTAAAAGTGATTGAATG-ATAAATTAAGAGGATATTTATATAAGAATTCA
1 AGCCAAACTG-CCTGCCAAAATTGATTGAATGCA-AAATTAAGAGGACATTTATATAA-AATTCA
* * **
24249917 AATTAGGATGAAATGGGTTG-CAATG-ACAAACTACCC
63 AATT-GAACGAAATGGACTGTC-ATGCA-AAACTACCC
* * * *
24249953 AGCCAAACTGCCATGCCAAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCA
1 AGCCAAACTGCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCA
* * * * *
24250018 AATTGAGACGAAACGGACTATTATTCCAAACTACCC
63 AATTGA-ACGAAATGGACTGTCATGCAAAACTACCC
* *
24250054 AGCCAAACTGCTCTGCCAAAATTGATTGAAAGCAAAAATAAGAGGACATTTATATAAATATTCAA
1 AGCCAAACTGC-CTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAA-ATTCAA
*
24250119 ATTGTAACAAAATGGACTGTCATGCAAAACT----
64 ATTG-AACGAAATGGACTGTCATGCAAAACTACCC
* ** * * * ** *
24250150 -G-----C-G-CTGCCAATATTTGCGTGAGA-GAAAAACTAAGAGGACATTTTTACTACCATTTA
1 AGCCAAACTGCCTGCCAA-AATTGATTGA-ATGCAAAATTAAGAGGACATTTATA-TAAAATTCA
** *
24250206 AATTGGAAAAAAATGGACTGTCATGCCAAACT----
63 AATT-GAACGAAATGGACTGTCATGCAAAACTACCC
* * * * * * *
24250238 ------ACT--TTGCCAAAATTTGATTTAATGCAGAATTAATAGGACAATTCTATAAGCATTCAA
1 AGCCAAACTGCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCAA
** * *
24250295 ATTGAGACGAAATTAACTGTCAAGCCAAACT----
64 ATTGA-ACGAAATGGACTGTCATGCAAAACTACCC
* * *
24250326 A--C---CT---TACTAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCAA-TCA
1 AGCCAAACTGCCTGCCAAAATTGATTGAATGCA-AAATTAAGAGGACATTTATATAA--AATTCA
* * *
24250381 AATTGGGACGAAATGGACTGTCATGCCAAACTAACC
63 AATT-GAACGAAATGGACTGTCATGCAAAACTACCC
* * * *
24250417 AGCCAAACTGCCCTGCTAAAATTTTG-TTCAATGCAAATTTAAGAGGACATTTTTATAAACATTC
1 AGCCAAACTG-CCTGCCAAAA--TTGATTGAATGCAAAATTAAGAGGACATTTATATAAA-ATTC
* * *
24250481 AAATTTGGACGAAATGGACTGTCAAT-CCAAACTATCC
62 AAA-TTGAACGAAATGGACTGTC-ATGCAAAACTACCC
* * * ** * * *
24250518 AGCCAAACTGCCCTACCAATATTAATCAAAAGCAAAAAT-A-A-GACATTTATATAAGGATTCAA
1 AGCCAAACTG-CCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCAA
* *
24250580 ATTGTGAA-AAAATAGACTGTCATGCAAAACTACCC
64 A-T-TGAACGAAATGGACTGTCATGCAAAACTACCC
* * * * * *
24250615 AACCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATGCA
1 AGCCAAACTGCC-TGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCA
* * * *
24250680 ATTTGGGATGAAATGGATTGTCATG------T----
63 AATT-GAACGAAATGGACTGTCATGCAAAACTACCC
* * ** *** ** ** * ** * *
24250706 ---CAACCTGCCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTACTA-GCATTC
1 AGCCAAACTG-CCTGCCAA-AATTGATTGAATGC-AAA-ATTAAGAGGACATTTA-TATAAAATT
* * * * *
24250767 AAATTGGAACGAAATGGACTTTCATGCCAAACT----
61 CAAATTGAACGAAATGGACTGTCATGCAAAACTACCC
* ** * * * * *
24250800 ------ACT--CTGCCAATATTTGATTGAATAAAAAATT-AGAAGACATTTTTGTAAGCATTCAG
1 AGCCAAACTGCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCAA
* *
24250856 ATTGGGACGAAATGGACTGTAATGCAAAACTACCC
64 ATT-GAACGAAATGGACTGTCATGCAAAACTACCC
** ** * * *
24250891 AGCCAAACCACCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTC
1 AGCCAAA-CTGCCTGCCAAAAT-TG-ATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTC
* * * * *
24250954 AAATTGGGACAAAATGGACTATAATGAAAAACTACCC
62 AAATT-GAACGAAATGGACTGTCATGCAAAACTACCC
* * * **
24250991 AGCCAAACTGCCATGCCAAAATTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCA
1 AGCCAAACTGCC-TGCCAAAATTGATTGAATGCAAAATTAAG-AGGACATTTATATAA-AATTCA
* **
24251055 AATTGAGACAAAATGGGTTGTCATGCAAAACTACCC
63 AATTGA-ACGAAATGGACTGTCATGCAAAACTACCC
* ** * * *
24251091 AACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCA
1 AGCCAAACTG-CCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTATATAA-AATTCA
* * * * *
24251156 ATTTGGGAGGAAATTGACTGTCATGTC-AAACTACCT
63 AATT-GAACGAAATGGACTGTCATG-CAAAACTACCC
* * * * * * * *
24251192 TGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCAT-TAACATTT
1 AGCCAAAC-TGCCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGACATTT--ATATAAAATTC
* * * *
24251256 AAATTGGAACGAAATAGACTATCATGCCAAACTACTC
62 AAATT-GAACGAAATGGACTGTCATGCAAAACTACCC
*
24251293 TGCCAAA
1 AGCCAAA
24251300 ATTTGATTTA
Statistics
Matches: 1025, Mismatches: 222, Indels: 199
0.71 0.15 0.14
Matches are distributed among these distances:
84 1 0.00
85 7 0.01
86 5 0.00
87 98 0.10
88 178 0.17
89 18 0.02
90 8 0.01
91 5 0.00
93 1 0.00
94 1 0.00
95 2 0.00
96 6 0.01
97 57 0.06
98 21 0.02
99 26 0.03
100 245 0.24
101 326 0.32
102 19 0.02
103 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (97 bp):
AGCCAAACTGCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTATATAAAATTCAAAT
TGAACGAAATGGACTGTCATGCAAAACTACCC
Found at i:24250248 original size:464 final size:461
Alignment explanation
Indices: 24249778--24250610 Score: 1199
Period size: 464 Copynumber: 1.8 Consensus size: 461
24249768 TAAACTGTCA
* * *
24249778 TGCCAAAATTTGATTTAATGCAAAATT-ATAAGGACATTTATATAAGCATTCGAATTGGGACGAA
1 TGCCAAAATTTGATTTAATGCAAAATTAAT-AGGACAATTATATAAGCATTCAAATTGAGACGAA
** * * * *
24249842 ATTGTCTATTAAGCCAAACTGCCCTGCTAAAAGTGATTGAATGATAAATTAAGAGGATATTTATA
65 ATTAACTATCAAGCCAAACTACCCTACTAAAAGTGATTGAATGATAAATTAAGAGGACATTTATA
* ** *
24249907 TAAG-AATTCAAATTAGGATGAAATGGGTTG-CAATGACAAACTACCCAGCCAAACTGCCATGCC
130 TAAGCAA-TCAAATTAGGACGAAATGGACTGTC-ATGACAAACTAACCAGCCAAACTGCCATGCC
* *
24249970 AAAATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGCATTCAAA-TTGAGACGAAACGG
193 AAAATTTGGTTCAATGCAAATTTAAGAGGACATTTTTATAAACATTCAAATTTG-GACGAAACGG
* * * * * **
24250034 ACTATTATTCCAAACTACCCAGCCAAACTGCTCTGCCAAAATTGATTGAAAGCAAAAATAAGAGG
257 ACTATCAATCCAAACTACCCAGCCAAACTGCCCTACCAAAATTAATCAAAAGCAAAAAT-A-A-G
* *
24250099 ACATTTATATAAATATTCAAATTGT-AACAAAATGGACTGTCATGCAAAACTGCGCTGCCAATAT
319 ACATTTATATAAAGATTCAAATTGTGAA-AAAATAGACTGTCATGCAAAACTGCGCTGCCAATAT
24250163 TTGCGTGAGAGAAAAACTAAGAGGACATTTTTACTACCATTTAAATTGGAAAAAAATGGACTGTC
383 TTGCGTGAGAGAAAAACTAAGAGGACATTTTTACTACCATTTAAATTGGAAAAAAATGGACTGTC
24250228 ATGCCAAACTACTT
448 ATGCCAAACTACTT
* *
24250242 TGCCAAAATTTGATTTAATGCAGAATTAATAGGACAATTCTATAAGCATTCAAATTGAGACGAAA
1 TGCCAAAATTTGATTTAATGCAAAATTAATAGGACAATTATATAAGCATTCAAATTGAGACGAAA
* * * *
24250307 TTAACTGTCAAGCCAAACTACCTTACTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTAT
66 TTAACTATCAAGCCAAACTACCCTACTAAAAGTGATTGAATGATAAATTAAGAGGACATTTATAT
* * * *
24250372 AAGCAATCAAATTGGGACGAAATGGACTGTCATGCCAAACTAACCAGCCAAACTGCCCTGCTAAA
131 AAGCAATCAAATTAGGACGAAATGGACTGTCATGACAAACTAACCAGCCAAACTGCCATGCCAAA
* * *
24250437 ATTTTGTTCAATGCAAATTTAAGAGGACATTTTTATAAACATTCAAATTTGGACGAAATGGACTG
196 ATTTGGTTCAATGCAAATTTAAGAGGACATTTTTATAAACATTCAAATTTGGACGAAACGGACTA
* *
24250502 TCAATCCAAACTATCCAGCCAAACTGCCCTACCAATATTAATCAAAAGCAAAAATAAGACATTTA
261 TCAATCCAAACTACCCAGCCAAACTGCCCTACCAAAATTAATCAAAAGCAAAAATAAGACATTTA
*
24250567 TATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACT
326 TATAAAGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACT
24250611 ACCCAACCAA
Statistics
Matches: 324, Mismatches: 40, Indels: 13
0.86 0.11 0.03
Matches are distributed among these distances:
461 46 0.14
462 3 0.01
463 1 0.00
464 266 0.82
465 8 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (461 bp):
TGCCAAAATTTGATTTAATGCAAAATTAATAGGACAATTATATAAGCATTCAAATTGAGACGAAA
TTAACTATCAAGCCAAACTACCCTACTAAAAGTGATTGAATGATAAATTAAGAGGACATTTATAT
AAGCAATCAAATTAGGACGAAATGGACTGTCATGACAAACTAACCAGCCAAACTGCCATGCCAAA
ATTTGGTTCAATGCAAATTTAAGAGGACATTTTTATAAACATTCAAATTTGGACGAAACGGACTA
TCAATCCAAACTACCCAGCCAAACTGCCCTACCAAAATTAATCAAAAGCAAAAATAAGACATTTA
TATAAAGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTGCGCTGCCAATATTTGCGTGA
GAGAAAAACTAAGAGGACATTTTTACTACCATTTAAATTGGAAAAAAATGGACTGTCATGCCAAA
CTACTT
Found at i:24250276 original size:88 final size:87
Alignment explanation
Indices: 24250069--24250413 Score: 288
Period size: 88 Copynumber: 3.9 Consensus size: 87
24250059 AACTGCTCTG
* * * ** * *
24250069 CCAAAATTGATTGAAAGCA-AAAATAAGAGGACATTTATATAAATATTCAAATTGTAACAAAATG
1 CCAAAATTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATG
* * *
24250133 GACTGTCATGCAAAACTGCGC-TG
65 GACTGTCATGCCAAACTAC-CTTA
* ** * * * * * **
24250156 CCAATATTTGCGTGAGA-GAAAAACTAAGAGGACATTTTTACT-ACCATTTAAATTGGAAAAAAA
1 CCAA-AATTGATTGA-ATGATAAATTAAGAGGACATTTCTA-TAAGCATTCAAATTGGAACGAAA
* *
24250219 TGGACTGTCATGCCAAACTACTTTG
63 TGGACTGTCATGCCAAACTACCTTA
* * * *
24250244 CCAAAATTTGATTTAATGCA-GAATTAATAGGACAATTCTATAAGCATTCAAATT-GAGACGAAA
1 CCAAAA-TTGATTGAATG-ATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGA-ACGAAA
** *
24250307 TTAACTGTCAAGCCAAACTACCTTA
63 TGGACTGTCATGCCAAACTACCTTA
* * *
24250332 CTAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCAATCAAATTGGGACGAAATGG
1 CCAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATGG
24250397 ACTGTCATGCCAAACTA
66 ACTGTCATGCCAAACTA
24250414 ACCAGCCAAA
Statistics
Matches: 205, Mismatches: 41, Indels: 24
0.76 0.15 0.09
Matches are distributed among these distances:
86 1 0.00
87 73 0.36
88 128 0.62
89 3 0.01
ACGTcount: A:0.42, C:0.15, G:0.16, T:0.27
Consensus pattern (87 bp):
CCAAAATTGATTGAATGATAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGAACGAAATGG
ACTGTCATGCCAAACTACCTTA
Found at i:24250376 original size:87 final size:88
Alignment explanation
Indices: 24250216--24250413 Score: 256
Period size: 87 Copynumber: 2.3 Consensus size: 88
24250206 AATTGGAAAA
* * * * * *
24250216 AAATGGACTGTCATGCCAAACTACTTTGCCAAAATTTGATTTAATGCAGAATTAATAGGACAATT
1 AAATGAACTGTCATGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGACAATT
*
24250281 CTATAAGCATTCAAATTGAGACG
66 CTATAAGCAATCAAATTGAGACG
* * * *
24250304 AAATTAACTGTCAAGCCAAACTACCTTACTAAAA-TTGATTGAATG-ATAAATTAAGAGGACATT
1 AAATGAACTGTCATGCCAAACTACCTTACCAAAATTTGATTGAATGCA-AAATTAAGAGGACAAT
*
24250367 TCTATAAGCAATCAAATTGGGACG
65 TCTATAAGCAATCAAATTGAGACG
*
24250391 AAATGGACTGTCATGCCAAACTA
1 AAATGAACTGTCATGCCAAACTA
24250414 ACCAGCCAAA
Statistics
Matches: 94, Mismatches: 15, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
86 1 0.01
87 65 0.69
88 28 0.30
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (88 bp):
AAATGAACTGTCATGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGACAATT
CTATAAGCAATCAAATTGAGACG
Found at i:24250807 original size:88 final size:87
Alignment explanation
Indices: 24250617--24250896 Score: 251
Period size: 88 Copynumber: 3.2 Consensus size: 87
24250607 AACTACCCAA
* * * * * * * *
24250617 CCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATGCAAT
1 CCAAACTACCCTGCCAAGATTTGATTGAAT-GAAAAATAAGAGAACATTTCTATAAGCATTCAAA
*
24250682 TTGGGATGAAATGGA-TTGTCATG
65 TTGGGACGAAATGGACTT-TCATG
* * * ** *
24250705 TCAACCTGCCCTGCCAAGATTTTCTTGAATGCAAAATAAAGAGAACATTTCTACT-AGCATTCAA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAAT-AAGAGAACATTTCTA-TAAGCATTCAA
*
24250769 ATTGGAACGAAATGGACTTTCATG
64 ATTGGGACGAAATGGACTTTCATG
* * * * * * *
24250793 CCAAACTACTCTGCCAATATTTGATTGAATAAAAAATTAGA-AGACATTTTTGTAAGCATTCAGA
1 CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATAAGAGA-ACATTTCTATAAGCATTCAAA
* *
24250857 TTGGGACGAAATGGACTGTAATG
65 TTGGGACGAAATGGACTTTCATG
* *
24250880 CAAAACTACCCAGCCAA
1 CCAAACTACCCTGCCAA
24250897 ACCACCCTGC
Statistics
Matches: 154, Mismatches: 33, Indels: 11
0.78 0.17 0.06
Matches are distributed among these distances:
86 2 0.01
87 58 0.38
88 91 0.59
89 3 0.02
ACGTcount: A:0.37, C:0.17, G:0.17, T:0.28
Consensus pattern (87 bp):
CCAAACTACCCTGCCAAGATTTGATTGAATGAAAAATAAGAGAACATTTCTATAAGCATTCAAAT
TGGGACGAAATGGACTTTCATG
Found at i:24251187 original size:101 final size:100
Alignment explanation
Indices: 24250792--24251654 Score: 473
Period size: 100 Copynumber: 8.9 Consensus size: 100
24250782 GGACTTTCAT
* * * ** * * * *
24250792 GCCAAACTACTCTGCCAATATTTGATTGAATAAAAAATT-AGAAGACATTTTTGTAAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
24250856 ATTGGGACGAAATGGACTGTAATGCAAAACTACCCA
66 ATTGGGACGAAATGGACTGTCATGC-AAACTACCCA
** * ** * *
24250892 GCCAAACCACCCTGCCAAAATATGAATT-AATGC-ACTTTAAGAGAACATTTTTATAAGCATTCA
1 GCCAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
* * * *
24250955 AATTGGGACAAAATGGACTATAATGAAAAACTACCCA
65 AATTGGGACGAAATGGACTGTCATG-CAAACTACCCA
* * * * * *
24250992 GCCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAAAT-AGAAGAATATTTATATAAGCTTTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA
* * **
24251055 AATTGAGACAAAATGGGTTGTCATGCAAAACTACCCA
65 AATTGGGACGAAATGGACTGTCATGC-AAACTACCCA
* ** *
24251092 ACCAAACTGCCCTATCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * **
24251157 TTTGGGAGGAAATTGACTGTCATGTCAAACTACCTT
66 ATTGGGACGAAATGGACTGTCATG-CAAACTACCCA
* * * * * * *
24251193 GCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAA-CATTTA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
* *
24251257 AATTGGAACGAAATAGAC--T-AT-C--A-T-----
65 AATTGGGACGAAATGGACTGTCATGCAAACTACCCA
* * * *
24251281 GCCAAACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24251346 ATTGGAATG-AA---ACTGAC-TG---AC-A---A
66 ATTGGGACGAAATGGACTGTCATGCAAACTACCCA
* * * * ** ** * * *
24251369 GCCAAACTACCTTGCTAAAA-TTGATTGATTGATAAATTAAGATAACATTTTTACAAACATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24251433 ATTGGGACAAAATGGACTGTAATGCCAAACAACCTA
66 ATTGGGACGAAATGGACTGTCATG-CAAACTACCCA
* * * * * * * * *
24251469 GTCAAATTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAAAAAAGACATTTTTA-ATAGCATT
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATT--AAGAGGACATTTCTATA-AGCATT
* * *
24251533 TAAATTGGAATGAAATGGAC--T-AT-C--A-T-----
63 CAAATTGGGACGAAATGGACTGTCATGCAAACTACCCA
* * * * * *
24251559 GCCAAACTACTCTGGCAAAATTTGATTTAATGCAAAATTAAAAGGAAATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24251624 ATTGGGACAAAATTGTCTGTCAAGCCAAACT
66 ATTGGGACGAAATGGACTGTCATG-CAAACT
24251655 GCCCTGCTAA
Statistics
Matches: 585, Mismatches: 133, Indels: 94
0.72 0.16 0.12
Matches are distributed among these distances:
84 2 0.00
86 2 0.00
87 46 0.08
88 110 0.19
89 1 0.00
90 30 0.05
91 5 0.01
92 2 0.00
93 2 0.00
94 1 0.00
95 1 0.00
96 5 0.01
97 1 0.00
98 6 0.01
99 13 0.02
100 177 0.30
101 141 0.24
102 7 0.01
103 33 0.06
ACGTcount: A:0.40, C:0.17, G:0.15, T:0.28
Consensus pattern (100 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGGACGAAATGGACTGTCATGCAAACTACCCA
Found at i:24251460 original size:87 final size:88
Alignment explanation
Indices: 24251192--24251739 Score: 268
Period size: 88 Copynumber: 6.1 Consensus size: 88
24251182 CAAACTACCT
* * * * * * * ** *
24251192 TGCCAAACTTCC-CTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCATTAACATTT
1 TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTACAAACATTC
* * *
24251256 AAATTGGAACGAAATAGACTATCA
66 AAATTGGAACAAAAT-GACTGTAA
* * *
24251280 TGCCAAACTA-CTCTGCCAAAATTTGATTTAATGCAAAATTAAGAAGACATTTCTATAAGCATTC
1 TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTACAAACATTC
* *
24251344 AAATTGGAATGAAACTGACTG-ACA
66 AAATTGGAA-CAAAATGACTGTA-A
* * * *
24251368 AGCCAAACTACCT-TGCTAAAA-TTGATTGATTG-ATAAATTAAGATA-ACATTTTTACAAACAT
1 TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCA-AAATTAAGA-AGACATTTCTACAAACAT
*
24251429 TCAAATTGGGACAAAATGGACTGTAA
64 TCAAATTGGAACAAAAT-GACTGTAA
* * * * * *
24251455 TGCCAAACAACCTAGTCAAATTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAAAAAAGACAT
1 TGCC--A-AA-CTA--C------CTCTGCCAAAATTTGATTGAATGCAAAATT--AAGAAGACAT
* * * ** * *
24251520 TTTTA-ATAGCATTTAAATTGGAATGAAATGGACTATCA
52 TTCTACA-AACATTCAAATTGGAACAAAAT-GACTGTAA
* * * * *
24251558 TGCCAAACTA-CTCTGGCAAAATTTGATTTAATGCAAAATTAA-AAGGAAATTTCTATAAGCATT
1 TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTACAAACATT
* *
24251621 CAAATTGGGACAAAATTGTCTGTCAA
65 CAAATTGGAACAAAA-TGACTGT-AA
* * * * *
24251647 -GCCAAACTGCC-CTG-CTAAA-TTGAATG-AT---AAATTAAGAGGACATTTCTACAAGCATTC
1 TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTACAAACATTC
* ** *
24251704 AAATTGGGATGAAATGGACTGTCA
66 AAATTGGAACAAAAT-GACTGTAA
24251728 TGCCAAACTACC
1 TGCCAAACTACC
24251740 AAGCCAAACA
Statistics
Matches: 357, Mismatches: 68, Indels: 76
0.71 0.14 0.15
Matches are distributed among these distances:
81 2 0.01
82 51 0.14
83 1 0.00
85 2 0.01
86 10 0.03
87 57 0.16
88 125 0.35
89 10 0.03
90 25 0.07
91 3 0.01
93 1 0.00
99 4 0.01
100 8 0.02
101 15 0.04
102 3 0.01
103 40 0.11
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (88 bp):
TGCCAAACTACCTCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTACAAACATTC
AAATTGGAACAAAATGACTGTAA
Found at i:24251486 original size:577 final size:573
Alignment explanation
Indices: 24250354--24251466 Score: 1226
Period size: 577 Copynumber: 1.9 Consensus size: 573
24250344 GAATGATAAA
* * * * **
24250354 TTAAGAGGACATTTCTATAAGCAATCAAATTGGGACGAAATGGACTGTCATGCCAAACTAACCAG
1 TTAAGAGAACATTTCTATAAGCAATCAAATTGGGACAAAATGGACTATAATGAAAAACTAACCAG
* * ** *
24250419 CCAAACTGCCCTGCTAAAATTTTGTTCAATGCAAATTTAAGAGGACATTTTTATAAACATTCAAA
66 CCAAACTGCCATGCCAAAA-TTTGTTCAATGCAAAAATAAGAAGACATTTTTATAAACATTCAAA
* * * * *
24250484 TTTGGACGAAATGGACTGTCAATCCAAACTATCCAGCCAAACTGCCCTACCAATATTAATCAAAA
130 TTTGGACAAAATGGACTGTCAATCAAAACTACCCAACCAAACTGCCCTACCAAAATTAATCAAAA
* *
24250549 GCAAAAATAAGACATTTATATAAGGATTCAAATTGTGAAAAAATAGACTGTCATGCAAAACTACC
195 GCAAAAATAAGACATTTATATAAGCATTCAAATTGGGAAAAAATAGACTGTCATGCAAAACTACC
* * *
24250614 CAACCAAACTGCCTTGCCAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATGC
260 CAACCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCCATAAGCATGC
* * * * * * * * * * **
24250679 AATTTGGGATGAAATGGATTGTCATGTCAACCTGCCCTGCCAAGATTTTCTTGAATGCAAAATAA
325 AAATTGGAACGAAATAGACTATCATGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATAA
** *
24250744 AGAGAACATTTCTACTAGCATTCAAATTGGAACGAAATGGACTTTCATGCCAAACTACTCTGCCA
390 AGAGAACATTTCTACTAGCATTCAAATTGGAACGAAATGGACTGACAAGCCAAACTACTCTGCCA
* ** * * *
24250809 ATATTTGATTGAATAAAAAATTAGAAGACATTTTTGTAAGCATTCAGATTGGGACGAAATGGACT
455 ATAATTGATTGAATAAAAAATTAGAAGACATTTTTACAAACATTCAAATTGGGACAAAATGGACT
*
24250874 GTAATGCAAAACTACCCAGCCAAACCACCCTGCCAAAATATGAATTAATGCACT
520 GTAATGCAAAACAACCCAGCCAAACCACCCTGCCAAAATATGAATTAATGCACT
* * *
24250928 TTAAGAGAACATTTTTATAAGCATTCAAATTGGGACAAAATGGACTATAATGAAAAACTACCCAG
1 TTAAGAGAACATTTCTATAAGCAATCAAATTGGGACAAAATGGACTATAATGAAAAACTAACCAG
* * *
24250993 CCAAACTGCCATGCCAAAA-TTGATTGAATGCAAAAAT-AGAAGA-ATATTTATATAAGCTTTCA
66 CCAAACTGCCATGCCAAAATTTG-TTCAATGCAAAAATAAGAAGACAT-TTT-TATAAACATTCA
** * *
24251055 AA-TTGAGACAAAATGGGTTGTC-ATGCAAAACTACCCAACCAAACTGCCCTATCAAAATTTGAT
128 AATTTG-GACAAAATGGACTGTCAAT-CAAAACTACCCAACCAAACTGCCCTACCAAAA-TTAAT
** * * * * * ** *
24251118 TGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGAGGAAATTGACTGTCATGTC
190 CAAAAGCAAAAAT-A-A-GACATTTATATAAGCATTCAAATTGGGAAAAAATAGACTGTCATG-C
*** * * * * * *
24251183 -AAACTACCTTGCCAAACTTCCCTGCCAATATTTGCTTGAGTGCAAAATTAAGAGGACTTTTCCA
251 AAAACTACCCAACCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCCA
** * *
24251247 TTAA-CATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATTTGATTTAA
316 -TAAGCATGCAAATTGGAACGAAATAGACTATCATGCCAAACTACCCTGCCAAAATTTGATTGAA
* *
24251311 TGCAAAATTAAGA-AGACATTTCTA-TAAGCATTCAAATTGGAATGAAACT-GACTGACAAGCCA
380 TGCAAAATAAAGAGA-ACATTTCTACT-AGCATTCAAATTGGAACGAAA-TGGACTGACAAGCCA
* * * *
24251373 AACTAC-CTTGCTAA-AATTGATTGATTGATAAATTAAGATA-ACATTTTTACAAACATTCAAAT
442 AACTACTC-TGCCAATAATTGATTGAATAAAAAATT-AGA-AGACATTTTTACAAACATTCAAAT
*
24251435 TGGGACAAAATGGACTGTAATGCCAAACAACC
504 TGGGACAAAATGGACTGTAATGCAAAACAACC
24251467 TAGTCAAATT
Statistics
Matches: 439, Mismatches: 83, Indels: 31
0.79 0.15 0.06
Matches are distributed among these distances:
571 2 0.00
572 16 0.04
573 63 0.14
574 85 0.19
575 1 0.00
576 20 0.05
577 246 0.56
578 6 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (573 bp):
TTAAGAGAACATTTCTATAAGCAATCAAATTGGGACAAAATGGACTATAATGAAAAACTAACCAG
CCAAACTGCCATGCCAAAATTTGTTCAATGCAAAAATAAGAAGACATTTTTATAAACATTCAAAT
TTGGACAAAATGGACTGTCAATCAAAACTACCCAACCAAACTGCCCTACCAAAATTAATCAAAAG
CAAAAATAAGACATTTATATAAGCATTCAAATTGGGAAAAAATAGACTGTCATGCAAAACTACCC
AACCAAACTGCCCTGCCAAAATTTGATTAAATGCAAAATTAAGAGGACATTTCCATAAGCATGCA
AATTGGAACGAAATAGACTATCATGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATAAA
GAGAACATTTCTACTAGCATTCAAATTGGAACGAAATGGACTGACAAGCCAAACTACTCTGCCAA
TAATTGATTGAATAAAAAATTAGAAGACATTTTTACAAACATTCAAATTGGGACAAAATGGACTG
TAATGCAAAACAACCCAGCCAAACCACCCTGCCAAAATATGAATTAATGCACT
Found at i:24251591 original size:278 final size:275
Alignment explanation
Indices: 24251108--24251764 Score: 844
Period size: 278 Copynumber: 2.4 Consensus size: 275
24251098 CTGCCCTATC
* * * *
24251108 AAAATTTGATTGAATG-TAAAATTAAGAGGACATTTCTATAAGCATTCAATTTGGGAGGAAATTG
1 AAAA-TTGATTG-ATGAT-AAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGACGAAATGG
* * *
24251172 ACTGTCATGTCAAACTACCTTGCCAAACTT-CCCTGCCAATATTTGCTTGAGTGCAAAATTAAGA
63 ACTGTCATGCCAAACTACCTAGCCAAA-TTGCCCTGCCAATATTTGCTTGAGTGCAAAATTAAAA
* *
24251236 GGACTTTTCCATTAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAA
127 AGACTTTTCCAATAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAA
* **
24251301 TTTGATTTAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGAATGAAACTGACTG
192 TTTGATTTAATGCAAAATTAA-AAGGAAATTTCTATAAGCATTCAAATTGGAACAAAACTGACTG
*
24251365 ACAAGCCAAACTACCTTGCT
256 ACAAGCCAAACTACCCTGCT
** * * *
24251385 AAAATTGATTGATTGATAAATTAAGATAACATTTTTACAAACATTCAAATTGGGACAAAATGGAC
1 AAAATTGATTGA-TGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGACGAAATGGAC
* * * *
24251450 TGTAATGCCAAACAACCTAGTCAAATTGCCCTGCCAATATTTGCTTGAGTGTAAAATTAAAAAAA
65 TGTCATGCCAAACTACCTAGCCAAATTGCCCTGCCAATATTTGCTTGAGTGCAAAATT--AAAAA
* * * * *
24251515 GACATTTT-TAATAGCATTTAAATTGGAATGAAATGGACTATCATGCCAAACTACTCTGGCAAAA
128 GAC-TTTTCCAATAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAA
* * * *
24251579 TTTGATTTAATGCAAAATTAAAAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATTGTCTGT
192 TTTGATTTAATGCAAAATTAAAAGGAAATTTCTATAAGCATTCAAATTGGAACAAAACTGACTGA
*
24251644 CAAGCCAAACTGCCCTGCT
257 CAAGCCAAACTACCCTGCT
*
24251663 -AAATTGA---ATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGATGAAATGGACT
1 AAAATTGATTGATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGACGAAATGGACT
* ** *
24251724 GTCATGCCAAACTACCAAGCCAAACAGCCCTGCCAAAATTT
66 GTCATGCCAAACTACCTAGCCAAATTGCCCTGCCAATATTT
24251765 TGTTCAATGC
Statistics
Matches: 328, Mismatches: 45, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
273 81 0.25
274 1 0.00
275 3 0.01
276 97 0.30
277 14 0.04
278 128 0.39
279 4 0.01
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (275 bp):
AAAATTGATTGATGATAAATTAAGAGGACATTTCTACAAGCATTCAAATTGGGACGAAATGGACT
GTCATGCCAAACTACCTAGCCAAATTGCCCTGCCAATATTTGCTTGAGTGCAAAATTAAAAAGAC
TTTTCCAATAACATTTAAATTGGAACGAAATAGACTATCATGCCAAACTACTCTGCCAAAATTTG
ATTTAATGCAAAATTAAAAGGAAATTTCTATAAGCATTCAAATTGGAACAAAACTGACTGACAAG
CCAAACTACCCTGCT
Found at i:24252056 original size:188 final size:186
Alignment explanation
Indices: 24251574--24252086 Score: 502
Period size: 188 Copynumber: 2.7 Consensus size: 186
24251564 ACTACTCTGG
* * * * *
24251574 CAAAATTTGATTTAATGCAAAATTAAAAGGAAATTTCTATAAGCATTCAAATTGGGACAAAATTG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGG
* * * * * *
24251639 -TCTGTCAAGCCAAACTGCCCTGCTAAATTGAAT-GAT--AAATTAAGAGGACATTTCTACAAGC
66 AT-TGTCATGTCAAACTGCCCTGCCAAATTGATTGGATGAAAAATAAGAGGACATTTCTATAAGC
* ** * *
24251700 ATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTACCAAGCCAAACAGCCCTGC
130 ATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAGCCAAACAGCCCTGC
* * *
24251757 CAAAATTTTG-TTCAATGCG-AATTTAAGAGGACATTTTTATAAGCATTCAAATTGGGACAAAAT
1 CAAAA-TTTGATTAAATG-GAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAAT
* * * * ** * * * * * *
24251820 GGAATGTC-TTTCCAAATTACCCAACCGAACTTAATAGAAAGAAAAAATAAGAGGACATTTATAT
64 GGATTGTCATGT-CAAACTGCCCTGCC-AAATTGATTGGATG-AAAAATAAGAGGACATTTCTAT
* *
24251884 AAGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACTGCCCAA-CCAAACTGCCCTGC
126 AAGCATTCAAATTGCGACAAAATGGAATGTCATGCAAAACT-ACCAAGCCAAACAGCCCTGC
* * * * *
24251945 CGAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAATTTAGGACTAAGTGG
1 CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGG
* * * *
24252010 ATTGTCATGTCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACCTTTCTATTA
66 ATTGTCATGTCAAACTGCCCTGCCAA-A-TTGATTGGATGAAAAAT-AAGAGGACATTTCTATAA
24252075 GCATTCAAATTG
128 GCATTCAAATTG
24252087 GAACGAAATA
Statistics
Matches: 258, Mismatches: 56, Indels: 26
0.76 0.16 0.08
Matches are distributed among these distances:
183 65 0.25
184 9 0.03
185 1 0.00
187 7 0.03
188 138 0.53
189 38 0.15
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (186 bp):
CAAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGG
ATTGTCATGTCAAACTGCCCTGCCAAATTGATTGGATGAAAAATAAGAGGACATTTCTATAAGCA
TTCAAATTGCGACAAAATGGAATGTCATGCAAAACTACCAAGCCAAACAGCCCTGC
Found at i:24252106 original size:88 final size:86
Alignment explanation
Indices: 24251931--24252201 Score: 278
Period size: 88 Copynumber: 3.1 Consensus size: 86
24251921 AACTGCCCAA
* * *
24251931 CCAAACTGCCCTGCCGAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAT
1 CCAAACTGCCCTGCC-AAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * *
24251996 TTAGGACTAAGTGGATTGTCATG
65 TT-GGACGAAATAGATTGTCATG
* * * * * * *
24252019 TCAAACTGCCCTGCCAATATTTGCTTGGATGAAAAATAAAGAGAACCTTTCTATTAGCATTCAAA
1 CCAAACTGCCCTGCCAA-ATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAA
24252084 TTGGAACGAAATAGACTT-TCATG
65 TTGG-ACGAAATAGA-TTGTCATG
* * *
24252107 CCAAACTGCTCCT-CCAACATTTGATTGAATGAAAAGTTAAGAGGACATTTCTGTAAGCATTTAA
1 CCAAACTGC-CCTGCCAA-ATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
24252171 ATTGGGACGAAAT-GTATTGTAATG
64 ATT-GGACGAAATAG-ATTGTCATG
*
24252195 CAAAACT
1 CCAAACT
24252202 ACCTAGCCAA
Statistics
Matches: 150, Mismatches: 26, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
87 7 0.05
88 136 0.91
89 7 0.05
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.30
Consensus pattern (86 bp):
CCAAACTGCCCTGCCAAATTTGATTGAATGAAAAATTAAGAGGACATTTCTATAAGCATTCAAAT
TGGACGAAATAGATTGTCATG
Found at i:24252651 original size:101 final size:101
Alignment explanation
Indices: 24252295--24253617 Score: 811
Period size: 101 Copynumber: 13.5 Consensus size: 101
24252285 TGACTGTCAG
* * * * * *
24252295 GCCAAGCTGCCCTGCTAAAA-TTCATTTAAAGCAAAATTAATAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24252359 ATTGGGACTAAATGGATTGTCATGCAAAACTACCCA
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * ** * * *
24252395 GCCAAATTTCCCTGCCACAATTTGATTGAATGC-ACTTTAAGAGGACATTTTTATCAGCATTCAG
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * *
24252459 ATTGAGACGAAATGGACTATAAAGCAAAATTACGCA
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
24252495 GCCAACCTACCCTGCCAAAA-TTGATTGAATGCAAAAATAGGAGAATATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24252559 ATTGGGACAAAAAGGGCTGTCATGCAAAACTACCCA
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * *
24252595 ACCAAATTGCCTTGTCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC-A
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24252659 ATTCGAGA-AGAAATGGTCTGTCATGTC-AAACTACCCT
66 ATT-GAGACA-AAATGGACTGTCATG-CAAAACTACCCA
* * * * **
24252696 GCCAAACTGCCCTGCCAATATTTGCTT-AAGTGTAAAATTAAGAGAACATTTCTATTAATAATT-
1 GCCAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATTAAGAGGACATTTCTA-TAAGCATTC
* *
24252759 AAATTG-GAACGAAATGGA-----ATG------T--CAA
64 AAATTGAG-ACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * *
24252784 GCCAAACTACTCTGTCAAAATTTGATTTAATGCAAAATTAAAAAGACATTTCTATAAGAATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24252849 ATTGGGACAAAAT----T-T-A--C--TA-TA--GA
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * ** * * * *
24252872 GCCAAGCTGCCCTACTAAAA-TTAATTGATTGATAAATTAAAATGACATTTCAATAAACATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24252936 ATTGGGACGAAATGGACTGTCATGCCAAACTACCAA
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * * * *
24252972 GCCAAGCTGCCCTACTAATATTTGGTTGAATGCAAATTTAAGAGGACATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24253037 ATTG-GA-ATGAAATGGGCTGTCATGCCAAACTACCCA
66 ATTGAGACA--AAATGGACTGTCATGCAAAACTACCCA
* * ** * * *
24253073 GCCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * ** *
24253138 TTTG-GAACGAAATGGATTGTCATGTTAAACTTCCCTA
66 ATTGAG-ACAAAATGGACTGTCATGCAAAACTACCC-A
* * * * *
24253175 G-CAAACTGCCCTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTCTATTATG-ATTCA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA-TAAGCATTCA
* *
24253238 AATTGGGACAAAATGCAC--T-AT-C---A-T-----
65 AATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
24253262 GCC-AACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTAAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ** * * * *
24253326 ATTGGGACAAAATTAACTGTTAAGCCAAACTACCCG
66 ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * * *
24253362 GCCAAACTGCCCTTCCAAAA-TTGATTGAAAGTAAAAATAAGAGGAAATTTATATAAGCATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
24253426 ATTGCA-ACAAAATGGACTGTCACGCAAAACTACCCA
66 ATTG-AGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * *
24253462 ACCAAACTGCCCTGCCAAACAAATATTGATTGAACGCAAAATTAATAAGACATTTGTATAAG-AG
1 GCCAAACTGCCCTGCC--A-AAAT-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-
** * * * * * *
24253526 TTTTAATTGGGACGAAATAGACTGTCATGCCAAATTATCCA
61 TTCAAATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
* * * * *
24253567 GCCAAATTACCTTG-GAAGAATTTGATTGAATGCAAAATTAAGAAGACATTT
1 GCCAAACTGCCCTGCCAA-AATTTGATTGAATGCAAAATTAAGAGGACATTT
24253618 GATAAACCAT
Statistics
Matches: 946, Mismatches: 211, Indels: 131
0.73 0.16 0.10
Matches are distributed among these distances:
86 3 0.00
87 119 0.13
88 72 0.08
89 4 0.00
90 2 0.00
91 2 0.00
92 1 0.00
93 2 0.00
94 2 0.00
95 2 0.00
96 3 0.00
97 1 0.00
98 4 0.00
99 13 0.01
100 257 0.27
101 362 0.38
102 22 0.02
103 3 0.00
104 1 0.00
105 71 0.08
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.28
Consensus pattern (101 bp):
GCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGAGACAAAATGGACTGTCATGCAAAACTACCCA
Found at i:24253353 original size:87 final size:88
Alignment explanation
Indices: 24253176--24253367 Score: 226
Period size: 87 Copynumber: 2.2 Consensus size: 88
24253166 ACTTCCCTAG
* * * * * * *
24253176 CAAACTGCCCTGCCAATATTTGCTTCAATGCAAAATTAAGAGCACATTTCTATTATGATTCAAAT
1 CAAACTACCCTGCCAAAATTTGATTCAATGCAAAATTAAGAGAACAATTCTATTAAGATTAAAAT
* *
24253241 TGGGACAAAATGCACTATCATGC
66 TGGGACAAAATGAACTATCAAGC
* *
24253264 C-AACTACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTA-TAAGCATTAAAA
1 CAAACTACCCTGCCAAAATTTGATTCAATGCAAAATTAAGAGAACAATTCTATTAAG-ATTAAAA
* * *
24253327 TTGGGACAAAATTAACTGTTAAGC
65 TTGGGACAAAATGAACTATCAAGC
*
24253351 CAAACTACCCGGCCAAA
1 CAAACTACCCTGCCAAA
24253368 CTGCCCTTCC
Statistics
Matches: 86, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
86 3 0.03
87 69 0.80
88 14 0.16
ACGTcount: A:0.40, C:0.20, G:0.13, T:0.27
Consensus pattern (88 bp):
CAAACTACCCTGCCAAAATTTGATTCAATGCAAAATTAAGAGAACAATTCTATTAAGATTAAAAT
TGGGACAAAATGAACTATCAAGC
Found at i:24253426 original size:577 final size:566
Alignment explanation
Indices: 24251867--24253443 Score: 1352
Period size: 577 Copynumber: 2.7 Consensus size: 566
24251857 AAAGAAAAAA
* * * *
24251867 TAAGAGGACATTTATATAAGCATTCAAATTGCGACA-AAATGGAATGTCATGCAAAACTGCCCAA
1 TAAGAGGACATTTTTATAAGCATTCAAATTG-GACAGAAATGGACTGTCATGCAAAACTACCCAG
* * * *
24251931 CCAAACTGCCCTGCCGAAATTTGATTAAATGGAAAATTAAGAGGACATTTCTATAAGCATTCAAT
65 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAT
* * * *
24251996 TTAGGACTAAGTGGATTGTCATG--------T-CAAACTGCCCTGCCAATATTTGCTTGGATGAA
130 TT-GGACAAAATGGATTGTCATGAAACTCCCTACAAACTGCCCTGCCAATATTTGCTTGAATGCA
* * * *
24252052 AAATAAAGAGAACCTTTCTATTAGCATTCAAATTGGAACGAAATAG-ACTTTCATGCCAAACTGC
194 AAATTAAGAGAACATTTCTATTAG-ATTCAAATTGGAACAAAAT-GCACTATCATGCCAAACTGC
* * * *
24252116 TCCT-CCAACATTTGATTGAATGAAAAGTTAAGAGGACATTTCTGTAAGCATTTAAATTGGGACG
257 T-CTGCCAAAATTTGATTTAATGAAAA-TTAAGAGAACATTTCTATAAGCA-TTAAATTGGGACG
* * * * *
24252180 AAATGTATTG-TAATGCAAAACTACCTAGCCAAACCGCTCTGCGAAAATTAGATTG-AA-TACAA
319 AAATGTAATGTTAA-GCCAAACTACC--GCCAAACTGC-CTTCCAAAATT-GATTGAAAGTA-AA
* * *** *
24252242 AATTAAGAAGATATTCCTATAAGCATTCAAATTGGGAGGGAATTGACTGTCAGGCCAAGCTGCCC
378 AA-TAAGAAGAAATTTCTATAAGCATTCAAATTGGGACAAAATTGACTATCAGGCCAAGCTGCCC
* * * * * * *
24252307 TGCTAAAATTCATTTAAAGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGACTAAAT
442 TACTAAAATTAATTGAAAGCAAAATTAAAAGGACATTTCAATAAACATTCAAATTGGGACGAAAT
* * * * * *
24252372 GGATTGTCATGCAAAACTACCCAGCCAAATTTCCCTGCCACAATTTGATTGAATGCACTT
507 GGACTGTCATGCAAAACTACCAAGCCAAACTGCCCTACCACAATTTGATTGAATGCAATT
* * * * * * *
24252432 TAAGAGGACATTTTTATCAGCATTCAGATTGAGAC-GAAATGGACTATAAAGCAAAATTACGCAG
1 TAAGAGGACATTTTTATAAGCATTCAAATTG-GACAGAAATGGACTGTCATGCAAAACTACCCAG
* * * * *
24252496 CCAACCTACCCTGCCAAAA-TTGATTGAATGCAAAAATAGGAGAATATTTCTATAAGCATTCAAA
65 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTC-AA
* * ** * * * * * *
24252560 TTGGGACAAAAAGGGCTGTCATGCAAAACTACCCAACCAAATTGCCTTGTCAAAATTTGATTGAA
129 TTTGGACAAAATGGATTGTCATG--AAACT-CCCTA-CAAACTGCCCTGCCAATATTTGCTTGAA
* * * *
24252625 TGCAAAATTAAGAGGACATTTCTATAAACATTC-AATTCGAGAAGAAATGGTCTGTCATGTCAAA
190 TGCAAAATTAAGAGAACATTTCTAT-TAGATTCAAATT-G-GAACAAA---------ATG-C--A
* * * * *
24252689 CTACCCTGCCAAACTGCCCTGCCAATATTTG-CTTAAGTGTAAAATTAAGAGAACATTTCTATTA
240 CTATCATGCCAAACTGCTCTGCCAAAATTTGATTTAA-TG-AAAATTAAGAGAACATTTCTA-TA
** * * * *
24252753 ATAATTAAATTGGAACGAAATGGAATGTCAAGCCAAACTA----C--TCTG---T-CAAAATTTG
302 AGCATTAAATTGGGACGAAATGTAATGTTAAGCCAAACTACCGCCAAACTGCCTTCCAAAA-TTG
* * * * * * * *
24252808 ATTTAATGCAAAATTAAAAAGACATTTCTATAAGAATTCAAATTGGGACAAAATTTACTAT-AGA
366 ATTGAAAGTAAAAATAAGAAGAAATTTCTATAAGCATTCAAATTGGGACAAAATTGACTATCAG-
** *
24252872 GCCAAGCTGCCCTACTAAAATTAATTGATTG-ATAAATTAAAATGACATTTCAATAAACATTCAA
430 GCCAAGCTGCCCTACTAAAATTAATTGAAAGCA-AAATTAAAAGGACATTTCAATAAACATTCAA
* * * *
24252936 ATTGGGACGAAATGGACTGTCATGCCAAACTACCAAGCCAAGCTGCCCTACTA-ATATTTGGTTG
494 ATTGGGACGAAATGGACTGTCATGCAAAACTACCAAGCCAAACTGCCCTACCACA-ATTTGATTG
24253000 AATGCAAATT
558 AATGC-AATT
* * *
24253010 TAAGAGGACATTTTTATAAGTATTCAAATTGGA-ATGAAATGGGCTGTCATGCCAAACTACCCAG
1 TAAGAGGACATTTTTATAAGCATTCAAATTGGACA-GAAATGGACTGTCATGCAAAACTACCCAG
* * * * * *
24253074 CCAAACTGCCCTGCCAAAATTTGATTGAACGTAAAATTAAGAGGATGTTTCTATGAGTAATCAAT
65 CCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAAT
* *
24253139 TTGGAACGAAATGGATTGTCATGTTAAACTTCCCTAGCAAACTGCCCTGCCAATATTTGCTTCAA
130 TTGG-ACAAAATGGATTGTCATG--AAAC-TCCCTA-CAAACTGCCCTGCCAATATTTGCTTGAA
* *
24253204 TGCAAAATTAAGAGCACATTTCTATTATGATTCAAATTGGGACAAAATGCACTATCATGCC-AAC
190 TGCAAAATTAAGAGAACATTTCTATTA-GATTCAAATTGGAACAAAATGCACTATCATGCCAAAC
* *
24253268 TACTCTGCCAAAATTTGATTTAATGCAAAATTAAGAGAACAATTCTATAAGCATTAAAATTGGGA
254 TGCTCTGCCAAAATTTGATTTAATG-AAAATTAAGAGAACATTTCTATAAGCATT-AAATTGGGA
*
24253333 CAAAAT-TAACTGTTAAGCCAAACTACCCGGCCAAACTGCCCTTCCAAAATTGATTGAAAGTAAA
317 CGAAATGTAA-TGTTAAGCCAAACTA-CC-GCCAAACTG-CCTTCCAAAATTGATTGAAAGTAAA
* * ** *
24253397 AATAAGAGGAAATTTATATAAGCATTCAAATTGCAACAAAATGGACT
378 AATAAGAAGAAATTTCTATAAGCATTCAAATTGGGACAAAATTGACT
24253444 GTCACGCAAA
Statistics
Matches: 782, Mismatches: 164, Indels: 120
0.73 0.15 0.11
Matches are distributed among these distances:
564 59 0.08
565 137 0.18
566 13 0.02
568 1 0.00
569 3 0.00
571 1 0.00
573 3 0.00
576 8 0.01
577 256 0.33
578 99 0.13
579 107 0.14
580 5 0.01
582 2 0.00
584 1 0.00
586 1 0.00
587 2 0.00
589 5 0.01
590 69 0.09
591 10 0.01
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.28
Consensus pattern (566 bp):
TAAGAGGACATTTTTATAAGCATTCAAATTGGACAGAAATGGACTGTCATGCAAAACTACCCAGC
CAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAATT
TGGACAAAATGGATTGTCATGAAACTCCCTACAAACTGCCCTGCCAATATTTGCTTGAATGCAAA
ATTAAGAGAACATTTCTATTAGATTCAAATTGGAACAAAATGCACTATCATGCCAAACTGCTCTG
CCAAAATTTGATTTAATGAAAATTAAGAGAACATTTCTATAAGCATTAAATTGGGACGAAATGTA
ATGTTAAGCCAAACTACCGCCAAACTGCCTTCCAAAATTGATTGAAAGTAAAAATAAGAAGAAAT
TTCTATAAGCATTCAAATTGGGACAAAATTGACTATCAGGCCAAGCTGCCCTACTAAAATTAATT
GAAAGCAAAATTAAAAGGACATTTCAATAAACATTCAAATTGGGACGAAATGGACTGTCATGCAA
AACTACCAAGCCAAACTGCCCTACCACAATTTGATTGAATGCAATT
Found at i:24253572 original size:105 final size:100
Alignment explanation
Indices: 24253435--24253622 Score: 214
Period size: 105 Copynumber: 1.8 Consensus size: 100
24253425 AATTGCAACA
* *
24253435 AAATGGACTGTCACGCAAAACTACCCAACCAAACTGCCCTGCCAAACAAATATTGATTGAACGCA
1 AAATAGACTGTCACGCAAAACTACCCAACCAAACTACCCTG--AAA-AAAT-TTGATTGAACGCA
*
24253500 AAATTAATAAGACATTTGTATAAGAGTTTTAATTGGGACG
62 AAATTAAGAAGACATTTG-ATAAGAGTTTTAATTGGGACG
* * * * * * * * * *
24253540 AAATAGACTGTCATGCCAAATTATCCAGCCAAATTACCTTGGAAGAATTTGATTGAATGCAAAAT
1 AAATAGACTGTCACGCAAAACTACCCAACCAAACTACCCTGAAAAAATTTGATTGAACGCAAAAT
24253605 TAAGAAGACATTTGATAA
66 TAAGAAGACATTTGATAA
24253623 ACCATAAAAG
Statistics
Matches: 70, Mismatches: 13, Indels: 5
0.80 0.15 0.06
Matches are distributed among these distances:
100 4 0.06
101 29 0.41
102 3 0.04
103 2 0.03
105 32 0.46
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.26
Consensus pattern (100 bp):
AAATAGACTGTCACGCAAAACTACCCAACCAAACTACCCTGAAAAAATTTGATTGAACGCAAAAT
TAAGAAGACATTTGATAAGAGTTTTAATTGGGACG
Found at i:24255072 original size:101 final size:100
Alignment explanation
Indices: 24254842--24255406 Score: 688
Period size: 101 Copynumber: 5.6 Consensus size: 100
24254832 GTGACCATCA
* * * * * * *
24254842 ACATTTTTATAAACATTCAAATTGGCACGAAATAGACTGTAATGTCAAACTACCCAACCAAACTG
1 ACATTTCTAT-AAGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* *
24254907 TCTTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
65 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * *
24254942 ACATTTTTATAAGCATTCAAATTGTGACGAAATGGACTGTTA-GACCAAATTACCCAGCCAAACT
1 ACATTTCTATAAG-ATTCAAATTGGGACGAAATGGACTGTCATG-CCAAACTACCCAGCCAAACT
* * * * *
24255006 GCCCTTCCAAAATTTTATTAAATACAAAATTAATAGG
64 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* *
24255043 ACATTTCTATAAGAGTTCAAATTGGGACGAAATGGACTGTCATGCCTAACTACCCAGCCAAATTG
1 ACATTTCTATAAGA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* ** * * *
24255108 CTC-GGGAAGAATTTAATTGAATACAAAATTTAGAGG
65 CCCTGCCAA-AATTTGATTGAATGCAAAATTAAGAGG
* * * *
24255144 AAATTTATATAAAAATTCAAATTGGGACGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTG
1 ACATTTCTAT-AAGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
24255209 TCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGG
65 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * * *
24255244 ACATTTTTATAAGAATTCAAATTAGGACGAAATGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTCTATAAG-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
*
24255309 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGG
65 CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
*
24255345 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAA
1 ACATTTCTATAAG-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA
24255407 ATTAATTGAA
Statistics
Matches: 396, Mismatches: 59, Indels: 19
0.84 0.12 0.04
Matches are distributed among these distances:
99 5 0.01
100 148 0.37
101 236 0.60
102 7 0.02
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (100 bp):
ACATTTCTATAAGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGC
CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGG
Found at i:24255265 original size:201 final size:201
Alignment explanation
Indices: 24254842--24255706 Score: 987
Period size: 201 Copynumber: 4.4 Consensus size: 201
24254832 GTGACCATCA
* * * * *
24254842 ACATTTTTATAA-ACATTCAAATTGGCACGAAATAGACTGTAATGTCAAACTACCCAACCAAACT
1 ACATTTTTATAAGA-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
* ** * *
24254906 GTCTTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGTGACG
65 GCCCCGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* * * * * * *
24254971 AAATGGACTGTTA-GACCAAATTACCCAGCCAAACTGCCCTTCCAAAATTTTATTAAATACAAAA
130 AAATGGACTGTCATG-CCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGATTGAATGCAAAA
*
24255035 TTAATAGG
194 TTAAGAGG
* * * *
24255043 ACATTTCTATAAGAGTTCAAATTGGGACGAAATGGACTGTCATGCCTAACTACCCAGCCAAATTG
1 ACATTTTTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* ** * * * * * **
24255108 -CTCGGGAAGAATTTAATTGAATACAAAATTTAGAGGAAATTTATATAAAAATTCAAATTGGGAC
66 CCCCGCCAA-AA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC
*
24255172 GAAATGGATTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAA-TTGATTGAATGCAAAA
129 GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGATTGAATGCAAAA
24255236 TTAAGAGG
194 TTAAGAGG
* * * *
24255244 ACATTTTTATAAGAATTCAAATTAGGACGAAATGAACTCTCATACCAAACTACCCAGCCAAACTG
1 ACATTTTTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
* *
24255309 CCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
66 CCCCGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACG
* *
24255374 AAATGGACTGTCATGCCAAACT----A--C---C--T--AGCCAAAA-TTAATTGAATGCAAAAT
130 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGATTGAATGCAAAAT
24255425 TAAGAGG
195 TAAGAGG
* * * * * * * *
24255432 ACATTTTTATAAGCATTCAAATTGTGTCGAAATGAACTGTTATGCAAAACTACCCTGCCAAATTG
1 ACATTTTTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
** * *
24255497 CCCCGCCAAAATTGATTGAACCCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACGA
66 CCCCGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
* *
24255562 AATGGACTGTCATGCCAAACTACCCAGCCAAA-TTTCCCTGCAAAAATTTGATTGAATGCAAAAT
131 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGT-CCTGCCAAAATTTGATTGAATGCAAAAT
24255626 TAAGAGG
195 TAAGAGG
** * *
24255633 ACATTTCGATAA-ACATTCAAATTGGGAGGAAATGGACTGTCATGCCAAACTACCTAGCCAAACT
1 ACATTTTTATAAGA-ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT
*
24255697 GCCCTGCCAA
65 GCCCCGCCAA
24255707 TGTCATAACA
Statistics
Matches: 560, Mismatches: 83, Indels: 42
0.82 0.12 0.06
Matches are distributed among these distances:
187 70 0.12
188 95 0.17
190 1 0.00
191 1 0.00
192 1 0.00
193 1 0.00
195 1 0.00
197 2 0.00
200 11 0.02
201 286 0.51
202 90 0.16
203 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (201 bp):
ACATTTTTATAAGAATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTG
CCCCGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGA
AATGGACTGTCATGCCAAACTACCCAGCCAAACTGTCCTGCCAAAATTTGATTGAATGCAAAATT
AAGAGG
Found at i:24255447 original size:87 final size:87
Alignment explanation
Indices: 24255300--24255585 Score: 297
Period size: 87 Copynumber: 3.1 Consensus size: 87
24255290 AAACTACCCA
* *
24255300 GCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACT-ACCTGCCAAAATTTAATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
24255365 ATTGGGACGAAATGGACTGTCAT
65 ATTGGGACGAAATGAACTGTCAT
*
24255388 GCCAAACTACCTAGCCAAAA-TTAATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAA
1 GCCAAACTACCT-GCCAAAATTTAATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24255452 ATTGTGTCGAAATGAACTGTTAT
65 ATTGGGACGAAATGAACTGTCAT
* * * *
24255475 GCAAAACTACCCTGCC-AAATTGCCCCGCCAAAATTGATTGAACCCAAAATTAATAGGACATTTC
1 GCCAAACTA-CCTGCCAAAATT---------TAATTGAATG----CAAAATTAAGAGGACATTTC
* *
24255539 TATAAGCATTCAAATTGGTACGAAATGGACTGTCAT
52 TATAAGCATTCAAATTGGGACGAAATGAACTGTCAT
24255575 GCCAAACTACC
1 GCCAAACTACC
24255586 CAGCCAAATT
Statistics
Matches: 164, Mismatches: 18, Indels: 21
0.81 0.09 0.10
Matches are distributed among these distances:
86 3 0.02
87 76 0.46
88 18 0.11
96 8 0.05
99 2 0.01
100 57 0.35
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.27
Consensus pattern (87 bp):
GCCAAACTACCTGCCAAAATTTAATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGAACTGTCAT
Found at i:24255563 original size:100 final size:100
Alignment explanation
Indices: 24255401--24255706 Score: 418
Period size: 100 Copynumber: 3.0 Consensus size: 100
24255391 AAACTACCTA
* *
24255401 GCCAAAATTAATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGTGT-CGAAAT
1 GCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GTACGAAAT
* * * *
24255465 GAACTGTTATGCAAAACTACCCTGCCAAATTGCCCC
65 GGACTGTCATGCCAAACTACCCTGCCAAATTGCCCT
** *
24255501 GCCAAAATTGATTGAACCCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACGAAATG
1 GCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATG
* *
24255566 GACTGTCATGCCAAACTACCCAGCCAAATTTCCCT
66 GACTGTCATGCCAAACTACCCTGCCAAATTGCCCT
* * * * *
24255601 GCAAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCGATAAACATTCAAATTGGGAGGAAAT
1 GCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
*
24255666 GGACTGTCATGCCAAACTA-CCTAGCCAAACTGCCCT
65 GGACTGTCATGCCAAACTACCCT-GCCAAATTGCCCT
24255702 GCCAA
1 GCCAA
24255707 TGTCATAACA
Statistics
Matches: 180, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
99 2 0.01
100 94 0.52
101 84 0.47
ACGTcount: A:0.38, C:0.21, G:0.16, T:0.25
Consensus pattern (100 bp):
GCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTACGAAATG
GACTGTCATGCCAAACTACCCTGCCAAATTGCCCT
Found at i:24255636 original size:288 final size:287
Alignment explanation
Indices: 24254842--24255694 Score: 1088
Period size: 288 Copynumber: 2.9 Consensus size: 287
24254832 GTGACCATCA
*
24254842 ACATTTTTATAAACATTCAAATTGGCACGAAAT-AGACTGTAATGTCAAACTACCCAACCAAACT
1 ACATTTTTATAAACATTCAAATTGG-ACGAAATGA-ACTGTAATG-CAAACTACCCAGCCAAACT
*
24254906 GTCTTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATT-GTGAC
63 GTCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGT-AC
* * * * *
24254970 GAAATGGACTGTTA-GACCAAATTACCCAGCCAAACTGCCCTTCCAAAATTTTATTAAATACAAA
127 GAAATGGACTGTCATG-CCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAA
* *
24255034 ATTAATAGGACATTTCTATAAG-AGTTCAAATTGGGACGAAATGGACTGTCATGCCTAACTACCC
191 ATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCC-AA--A-CT
* *
24255098 AGCCAAATTGCTCGGGAAGAATTTAATTGAATACAAAATTTAGAGG
251 A-CC---TAGC-C---AA-AATTTAATTGAATACAAAATTAAGAGG
* * * * * *
24255144 AAATTTATATAAAAATTCAAATTGGGACGAAATGGATTGTCATGCCAAACTACCCAGCCAAACTG
1 ACATTTTTATAAACATTCAAATT-GGACGAAATGAACTGTAATG-CAAACTACCCAGCCAAACTG
*
24255209 TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGAATTCAAATTAGG-ACG
64 TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATT-GGTACG
* * *
24255273 AAATGAACTCTCATACCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAAT
128 AAATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAAT
24255338 TAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGC
193 TAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGC
*
24255403 CAAAA-TTAATTGAATGCAAAATTAAGAGG
258 CAAAATTTAATTGAATACAAAATTAAGAGG
* * * * *
24255432 ACATTTTTATAAGCATTCAAATTGTGTCGAAATGAACTGTTATGCAAAACTACCCTGCCAAATTG
1 ACATTTTTATAAACATTCAAATTG-GACGAAATGAACTGTAATGC-AAACTACCCAGCCAAACTG
* * ** * *
24255497 CCCCGCCAAAATTGATTGAACCCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGTACGA
64 TCCTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGTACGA
* * * *
24255562 AATGGACTGTCATGCCAAACTACCCAGCCAAATTTCCCTGCAAAAATTTGATTGAATGCAAAATT
129 AATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAATT
* * *
24255627 AAGAGGACATTTCGATAAACATTCAAATTGGGAGGAAATGGACTGTCATGCCAAACTACCTAGCC
194 AAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCC
24255692 AAA
259 AAA
24255695 CTGCCCTGCC
Statistics
Matches: 492, Mismatches: 50, Indels: 32
0.86 0.09 0.06
Matches are distributed among these distances:
287 4 0.01
288 251 0.51
289 2 0.00
290 2 0.00
293 1 0.00
294 3 0.01
297 2 0.00
298 2 0.00
299 1 0.00
301 2 0.00
302 218 0.44
303 3 0.01
304 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.26
Consensus pattern (287 bp):
ACATTTTTATAAACATTCAAATTGGACGAAATGAACTGTAATGCAAACTACCCAGCCAAACTGTC
CTGCCAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTGGTACGAAA
TGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGCCAAAATTTTATTGAATGCAAAATTAA
GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAA
AATTTAATTGAATACAAAATTAAGAGG
Found at i:24258579 original size:101 final size:101
Alignment explanation
Indices: 24258404--24258767 Score: 336
Period size: 101 Copynumber: 3.8 Consensus size: 101
24258394 GTGTCTACAA
* * *
24258404 CCAATATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGAAGAAATG
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
24258469 GACTATCATGCCAAACTAACCAGCCAAATTTCCCTG
66 GACTATCATGCCAAACTAACCAGCCAAATTTCCCTG
* * * *
24258505 CCAATGTTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATT-ATACTTGGGATGAAAT
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCA-AATTGGGAAGAAAT
*
24258569 GGACTGTCATGCCAAACT-----G--------CCCTG
65 GGACTATCATGCCAAACTAACCAGCCAAATTTCCCTG
* * * *
24258593 CCAA-AATTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCAAATTGGGACA-AAA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATT-TCTATAAACATTCAAATTGGGA-AGAAA
* * * *
24258655 TGGA-TGTCATGCAAAACT-ACCTAGCCAAACTACCCTG
64 TGGACTATCATGCCAAACTAACC-AGCCAAATTTCCCTG
* ** * * * * *
24258692 CCAA-AATTGATTGAACACAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGACGAAATA
1 CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
24258756 GACTATCATGCC
66 GACTATCATGCC
24258768 TGTAACACCC
Statistics
Matches: 220, Mismatches: 23, Indels: 41
0.77 0.08 0.14
Matches are distributed among these distances:
86 13 0.06
87 49 0.22
88 11 0.05
91 1 0.00
96 1 0.00
98 1 0.00
99 64 0.29
100 8 0.04
101 72 0.33
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
CCAATATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGGAAGAAATG
GACTATCATGCCAAACTAACCAGCCAAATTTCCCTG
Found at i:24258648 original size:87 final size:86
Alignment explanation
Indices: 24258512--24258672 Score: 209
Period size: 87 Copynumber: 1.9 Consensus size: 86
24258502 CTGCCAATGT
* * * **
24258512 TTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAACATTATACTTGGGATGAAATGGACTGTC
1 TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGA-TGTC
*
24258577 ATGCCAAACTGCCCTGCCAAAA
65 ATGCAAAACTGCCCTGCCAAAA
* *
24258599 TTGATTGAACGCAAAATTAAGAGGACATTAT-TATAAGCATTCA-AATTGGGACAAAATGGATGT
1 TTGATTGAACGCAAAATTAAGAAGACATT-TCTATAAACATT-ATAATTGGGACAAAATGGATGT
24258662 CATGCAAAACT
64 CATGCAAAACT
24258673 ACCTAGCCAA
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
86 13 0.20
87 49 0.77
88 2 0.03
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (86 bp):
TTGATTGAACGCAAAATTAAGAAGACATTTCTATAAACATTATAATTGGGACAAAATGGATGTCA
TGCAAAACTGCCCTGCCAAAA
Found at i:24262894 original size:101 final size:101
Alignment explanation
Indices: 24262709--24266850 Score: 2302
Period size: 101 Copynumber: 41.1 Consensus size: 101
24262699 ATTACAATGT
* * * *
24262709 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGATGATATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
24262774 TAAG-AGTTCAAATAT-GGACGAAATAGG-CTGTCATGC
66 TAAGCA-TTCAAAT-TGGGACGAAAT-GGACTGTCATGC
* * *
24262810 CAAACTACCCAGCTAAACTTCCCTGCCAAAATTTGATTGAATTCAAAATTAAGAGGACATTTCAA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24262875 TACA-CATTAAAATTGGGACGAAAT--A--GACATGC
66 TA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
24262907 CAAACTACCCAGCTAAA-TATCGCTGCCTAAATTTGATTCAATGCAAAATTAAGAGGACATTTCG
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
24262971 ATACA-CATTCAAATTGGGATGAAAAGGACTGTCATGC
65 ATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24263008 CAAACTACCCAGCTAAATTTCCCTACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
*
24263073 TACA-CATTCAAATTGGGACGAAAT--A--GACATGC
66 TA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24263105 CAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAAGAGGACATTTCG
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
24263169 ATGCA-CATTCAAATTGGGATGAAATGGACTGTCATGC
65 AT-AAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24263206 CAAACTGCCCAGCCAAACTTCCCTGCCAAAA-TTGATTGAATGTAAAATTAAAAGGAAATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24263270 TAAGCATCCAAATTGGGTCGAAATGGACTGTCAAGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* ** **
24263306 CAAATTACCCAGCCAAACAGCCCTGCCAATTTTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24263371 TAAGCATTCAAATTGAGACAAAATGGACTATCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * *
24263407 AAAACCATCCAACCAAACTGT-CCTGCCAAAATTTGATTGAATGCAAAATTAAGAGTACTTTTCA
1 CAAACTACCCAGCCAAACT-TCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
24263471 ATAAACATTCAAATTGGTACGAAATGAACTGTCATGT
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
24263508 CAAACT-CCCAGCCAAA-TTGCCATG-CAAAAATTGATTGAATGCAAAATTAAGAGAATATTTTT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * *
24263570 CTAAGCATTAAAATTGGGACGAAATGGAATGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
24263607 CAAACTACCTAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAGAATTAAGAAGAAATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24263672 TAAGCATTCAAATTGGGACAAAATGGACAGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *
24263708 CAAACTACACTATG--AAACTGCCCTG-CAAAACTTTGATTGAATGCAATATTAAGAGGACATTT
1 CAAACTAC-CCA-GCCAAACTTCCCTGCCAAAA-TTTGATTGAATGCAAAATTAAGAGGACATTT
** * * * * *
24263770 AAATAGGCACTCCAATTGGGACGAAATAGATTGTCATGC
63 CTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24263809 CAAACTACCCAACCAAACTGCCCTTCCCAAATTTGATTGAATGCAACAA-TAAGAGGACATTTCT
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAA-AATTAAGAGGACATTTCT
* * * *
24263873 ATAAGCACTCAAATTGGGATGAAATAGACGGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24263910 CAAACTACCCAGCCAAA-TTGCCATGCTAAAA-TTGATTGAATGCAAAATTAATAGGATATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
24263973 ATAAGCATTCAAATTGGGACAAAATGGACTGTTATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * *
24264010 AAAACTACCCAGCCAAACTACCTTGGC---A-TTGATTGAATGCCAAATTCAGAGGACAATTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24264071 AAAGCATTCAAATTGGGACGAAATGGATTGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *** * * *
24264107 CAAACTA-TCTGACCAAA-TTACGTAGCC-AAA-TTG--CCCA-GCCCAAATT-TGATTGA-A-T
1 CAAACTACCCAG-CCAAACTTCCCT-GCCAAAATTTGATTGAATG-CAAAATTAAGA-GGACATT
* * * **
24264162 GC-A-AA--ACT-AAGA--GGAATCGAAATGGACAATCATGC
62 TCTATAAGCATTCAA-ATTGGGA-CGAAATGGACTGTCATGC
* * * *
24264197 AAAAATACCCAGCCAAATTTCCCTACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24264262 TAAGTAGTCAAATTGAGACGAAATGGACTGTCAAGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * ** * * * *
24264298 CAAACTTCCAAGCCAAACGGCCCTGCCAATATTTGATTGAATGAAAAATTAAGAAGTCATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24264363 TAAGCATTGAAATTTGGACGAAATGGACGGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* ** * * * * * *
24264399 CAAACTACCCAGCCAAACTACCCTGCCTTAATTTGAGTAAATGAAAAATTAATATGACATTTCTG
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24264464 TAAG-AGTTCAAATAT-GGATGAAATGGACAGTCATGC
66 TAAGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGC
* * * *
24264500 CAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * ** *
24264565 TAAACTTTCAAATTTTGACGAAATGCACTGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * ** *
24264601 CAAACTACCCAACCAACCTTCTCTGCTGAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24264665 TAAGCATTCAAATTGGGACGAAATGAACTGCCACGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * * * *
24264701 CAAACTACCTAGGCAAACTGCTC-GACCAATATTTTATTGAATGAAAAATTATGAGGACATTT-T
1 CAAACTACCCAGCCAAACTTCCCTG-CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
24264764 AATAAACATTCATATTAGGACGAAATGAACTGTCATGC
65 -ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * ** * * *
24264802 CAAACTATCAAGCCAAACTACCCTGGGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24264867 TAAGCATTCAAATTGGGACAAAATGAACTG---TGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *
24264900 CAAACT----A--C---C-T---TGTCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24264952 TAAACATTCAAATTGGTACGAAATGGACTGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* ** * * * *
24264988 CAAACTACCTAGCCAAACTAACATGCCATAA-TTGATTGAATGCAAAATTACGAGAACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
24265052 TAAGCATT-AAATTTGGGACGAAATGGACTGTCATGC
66 TAAGCATTCAAA-TTGGGACGAAATGGACTGTCATGC
* * * *** * * * * *
24265088 CAAACTGCCCTA-CAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCCATAAGCGTTTAAAT
1 CAAACTACCC-AGCCAAACTTCCCTG---CCAAAATT----TG--A-TT-GA-ATGC---AAAAT
* * * ** * * **** * * * *
24265152 TAGGATGAAATAAACTATCATACCA--CACTACCCTG-CCAAACTTGATTG-AATGC
50 TAAGAGGACAT-TTCTAT-A-AGCATTCA-AATTGGGACGAAA-TGGACTGTCATGC
* * ** * ** * * * *
24265205 TAAATTA---AGAGAACATTTCTATAAG-CATTCAAATTGCGA-CGAAATAG-ACAA-TCA-A-G
1 CAAACTACCCAGCCAA-ACTTCCCT--GCCA---AAATT-TGATTG-AAT-GCAAAATTAAGAGG
* ** ** * ** * * *
24265261 CCA-AAC--TACCCAGTCAAACTGTCCTG-CGAATATTTGATTG-AATGC
57 ACATTTCTATAAGCATTCAAA-T-T-GGGACGAA-A-TGGACTGTCATGC
** * * * ** * * * *
24265306 ACAATTAAGAGGCCATTTCTATAAACATTCAAATTAAGACGAAA-TGGACGTT-CATGCCAAAA-
1 -CAA--ACTA-CCCA--GC--CAAAC-TTC--CCT--GCCAAAATTTGA--TTGAATG-CAAAAT
* * * ** * * * * *** * * *
24265368 TAACAAGCCA-AACTAT---CTTGTCAATATT-TGATTG-AATGCAAAATTAAGAG
50 TAAGAGGACATTTCTATAAGCAT-TCAA-ATTGGGA-CGAAATGGACTGTCATG-C
* * * * ** * * ** * * **
24265418 GACATTTCTTAAAGCGTTCAAA-TT---TGGACAAAA-TGGACTTTTATGCCAAATTACCCTGCC
1 CAAACTAC--CCAGC---CAAACTTCCCT-GCCAAAATTTGA-TTGAATGCAAAATTA---AGAG
* * * * * * ** ** * *
24265478 AAAATTT-GAT-TGAATGTAAAATTAAGAGGAC-ATTTCTA-TAGACAT-T
56 GACATTTCTATAAGCAT-TCAAATT--G-GGACGAAATGGACT-GTCATGC
* ** * * *
24265524 CAAATTGGTACGAAGTTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTT-AT
1 CAAA---CTACCCA---G-CCA-AA---C----TTCCCTGCC-AA------------AATTTGAT
* * * * * * *
24265588 TGAATGCAAAATTAAGAAGACATTTTTATAAGTAATAAAATTAGGACGAAATTGACTGTCATGC
38 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24265652 CAAACTACCCAGCCAAACTTCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * *
24265717 TAATCGTTTAAATTGGGACTAAATGGACTGTCATGA
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
** * * * * * * * *
24265753 CAAACTGTCTAACCAAACTTTCCTACCAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24265818 TAAACATTCAAATTAGGACGAAATTGACTGTCATGG
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * ** *
24265854 CAAACTACCCAACCAAACTACGGTGCCAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24265918 TAAGAATTCAAATTGGGACGAAATGGACGGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24265954 CAAACTACCCAGCCAAAATACCATGCCAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24266018 TAAGAATTCAAATTGGGACAAAATGGACGGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * *
24266054 CAAACTACCCAACCAAACTGCCATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24266118 TAAGCATTCAAATTGGTACGAAATTGACTGTCATAC
66 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * * * *
24266154 TAAACTGCCCAGCCAAA-TTGCCCTACCAAAA-TTGATT-AATGCAAATTTTAGAGGGCATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * *
24266216 ATAAGCATTTAAATAGGGACAAAATGGA---T--TG-
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * *** * *
24266247 ---AC-A--C-GCCTAACTACTGAGCCAAAATTTGATTGCATGCATAATTAAGAGGACATTTCTA
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24266305 TAA-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGC
66 TAAGCA-TTCAAATTGGGACGAA-ATGGACTGTCATGC
* * * * * * * *
24266341 AAAAATACCCAACCAAATTTCCTTGCCAAAATTTG-TTTAATTGC-AAATTAAAAATGACATTTC
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAA-TGCAAAATT-AAGAGGACATTTC
* * *
24266404 GATACA-CAATCAAATTGGGATGAAATGGACTGTCATGC
64 TATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24266442 AAAACAACCCAGCCAAACTTCCCTGCCAAAA-TTGATTGAATGCAAAACTAAGAGGACATTTCTG
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24266506 TAAACATTCAAATTGGTACGAAAT-TAATAGTCATGC
66 TAAGCATTCAAATTGGGACGAAATGGACT-GTCATGC
* * * *
24266542 CAAACAACCCAACCAAA-TTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * **
24266606 ATAGGTATTCAAATTAGGACGAAATAAACTGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24266643 CAAACAACCCAACCAAA-TTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCT
1 CAAACTACCCAGCCAAACTT-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * **
24266707 ATAGGTATTCAAATTAGGACGAAATAAACTGTCATGC
65 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* ** * * * * *
24266744 CAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGTA-GTCATTTCT
1 CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCT
24266808 ATAAGCATT-ATAATTGGGACGAAATGGACTGTCATGC
65 ATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGC
24266845 CAAACT
1 CAAACT
24266851 GTTCTACCAA
Statistics
Matches: 3151, Mismatches: 647, Indels: 486
0.74 0.15 0.11
Matches are distributed among these distances:
85 63 0.02
86 12 0.00
87 9 0.00
88 49 0.02
89 5 0.00
90 31 0.01
91 13 0.00
92 5 0.00
93 4 0.00
94 13 0.00
95 6 0.00
96 17 0.01
97 260 0.08
98 16 0.01
99 134 0.04
100 719 0.23
101 1527 0.48
102 27 0.01
103 6 0.00
104 7 0.00
105 5 0.00
106 7 0.00
107 4 0.00
108 8 0.00
109 13 0.00
110 8 0.00
111 14 0.00
112 17 0.01
113 17 0.01
114 18 0.01
115 7 0.00
116 17 0.01
117 19 0.01
118 8 0.00
119 6 0.00
120 4 0.00
121 2 0.00
122 1 0.00
125 4 0.00
126 4 0.00
127 7 0.00
128 11 0.00
129 9 0.00
130 2 0.00
131 12 0.00
132 3 0.00
133 1 0.00
ACGTcount: A:0.39, C:0.19, G:0.16, T:0.26
Consensus pattern (101 bp):
CAAACTACCCAGCCAAACTTCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
TAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
Found at i:24263815 original size:202 final size:200
Alignment explanation
Indices: 24262709--24274714 Score: 5254
Period size: 201 Copynumber: 60.6 Consensus size: 200
24262699 ATTACAATGT
* * *
24262709 CAAACTACCAAGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGATGATATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24262774 TAAG-AGTTCAAATAT-GGACGAAATAGG-CTGTCATGCCAAACTACCCAGCTAAACTTCCCTGC
64 TAAGCA-TTCAAAT-TGGGACGAAAT-GGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGC
* * * *
24262836 CAAAATTTGATTGAATTCAAAATTAAGAGGACATTTCAATACA-CATTAAAATTGGGACGAAAT-
126 CAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATA-AGCATTCAAATTGGGACGAAATG
*
24262899 -A--GACATGC
190 GACTGTCATGC
* * * * *
24262907 CAAACTACCCAGCTAAA-TATCGCTGCCTAAATTTGATTCAATGCAAAATTAAGAGGACATTTCG
1 CAAACTACCCAG--AAACT-GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * *
24262971 ATACA-CATTCAAATTGGGATGAAAAGGACTGTCATGCCAAACTACCCAGCTAAATTTCCCTACC
63 ATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* *
24263035 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCAATACA-CATTCAAATTGGGACGAAAT--
127 AAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATA-AGCATTCAAATTGGGACGAAATGG
*
24263097 A--GACATGC
191 ACTGTCATGC
* * * *
24263105 CAAACTACCCAGCTAAA-TATCGCTGCCAAAATTTGATTCAATGCAAAATTAAGAGGACATTTCG
1 CAAACTACCCAG--AAACT-GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * *
24263169 ATGCA-CATTCAAATTGGGATGAAATGGACTGTCATGCCAAACTGCCCAGCCAAACTTCCCTGCC
63 AT-AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * *
24263233 AAAA-TTGATTGAATGTAAAATTAA-AAGGAAATTTCTATAAGCATCCAAATTGGGTCGAAATGG
127 AAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGG
*
24263296 ACTGTCAAGC
191 ACTGTCATGC
* * **
24263306 CAAATTACCCAGCCAAACAGCCCTGCCAATTTTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * **
24263371 TAAGCATTCAAATTGAGACAAAATGGACTATCATGCAAAACCATCCAACCAAACTGTCCTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * *
24263436 AATTTGATTGAATGCAAAATTAAG-AGTACTTTTCAATAAACATTCAAATTGGTACGAAATGAAC
129 AATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24263500 TGTCATGT
193 TGTCATGC
* * * * * * *
24263508 CAAACT-CCCAGCCAAATTGCCATG-CAAAAATTGATTGAATGCAAAATTAAGAGAATATTTTTC
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24263571 TAAGCATTAAAATTGGGACGAAATGGAATGTCATGCCAAACTACCTAGCCAAACTACCCTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * *
24263636 AATTTGATTGAATGCAGAATTAAGAAGAAATTTCTATAAGCATTCAAATTGGGACAAAATGGACA
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24263701 GTCATGC
194 GTCATGC
* * **
24263708 CAAACTACACTATGAAACTGCCCTG-CAAAACTTTGATTGAATGCAATATTAAGAGGACATTTAA
1 CAAACTAC-CCA-GAAACTGCCCTGCCAAAA-TTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * * * *
24263772 ATAGGCACTCCAATTGGGACGAAATAGATTGTCATGCCAAACTACCCAACCAAACTGCCCTTCCC
63 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * *
24263837 AAATTTGATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCACTCAAATTGGGATGAAATAGA
128 AAATTTGATTGAATGCAA-AATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
*
24263901 CGGTCATGC
192 CTGTCATGC
* * * * *
24263910 CAAACTACCCAGCCAAATTGCCATGCTAAAA-TTGATTGAATGCAAAATTAATAGGATATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * *
24263974 TAAGCATTCAAATTGGGACAAAATGGACTGTTATGCAAAACTACCCAGCCAAACTACCTTGGC--
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
24264037 -A-TTGATTGAATGCCAAATTCAGAGGACAATTCTAAAAGCATTCAAATTGGGACGAAATGGATT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24264100 GTCATGC
194 GTCATGC
* *
24264107 CAAACTATCTGACCA-AATTACGTAGCCAAATTGCCCAGCCCAAATTTGATTGAATGCAAAACTA
1 CAAACTA-C---CCAGAA--AC-T-GCC---CTG-CCA----AAATTTGATTGAATGCAAAATTA
* * * * * * *
24264171 AGAGGA-A--TCGA-AATGGA--C-AATCAT-GCA-AAAAT--AC--CCA-GCCAAATTTCCCTA
50 AGAGGACATTTCTATAA-GCATTCAAAT--TGGGACGAAATGGACTGTCATGCCAAACTACCC-A
* * *
24264222 -CC-AA--A----------ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTAGTCAA
111 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAA
* *
24264273 ATTGAGACGAAATGGACTGTCAAGC
176 ATTGGGACGAAATGGACTGTCATGC
* * * * * * *
24264298 CAAACTTCCAAGCCAAACGGCCCTGCCAATATTTGATTGAATGAAAAATTAAGAAGTCATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * **
24264363 TAAGCATTGAAATTTGGACGAAATGGACGGTCATGCCAAACTACCCAGCCAAACTACCCTGCCTT
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * * *
24264428 AATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGATGAAATGGA
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAATGGA
*
24264491 CAGTCATGC
192 CTGTCATGC
* * * * *
24264500 CAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * ** * * * * * **
24264565 TAAACTTTCAAATTTTGACGAAATGCACTGTCATGCCAAACTACCCAACCAACCTTCTCTGCTGA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
*
24264630 AA-TTGATTGAATGCAAAATTAAG-AGAACATTTCTATAAGCATTCAAATTGGGACGAAATGAAC
129 AATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* *
24264693 TGCCACGC
193 TGTCATGC
* * * * * *
24264701 CAAACTACCTAGGCAAACTGCTC-GACCAATATTTTATTGAATGAAAAATTATGAGGACATTT-T
1 CAAACTACCCA-G-AAACTGCCCTG-CCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* * * * * * **
24264764 AATAAACATTCATATTAGGACGAAATGAACTGTCATGCCAAACTATCAAGCCAAACTACCCTGGG
63 -ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * * * *
24264829 AATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGAA
127 AAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
24264894 CTG---TGC
192 CTGTCATGC
* * *
24264900 CAAACTA--C-----CT----TGTCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * *
24264954 AACATTCAAATTGGTACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTAACATGCCATAA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
*
24265019 -TTGATTGAATGCAAAATTACG-AGAACATTTCTATAAGCATT-AAATTTGGGACGAAATGGACT
131 TTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAA-TTGGGACGAAATGGACT
24265081 GTCATG-
194 GTCATGC
* * *
24265087 --------CC--AAACTGCCCT-ACAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCCATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * **
24265141 AGCGTTTAAATTAGGATGAAATAAAC--T-AT--C--A-TA-CCA--C--ACTACCCTGCC-AAA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
* * * * **
24265192 CTTGATTGAATGCTAAATTAAG-AGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAA
131 TTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
*
24265256 TCAAGC
195 TCATGC
* * * * *
24265262 CAAACTACCCAGTCAAACTGTCCTGCGAATATTTGATTGAATGCACAATTAAGAGGCCATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* ** * * * * * *
24265327 TAAACATTCAAATTAAGACGAAATGGAC-GTTCATGCCAAAATAACAAGCCAAACTATCTTGTCA
64 TAAGCATTCAAATTGGGACGAAATGGACTG-TCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * *
24265391 ATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACAAAATGGA
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTAT-AAGCATTCAAATTGGGACGAAATGGA
* *
24265455 CTTTTATGC
192 CTGTCATGC
* *
24265464 CAAA-T----------TACCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTAT-
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * * * *
24265517 AGACATTCAAATTGGTACGAAGTTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAA
66 AG-CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * * * *
24265582 ATTT-ATTGAATGCAAAATTAAGAAGACATTTTTATAAGTAATAAAATTAGGACGAAATTGACTG
130 ATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTG
24265646 TCATGC
195 TCATGC
* * * * *
24265652 CAAACTACCCAGCCAAACTTCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * ** * * ** *
24265717 TAATCGTTTAAATTGGGACTAAATGGACTGTCATGACAAACTGTCTAACCAAACTTTCCTACCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * * * *
24265782 AATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTAGGACGAAATTGACT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
24265847 GTCATGG
194 GTCATGC
* * ** *
24265854 CAAACTACCCAACCAAACTACGGTGCCAAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTA
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24265918 TAAGAATTCAAATTGGGACGAAATGGACGGTCATGCCAAACTACCCAGCCAAAATACCATGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* *
24265983 AA-TTGATTGAATGCAAAATTAAG-AGAACATTTCTATAAGAATTCAAATTGGGACAAAATGGAC
129 AATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24266046 GGTCATGC
193 TGTCATGC
* * * *
24266054 CAAACTACCCAACCAAACTGCCATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * *
24266118 TAAGCATTCAAATTGGTACGAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * * * *
24266183 AA-TTGATT-AATGCAAATTTTAGAGGGCATTTCTATAAGCATTTAAATAGGGACAAAATGGATT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* *
24266246 GACACGC
194 GTCATGC
* * * *
24266253 CTAACT--------ACTG---AGCCAAAATTTGATTGCATGCATAATTAAGAGGACATTTCTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * * * *
24266307 A-TAGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCAACCAAATTTCCTTGCCAA
66 AGCA-TTCAAATTGGGACGAA-ATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * *
24266370 AATTTG-TTTAATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGAAATGG
129 AATTTGATTGAA-TGCAAAATTAAGAA-GACATTTCTATA-AGCATTCAAATTGGGACGAAATGG
24266432 ACTGTCATGC
191 ACTGTCATGC
* * * * *
24266442 AAAACAACCCAGCCAAACTTCCCTGCCAAAA-TTGATTGAATGCAAAACTAAGAGGACATTTCTG
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * *
24266506 TAAACATTCAAATTGGTACGAAAT-TAATAGTCATGCCAAACAACCCAACCAAATTGCCCTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACT-GTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * * * **
24266570 ATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACGAAATAAAC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
24266635 TGTCATGC
193 TGTCATGC
* * * * *
24266643 CAAACAACCCAACCAAATTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * ** * *
24266708 TAGGTATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCAGCCAAAC-AGCCCTTCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
* * * * *
24266772 ATATTTGCTTGAATGAAAAATTAAGTAGTCATTTCTATAAGCATT-ATAATTGGGACGAAATGGA
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGA
24266836 CTGTCATGC
192 CTGTCATGC
* * * * * *
24266845 CAAACT-----G----T--TCTACCAAAA-TTAAATGAACGCAAAATTAAAAGGACATTTCTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* *** * * * * ** *
24266898 AGCATTCAAATTGGTACGAAATGGAAAATCATACCAAACTACTCAGCTAAATTGTCCTGCCAATA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
* * * * * * **
24266963 TTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTAGGACGAAATAAACTGT
131 TTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
24267028 CATGC
196 CATGC
* * * * * * *
24267033 CAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGTA-GTCATTTCT
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCT
* *
24267097 AATAAGCATT-ATAATTGGGACGAAATGGACTGTCATGCC-AA--A--C-G------T--TCTAC
63 -ATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGC
* * * *
24267147 CAAAA-TTAAATGAACGCAAAATTAA-AAGGACATTTCTATAAGCATTCAAATTGGTACGAAATG
126 CAAAATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATG
*** *
24267210 GAAAATCATAC
190 GACTGTCATGC
* * * * * * *
24267221 CAAACTACTCAGCTAAATTGTCCTGCCAATATTTGATTTAATGTAAAATCAAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* *
24267286 TAGGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAAC-AGCCCTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
** ** *
24267350 ATGTTTGATTGAATGCAAAATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAATGGA
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGA
*
24267414 TTGTCATGC
192 CTGTCATGC
* * * *
24267423 CAAACTACCCCGCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * * *
24267488 TAAACATTCAAATTTGGACAAAATGAATTGTC--G------T-----GACAAACTTCCATGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * *
24267540 AA-TTGATTGAATGCAAAATTAA-AATGACATTTTTATAAGCACTAAAATTGGGACAAAATGGAC
129 AATTTGATTGAATGCAAAATTAAGAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* *
24267603 TATCAAGC
193 TGTCATGC
* *
24267611 CAAACTACCCAGCTAAACTGCCCTGCCAATATTTTATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24267676 TAAGCATTCAAATTGGG-CTGAAATGGAATGTCATGCCAAACTACCCAGCCAAACAACCTTGCTA
64 TAAGCATTCAAATTGGGAC-GAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * * *
24267740 GAATTTGATTGAATGCAAAATTAAGAGGATC-TTTCTATAAGCATTAAAATTGGAACAAAATGGA
128 AAATTTGATTGAATGCAAAATTAAGAAGA-CATTTCTATAAGCATTCAAATTGGGACGAAATGGA
24267804 CTGTCATGC
192 CTGTCATGC
* * * * * ** *
24267813 CAAACTATCCAGCCATACTGCCCTGCCAAAATTTCATTGAATTCAAAATTAAGAGAATTTTTTTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24267878 TAAACATTCAAATTGGGACAAAATGGACTATCATGCCAAACT-----G------T--CCTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * *
24267930 AATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAGGACGAAATGGAC-
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24267994 -T-AT--
194 GTCATGC
*** *
24267997 --AA-T--GTTG-AAC-GACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
1 CAAACTACCCAGAAACTG-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * * * * ** *
24268055 AAGTATTCAAAATTGGGTCAAAATGTACTGTAATGTCAAACTACCCAATCAAACTGCCCTGCCAA
65 AAGCATTC-AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
24268120 AATTAGATTGAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAATTGACT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
24268184 ATCATGC
194 GTCATGC
*
24268191 TAAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGATTGAATGCAAAATTAA
1 CAAACTACCCAG---AA--A-CT-GC----C---C-TGCCAAAATTTGATTGAATGCAAAATTAA
* * * * * * * **
24268256 GAGGACATTTCTATAAACATTAAAAATGGGACGAAATGTACAGTCACAG-GAAACTACATAGCCA
51 GAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA-TGCCAAACTACCCAGCCA
* * * * * * *
24268320 AA-TAGCCATACCAAAA-TTGGTGGAATTCAAAATT---AAGACATTTCTATATGTATTCAAATT
115 AACTA-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATT
*
24268380 GGGACGAAATGCACATG-CATG-
179 GGGACGAAATGGAC-TGTCATGC
* *
24268401 -----T----A-AAACTGCCCTGCCAAAATTTGATTGAAAGCAAAATTAAGTA-GACATTTTTAT
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTAT
* * ** *
24268455 AAGGATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAG-CAAATTTGTCCTACCAA
65 AAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAA-CTACCCTGCCAA
* * *
24268519 AATTTGATT-AGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTAC
129 AATTTGATTGA-ATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24268583 TATCATGC
193 TGTCATGC
* * *
24268591 CAAACTGCCCTATCGGGAGAAAATGGACAGTCATGCCAAATTACCCAGCCAAACTGCCTTGCCAA
1 CAAACT-ACC---C---AG---A---A-A--C-TG--------CCCTGCCAAAAT---TTG----
* * *
24268656 AATTGGATTGAATGCAAAATTAATAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
34 ATT------GAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
* ** * * * * * *
24268721 GTCATCCCAAACTACCTGGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAA-TAGTA
93 GTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAG-A
* ** *** * *** * * *
24268785 CATTTCTATAAGCATTAAAATT-TTATTTAATGCAAAATTAAGA
157 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * ** * * * * ** ** * * * * * * ** *
24268828 GAAAATTTCTATAAGAATTCAAATTTGAAAAAAAATGGACTGTCATGCCAAACTACCCA-ACCAA
1 CAAACTACCCAGAA-ACTGC---CCTG-CCAAAATTTGATTG-AATGCAAAATTA---AGAGGAC
* *** * *** * * **** **
24268892 ATTGCCT-T--GC---CAAAATT--GTTTAAATGCAAAATTAAG--AGAACATTTTTA-TAAGAA
57 ATT-TCTATAAGCATTC-AAATTGGGACGAAATGGACTGTCATGCCA-AAC-TACCCAGCCA-AA
* *** * * * * * * *** * ** * *
24268946 TTAAAATTGGGACAAAA-TGGACTGTCACGCAAAACTACCCAGCCA-AACTACCTTACCA---AA
117 CT-ACCCT--GCCAAAATTTGATTG-AATGCAAAATTAAGAAGACATTTCTA--TAAGCATTCAA
* ** * * * *
24269006 ATT-TGATTAAATGCAAAAT-TAAGATGA
176 ATTGGGACGAAATG--GACTGT--CATGC
* ** **** * * * * * ** *
24269033 CATTTA-TA-TAAGAATAC-AAATTGGGACGAAA-TGGATTGTAATGCCAAACTACCCA-ACCAA
1 CA--AACTACCCAGAA-ACTGCCCT--GCCAAAATTTGATTG-AATGCAAAATTA---AGAGGAC
* ** ** * *** * * **** ** *
24269093 ATTGC--CCAGC---CAAAATT--GATTAAATGCAAAATTAAG--AGAACATTTTTA-TAAGAAT
57 ATTTCTATAAGCATTC-AAATTGGGACGAAATGGACTGTCATGCCA-AAC-TACCCAGCCA-AAC
*** * * * * * * * *
24269148 TAAAATTGGGACAAAA-TGGACTGTCATGCAAAACTACCCAGCCAA-ACTACCTTACCAAAATTT
118 T-ACCCT--GCCAAAATTTGATTG-AATGCAAAATTA---AG--AAGAC-A--TTTCTATAA---
** * ** * * *
24269211 G-ATTGAATGCAAAATTAAGAGGAAATTTATATAGGCAT-A
168 GCA-T---T-C-AAATTGGGACGAAATGGA-CT-GTCATGC
* * * * * ** *** *** ** * *
24269250 CAAATTGGGA-CGAAATGAACTGTCATGCC--AAGCT-A-CCCA-GCAAAACTATTCTACCAAAA
1 CAAACT---ACCCAGA--AACTGCCCTGCCAAAATTTGATTGAATGCAAAA-T-TAAGAGGACAT
* ** *** * * * ** **
24269309 TT-TATTAA--ATGCAAAATTAAGA-GTAAATTTCCATAATCAT-TCAAATTA-GGAGAAAATAG
59 TTCTA-TAAGCATTC-AAATTGGGACG-AAATGGAC-T-GTCATGCCAAACTACCCAG-CCA-A-
** * *** *** * * * **
24269368 ACTGTCGTGCCAAACTATCCAACCAAACTGCCTTACCAAAATTTGATTGAATGCAAAATT-TGGA
116 ACTACCCTGCCAAA--ATTTGATTGAA-TG------CAAAA-TT-A-AGAA-G-ACATTTCTATA
* * * * ** **
24269432 GGACATTTC--TTTAAGCATTTAAATTGGGA-TGGAAT--
167 AG-CA-TTCAAATT-GGGA-CGAAA-T-GGACTGTCATGC
* ** * *
24269467 -AGACT-TTCATGCCAAACTACCCAGCAAAATTGGCCAGCAAAAATTGATTGAATGCAAAATTAA
1 CAAACTACCCA-G--AAACT-GCC--C-----T-G-C--CAAAATTTGATTGAATGCAAAATTAA
*
24269530 GAGGACATTTTTATAAGCATTCAAATTAGGG-CGAAATGGACTGTCATGCCAAACT-----G---
51 GAGGACATTTCTATAAGCATTCAAATT-GGGACGAAATGGACTGTCATGCCAAACTACCCAGCCA
* * * * *
24269586 ---T--CTTGTCAAAATTGGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTG
115 AACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTG
* *
24269646 GGACAAAATGGACTGTCATCC
180 GGACGAAATGGACTGTCATGC
* * * * * * *
24269667 CAAACTACCTAGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAAGAGTACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
** * * *** * * ** ** ** * ***
24269732 TAAGCATTCAAATT-TAATTG-AATGTAAAATTAAGAGAAAATTTCTA-TAAG-CATTCAAATTT
64 TAAGCATTCAAATTGGGA-CGAAATGGACTGTCATG-CCAAA---CTACCCAGCCAAACTACCCT
** * * * * * ** * * * ** *
24269793 GAAAAAAAAATGGACTGTCATGCAAAACTACCCAACCAAATTGCCCT--GCA--AAAATTGATTG
124 G--CCAAAATTTGATTG-AATGCAAAATTA-AGAA-GACATTTCTATAAGCATTCAAATTG---G
* * * * **
24269854 AATGCAAAATTAAGAGAATAT--TTT
181 GA--CGAAA-T--G-GACTGTCATGC
* * *** * * * * * * * * *
24269878 TATAA-GAATTA-AAATTG---GGACAAAA-TGGACTGTCACGCAAAACTACCCAGCCA-AACCA
1 CA-AACTACCCAGAAACTGCCCTGCCAAAATTTGATTG-AATGCAAAATTA---AG--AGGA-CA
* * ** * * * * * * **
24269936 CCTTACCA-AA--ATT-TGATTGAATGAAGAATTAAGAGAAAATTTCTATAAGCATTCAAATTTG
58 --TTTCTATAAGCATTCAAATTG--GGACGAA--ATG-G--ACTGTC-AT--GC---CAAACTAC
** *** ** * **** ** *
24269997 AAAAAAAATGGACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCAAAATTGAGTTGAATGC
108 CCAGCCAA---ACTACCCTGCC-AA------AATTTGATTG-AATG-CAAAATT-A--AGAA-G-
* * * * * ** ** * ** *
24270062 AAAATT-AAGAGAACAGTT-TTATAAGAATTAAAATTGGAACAAAATGGATTGTCACGC
156 ACATTTCTATA-AGCA-TTCAAATTGGGA-CGAAA-TGG-AC---------TGTCATGC
* * * * * * *
24270119 AAAACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * ** * ** *
24270184 TAATCATTCAAATTGGGA-GAAAATGGACTATTGTGCCAAACTACCCAGCAAAACTATTCTACCA
64 TAAGCATTCAAATTGGGACG-AAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* * * **
24270248 AAATTT-ATTGAATGCAAAATTAAG-AGTAAATTTCCATAATCATTCAAATTGGGAAAAAAATGG
128 AAATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGG-ACGAAATGG
*
24270311 ACTGTCGTGC
191 ACTGTCATGC
* * * * * *
24270321 CAAACTATCCAACCAAACTACCTTACCAAAATTTGATTGAATGCAAAATT-TGAAGGACATTTCT
1 CAAACTA-CCCA-GAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAG-AGGACATTTCT
* * * * * * * * **
24270385 TTAAGCATTTAAATTGGGATGGAATAGACTATCATGCCAAACTACCCAGCAAAATTGGCCTGCCA
63 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* *
24270450 AAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGG-CGAAATAGA
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATT-GGGACGAAATGGA
24270513 CTGTCATG-
192 CTGTCATGC
* *
24270521 --------CC--AAACTGCCCAGCCAAAATTTGATAGAATGCAAAATTAAGAGGACATTTCTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
*
24270576 AGCATTCAAATTGGGGCGAAATGGACTGTCATGCCAAACT-----G-C---CT----TGCCAAAA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
* * * * * * * *
24270628 TTGGATTGAATGCAAAATTAAGAGGACATTTCTATAGGCACTCCAATTGGGACAAAACGGATTGT
131 TTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
24270693 CATGC
196 CATGC
* * * *
24270698 CAAACTACCCAACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGAGGACATTTCT
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAATGCAA-AATTAAGAGGACATTTCT
* * * * * * * * *
24270762 ATAAGCATTCAAATTGGGATGAAATAGACGGTCACGCCAAACTACCCTGCCAAATTGCCATGCTA
63 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCA
* *
24270827 AAA-TTGATTGAATGCTAAATTAATAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24270891 TGTTATGC
193 TGTCATGC
* * * * * * *
24270899 AAAACTACCCAGCCAAACTACCCTGGCAAAA-TTGATTGAACGCCAAATTTAGAGGACAATTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * *
24270963 AAAGCATTCAAATTGGGATGAAATGGATTGTCATGCCAAACTATCCAGCCAAATTACCTAGCTAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCC-AA--A-CTA-C---
* * * * * ** **
24271028 ACTGCCCAAACAAAATTTGATGGAATGAAAAATTAAGATGGCATTTAAATAAATATTCAAATTGG
121 CCTG--C---CAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGG
* * *
24271093 GACAAAATAGACAGTCATGC
181 GACGAAATGGACTGTCATGC
* * * * ** * * *
24271113 AAAAATGCCCAGCAAAATTTTCTTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCGA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * ** * *
24271178 TAAACATACAAATTGGAACGAAATGGACTGTCATGTAAAACTATCTAGCCAAAC-ATCCCTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
* * * * * * *
24271242 AAA-TTGACTAAATGCAAAATTAATAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGAC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* *
24271306 TTTCATGT
193 TGTCATGC
* *
24271314 CAAACTACCC----A-------G-CAATATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTAT
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * * * * * *
24271365 AAGTAGTT-AAATTGAGACGAAATGGACTATCAAGCAAAACTTCCAAGCAAAAC-AGCCCTGCCA
65 AAGCA-TTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
* * * *
24271428 ATATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGAC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
24271493 TGTCATGC
193 TGTCATGC
* * * * * * *
24271501 CAAACTA-CC-----CTG-CCT----TAATTTGAGTAAATGAAAAATTAATATGACATTTCTGTA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * *
24271555 AG-AGTTCAAATAT-GGAAGAAATGGACAGTCATTCCAAACT-CCCAGCCAAATTTCCCAGCCAA
66 AGCA-TTCAAAT-TGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
24271617 AATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTGGAACGAAATGGACT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
*
24271682 ATCATGC
194 GTCATGC
* * * * * * ** * * *
24271689 AAAACTATCTAGCTAACCTTCTCTATCGAAA-TTGATTGAATGCAAAATTAAGAGAACGTTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24271753 TAAGCATTTAAATTGGGACTAAATGAACTGTCATG-C-AA-T----------ACTACCCTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* ** * *
24271805 AA-TTGATTGAATGCTAAATTAAG-AGAACATTT-TATAAGCATTCAAATTACGAGGAAATAGAC
129 AATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24271867 AGTCATGC
193 TGTCATGC
* * * ** *
24271875 CAAACTACCCAGCCAAATTGTCCTACCAATGTTTGATTGAATGCACAATTAAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
** * * * * *
24271940 TAAAAATTCAAATTGCGACGAAATGGACTGTCATGCCAAAATAACAAGCCAAACTACCTTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * *
24272005 TATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAAATT-GGACAAAATGGA
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTAT-AAGCATTC-AAATTGGGACGAAATGGA
24272068 CT-T--T--
192 CTGTCATGC
* * *
24272072 --TA-T-GCC--AAACTGCCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTAT-
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * * ** *
24272130 AGACATTCAAATTGGTACAAAATGGACTGTAATGCCAAACTACCCGGCCAAACTGCTATACCAAA
66 AG-CATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAA
* * * * *
24272195 A-TTGATTGAATGCAAAATTAAGAGGAAAATTT-TATAAGTAATAAAATTGGGACGAAATGGACT
130 ATTTGATTGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24272258 GTCATGC
194 GTCATGC
*** * *
24272265 CAAACTACCCAGCCAAACTTTACTTCCAAAATTTGATTGAATGCAAAATTAAGAGGAAATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
** * * * * * **
24272330 TAAGCATTTTAATTGGGATGAAATGGACTATCATGCCAAACTGCCTAACTGAACT-CTCCTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTAC-CCTGCCA
* * * * * * ** *
24272394 AAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAAT
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
*
24272459 TGTCATGG
193 TGTCATGC
* * * *
24272467 CAAACTACCCAACCAAACTACCATGCCAAAA-TAGATTGAATGCAAAATTAAGAGGACATTTCTA
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * ** * *
24272531 CAAGAATTCAAATTGGGACGAAATGAACGGTCATGCCAAACTACCCAACCAAACTGCTATGCTAC
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * *
24272596 AA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTATGAAATGGACT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24272660 G-CAATGC
194 GTC-ATGC
* * * * * *
24272667 TAAACTACCCGGCCAAATTGCCCTACCAAAA-TTGATT-AATGCAAATTTTAGAGGACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * **
24272730 TAAGCATTTAAATAGGGACGAAATGGA----C-TG-C---C-A--C-GCCTAACTACCGAGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * *
24272782 AATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGTGACGAAGA-GGA
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATTGGGACGAA-ATGGA
*
24272845 CAGTCATGC
192 CTGTCATGC
* * * * * * * * *
24272854 AAAAATACCCAACCAAATTTCCTTGCCAAAATTTGATT-AATTGC-AAATTAAAAATGATATTT-
1 CAAACTACCC-A-GAAACTGCCCTGCCAAAATTTGATTGAA-TGCAAAATT-AAGAGGACATTTC
* * *
24272916 TGATACA-CATTCAAATTGGGATGAAATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTG
62 T-ATA-AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTG
* * *
24272980 CCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATT
125 CCAAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* *
24273044 AACAGTCATGC
190 GACTGTCATGC
* * * * * *
24273055 CAAACTACCCAGCTAAATTGCCCAGCCAATATTTAATTGTATGCAAAATTAAGAGGAAATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * *
24273120 TAGGCGTTCAAATTAGGACAAAATGGACTGTCAGGCCAAACTACCCAGCCAAAC-AGCCCTTCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
* ** * *
24273184 ATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGCATT-ATAATTGGGATGAAATGGA
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGA
24273248 C-G-C-T--
192 CTGTCATGC
* * *
24273252 C--A-T-GCC--AAACTGCCCTGCCAAAA-TTGATTGAACGCAAATTTAAGAGGACATTTCTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* ** * * *
24273310 AGCATTCAAATTGGTACGAAATGGACAATCATACCAAACTACCCAGCCAAACTGCCCTGCCAATA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
* * * * *
24273375 TTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTGCGACGAAATGGACTGT
131 TTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
24273440 CATGC
196 CATGC
** * ** * *
24273445 CAAACTA-TTAGCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAG-CTATTTCT
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGAC-ATTTCT
* * * *
24273508 ATAAGCATT-ATACTTGGGACGAAATAGACTGTCATACCAAACTACCCAGCCAAACTACCCAGCC
63 ATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCC
* * * ** * * * *
24273572 AATATTTGATTGAATGCAAAATTAAGAGGACCTTTCTATAAATATTCTAATTTGTACAAAATGGA
127 AAAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
24273637 -T-TC-T--
192 CTGTCATGC
* * * *
24273641 C--A-TGA---A-AAACTTCCATGCCAAAA-TTGATTGAATG-AAAATTAAAATGG-CATTTTTA
1 CAAACT-ACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGA-GGACATTTCTA
* ** * ** * *
24273696 TAAGCATTAAAATTGGGACGAAATTTACTGTCAAGCCAAACCCCCCAGCCAAACTGCCCTACCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * *
24273761 TATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACT
129 AATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACT
24273826 GTCATGC
194 GTCATGC
** ** *
24273833 CAAACTACCCAGCCAAACAACCCTGCCAGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * * *
24273898 TAAGCATTCAAATTGAGACAAAATGGACTGTCATGGCAAGCTACCCAGCCATACTGCCTTGCCAA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAA
* * * * * *
24273963 AATTTGATTGAATTCAAAATTAAG-AGAATATTTTTTATAAACAATCAAATTGGGAC-AAACGGA
129 AATTTGATTGAATGCAAAATTAAGAAG-ACA-TTTCTATAAGCATTCAAATTGGGACGAAATGGA
24274026 CTGT--T--
192 CTGTCATGC
* * * * * *
24274031 ---A-T-GCC--AAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATA
1 CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * *
24274089 AGCATCCAAATTAGGACGAAATGGACTATCATG------T----TG---AACTACCCAGCCAAAA
66 AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
* * * * *
24274141 TTTGATTGAATGCAAAAGT---AAGACATTTTTATAAGTATTCAAATTGGGTCGAAATGTACTGT
131 TTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
* *
24274203 AATGT
196 CATGC
* * * *
24274208 CAAACTACCCAGTCAAACTG-CCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * * * * *
24274272 TAAGCATTAAAATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGA-CTTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-ACCCTGCCA
* * * *
24274336 AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAATGTAC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
* *
24274401 TGTCACGG
193 TGTCATGC
* * * * * *
24274409 GAAACTACCCAGCCAAACAGCCATACCAAAA-TTGATGGAATGC-AAATTTA-A-GACATTTCTA
1 CAAACTACCCAG--AAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* * *
24274470 TATGTATTCAAATTGGGACGAAATGGAC--T--TG-C--A-T-----GTCAAAC-AGCCCTGCCA
64 TAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA-CCCTGCCA
* * * *
24274521 AAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAAATTGGGATGAAATGGTC
128 AAATTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGAC
24274586 TGTCATGC
193 TGTCATGC
* * *
24274594 CAAACTACCCA-ACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCT
1 CAAACTACCCAGA--AA-CTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCT
* *
24274658 ATAAGCATTCAAATTGGGACGAAATGTACTGTCATGCCAAACTACGCAGCCAAACTA
63 ATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTA
24274715 TCCTATCGGG
Statistics
Matches: 8986, Mismatches: 1953, Indels: 1733
0.71 0.15 0.14
Matches are distributed among these distances:
172 21 0.00
173 13 0.00
174 68 0.01
175 16 0.00
176 133 0.01
177 28 0.00
178 26 0.00
179 6 0.00
180 2 0.00
181 8 0.00
182 12 0.00
183 9 0.00
184 22 0.00
185 298 0.03
186 249 0.03
187 582 0.06
188 937 0.10
189 753 0.08
190 49 0.01
191 78 0.01
192 7 0.00
193 19 0.00
194 18 0.00
195 13 0.00
196 17 0.00
197 134 0.01
198 374 0.04
199 139 0.02
200 618 0.07
201 1625 0.18
202 1526 0.17
203 109 0.01
204 29 0.00
205 66 0.01
206 23 0.00
207 18 0.00
208 26 0.00
209 13 0.00
210 15 0.00
211 76 0.01
212 19 0.00
213 43 0.00
214 151 0.02
215 120 0.01
216 13 0.00
217 23 0.00
218 23 0.00
219 32 0.00
220 10 0.00
221 21 0.00
222 11 0.00
223 4 0.00
224 6 0.00
225 12 0.00
226 4 0.00
227 3 0.00
228 32 0.00
229 25 0.00
230 19 0.00
231 22 0.00
232 12 0.00
233 3 0.00
234 4 0.00
236 4 0.00
237 19 0.00
238 114 0.01
239 8 0.00
240 9 0.00
241 6 0.00
242 6 0.00
243 4 0.00
244 10 0.00
247 14 0.00
248 5 0.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (200 bp):
CAAACTACCCAGAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
AGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACTACCCTGCCAAAA
TTTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGT
CATGC
Found at i:24264415 original size:13 final size:13
Alignment explanation
Indices: 24264397--24264421 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24264387 GGACGGTCAT
24264397 GCCAAACTACCCA
1 GCCAAACTACCCA
24264410 GCCAAACTACCC
1 GCCAAACTACCC
24264422 TGCCTTAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.48, G:0.08, T:0.08
Consensus pattern (13 bp):
GCCAAACTACCCA
Found at i:24264960 original size:85 final size:86
Alignment explanation
Indices: 24264813--24265249 Score: 263
Period size: 87 Copynumber: 4.9 Consensus size: 86
24264803 AAACTATCAA
* * * * * *
24264813 GCCAAACTACCCTGGGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTACCTTGGCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAA
24264878 ATTGGGACAAAATGAACTG-T
66 ATTGGGACAAAATGAACTGAT
*
24264898 GCCAAACTACCTTGTCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAA
1 GCCAAACTACCTTGGCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAA
* * *
24264963 ATTGGTACGAAATGGACTGTCAT
66 ATTGGGACAAAATGAACTG--AT
* * * * * *
24264986 GCCAAACTACCTAGCCAAACTAACATGCCATAATTGATTGAATGCAAAATTACGAGAACATTTCT
1 GCCAAACTACCTTG----GC-AA-A----AT--TTGATTGAATGTAAAATTAAGAGGACATTACT
* * *
24265051 ATAAGCATT-AAATTTGGGACGAAATGGACTGTCAT
54 ATAAACATTCAAA-TTGGGACAAAATGAACTG--AT
* * * * * * * * * *
24265086 GCCAAACTGCCCT-ACAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCCATAAGCGTTTAA
1 GCCAAACTACCTTGGCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAA
* ** * *
24265150 ATTAGGATGAAATAAACTATCAT
66 ATTGGGACAAAATGAAC--TGAT
* * * * * * * *
24265173 ACCACACTACCCT-GCCAAACTTGATTGAATGCT-AAATTAAGAGAACATTTCTATAAGCATTCA
1 GCCAAACTACCTTGGCAAAATTTGATTGAATG-TAAAATTAAGAGGACATTACTATAAACATTCA
* *
24265236 AATTGCGACGAAAT
65 AATTGGGACAAAAT
24265250 AGACAATCAA
Statistics
Matches: 286, Mismatches: 46, Indels: 38
0.77 0.12 0.10
Matches are distributed among these distances:
85 74 0.26
87 111 0.39
88 17 0.06
89 3 0.01
92 1 0.00
93 3 0.01
94 3 0.01
95 2 0.01
98 2 0.01
99 3 0.01
100 67 0.23
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.28
Consensus pattern (86 bp):
GCCAAACTACCTTGGCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAA
ATTGGGACAAAATGAACTGAT
Found at i:24265114 original size:87 final size:86
Alignment explanation
Indices: 24265019--24265271 Score: 299
Period size: 87 Copynumber: 2.9 Consensus size: 86
24265009 CATGCCATAA
* * *
24265019 TTGATTGAATGCAAAATTACGAGAACATTTCTATAAGCATTAAATTTGGGACGAAATGGACTGTC
1 TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAA-TTGGGACGAAATAGACTATC
* *
24265084 ATGCCAAACTGCCCTACAAAAT
65 ATGCCAAACTACCCTACAAAAC
* * * * * * *
24265106 TTGATTGAATGCAAAATTAAGAGGATATTTCCATAAGCGTTTAAATTAGGATGAAATAAACTATC
1 TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGC-ATTAAATTGGGACGAAATAGACTATC
* * * *
24265171 ATACCACACTACCCTGCCAAAC
65 ATGCCAAACTACCCTACAAAAC
* * *
24265193 TTGATTGAATGCTAAATTAAGAGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAATC
1 TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATT-AAATTGGGACGAAATAGACTATC
*
24265258 AAGCCAAACTACCC
65 ATGCCAAACTACCC
24265272 AGTCAAACTG
Statistics
Matches: 135, Mismatches: 29, Indels: 4
0.80 0.17 0.02
Matches are distributed among these distances:
86 2 0.01
87 128 0.95
88 5 0.04
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (86 bp):
TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTAAATTGGGACGAAATAGACTATCA
TGCCAAACTACCCTACAAAAC
Found at i:24265552 original size:88 final size:88
Alignment explanation
Indices: 24265393--24265568 Score: 230
Period size: 88 Copynumber: 2.0 Consensus size: 88
24265383 TCTTGTCAAT
* *
24265393 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCGTTCAAATTTGGACAAAATGGACTT
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAAATTTGGACAAAATGGACTA
* * *
24265458 TTATGCCAAATTACCCTGCCAAA
66 TAATGCCAAACTACCCAGCCAAA
* * * * *
24265481 ATTTGATTGAATGTAAAATTAAGAGGACATTTC-TATAGACATTCAAA-TTGGTACGAAGTTGAC
1 ATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAG-CATTCAAATTTGG-ACAAAATGGAC
24265544 TATAATGCCAAACTACCCAGCCAAA
64 TATAATGCCAAACTACCCAGCCAAA
24265569 CTGCTCTACC
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
87 8 0.11
88 68 0.89
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.30
Consensus pattern (88 bp):
ATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAAATTTGGACAAAATGGACTA
TAATGCCAAACTACCCAGCCAAA
Found at i:24265638 original size:289 final size:288
Alignment explanation
Indices: 24264318--24274716 Score: 2212
Period size: 289 Copynumber: 35.7 Consensus size: 288
24264308 AGCCAAACGG
* * * * *
24264318 CCCTGCCAATATTTGATTGAATGAAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAA-TTGGACG
* ** * * * * * * * * *
24264383 AAATGGACGGTCATGCCAAACTACCCAGCCAAACTACCCTGCCTTAATTTGAGTAAATGAAAAAT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACC-AAAATTGATTGAATGCAAAAT
* * * * *
24264448 TAATATGACATTTCTGTAAGAGTTCAAA-TATGGATGAAATGGACAG-TCATGCCAAACTACCCA
129 TAAGAAGACATTTCTATAAGA-ATCAAATTA-GGACGAAATGGAC-GTTCATGCCAAACTACCCA
* * * * *
24264511 GCCAAA-TTTCCCA-GCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACTTTC
191 GCCAAACTAT--CATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTC
** * * *
24264574 AAATTTTGACGAAATGCACTGTCATGCCAAACTACCCAACCAA
253 AAATTGGGACAAAATGGACTGTCATGCCAAACT-------CTA
** * *
24264617 CCTTCTCTGCTGAAA-TTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGG
1 -C--C-CTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-G
*** * * * * * * *
24264681 GACGAAA-TGAACTGCCACGCCAAACTACCTAGGCAAACTGCTCGACCAATATTTTATTGAATGA
61 GACGAAATTG-ACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGC
* * * *
24264745 AAAATTATGAGGACATTT-TAATAA-ACATTCATATTAGGACGAAATGAAC-TGTCATGCCAAAC
124 AAAATTAAGAAGACATTTCT-ATAAGA-A-TCAAATTAGGACGAAATGGACGT-TCATGCCAAAC
* * * * ** * *
24264807 TATCAAGCCAAACTACCCTGGGAATATTTGATTGATTGTAAAATTAAGAGGACATTTCTATAAGC
185 TACCCAGCCAAACTATCATGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGC
* *
24264872 ATTCAAATTGGGACAAAATGAACTG---TGCCAAA--CTA
249 GTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTCTA
* * * *
24264907 CCTTGTCAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTATAAACATTCAAATTGGTACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG-ACG
* * * * * * * *
24264972 AAATGGACTGTCATGCCAAACTACCTAGCCAAACTAAC-ATGCCATAATTGATTGAATGCAAAAT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACT-GCTCTACCAAAATTGATTGAATGCAAAAT
* * * *
24265036 TACG-AGAACATTTCTATAAGCATTAAATTTGGGACGAAATGGAC-TGTCATGCCAAACT-----
129 TAAGAAG-ACATTTCTATAAGAATCAAA-TTAGGACGAAATGGACGT-TCATGCCAAACTACCCA
* * *
24265094 GCC---CTA-CA----AAATTTGATTGAATGCAAAATTAAGAGGATATTTCCATAAGCGTTTAAA
191 GCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAA
* ** ** * * *
24265151 TTAGGATGAAATAAACTATCATACC--ACACTA
256 TTGGGACAAAATGGACTGTCATGCCAAACTCTA
* *
24265182 CCCTGCC-AAACTTGATTGAATGCT-AAATTAAGAGAACATTTCTATAAGCATTCAAATTGCGAC
1 CCCTGCCAAAATTTGATTGAATG-TAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GAC
* * * * * * *
24265245 GAAATAGACAATCAA-GCCAAACTACCCAGTCAAACTG-TCCTGCGAATATTTGATTGAATGCAC
64 GAAATTGACTAT-AATGCCAAACTACCCAGCCAAACTGCT-CTACCAA-AATTGATTGAATGCAA
* * * * *
24265308 AATTAAGAGGCCATTTCTATAA-ACATTCAAATTAAGACGAAATGGACGTTCATGCCAAAATAAC
126 AATTAAGAAGACATTTCTATAAGA-A-TCAAATTAGGACGAAATGGACGTTCATGCCAAACTACC
* * *
24265372 AAGCCAAACTATCTTGTCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCGTT
189 CAGCCAAACTATCATGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCGTT
* * *
24265436 CAAATTTGGACAAAATGGACTTTTATGCCAAA-T-TA
252 CAAATTGGGACAAAATGGACTGTCATGCCAAACTCTA
24265471 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTAT-AGACATTCAAATTGGTAC
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGG-AC
* *
24265535 GAAGTTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTTATTGAATGCAAAAT
64 GAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAAAT
* * *
24265600 TAAGAAGACATTTTTATAAGTAATAAAATTAGGACGAAATTGAC-TGTCATGCCAAACTACCCAG
129 TAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACCCAG
* * * * *
24265664 CCAAACT-TCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTATAATCGTTTAA
192 CCAAACTATCA-TGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAA
* *
24265728 ATTGGGACTAAATGGACTGTCATGACAAACTGTCTAACCAAA
255 ATTGGGACAAAATGGACTGTCATGCCAAAC--TCT------A
* * * * *
24265770 CTTTCCTACCAAAATTTGATTGAAT-TCGAACTTACGAGGACATTTCTATAAACATTCAAATTAG
1 C---CCTGCCAAAATTTGATTGAATGT-AAAATTAAGAGGACATTTCTATAAGCATTCAAATT-G
* * * * * ** *
24265834 GACGAAATTGACTGTCATGGCAAACTACCCAACCAAACTACGGTGCCAAAATTGATTGAATGCAA
61 GACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAA
* *
24265899 AATTAAG-AGAACATTTCTATAAGAATTCAAATTGGGACGAAATGGACGGTCATGCCAAACTACC
126 AATTAAGAAG-ACATTTCTATAAGAA-TCAAATTAGGACGAAATGGACGTTCATGCCAAACTACC
* * * * **
24265963 CAGCCAAAATACCATGCCAAAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGAATTCA
189 CAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCA
* *
24266028 AATTGGGACAAAATGGACGGTCATGCCAAACTACCCAA
254 AATTGGGACAAAATGGACTGTCATGCCAAACT---CTA
*
24266066 CCAAACTGCCATGCTACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAA
1 CC---CTGCCA----A-AATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAA
* * * * * * *
24266130 TTGGTACGAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCAAAATTGATT-AAT
58 TTGG-ACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAAT
* * * * * * *
24266194 GCAAATTTTAGAGGGCATTTCTATAAGCATTTAAA-TAGGGACAAAATGGA---T--TG----AC
122 GCAAAATTAAGAAGACATTTCTATAAG-AATCAAATTA-GGACGAAATGGACGTTCATGCCAAAC
* * * * *
24266249 -A--C-GCCTAACTACTGA-GCCAAAATTTGATTGCATGCATAATTAAGAGGACATTTCTATAAT
185 TACCCAGCCAAACTA-TCATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG
* * * * * *
24266309 AGTTCAAATTGGGACGAAGA-GGACAGTCATGCAAAAATACCCAA
248 CGTTCAAATTGGGAC-AAAATGGACTGTCATGC--CAA-ACTCTA
* * * * * *
24266353 CCAAATTTCCTTGCCAAAATTTG-TTTAAT-TGCAAATTAAAAATGACATTTCGATACA-CAATC
1 -C------CC-TGCCAAAATTTGATTGAATGT-AAAATT-AAGAGGACATTTCTATA-AGCATTC
* * * * * * * * *
24266415 AAATTGGGATGAAATGGACTGTCATGCAAAACAACCCAGCCAAACTTCCCTGCCAAAATTGATTG
55 AAATT-GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTG
* * * ** *
24266480 AATGCAAAACTAAGAGGACATTTCTGTAA-ACATTCAAATT-GGTACGAAATTAATAG-TCATGC
119 AATGCAAAATTAAGAAGACATTTCTATAAGA-A-TCAAATTAGG-ACGAAATGGA-CGTTCATGC
* * * ** * *
24266542 CAAACAACCCAACCAAATTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTA
180 CAAACTACCCAGCCAAACTATCATGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTA
* ** * * ** * *
24266607 TAGGTATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCAACCAAATTG
244 TAAGCGTTCAAATTGGGACAAAATGGACTGTCATGCC--A-AA--C--TC----TA
* * * * *
24266663 CCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACG
** * * * * * * * * *
24266728 AAATAAACTGTCATGCCAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAAT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAAAAT
* * * * *
24266793 TAAGTAGTCATTTCTATAAGCATTATAATTGGGACGAAATGGAC-TGTCATGCCAAACT-----G
129 TAAGAAGACATTTCTATAAGAATCA-AATTAGGACGAAATGGACGT-TCATGCCAAACTACCCAG
* * * * * * *
24266852 ------T-TC-TACCAAAATTAAATGAACGCAAAATTAAAAGGACATTTCTATAAGCATTCAAAT
192 CCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAAT
* * *** *
24266909 TGGTACGAAATGGAAAATCATACCAAACTACTCA
257 TGGGACAAAATGGACTGTCATGCCAAACT-CT-A
* * * *
24266943 GCTAAATTGTCCTGCCAATATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAA
1 -C--------CCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
** * * * * * * * *
24267008 ATTAGGACGAAATAAACTGTCATGCCAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTGA
57 ATT-GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGA
* * * * * *
24267073 ATGAAAAATTAAGTAGTCATTTCTAATAAGCATTATAATTGGGACGAAATGGAC-TGTCATGCCA
120 ATGCAAAATTAAGAAGACATTTCT-ATAAGAATCA-AATTAGGACGAAATGGACGT-TCATGCCA
* * * *
24267137 AACGT-TCTA-CCAAA--AT--T----AA----A-TGAACGCAAAATTAAAAGGACATTTCTATA
182 AAC-TACCCAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * *** *
24267187 AGCATTCAAATTGGTACGAAATGGAAAATCATACCAAACTACTCA
246 AGCGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-CT-A
* * * *
24267232 GCTAAATTGTCCTGCCAATATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAA
1 -C--------CCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * * * **
24267297 ATTGGGACGAAATGGACTGTCATGCCAAACTACCTAGCCAAACAGCCCTGCCAATGTTTGATTGA
57 ATT-GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGA
** * * * * *
24267362 ATGCAAAATTAAGAACTCATTTCTATAAGCATTATACTTGGGACGAAATGGA-TTGTCATGCCAA
120 ATGCAAAATTAAGAAGACATTTCTATAAGAATCA-AATTAGGACGAAATGGACGT-TCATGCCAA
* * *
24267426 ACTACCCCGCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
183 ACTACCCAGCCAAACTATCATGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
* * * * * * *
24267491 ACATTCAAATTTGGACAAAATGAATTGTCGTGACAAACT-T-
247 GCGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTCTA
* * * * * * * *
24267531 CCATGCCAAAA-TTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCACTAAAATTGGGACA
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACG
* * * * * *
24267595 AAATGGACTATCAA-GCCAAACTACCCAGCTAAACTGCCCTGCCAATATTTTATTGAATGCAAAA
65 AAATTGACTAT-AATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAAAA
* * * *
24267659 TTAAGAGGACATTTCTATAAGCATTCAAATT-GGGCTGAAATGGA-ATGTCATGCCAAACTACCC
128 TTAAGAAGACATTTCTATAAG-AATCAAATTAGGAC-GAAATGGACGT-TCATGCCAAACTACCC
* * * * * *
24267722 AGCCAAACAACCTTGCTAGAATTTGATTGAATGCAAAATTAAGAGGATC-TTTCTATAAGCATTA
190 AGCCAAACTATCATGCCA-AATTTGATTGAATGCAAAATTAAGAGGA-CATTTCTATAAGCGTTC
*
24267786 AAATTGGAACAAAATGGACTGTCATGCCAAACTATCCAGCCATA
253 AAATTGGGACAAAATGGACTGTCATGCCAAAC--T-----C-TA
* * ** * *
24267830 CTGCCCTGCCAAAATTTCATTGAAT-TCAAAATTAAGAGAATTTTTTTATAAACATTCAAATTGG
1 ---CCCTGCCAAAATTTGATTGAATGT-AAAATTAAGAGGACATTTCTATAAGCATTCAAATT-G
* * * * * *
24267894 GACAAAATGGACTATCATGCCAAACT-----GTC---CTGC-C-A--AAATTTGATGGAATGCAA
61 GACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAA
* * * *** *
24267947 AATTAAGAAGAGATTTCTATAAGCATTCAAATTAGGACGAAATGGAC-TATAATGTTGAACGACC
126 AATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACC
**
24268011 CAG-----C---CA----AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCA
189 CAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTC-
* * * *
24268064 AAATTGGGTCAAAATGTACTGTAATGTCAAACTACCCAATCAAA
253 AAATTGGGACAAAATGGACTGTCATGCCAAACT---C--T---A
* * * *
24268108 CTGCCCTGCCAAAATTAGATTGAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGG
1 ---CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GG
* * * * *
24268172 ATGAAATTGACTATCATGCTAAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATT
62 ACGAAATTGACTATAATGCCAAACTACCCAGC-CAA--A-CT-G-----C-T-C-TACCAAAA-T
* * * * *
24268237 TGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATTAAAAATGGGACGAAATGTACAG-T
113 TGATTGAATGCAAAATTAAGAAGACATTTCTATAAGA-A-TCAAATTAGGACGAAATGGAC-GTT
* * ** * * * * * *
24268300 CACAG-GAAACTACATAGCCAAA-TAGCCATACCAAAATTGGTGGAATTCAAAATT-A-A-GACA
175 CA-TGCCAAACTACCCAGCCAAACTA-TCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACA
* ** * * * * *
24268360 TTTCTATATGTATTCAAATTGGGACGAAATGCACATG-CATG-TAAA-ACTG
238 TTTCTATAAGCGTTCAAATTGGGACAAAATGGAC-TGTCATGCCAAACTCTA
* * * *
24268409 CCCTGCCAAAATTTGATTGAAAGCAAAATTAAGTA-GACATTTTTATAAGGATTCAAATTGGGAC
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAG-AGGACATTTCTATAAGCATTCAAATT-GGAC
* * * * *
24268473 GAAATGGACTGTCATGCCAAACTACCCAG-CAAATTTG-TCCTACCAAAATTTGATT-AGATTCA
64 GAAATTGACTATAATGCCAAACTACCCAGCCAAA-CTGCT-CTACCAAAA-TTGATTGA-ATGCA
* * * * *
24268535 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTAC-TATCATGCCAAACTGC
125 AAATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACT-A
**
24268599 CCTATCGGGAGAAAATGGACAGTCATGCCAAATTACCCAGCCAAACTGCCTTGCCAAAATTGGAT
187 CC---C---AGCCAA---AC--T-AT--C--A-T-----GCCAAA-----TT--------T-GAT
* * * * *
24268664 TGAATGCAAAATTAATAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATCCC
216 TGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACAAAATGGACTGTCATGCC
24268729 AAACTACCTGGTCAAACTA
281 -AA--A-C---T----CTA
* * * * * *
24268748 CCCTTCTAAAATTTGATTGAAT-TCAAGATTAATAGTACATTTCTATAAGCATTAAAATT-----
1 CCCTGCCAAAATTTGATTGAATGT-AAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGACG
* * * ** * * * * *
24268807 ---TT-A-TTTAATGCAAAATTA---AGAGAAAAT-TTCTA-TAAGAATTCAAATTTGAA--AAA
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATT--GA-TTGAATGCAA
* * * * ** * ** * * * * * * *
24268860 AAAT-GGACTGTCATGCCAAACTACCCAACCAAATT-GCCTTGCCAAAATTG--TTTAAATGCAA
126 AATTAAGA-AGACATTTC-TA-TA-AGAATCAAATTAG----GACGAAATGGACGTT-CATGCCA
* ** * * * * ** * * * * **
24268921 AATTA---AGAGAACATTTTTAT--AAGAATTAAAATTG--GGACAAAA-T-GGACTGTCA-CGC
182 AACTACCCAGCCAA-ACTATCATGCCA-AATT-TGATTGAATG-CAAAATTAAGA-GGACATTTC
* * ** * * * *
24268976 -A-AAAC-TACCCA----GCCAAACT--ACCT-T-A--CCAAAATTTGA
242 TATAAGCGTTCAAATTGGGACAAAATGGA-CTGTCATGCCAAACTCT-A
*** * * * ** * * * **
24269012 TTAAATG-CAAAATTAAGA-TGACAT-TTATA-TAAGAATACAAATTGGGACGA-AATGGATTGT
1 --CCCTGCCAAAATT-TGATTGA-ATGTAAAATTAAGAGGAC--ATT---TCTATAA-GCATTCA
* * ** * * *
24269072 AA-T-G-CCAAACT-AC-CCAA--CCAAATTGCCCAGCCAAA-------------ATTGATTAAA
56 AATTGGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAA
* * * * *
24269117 TGCAAAATTAAG-AGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGAC-TGTCATGCAAA
121 TGCAAAATTAAGAAG-ACATTTCTATAAGAA-TCAAATTAGGACGAAATGGACGT-TCATGCCAA
* * * * * *
24269180 ACTACCCAGCCAAACTACCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAG
183 ACTACCCAGCCAAACTATCATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
* * * * * *
24269245 GCATACAAATTGGGACGAAATGAACTGTCATGCCAAGCTACCCA
247 GCGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT--CTA
* * * * * * *
24269289 GCAAAACTATTCTACCAAAATTT-ATTAAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAA
1 -C----C----CTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * ** * *
24269353 ATTAGGA-GAAAATAGACTGTCGTGCCAAACTATCCAACCAAACTGC-CTTACCAAAATTTGATT
57 ATT-GGACG-AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTC-TACCAAAA-TTGATT
** * * * * * * * * *
24269416 GAATGCAAAATTTGGAGGACATTTCTTTAAGCATTTAAATTGGGATGGAATAGACTTTCATGCCA
118 GAATGCAAAATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGTTCATGCCA
* * ** * * *
24269481 AACTACCCAGCAAAATTGGCCA-GCAAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATA
182 AACTACCCAGCCAAACT-ATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * *
24269545 AGCATTCAAATTAGGG-CGAAATGGACTGTCATGCCAAACTGT-
246 AGCGTTCAAATT-GGGACAAAATGGACTGTCATGCCAAACTCTA
* * * * * *
24269587 -CTTGTCAAAATTGGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGGGACA
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACG
* * * * * * * * * * * *
24269651 AAATGGACTGTCATCCCAAACTACCTAGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGAT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAA-TTGATTGAATGCAAAAT
* * * ** * ** * **
24269716 TAAG-AGTACATTTCTATAAGCATTCAAATTTA--ATTG-AATGTAAAATT-AAGAGAAAATTTC
129 TAAGAAG-ACATTTCTATAAG-AATCAAA-TTAGGA-CGAAATG-GACGTTCATGCCAAACTACC
* * * * * * * * * * ** *
24269776 TA--TAAGC-AT--T--CAAATTTGA---AA--AAAAAAT-GGACTGTCA-TGCAAAACTACCCA
189 CAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGA-GGACATTTC--TA-TAAGCG
** * * * * *
24269827 ACCAAATTGCCCTG-CAAAAATTGATTG-AATG-CAAAAT-TA
250 TTCAAATTG---GGAC-AAAATGGACTGTCATGCCAAACTCTA
* ** * * * * *
24269866 ---AGAGAATATTTTTATAAGAAT-TAAAATT--G-GGACA-----A-AATGGA--C----TGTC
1 CCCTGCCAA-AATTTGAT-TGAATGTAAAATTAAGAGGACATTTCTATAA-GCATTCAAATTG-G
** * * *
24269912 ACGCAAA---ACTACCCA-GCCAAACCACCTTA-CCAAA-------A-----TTTGATTGAATG-
62 ACG-AAATTGACTA-TAATGCCAAACTACC-CAGCCAAACTGCTCTACCAAAATTGATTGAATGC
* * * * **
24269959 AAGAATTAAG-AGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAATGGAC-TGTCATGCCAAA
124 AA-AATTAAGAAG-ACATTTCTATAAG-AATCAAATTAG-GACGAAATGGACGT-TCATGCCAAA
* * ** * * *
24270022 CTACCCAACCAAATTGCCTTGCCAAAATTGAGTTGAATGCAAAATTAAGAGAACAGTTT-TATAA
184 CTACCCAGCCAAACTATCATGCCAAATTTGA-TTGAATGCAAAATTAAGAGGACA-TTTCTATAA
** * * * * *
24270086 GAATTAAAATTGGAACAAAATGGATTGTCACGCAAAACTACCCAGCCAAACTA
247 GCGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-----------CTA
* * * * * * *
24270139 CCTTACCAAAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGA-G
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACG
* ** * ** *
24270203 AAAATGGACTATTGTGCCAAACTACCCAGCAAAACTATTCTACCAAAATTTATTGAATGCAAAAT
65 -AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAAAT
* * * * * ** * *
24270268 TAAG-AGTAAATTTCCATAATCATTCAAATTGGGAAAAAAATGGAC-TGTCGTGCCAAACTATCC
129 TAAGAAG-ACATTTCTATAA-GAATCAAATTAGG-ACGAAATGGACGT-TCATGCCAAACTACCC
* * * * * * * *
24270331 AACCAAACTACCTTACCAAAATTTGATTGAATGCAAAATT-TGAAGGACATTTCTTTAAGCATTT
190 AGCCAAACTATCATGCC-AAATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCGTTC
*** * * *
24270395 AAATTGGGATGGAATAGACTATCATGCCAAACTACCCA
253 AAATTGGGACAAAATGGACTGTCATGCCAAACT--CTA
*
24270433 GCAAAATTGGCCTGCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 -C--------CCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * * *
24270497 ATTAGGGCGAAATAGACTGTCATGCCAAACT-----GCC---CAGC-C-A--AAATTTGATAGAA
57 ATT-GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAA
* * * *
24270550 TGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGAC-TGTCATGCCAAA
121 TGCAAAATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAA
* *
24270614 CT-----G-C---C--T--TGCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATAGG
184 CTACCCAGCCAAACTATCATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG
** * * * *
24270666 CACTCCAATTGGGACAAAACGGATTGTCATGCCAAACTACCCAACCAAA
248 CGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT-------C-TA
* * *
24270715 CTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGAGGACATTTCTATAAGCATTCAAATTGG
1 C--CC-TGCCAAAATTTGATTGAATGTAA-AATTAAGAGGACATTTCTATAAGCATTCAAATT-G
* * ** * * * * * * *
24270779 GATGAAATAGACGGTCACGCCAAACTACCCTGCCAAATTGC-CATGCTAAAATTGATTGAATGCT
61 GACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTC-TACCAAAATTGATTGAATGCA
* * * *
24270843 AAATTAATAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTT-ATGCAAAACTAC
125 AAATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGAC-GTTCATGCCAAACTAC
* * * * * * * * * *
24270907 CCAGCCAAACTACCCTGGCAAAATTGATTGAACGCCAAATTTAGAGGACAATTCTAAAAGCATTC
188 CCAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTC
** *
24270972 AAATTGGGATGAAATGGATTGTCATGCCAAA--CTA
253 AAATTGGGACAAAATGGACTGTCATGCCAAACTCTA
* * * ** * ****
24271006 TCCAGCC-AAATTACCTAGCTAAACTGCCCAA-ACAAAATT-TGATGGA-ATGAAAAATTAAGAT
1 CCCTGCCAAAATT---T-G----ATTG---AATGTAAAATTAAGA-GGACAT-TTCTA-T-A-A-
* *** * * ** *** * ***
24271067 GGCATTTAAATAAATATTC-AAATTGGGAC-AAAATAGACAGTCATGCAAAAATGCCCAGCAAAA
49 -GCATTCAAAT---TGGACGAAATT--GACTATAAT-GCCAAAC-T--ACCCA-G-CCA-AACTG
* * * * *
24271130 TTTTCTTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCGATAA-ACATACAAATT-G
101 --CTC-TACCAAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAAGA-AT-CAAATTAG
** * * * * * *
24271193 GAACGAAATGGAC-TGTCATGTAAAACTATCTAGCCAAAC-ATCCCTGCCAAAATTGACTAAATG
160 G-ACGAAATGGACGT-TCATGCCAAACTACCCAGCCAAACTAT-CATGCCAAATTTGATTGAATG
* * * * * *
24271256 CAAAATTAATAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCATGTCAAA--C
222 CAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACTC
24271319 TA
287 TA
* * * * *
24271321 CCCAG-CAATATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAATTGAGA
1 CCCTGCCAAAATTTG-ATTGAATGTAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTG-GA
* * * * * * * * *
24271382 CGAAATGGACTATCAA-GCAAAACTTCCAAGCAAAACAGCCCTGCCAATATTTGATTGAATGCAA
63 CGAAATTGACTAT-AATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAA
* * * *
24271446 AATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGAC-TGTCATGCCAAACTACC
126 AATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACC
* * * * * * * *
24271510 CTG-C---C--T--T----AATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAGAGTTCA
189 CAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCA
* * *
24271563 AATAT-GGA-AGAAATGGACAGTCATTCCAAACTCCCAGCCAAATTT
254 AAT-TGGGACA-AAATGGACTGTCATGCCAAACT------C----TA
* * * * * *
24271608 CCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTGGAACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGG-ACG
* * * * * * * * * *
24271673 AAATGGACTATCATGCAAAACTATCTAGCTAACCTTCTCTATCGAAATTGATTGAATGCAAAATT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATT
* * * * * * *
24271738 AAG-AGAACGTTTCTATAAGCATTTAAATTGGGACTAAATGAAC-TGTCATG-C-AA-TA-CTA-
130 AAGAAG-ACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACCCAG
* * * *
24271796 -C---C---C-TGCCAAAATTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAAT
192 CCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAAT
** ** * * *
24271852 TACGAGGAAATAGACAGTCATGCCAAACTACCCA
257 TGGGACAAAATGGACTGTCATGCCAAACT--CTA
* * * * **
24271886 GCCAAATTGTCCTACCAATGTTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAA
1 -CC---CTG-CC-A--AA-ATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * * * * * * *
24271951 ATTGCGACGAAATGGACTGTCATGCCAAAATAACAAGCCAAACTAC-CTTGCCAATATTTGATTG
57 ATTG-GACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTC-TACCAA-AATTGATTG
* * * * *
24272015 AATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAAATT-GGACAAAATGGACTTTTATGCC
119 AATGCAAAATTAAGAAGACATTTCTAT-AAG-AATC-AAATTAGGACGAAATGGACGTTCATGCC
*
24272078 AAACT-----G-C---C---C-TGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTAT
181 AAACTACCCAGCCAAACTATCATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
* * * **
24272130 -AGACATTCAAATTGGTACAAAATGGACTGTAATGCCAAACTACCCGG
245 AAG-CGTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT---CTA
* * * * *
24272177 CCAAACTGCTATACCAAAA-TTGATTGAATGCAAAATTAAGAGGAAAATTT-TATAAGTAATAAA
1 CC---CTG-----CCAAAATTTGATTGAATGTAAAATTAAGAGG-ACATTTCTATAAGCATTCAA
* * * * *
24272240 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCAGCCAAACT-TTACTTCCAAAATTTGATTG
57 ATT-GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCT-CTACCAAAA-TTGATTG
* * * ** * *
24272304 AATGCAAAATTAAGAGGAAATTTCTATAAGCATTTTAATTGGGATGAAATGGAC-TATCATGCCA
119 AATGCAAAATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCA
* * * ** * * * * * *
24272368 AACTGCCTAACTGAACTCTCCTGCCAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATA
182 AACTACCCAGCCAAACTATCATGCC-AAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * ** * *
24272433 AACATTCAAATTGGGACGAAATTAATTGTCATGGCAAACTACCCAACCAAACTA
246 AGCGTTCAAATTGGGACAAAATGGACTGTCAT-GC---C-A---AA-C--TCTA
* * * * *
24272487 CCATGCCAAAA-TAGATTGAATGCAAAATTAAGAGGACATTTCTACAAGAATTCAAATTGGGACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGACG
** * * * * * *
24272551 AAA-TGAACGGTCATGCCAAACTACCCAACCAAACTGCTATGCTACAATTGATTGAATGCAAAAT
65 AAATTG-ACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAAAT
* * * * * *
24272615 TAAGAGGACATTTCTATAAGCATTCAAATT-GGTATGAAATGGAC-TGCAATGCTAAACTACCCG
129 TAAGAAGACATTTCTATAAG-AATCAAATTAGG-ACGAAATGGACGTTC-ATGCCAAACTACCCA
* ** * * * * * * *
24272678 GCCAAATTGCCCTACCAAAATTGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAA
191 GCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAA
* * * * *
24272742 TAGGGACGAAATGGACTGCCACGCCTAA--CTA
256 TTGGGACAAAATGGACTGTCATGCCAAACTCTA
** * * * *
24272773 CCGAGCCAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGTGAC
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTG-GAC
* * * * * * * *
24272837 GAAGA-GGAC-AGTCATGCAAAAATACCCAACCAAATTTC-CTTGCCAAAATTTGATT-AATTGC
64 GAA-ATTGACTA-TAATGCCAAACTACCCAGCCAAACTGCTC-TACCAAAA-TTGATTGAA-TGC
* * * * * * *
24272898 -AAATTAAAAATGATATTT-TGATACACATTCAAATTGGGATGAAATGGAC-TGTCATGCAAAAC
124 AAAATTAAGAA-GACATTTCT-ATA-AGAATCAAATTAGGACGAAATGGACGT-TCATGCCAAAC
* * * *
24272960 TACCCAGCCAAACT-TCCCTGCCAAAATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAAC
185 TACCCAGCCAAACTAT-CATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGC
* * * ** *
24273024 ATTCAAATTGGTACGAAATTAACAGTCATGCCAAACTACCCAGCTAAA
249 GTTCAAATTGGGACAAAATGGACTGTCATGCCAAACT------CT--A
* * * * * * * *
24273072 TTGCCCAGCCAATATTTAATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAGG
1 ---CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GG
* * * * * * * * * **
24273137 ACAAAATGGACTGTCAGGCCAAACTACCCAGCCAAACAGCCCTTCCAATATTTGATTGAATAAAA
62 ACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAA
* * * * * *
24273202 AATTAAGAAGTCATTTCTATAAGCATTATAATTGGGATGAAATGGACGCTCATGCCAAACT----
126 AATTAAGAAGACATTTCTATAAGAATCA-AATTAGGACGAAATGGACGTTCATGCCAAACTACCC
* * * *
24273263 -G-C---C---C-TGCCAAAATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAA
190 AGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAA
* * ** * *
24273319 ATTGGTACGAAATGGACAATCATACCAAACTACCCAGCCAAACTG
255 ATTGGGACAAAATGGACTGTCATGCCAAACT-----------CTA
* * *
24273364 CCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTGCGACG
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTG-GACG
* * * ** * * * ** *
24273429 AAATGGACTGTCATGCCAAACTA-TTAGCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAAT
65 AAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAAAAT
* * * * * *
24273493 TAAGAAG-CTATTTCTATAAGCATTATACTTGGGACGAAATAGAC-TGTCATACCAAACTACCCA
129 TAAGAAGAC-ATTTCTATAAGAATCA-AATTAGGACGAAATGGACGT-TCATGCCAAACTACCCA
* * *** *
24273556 GCCAAACTACCCA-GCCAATATTTGATTGAATGCAAAATTAAGAGGACCTTTCTATAAATATTCT
191 GCCAAACTA-TCATGCCAA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCA
* * * * **
24273620 AATTTGTACAAAATGGATTCTCATGAAAAACT-T-
254 AATTGGGACAAAATGGACTGTCATGCCAAACTCTA
* * * *
24273653 CCATGCCAAAA-TTGATTGAATG-AAAATTAAAATGG-CATTTTTATAAGCATTAAAATTGGGAC
1 CCCTGCCAAAATTTGATTGAATGTAAAATTAAGA-GGACATTTCTATAAGCATTCAAATT-GGAC
* * ** * *
24273715 GAAATTTACTGTCAA-GCCAAACCCCCCAGCCAAACTGCCCTACCAATATTTGATTGAATGCAAA
64 GAAATTGACTAT-AATGCCAAACTACCCAGCCAAACTGCTCTACCAA-AATTGATTGAATGCAAA
* * * * *
24273779 ATTAATAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGAC-TGTCATGCCAAACTACCC
127 ATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACCC
* * * * * *
24273843 AGCCAAACAACCCTGCCAGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCA
190 AGCCAAACTATCATGCCA-AATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCA
* * *
24273908 AATTGAGACAAAATGGACTGTCATGGCAAGCTACCCAGCCATA
254 AATTGGGACAAAATGGACTGTCATGCCAA---A--C--TC-TA
* * * * *
24273951 CTGCCTTGCCAAAATTTGATTGAAT-TCAAAATTAAGAGAATATTTTTTATAAACAATCAAATTG
1 C--CC-TGCCAAAATTTGATTGAATGT-AAAATTAAGAGGACA-TTTCTATAAGCATTCAAATT-
** * * *
24274015 GGAC-AAACGGACTGTTATGCCAAACT-----G-C---C--CT-T-CCAAAATTTGATGGAATGC
60 GGACGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAA-TTGATTGAATGC
* * * ***
24274066 AAGATTAAGAAGTCATTTCTATAAGCATCCAAATTAGGACGAAATGGAC-TATCATGTTGAACTA
124 AAAATTAAGAAGACATTTCTATAAGAAT-CAAATTAGGACGAAATGGACGT-TCATGCCAAACTA
* * **
24274130 CCCAG-----C---CA----AAATTTGATTGAATGCAAAAGT-A-A-GACATTTTTATAAGTATT
187 CCCAGCCAAACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTT
* * * * *
24274180 CAAATTGGGTCGAAATGTACTGTAATGTCAAACTACCCAGTCAAA
252 CAAATTGGGACAAAATGGACTGTCATGCCAAACT---C--T---A
* * * *
24274225 CTGCCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAAATTGGGA
1 C--CCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGA
* * * * * *
24274290 TGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGACT-TGCCAAAATTTGATTGAATGCAA
63 CGAAATTGACTATAATGCCAAACTACCCAGCCAAACTG-CTCTACCAAAA-TTGATTGAATGCAA
* * * * * **
24274354 AATTAAGAGGACATTTCTATAA-ACATTAAAATTGGGACGAAATGTAC-TGTCACGGGAAACTAC
126 AATTAAGAAGACATTTCTATAAGA-A-TCAAATTAGGACGAAATGGACGT-TCATGCCAAACTAC
* * * * * * **
24274417 CCAGCCAAAC-AGCCATACCAAAATTGATGGAATGC-AAATTTA-A-GACATTTCTATATGTATT
188 CCAGCCAAACTA-TCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTT
* *
24274478 CAAATTGGGACGAAATGGACT-TGCATGTCAAA--C-A
252 CAAATTGGGACAAAATGGACTGT-CATGCCAAACTCTA
* *
24274512 GCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAATTGGGA
1 -CCCTGCCAAAATTTGATTGAATGTAAAATTAAG-AGGACATTTCTATAAGCATTCAAATT-GGA
* * * * * * * * * *
24274576 TGAAATGGTCTGTCATGCCAAACTACCCAACCAATCTG-TCCTGCCAAAATTTGATTGGATTCAA
63 CGAAATTGACTATAATGCCAAACTACCCAGCCAAACTGCT-CTACCAAAA-TTGATTGAATGCAA
* * * * *
24274640 AATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTAC-TGTCATGCCAAACTACG
126 AATTAAGAAGACATTTCTATAAG-AATCAAATTAGGACGAAATGGACGT-TCATGCCAAACTACC
24274704 CAGCCAAACTATC
189 CAGCCAAACTATC
24274717 CTATCGGGAG
Statistics
Matches: 7685, Mismatches: 1516, Indels: 1810
0.70 0.14 0.16
Matches are distributed among these distances:
248 4 0.00
249 39 0.01
250 2 0.00
251 13 0.00
253 2 0.00
256 1 0.00
257 8 0.00
258 19 0.00
259 13 0.00
260 17 0.00
261 16 0.00
262 44 0.01
263 16 0.00
264 20 0.00
265 17 0.00
266 12 0.00
267 5 0.00
268 4 0.00
269 11 0.00
270 4 0.00
271 8 0.00
272 82 0.01
273 58 0.01
274 142 0.02
275 161 0.02
276 101 0.01
277 180 0.02
278 95 0.01
279 19 0.00
280 16 0.00
281 26 0.00
282 12 0.00
283 24 0.00
284 18 0.00
285 35 0.00
286 448 0.06
287 501 0.07
288 675 0.09
289 1564 0.20
290 397 0.05
291 46 0.01
292 13 0.00
293 15 0.00
294 25 0.00
295 14 0.00
296 23 0.00
297 28 0.00
298 113 0.01
299 159 0.02
300 109 0.01
301 326 0.04
302 1024 0.13
303 453 0.06
304 41 0.01
305 18 0.00
306 8 0.00
307 3 0.00
308 5 0.00
309 8 0.00
310 11 0.00
311 24 0.00
312 20 0.00
313 4 0.00
314 17 0.00
315 163 0.02
316 1 0.00
318 5 0.00
322 1 0.00
323 19 0.00
324 16 0.00
325 10 0.00
326 52 0.01
327 2 0.00
328 22 0.00
329 7 0.00
330 2 0.00
338 1 0.00
339 48 0.01
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (288 bp):
CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGACGA
AATTGACTATAATGCCAAACTACCCAGCCAAACTGCTCTACCAAAATTGATTGAATGCAAAATTA
AGAAGACATTTCTATAAGAATCAAATTAGGACGAAATGGACGTTCATGCCAAACTACCCAGCCAA
ACTATCATGCCAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCGTTCAAATTGGG
ACAAAATGGACTGTCATGCCAAACTCTA
Found at i:24265981 original size:13 final size:14
Alignment explanation
Indices: 24265949--24265985 Score: 51
Period size: 13 Copynumber: 2.8 Consensus size: 14
24265939 AATGGACGGT
*
24265949 CATGCCAAACTACC
1 CATGCCAAAATACC
24265963 CA-GCCAAAATA-C
1 CATGCCAAAATACC
24265975 CATGCCAAAAT
1 CATGCCAAAAT
24265986 TGATTGAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
12 3 0.14
13 16 0.76
14 2 0.10
ACGTcount: A:0.43, C:0.35, G:0.08, T:0.14
Consensus pattern (14 bp):
CATGCCAAAATACC
Found at i:24266861 original size:101 final size:102
Alignment explanation
Indices: 24266264--24267139 Score: 711
Period size: 101 Copynumber: 8.8 Consensus size: 102
24266254 TAACTACTGA
* * * *
24266264 GCCAAAATTTGATTGCATGCATAATTAAGAGGACATTTCTATAA-TAGTTCAAATTGGGACGAAG
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAA-
* * * * *** *
24266328 A-GGACAGTCATGCAAAAAT-ACCCAACCAAATTTCCTT
64 ATGGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * * * * *
24266365 GCCAAAATTTG-TTTAATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGA
1 GCCAATATTTGATTGAA-TGCAAAATT-AAGAGGACATTTCTATA-AGCATTCAAATTGGGACGA
* **
24266427 AATGGACTGTCATGCAAAAC-AACCCAGCCAAACTTCCCT
63 AATGGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * * *
24266466 GCCAA-AATTGATTGAATGCAAAACTAAGAGGACATTTCTGTAAACATTCAAATTGGTACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
* * * **
24266530 -TAATAGTCATGCCAAAC-AACCCAACCAAATTGCCCT
66 GGACT-GTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * *
24266566 GCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
** * **
24266631 AAACTGTCATGCCAAAC-AACCCAACCAAATTGCCCT
66 GGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * *
24266667 GCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
**
24266732 AAACTGTCATGCCAAAC-AACCCAGCCAAACAGCCCT
66 GGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * *
24266768 TCCAATATTTGCTTGAATGAAAAATTAAGTA-GTCATTTCTATAAGCATT-ATAATTGGGACGAA
1 GCCAATATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA-AATTGGGACGAA
*** *
24266831 ATGGACTGTCATGCCAAACTGTTCTA-CCAAA-A----T
64 ATGGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * *
24266864 -----TA----AATGAACGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGTACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
*** * * * ** *
24266920 GGAAAATCATACCAAACT-ACTCAGCTAAATTGTCCT
66 GGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * * *
24266956 GCCAATATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTAGGACGAAAT
1 GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
**
24267021 AAACTGTCATGCCAAAC-AACCCAGCCAAACAGCCCT
66 GGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
* * * *
24267057 TCCAATATTTGCTTGAATGAAAAATTAAGTA-GTCATTTCTAATAAGCATT-ATAATTGGGACGA
1 GCCAATATTTGATTGAATGCAAAATTAAG-AGGACATTTCT-ATAAGCATTCA-AATTGGGACGA
24267120 AATGGACTGTCATGCCAAAC
63 AATGGACTGTCATGCCAAAC
24267140 GTTCTACCAA
Statistics
Matches: 635, Mismatches: 105, Indels: 69
0.78 0.13 0.09
Matches are distributed among these distances:
86 2 0.00
87 61 0.10
88 1 0.00
91 2 0.00
92 1 0.00
96 1 0.00
97 2 0.00
99 3 0.00
100 79 0.12
101 439 0.69
102 44 0.07
ACGTcount: A:0.39, C:0.19, G:0.15, T:0.27
Consensus pattern (102 bp):
GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT
GGACTGTCATGCCAAACTAACCCAGCCAAACAGCCCT
Found at i:24267018 original size:188 final size:187
Alignment explanation
Indices: 24266685--24267037 Score: 435
Period size: 188 Copynumber: 1.9 Consensus size: 187
24266675 TTGATTGTAT
* * * * *
24266685 GCAAAATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACGAAATAAACTGTCATGCCAAACA
1 GCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAAC-ATCATACCAAACA
* * * *
24266750 ACCCAGCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGTAGTCATTTCTATAAGCA
65 ACCCAGCCAAACAGCCCTGCCAATATTTGATTGAATGAAAAATCAAGTAGACATTTCTATAAGCA
* **
24266815 TTATAATTGGGACGAAATGGACTGTCATGCCAAACTGTTCTACCAAAATTAAATGAAC
130 TTATAATTAGGACGAAATAAACTGTCATGCCAAACTGTTCTACCAAAATTAAATGAAC
24266873 GCAAAATTAAAAGGACATTTCTATAAGCATTCAAATT-GGTACGAAATGGAAA-ATCATACCAAA
1 GCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTAGG-ACGAAAT--AAACATCATACCAAA
* * * ** * * * *
24266936 CTACTCAGCTAAATTGTCCTGCCAATATTTGATTTAATGTAAAATCAAG-AGGACATTTCTATAG
63 CAACCCAGCCAAACAGCCCTGCCAATATTTGATTGAATGAAAAATCAAGTA-GACATTTCTATAA
24267000 GCATTCA-AATTAGGACGAAATAAACTGTCATGCCAAAC
127 GCATT-ATAATTAGGACGAAATAAACTGTCATGCCAAAC
24267038 AACCCAGCCA
Statistics
Matches: 139, Mismatches: 21, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
187 3 0.02
188 132 0.95
189 1 0.01
190 3 0.02
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (187 bp):
GCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACATCATACCAAACAA
CCCAGCCAAACAGCCCTGCCAATATTTGATTGAATGAAAAATCAAGTAGACATTTCTATAAGCAT
TATAATTAGGACGAAATAAACTGTCATGCCAAACTGTTCTACCAAAATTAAATGAAC
Found at i:24267280 original size:390 final size:387
Alignment explanation
Indices: 24264179--24268595 Score: 2157
Period size: 390 Copynumber: 11.3 Consensus size: 387
24264169 TAAGAGGAAT
* * * * *
24264179 CGAAATGGACAA-TCATGCAAAAATACCCAGCCAAATTTCCCTACCAAAATTTGATTGAATGCAA
1 CGAAATGGA-AAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAA
* * ** * **
24264243 AATTAAGAGGACATTTCTATAAGTAGTCAAATT-GAGACGAAATGGACTGTCAAGCCAAACTTCC
65 AATTAAGAGGACATTTCTATAAGCATTCAAATTAG-GACGAAATAAACTGTCATGCCAAACAACC
* * * * * * *
24264307 AAGCCAAACGGCCCTGCCAATATTTGATTGAATGAAAAATTAAGAAGTCATTTCTATAAGCATTG
129 CAGCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
* * * * *
24264372 AAATTTGGACGAAATGGACGGTCATGCCAAAC-TACCCAGCCAAACTACCCTGCCTTAATTTGAG
194 AAATTGGGACAAAATGAACTGTCATGCCAAACGT-CCTA-CCAAA--A-------TTAA----A-
* * * * * *
24264436 TAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGATGAAATGGAC-AGTCAT
243 TGAATGCAAAATTAAGAAGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAATGGACTA-TCAT
* * * * * * *
24264498 GCCAAACTACCCAGCCAAATTTCCCAGCCAAAATTTTATTGAATGCAAAATTAAGAGGACATTTC
305 ACCAAACTACTCAGCTAAATGT-CCTGCCAAAA-TTGATTGAATGCAAAATCAAGAGGACATTTC
* * * *
24264563 GATAAACTTTCAAATT-TTGA
368 TATAAGCATTCAAATTGGT-A
* ** * * * *
24264583 CGAAATGCACTGTCATGCCAAACTACCCAACCAACCTT-CTCTGCTGAA-A-TTGATTGAATGCA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAA-ATTGCCCTGC-CAATATTTGATTGAATGCA
* * * * * *
24264645 AAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGAACTGCCACGCCAAACTACC
64 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACC
* * * * * * *
24264710 TAGGCAAACTGCTC-GACCAATATTTTATTGAATGAAAAATTATGAGGACATTT-TAATAAACAT
129 CAGCCAAACAGCCCTG-CCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-ATAAACAT
* * * * * *
24264773 TCATATTAGGACGAAATGAACTGTCATGCCAAAC-TATCAAGCCAAACTACCCTGGGAATATTTG
192 TCAAATTGGGACAAAATGAACTGTCATGCCAAACGT-CCTA-CCAAA--A---T--TAA-A--TG
* * * * * *
24264837 ATTGATTGTAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGAAC--T-GTG
245 A---A-TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATA
* * *
24264899 CCAAACTA--C--CT---TG---T--CAAAATTTGATTGAATGTAAAATTAAGAGGACATTACTA
306 CCAAACTACTCAGCTAAATGTCCTGCCAAAA-TTGATTGAATGCAAAATCAAGAGGACATTTCTA
*
24264952 TAAACATTCAAATTGGTA
370 TAAGCATTCAAATTGGTA
** * * ** * *
24264970 CGAAATGGACTGTCATGCCAAACTACCTAGCCAAACTAACATGCC-ATAATTGATTGAATGCAAA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
* * * **
24265034 ATTACGAGAACATTTCTATAAGCATT-AAATTTGGGACGAAATGGACTGTCAT------------
66 ATTAAGAGGACATTTCTATAAGCATTCAAA-TTAGGACGAAATAAACTGTCATGCCAAACAACCC
* * * * * * * *
24265086 -GCCAAACTGCCCT-ACAAAATTTGATTGAATGCAAAATTAAGAGGATATTTCCATAAGCGTTTA
130 AGCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCA
* ** * * * * * * * * *
24265149 AATTAGGATGAAATAAACTATCATACCACAC-TACCCTGCCAAACTTGATTGAATGCTAAATTAA
195 AATTGGGACAAAATGAACTGTCATGCCAAACGT--CCTACCAAAATTAAATGAATGCAAAATTAA
* * * *
24265213 G-AGAACATTTCTATAAGCATTCAAATTGCGACGAAATAGACAATCA-AGCCAAACTACCCAG-T
258 GAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATA-CCAAACTACTCAGCT
* * * * * *
24265275 CAAACTGTCCTGCGAATATTTGATTGAATGCACAATTAAGAGGCCATTTCTATAAACATTCAAAT
321 -AAA-TGTCCTGCCAA-AATTGATTGAATGCAAAATCAAGAGGACATTTCTATAAGCATTCAAAT
*
24265340 TAAG-A
383 T-GGTA
* * * * * ** * *
24265345 CGAAATGG-ACGTTCATGCCAAAATAACAAGCCAAACTATCTTGTCAATATTTGATTGAATGCAA
1 CGAAATGGAAAG-TCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAA
* * * ** * *
24265409 AATTAAGAGGACATTTCT-TAAAGCGTTCAAATTTGGACAAAATGGACTTTTATG---------C
65 AATTAAGAGGACATTTCTAT-AAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACC
** * * *
24265464 CA---AATTA-CCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTATAGACATTC
129 CAGCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
* ** * *
24265525 AAATTGGTACGAAGTTGACTATAATGCCAAACTACCCA-GCCAAAC-TGCTCTACCAAAATTTAT
194 AAA-T--T--G--G--GAC-AAAATG---AACT-GTCATGCCAAACGT-C-CTACCAAAATTAAA
* * * * * * * *
24265588 TGAATGCAAAATTAAGAAGACATTTTTATAAGTAATAAAATTAGGACGAAATTGACTGTCATGCC
243 TGAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATACC
* * * * * *
24265653 AAACTACCCAGCCAAACT-TCACTGCCAAAATTTGATTAAATGCAAAATTAAGAAGACAATTCTA
308 AAACTACTCAGCTAAA-TGTC-CTGCCAAAA-TTGATTGAATGCAAAATCAAGAGGACATTTCTA
* * * *
24265717 TAATCGTTTAAATTGGGA
370 TAAGCATTCAAATTGGTA
* ** * ** * * * * * * *
24265735 CTAAATGGACTGTCATGACAAACTGTCTAACCAAACTT-TCCTACCAAAATTTGATTGAATTCGA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAA-TTGCCCTGCCAATATTTGATTGAATGCAA
* * * ** * *
24265799 ACTTACGAGGACATTTCTATAAACATTCAAATTAGGACGAAATTGACTGTCATGGCAAACTACCC
65 AATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCC
* ** * *
24265864 AACCAAACTA-CGGTGCCAA-AATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGA-ATT
130 AGCCAAAC-AGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATT
* * * *
24265926 CAAATTGGGACGAAATGGACGGTCATGCCAAAC-TACCCAGCCAAAATACCATGCCAAAATTGAT
193 CAAATTGGGACAAAATGAACTGTCATGCCAAACGT-CCTA-CCAAAAT----T-----AA---A-
* * ** *
24265990 TGAATGCAAAATTAAG-AGAACATTTCTATAAGAATTCAAATTGGGACAAAATGGACGGTCATGC
243 TGAATGCAAAATTAAGAAG-ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATAC
* * * * * *
24266054 CAAACTACCCAACCAAACTG-CCATGCTACAATTGATTGAATGCAAAATTAAGAGGACATTTCTA
307 CAAACTACTCAGCTAAA-TGTCC-TGCCAAAATTGATTGAATGCAAAATCAAGAGGACATTTCTA
24266118 TAAGCATTCAAATTGGTA
370 TAAGCATTCAAATTGGTA
* ** * * * * *
24266136 CGAAATTGACTGTCATACTAAACTGCCCAGCCAAATTGCCCTACCAA-AATTGATT-AATGCAAA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
* * * * * *
24266199 TTTTAGAGGGCATTTCTATAAGCATTTAAA-TAGG--GACA-AAA-TG-GATTG----AC-A--C
66 ATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCA-TGCCAAACAACCC
* *** * * * *
24266251 -GCCTAACTA-CTGAGCCAAAATTTGATTGCATGCATAATTAAGAGGACATTTCTATAATA-GTT
130 AGCCAAAC-AGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATT
* * * ** * *
24266313 CAAATTGGGACGAAGA-GGACAGTCATG-CAAAAATACCCAACCAAATTTCCTTGCCAAAATTTG
193 CAAATTGGGAC-AAAATGAACTGTCATGCCAAACGT--CCTACCAAA----ATT----AAA--TG
* * * * *
24266376 TTTAATTGC-AAATTAAAAATGACATTTCGATACA-CAATCAAATTGGGATGAAATGGACTGTCA
245 ---AA-TGCAAAATTAAGAA-GACATTTCTATA-AGCATTCAAATTGGGACGAAATGGACTATCA
* * * * *
24266439 TGCAAAACAACCCAGCCAAACT-TCCCTGCCAAAATTGATTGAATGCAAAA-CTAAGAGGACATT
304 TACCAAACTACTCAGCTAAA-TGT-CCTGCCAAAATTGATTGAATGCAAAATC-AAGAGGACATT
* *
24266502 TCTGTAAACATTCAAATTGGTA
366 TCTATAAGCATTCAAATTGGTA
* * * *
24266524 CGAAAT-TAATAGTCATGCCAAACAACCCAACCAAATTGCCCTGCCAATATTTGATTGTATGCAA
1 CGAAATGGAA-AGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAA
* *
24266588 AATTAAGAGGACATTTCTATAGGTATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCC
65 AATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCC
* ** * ***
24266653 AACCAAATTGCCCTGCCAATATTTGATTGTATGCAAAATTAAGAGGACATTTCTATAGGTATTCA
130 AGCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCA
* * * ** *
24266718 AATTAGGACGAAATAAACTGTCATGCCAAACAACCCAGCCAAACAGCCCTTCCAATATTTGCTTG
195 AATTGGGACAAAATGAACTGTCATGCCAAACGTCCTA-CCAAA-A----TT--AA-A------TG
* * * * *
24266783 AATGAAAAATTAAGTAGTCATTTCTATAAGCATT-ATAATTGGGACGAAATGGACTGTCATGCC-
245 AATGCAAAATTAAGAAGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGACTATCATACCA
* * * * * *
24266846 AA--ACT--G-----T-T-CTACCAAAATTAAATGAACGCAAAATTAAAAGGACATTTCTATAAG
309 AACTACTCAGCTAAATGTCCTGCCAAAATTGATTGAATGCAAAATCAAGAGGACATTTCTATAAG
24266900 CATTCAAATTGGTA
374 CATTCAAATTGGTA
* * * * * * *
24266914 CGAAATGGAAAATCATACCAAACTACTCAGCTAAATTGTCCTGCCAATATTTGATTTAATGTAAA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
* *
24266979 ATCAAGAGGACATTTCTATAGGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCA
66 ATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCA
* * * * *
24267044 GCCAAACAGCCCTTCCAATATTTGCTTGAATGAAAAATTAAGTA-GTCATTTCTAATAAGCATT-
131 GCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAG-AGGACATTTCT-ATAAACATTC
* * * *
24267107 ATAATTGGGACGAAATGGACTGTCATGCCAAACGTTCTACCAAAATTAAATGAACGCAAAATTAA
194 A-AATTGGGACAAAATGAACTGTCATGCCAAACGTCCTACCAAAATTAAATGAATGCAAAATTAA
* **
24267172 -AAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGAAAATCATACCAAACTACTCAGCTA
258 GAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATACCAAACTACTCAGCTA
* * * *
24267236 AATTGTCCTGCCAATATTTGATTTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTG
322 AA-TGTCCTGCCAA-AATTGATTGAATGCAAAATCAAGAGGACATTTCTATAAGCATTCAAATTG
*
24267301 GGA
385 GTA
** * ** *
24267304 CGAAATGGACTGTCATGCCAAACTACCTAGCCAAACAGCCCTGCCAATGTTTGATTGAATGCAAA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
*** * * ** * *
24267369 ATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAATGGATTGTCATGCCAAACTACCC
66 ATTAAGAGGACATTTCTATAAGCATTCA-AATTAGGACGAAATAAACTGTCATGCCAAACAACCC
* *
24267433 CGCCAAACTA-CCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
130 AGCCAAAC-AGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTC
* * * * * * * *
24267497 AAATTTGGACAAAATGAATTGTCGTGACAAACTTCCATGCCAAAATTGATTGAATGCAAAATTAA
194 AAATTGGGACAAAATGAACTGTCATGCCAAACGTCC-TACCAAAATTAAATGAATGCAAAATTAA
* * * * *
24267562 -AATGACATTTTTATAAGCACTAAAATTGGGACAAAATGGACTATCA-AGCCAAACTACCCAGCT
258 GAA-GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATA-CCAAACTACTCAGCT
* * * *
24267625 AAACTGCCCTGCCAATATTTTATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT
321 AAA-TGTCCTGCCAA-AATTGATTGAATGCAAAATCAAGAGGACATTTCTATAAGCATTCAAATT
*
24267690 GG-G
384 GGTA
* *** * *
24267693 CTGAAATGGAATGTCATGCCAAACTACCCAGCCAAACAACCTTGCTAGA-ATTTGATTGAATGCA
1 C-GAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCA-ATATTTGATTGAATGCA
* * ** *
24267757 AAATTAAGAGGATC-TTTCTATAAGCATTAAAATT-GGAACAAAATGGACTGTCATGCCAAACTA
64 AAATTAAGAGGA-CATTTCTATAAGCATTCAAATTAGG-ACGAAATAAACTGTCATGCCAAACAA
* * * * * * * ** *
24267820 TCCAGCCATACTGCCCTGCCAAAATTTCATTGAATTCAAAATTAAGAGAATTTTTTTATAAACAT
127 CCCAGCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACAT
* * * **
24267885 TCAAATTGGGACAAAATGGACTATCATGCCAAACTGTCCTGCCAAAATTTGATGGAATGCAAAAT
192 TCAAATTGGGACAAAATGAACTGTCATGCCAAAC-GTCCTACCAAAATTAAAT-GAATGCAAAAT
* * * **** *
24267950 TAAGAAGAGATTTCTATAAGCATTCAAATTAGGACGAAATGGACTATAATGTTGAACGAC-C--C
255 TAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATACCAAACTACTCAGC
* *
24268012 ---A------GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAAAT
320 TAAATGTCCTGCCAAAA-TTGATTGAATGCAAAATCAAGAGGACATTTCTATAAGCATTC-AAAT
24268068 TGGGT-
383 T-GGTA
* * ** * * ** * * * *
24268073 CAAAATGTACTGTAATGTCAAACTACCCAATCAAACTGCCCTGCCAAAATTAGATTGAATGTAAA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
* * * * * ** * * *
24268138 ATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAATTGACTATCATGCTAAACTACCCA
66 ATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCA
* *
24268202 GCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTC
131 GC-CAA--A-C-AGC----C---C-TGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTC
* * * * *
24268267 TATAAACATTAAAAATGGGACGAAATGTACAGTCACAGGAAACTACATAGCCAAATAG-CCATAC
183 TATAAACATTCAAATTGGGACAAAATG---A---AC-TG----T-CAT-GCCAAA-CGTCC-TAC
** * * *
24268331 CAAAATT-GGTGGAATTCAAAATT---AAGACATTTCTATATGTATTCAAATTGGGACGAAAT-G
233 CAAAATTAAAT-GAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * * *
24268391 -C-A-CAT-GC--A-T-GT-A---AAACTGCCCTGCCAAAATTTGATTGAAAGCAAAATTAAGTA
297 ACTATCATACCAAACTACTCAGCTAAA-TGTCCTGCCAAAA-TTGATTGAATGCAAAATCAAG-A
* * *
24268444 -GACATTTTTATAAGGATTCAAATTGGGA
359 GGACATTTCTATAAGCATTCAAATTGGTA
** * * * *
24268472 CGAAATGGACTGTCATGCCAAACTACCCAG-CAAATTTGTCCTACCAAAATTTGATT-AGATTCA
1 CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAA-TTGCCCTGCCAATATTTGATTGA-ATGCA
* ** *
24268535 AAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTATCATGCCAAAC
64 AAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAAC
24268596 TGCCCTATCG
Statistics
Matches: 3180, Mismatches: 581, Indels: 508
0.74 0.14 0.12
Matches are distributed among these distances:
358 1 0.00
359 43 0.01
360 1 0.00
361 1 0.00
362 8 0.00
363 3 0.00
364 1 0.00
365 1 0.00
366 1 0.00
368 1 0.00
370 2 0.00
373 71 0.02
374 12 0.00
375 83 0.03
376 115 0.04
377 53 0.02
378 96 0.03
379 65 0.02
380 4 0.00
381 2 0.00
382 2 0.00
383 5 0.00
384 4 0.00
385 4 0.00
386 29 0.01
387 223 0.07
388 158 0.05
389 83 0.03
390 991 0.31
391 172 0.05
392 8 0.00
393 11 0.00
394 7 0.00
395 6 0.00
396 7 0.00
397 4 0.00
398 16 0.01
399 99 0.03
400 146 0.05
401 87 0.03
402 139 0.04
403 341 0.11
404 67 0.02
405 4 0.00
407 3 0.00
ACGTcount: A:0.39, C:0.18, G:0.15, T:0.27
Consensus pattern (387 bp):
CGAAATGGAAAGTCATGCCAAACTACCCAGCCAAATTGCCCTGCCAATATTTGATTGAATGCAAA
ATTAAGAGGACATTTCTATAAGCATTCAAATTAGGACGAAATAAACTGTCATGCCAAACAACCCA
GCCAAACAGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
ATTGGGACAAAATGAACTGTCATGCCAAACGTCCTACCAAAATTAAATGAATGCAAAATTAAGAA
GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATACCAAACTACTCAGCTAAATG
TCCTGCCAAAATTGATTGAATGCAAAATCAAGAGGACATTTCTATAAGCATTCAAATTGGTA
Found at i:24267347 original size:101 final size:101
Alignment explanation
Indices: 24267157--24268596 Score: 1083
Period size: 101 Copynumber: 14.7 Consensus size: 101
24267147 CAAAATTAAA
* * * *** *
24267157 TGAACGCAAAATTAAAAGGACATTTCTATAAGCATTCAAATTGGTACGAAATGGAAAATCATACC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* * * *
24267222 AAACTA-CTCAGCTAAATTGTCCTGCCAATATTTGAT
66 AAACTACCT-AGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
24267258 TTAATGTAAAATCAAGAGGACATTTCTATAGGCATTCAAATTGGGACGAAATGGACTGTCATGCC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* **
24267323 AAACTACCTAGCCAAACAGCCCTGCCAATGTTTGAT
66 AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
*** * *
24267359 TGAATGCAAAATTAAGAACTCATTTCTATAAGCATT-ATACTTGGGACGAAATGGATTGTCATGC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGGGACGAAATGGACTGTCATGC
** * * *
24267423 CAAACTACCCCGCCAAACTACCTTGCCAATATTTGAT
65 CAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * * * *
24267460 TGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTTGGACAAAATGAATTGTCGTGAC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
24267525 AAACT---T--CC--A------TGCCAAAA-TTGAT
66 AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * * * * *
24267547 TGAATGCAAAATTAAAATGACATTTTTATAAGCACTAAAATTGGGACAAAATGGACTATCAAGCC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* * * *
24267612 AAACTACCCAGCTAAACTGCCCTGCCAATATTTTAT
66 AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
*
24267648 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-CTGAAATGGAATGTCATGC
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAC-GAAATGGACTGTCATGC
* ** * * *
24267712 CAAACTACCCAGCCAAACAACCTTGCTAGAATTTGAT
65 CAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * *
24267749 TGAATGCAAAATTAAGAGGATC-TTTCTATAAGCATTAAAATTGGAACAAAATGGACTGTCATGC
1 TGAATGCAAAATTAAGAGGA-CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* *
24267813 CAAACTATCC-AGCCATACTGCCCTGCCAAAATTTCAT
65 CAAACTA-CCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * ** * * *
24267850 TGAATTCAAAATTAAGAGAATTTTTTTATAAACATTCAAATTGGGACAAAATGGAC--T-AT---
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
*
24267909 ---C-A--T-GCCAAACTGTCCTGCCAAAATTTGAT
66 AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * *
24267938 GGAATGCAAAATTAAGAAGAGATTTCTATAAGCATTCAAATTAGGACGAAATGGAC--T-AT---
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* * *
24267997 -AA-T--GTTG---AAC-GACCCAGCCAAAATTTGAT
66 AAACTACCTAGCCAAACTG-CCCTGCCAAAATTTGAT
* * * * * *
24268026 TGAATGCAAAATTAAGAGGACATTTCTATAAGTATTCAAAATTGGGTCAAAATGTACTGTAATGT
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC-AAATTGGGACGAAATGGACTGTCATGC
* ** *
24268091 CAAACTACCCAATCAAACTGCCCTGCCAAAATTAGAT
65 CAAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * * * * * * *
24268128 TGAATGTAAAATTAA-AAGAAATTTCTATAAGCATTAAAATTGGGATGAAATTGACTATCATGCT
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
* *
24268192 AAACTACCCAGCAAAACTACCTAGCAAAACTTACTTGCCAAAATTTGAT
66 AAACTACCTAGC-CAA--A-CT-GC----C---C-TGCCAAAATTTGAT
* * * * * *
24268241 TGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAAAATGGGACGAAATGTACAGTCACAG-
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCA-TGC
* * * * *
24268305 GAAACTACATAGCCAAA-TAGCCATACCAAAA-TTGGT
65 CAAACTACCTAGCCAAACT-GCCCTGCCAAAATTTGAT
* * * * *
24268341 GGAATTCAAAATT-A-A-GACATTTCTATATGTATTCAAATTGGGACGAAAT-G-C--ACATG-C
1 TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
*
24268398 --A-T--GTA---AAACTGCCCTGCCAAAATTTGAT
66 AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
* * *
24268426 TGAAAGCAAAATTAAGTA-GACATTTTTATAAGGATTCAAATTGGGACGAAATGGACTGTCATGC
1 TGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
* * * *
24268490 CAAACTACCCAG-CAAATTTGTCCTACCAAAATTTGAT
65 CAAACTACCTAGCCAAA-CTGCCCTGCCAAAATTTGAT
* * *
24268527 T-AGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTATCATGC
1 TGA-ATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGC
24268591 CAAACT
65 CAAACT
24268597 GCCCTATCGG
Statistics
Matches: 1067, Mismatches: 193, Indels: 158
0.75 0.14 0.11
Matches are distributed among these distances:
84 13 0.01
85 15 0.01
86 1 0.00
87 65 0.06
88 162 0.15
89 17 0.02
90 3 0.00
91 3 0.00
92 9 0.01
93 3 0.00
94 2 0.00
95 2 0.00
96 5 0.00
97 30 0.03
98 4 0.00
99 2 0.00
100 58 0.05
101 544 0.51
102 39 0.04
103 2 0.00
104 2 0.00
105 3 0.00
109 5 0.00
111 1 0.00
112 1 0.00
113 29 0.03
114 46 0.04
115 1 0.00
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
TGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCC
AAACTACCTAGCCAAACTGCCCTGCCAAAATTTGAT
Found at i:24267588 original size:87 final size:88
Alignment explanation
Indices: 24267436--24267599 Score: 231
Period size: 87 Copynumber: 1.9 Consensus size: 88
24267426 ACTACCCCGC
* * * * *
24267436 CAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAAAT
1 CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAAAT
*
24267501 TTGGACAAAATGAATTGTCGTGA
66 TGGGACAAAATGAATTGTCGTGA
* * * *
24267524 CAAACTTCCATGCCAA-AATTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCACTAAAAT
1 CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAAAT
24267588 TGGGACAAAATG
66 TGGGACAAAATG
24267600 GACTATCAAG
Statistics
Matches: 66, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
87 52 0.79
88 14 0.21
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (88 bp):
CAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAAAT
TGGGACAAAATGAATTGTCGTGA
Found at i:24267615 original size:87 final size:88
Alignment explanation
Indices: 24267434--24267619 Score: 221
Period size: 87 Copynumber: 2.1 Consensus size: 88
24267424 AAACTACCCC
* * * * *
24267434 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTCAA
1 GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAA
* * * **
24267499 ATTTGGACAAAATGAATTGTCGT
66 ATTGGGACAAAATGAACTATCAA
* * * * *
24267522 GACAAACTTCCATGCCAA-AATTGATTGAATGCAAAATTAAAATGACATTTTTATAAGCACTAAA
1 GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAA
*
24267586 ATTGGGACAAAATGGACTATCAA
66 ATTGGGACAAAATGAACTATCAA
24267609 GCCAAACTACC
1 GCCAAACTACC
24267620 CAGCTAAACT
Statistics
Matches: 80, Mismatches: 18, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
87 65 0.81
88 15 0.19
ACGTcount: A:0.41, C:0.17, G:0.14, T:0.27
Consensus pattern (88 bp):
GCCAAACTACCATGCCAATAATTGATTGAATGCAAAATTAAAAGGACATTTCTATAAACACTAAA
ATTGGGACAAAATGAACTATCAA
Found at i:24267968 original size:88 final size:87
Alignment explanation
Indices: 24267816--24268079 Score: 291
Period size: 88 Copynumber: 3.0 Consensus size: 87
24267806 GTCATGCCAA
* * * *
24267816 ACTATCCA-GCCATACTGCCCTGCCAAAATTTCATTGAATTCAAAATTAAG-AGAATTTTTTTAT
1 ACTAT-CATGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGAA--TTTCTAT
*
24267879 AAACATTCAAATTGGGACAAAATGG
63 AAGCATTCAAATTGGGACAAAATGG
* *
24267904 ACTATCATGCCAAACTGTCCTGCCAAAATTTGATGGAATGCAAAATTAAGAAGAGATTTCTATAA
1 ACTATCATGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGA-ATTTCTATAA
* *
24267969 GCATTCAAATTAGGACGAAATGG
65 GCATTCAAATTGGGACAAAATGG
* *** * *
24267992 ACTATAATGTTGAAC-GACCCAGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
1 ACTATCATGCCAAACTG-CCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGA-ATTTCTATA
* *
24268056 AGTATTCAAAATTGGGTCAAAATG
64 AGCATTC-AAATTGGGACAAAATG
24268080 TACTGTAATG
Statistics
Matches: 149, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
87 3 0.02
88 129 0.87
89 16 0.11
90 1 0.01
ACGTcount: A:0.40, C:0.16, G:0.16, T:0.28
Consensus pattern (87 bp):
ACTATCATGCCAAACTGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGAAGAATTTCTATAAG
CATTCAAATTGGGACAAAATGG
Found at i:24268208 original size:13 final size:13
Alignment explanation
Indices: 24268192--24268222 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
24268182 CTATCATGCT
24268192 AAACTACCCAGCA
1 AAACTACCCAGCA
*
24268205 AAACTACCTAGCA
1 AAACTACCCAGCA
24268218 AAACT
1 AAACT
24268223 TACTTGCCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.48, C:0.32, G:0.06, T:0.13
Consensus pattern (13 bp):
AAACTACCCAGCA
Found at i:24268731 original size:137 final size:137
Alignment explanation
Indices: 24268474--24268733 Score: 373
Period size: 137 Copynumber: 1.9 Consensus size: 137
24268464 AATTGGGACG
* * * *
24268474 AAATGGACTGTCATGCCAAACTACCCAGCAAATTTGTCCTACCAAAATTTGATTAGATTCAAAAT
1 AAATGGACAGTCATGCCAAACTACCCAGCAAATCTGTCCTACCAAAATTGGATTAGATGCAAAAT
* * *
24268539 TAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTATCATGCCAAACTGCCCTAT
66 TAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACTGCCCTAT
24268604 CGGGAGA
131 CGGGAGA
* *
24268611 AAATGGACAGTCATGCCAAATTACCCAGCCAAA-CTG-CCTTGCCAAAATTGGATT-GAATGCAA
1 AAATGGACAGTCATGCCAAACTACCCAG-CAAATCTGTCC-TACCAAAATTGGATTAG-ATGCAA
* *
24268673 AATTAATAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATCCCAAACT
63 AATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACT
24268734 ACCTGGTCAA
Statistics
Matches: 109, Mismatches: 11, Indels: 6
0.87 0.09 0.05
Matches are distributed among these distances:
136 3 0.03
137 102 0.94
138 4 0.04
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (137 bp):
AAATGGACAGTCATGCCAAACTACCCAGCAAATCTGTCCTACCAAAATTGGATTAGATGCAAAAT
TAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTATCATCCCAAACTGCCCTAT
CGGGAGA
Found at i:24268825 original size:46 final size:46
Alignment explanation
Indices: 24268754--24268855 Score: 123
Period size: 46 Copynumber: 2.2 Consensus size: 46
24268744 ACTACCCTTC
* * * * * *
24268754 TAAAATTTGATTGAATTCAAGATTAATAGTACATTTCTATAAGCAT
1 TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
* *
24268800 TAAAATTTTATTTAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
1 TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
*
24268846 TCAAATTTGA
1 TAAAATTTGA
24268856 AAAAAAATGG
Statistics
Matches: 46, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (46 bp):
TAAAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGAAT
Found at i:24268926 original size:147 final size:147
Alignment explanation
Indices: 24268666--24268953 Score: 337
Period size: 147 Copynumber: 2.0 Consensus size: 147
24268656 AATTGGATTG
* * * ** **
24268666 AATGCAAAATTAATAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATCCCAA
1 AATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAATTGAAAAAAAATGGACTGTCATCCCAA
**** * * * * * *
24268731 ACTACCTGGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAATAGTACATTTCTATAA
66 ACTACCCAACCAAACTACCCTTCCAAAATTTGATTAAATGCAAAATTAAGAGAACATTTCTATAA
*
24268796 GCATTAAAATTTTATTT
131 GAATTAAAATTTTATTT
*
24268813 AATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAATTTGAAAAAAAATGGACTGTCATGCCA
1 AATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAA-TTGAAAAAAAATGGACTGTCATCCCA
** * *
24268878 AACTACCCAACCAAA-TTGCCTTGCCAAAA-TTGTTTAAATGCAAAATTAAGAGAACATTTTTAT
65 AACTACCCAACCAAACTACCCTT-CCAAAATTTGATTAAATGCAAAATTAAGAGAACATTTCTAT
24268941 AAGAATTAAAATT
129 AAGAATTAAAATT
24268954 GGGACAAAAT
Statistics
Matches: 116, Mismatches: 23, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
147 79 0.68
148 37 0.32
ACGTcount: A:0.43, C:0.15, G:0.11, T:0.31
Consensus pattern (147 bp):
AATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAATTGAAAAAAAATGGACTGTCATCCCAA
ACTACCCAACCAAACTACCCTTCCAAAATTTGATTAAATGCAAAATTAAGAGAACATTTCTATAA
GAATTAAAATTTTATTT
Found at i:24269016 original size:101 final size:101
Alignment explanation
Indices: 24268801--24269584 Score: 786
Period size: 100 Copynumber: 7.8 Consensus size: 101
24268791 TATAAGCATT
* * * * * ** *
24268801 AAAATTTTATTTAATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAATTTGAAAAAAAATGG
1 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATT-AAAATTGGGACAAAATGG
* * *
24268866 ACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCC
65 ACTGTCATGCCAAACTACCCAGCCAAACTGCCTTACC
*
24268903 AAAA-TTGTTTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGA
1 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGA
* * *
24268967 CTGTCACGCAAAACTACCCAGCCAAACTACCTTACC
66 CTGTCATGCCAAACTACCCAGCCAAACTGCCTTACC
* *
24269003 AAAATTTGATTAAATGCAAAATTAAGATG-ACATTTATATAAGAA-TACAAATTGGGACGAAATG
1 AAAATTTGATTAAATGCAAAATTAAGA-GAACATTTTTATAAGAATTA-AAATTGGGACAAAATG
* * * * *
24269066 GATTGTAATGCCAAACTACCCAACCAAATTGCC-CAGCC
64 GACTGTCATGCCAAACTACCCAGCCAAACTGCCTTA-CC
24269104 AAAA-TTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGA
1 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGA
* *
24269168 CTGTCATGCAAAACTACCCAGCCAAACTACCTTACC
66 CTGTCATGCCAAACTACCCAGCCAAACTGCCTTACC
* * * * *
24269204 AAAATTTGATTGAATGCAAAATTAAGAGGAA-ATTTATATAGGCA-TACAAATTGGGACGAAATG
1 AAAATTTGATTAAATGCAAAATTAAGA-GAACATTTTTATAAGAATTA-AAATTGGGACAAAATG
* * * **
24269267 AACTGTCATGCCAAGCTACCCAGCAAAACT-ATTCTACC
64 GACTGTCATGCCAAACTACCCAGCCAAACTGCCT-TACC
** ** * * * *
24269305 AAAATTT-ATTAAATGCAAAATTAAGAGTAA-ATTTCCATAATCATTCAAATTAGGAGAAAATAG
1 AAAATTTGATTAAATGCAAAATTAAGAG-AACATTTTTATAAGAATTAAAATTGGGACAAAATGG
* * *
24269368 ACTGTCGTGCCAAACTATCCAACCAAACTGCCTTACC
65 ACTGTCATGCCAAACTACCCAGCCAAACTGCCTTACC
* ** * * * *** *
24269405 AAAATTTGATTGAATGCAAAATTTGGAGGACATTTCTT-TAAGCATTTAAATTGGGATGGAATAG
1 AAAATTTGATTAAATGCAAAATTAAGAGAACATTT-TTATAAGAATTAAAATTGGGACAAAATGG
* * * *
24269469 ACTTTCATGCCAAACTACCCAGCAAAATTGGCC--AGC
65 ACTGTCATGCCAAACTACCCAGCCAAACT-GCCTTACC
* * * * * *
24269505 AAAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTAGGG-CGAAATGG
1 AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATT-GGGACAAAATGG
24269569 ACTGTCATGCCAAACT
65 ACTGTCATGCCAAACT
24269585 GTCTTGTCAA
Statistics
Matches: 571, Mismatches: 91, Indels: 42
0.81 0.13 0.06
Matches are distributed among these distances:
99 4 0.01
100 283 0.50
101 273 0.48
102 11 0.02
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (101 bp):
AAAATTTGATTAAATGCAAAATTAAGAGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGA
CTGTCATGCCAAACTACCCAGCCAAACTGCCTTACC
Found at i:24269205 original size:201 final size:201
Alignment explanation
Indices: 24268801--24275711 Score: 1742
Period size: 201 Copynumber: 35.0 Consensus size: 201
24268791 TATAAGCATT
* * * * * ** **
24268801 AAAATTTTATTTAATGCAAAATTAAGAGAAAATTTCTATAAGAATTCAAATTTGAAAAAAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAA-TTGGGACGAAATGG
* ** *
24268866 ACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCAAAATTGTTTAAATGCAAAATTAAGAGA
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGA
*
24268931 ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCACGCAAAACTACCCAGCCAAACTA
130 ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTA
24268996 CCTTACC
195 CCTTACC
* * *
24269003 AAAATTTGATTAAATGCAAAATTAAGATGACATTTATATAAGAATACAAATTGGGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * *
24269068 TTGTAATGCCAAACTACCCAACCAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
24269133 CATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTAC
131 CATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTAC
24269198 CTTACC
196 CTTACC
* * *
24269204 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAGGCATACAAATTGGGACGAAATGAA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * *
24269269 CTGTCATGCCAAGCTACCCAGCAAAACTAT-TCTA-CCAAAATTTATTAAATGCAAAATTAAGAG
66 CTGTCATGCCAAACTACCCAACAAAA-T-TGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAG
** ** * * * * * * * *
24269332 TAA-ATTTCCATAATCATTCAAATTAGGAGAAAATAGACTGTCGTGCCAAACTATCCAACCAAAC
129 -AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
*
24269396 TGCCTTACC
193 TACCTTACC
** * * * * ** * * *
24269405 AAAATTTGATTGAATGCAAAATTTGGAGGACATTTCTTTAAGCATTTAAATTGGGATGGAATAGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * * *
24269470 CTTTCATGCCAAACTACCCAGCAAAATTGGCCAGCAAAAATTGATTGAATGCAAAATTAAGAGGA
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
* * * *
24269535 CATTTTTATAAGCATTCAAATTAGGG-CGAAATGGACTGTCATGCCAAACT-----G------T-
131 CATTTTTATAAGAATTAAAATT-GGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTA
**
24269587 -CTTGTC
195 CCTTACC
* * * * * * *
24269593 AAAATTGGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * * ** * * * *
24269658 CTGTCATCCCAAACTACCTAGTC-AAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAAGAG
66 CTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGAG
* * * * ** *** * *** * * * **
24269722 TACATTTCTATAAGCATTCAAATT-TAATTGAATGTAAAATTAAGAGAAAATTTCTA-TAAG-CA
129 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATG-CAAAA---CTACCCAGCCA
** * ** **
24269784 TTCAAATTTGAAAA
190 AACTACCTT--ACC
* * * * * ** * * *
24269798 AAAAATGGACTGTCATGCAAAACTACCCA-ACCAAATTGCCCTGCAAAAATTGATTGAATGCAAA
1 AAAATTTGATTG-AATGCAAAATTA---AGAGGAAATT----T----ATA-T-A-AGAATAC-AA
** * * * ** * **** * * *
24269862 ATTAAGA-G-AAT--ATTTTTATAAGAATTAAAAT-TGGGACAAAATGGACTGTCA-CGCAAAAC
50 ATTGGGACGAAATGGACTGTCAT--G--CCAAACTACCCAACAAAATTG-C--CCAGC-CAAAAT
*** ** ***
24269921 T-A-CCCA-GCCAAACCACCTTACCA-AA-ATTTGATTGAATGAAGAATTAAGAGAAAATTTCTA
107 TGATTAAATG-CAAA--A--TTAAGAGAACATTT--TT--AT-AAGAATT-----AAAATTGGGA
* * ** * * * ** * * *
24269981 TAAGCATTCAAATTTGA-AAAAAAATGGACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCC
157 CAA--AATGGACTGTCATGCAAAACT--AC--CCA-GCCAAACT----------A---CCTTACC
* *
24270045 AAAA-TTGAGTTGAATGCAAAATTAAGA-GAACAGTTT-TATAAGAATTA-AAATTGGAACAAAA
1 AAAATTTGA-TTGAATGCAAAATTAAGAGGAA-A-TTTATATAAGAA-TACAAATTGGGACGAAA
* * * * * * * * *
24270106 TGGATTGTCACGCAAAACTACCCAGCCAAACTACCTTA-CCAAAATTTGATTGAATGCAAAATTA
62 TGGACTGTCATGCCAAACTACCCAACAAAATTGCC-CAGCCAAAA-TTGATTAAATGCAAAATTA
** ** * * * ** * *
24270170 AGAGTAA-ATTTCCATAATCATTCAAATTGGGAGAAAATGGACTATTGTGCCAAACTACCCAGCA
125 AGAG-AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCC
*
24270234 AAACTA-TTCTACC
189 AAACTACCT-TACC
* ** ** * **
24270247 AAAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGG-ACGAAATGG
* * * * * * *
24270311 ACTGTCGTGCCAAACTATCCAACCAAACTACCTTA-CCAAAATTTGATTGAATGCAAAATTTGAA
65 ACTGTCATGCCAAACTACCCAACAAAATTGCC-CAGCCAAAA-TTGATTAAATGCAAAA-TT-AA
* * *** * * * *
24270375 G-G-ACATTTCTT-TAAGCATTTAAATTGGGATGGAATAGACTATCATGCCAAACTACCCAGCAA
126 GAGAACATTT-TTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCA
* * *
24270437 AATTGGCC-TGCC
190 AACT-ACCTTACC
* * * * *
24270449 AAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGG-CGAAATAG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATT-GGGACGAAATGG
24270512 ACTGTCATG-C---C-A---AAC-----TGCCCAGCCAAAATTTGA-TAGAATGCAAAATTAAGA
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTA-AATGCAAAATTAAGA
* * * * * *
24270563 GGACATTTCTATAAGCATTCAAATTGGGGCGAAATGGACTG---T-C---A-T-----GCCAAAC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* *
24270615 TGCCTTGCC
193 TACCTTACC
* * * * * * * *
24270624 AAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATAGGCACT-CCAATTGGGACAAAACGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAG-AATACAAATTGGGACGAAATGG
* * * ** * * *
24270688 ATTGTCATGCCAAACTACCCAACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAA-TAAGA
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAG-CCAAAATTGATTAAATGCAA-AATTAAGA
* * * * ** * * * * * *
24270752 GGACATTTCTATAAGCATTCAAATTGGGATGAAATAGACGGTCACGCCAAACTACCCTGCCAAAT
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* * * *
24270817 TGCCATGCT
193 TACCTTACC
* * * * * * *
24270826 AAAA-TTGATTGAATGCTAAATTAATAAGACATTTCTATAAGCATTCAAATTGGGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * * * * * * * * * *
24270890 CTGTTATGCAAAACTACCCAGCCAAACTACCCTGGCAAAATTGATTGAACGCCAAATTTAGAGGA
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
* * * * * ** * * * *
24270955 CAATTCTAAAAGCATTCAAATTGGGATGAAATGGATTGTCATGCCAAACTATCCAGCCAAATTAC
131 CATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTAC
24271020 CTAGCTAAACTGCCCAAAC
196 CT---T--A-----C---C
* * * * * * *
24271039 AAAATTTGATGGAATGAAAAATTAAGATGG-CATTTAAATAA-ATATTCAAATTGGGACAAAATA
1 AAAATTTGATTGAATGCAAAATTAAGA-GGAAATTTATATAAGA-ATACAAATTGGGACGAAATG
* * * * * ** ** * *
24271102 GACAGTCATGCAAAAATGCCCAGCAAAATTTTCTTGCCAAAATTTGATTGAATGCAAAACTAAGA
64 GACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGA
* ** * * * * *
24271167 GGACATTTCGATAA-ACA-TACAAATTGGAACGAAATGGACTGTCATGTAAAACTATCTAGCCAA
128 GAACATTTTTATAAGA-ATTA-AAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAA
* *
24271230 AC-ATCCCTGCC
191 ACTA-CCTTACC
* * * * * * * * * *
24271241 AAAA-TTGACTAAATGCAAAATTAATAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * *
24271305 CTTTCATGTCAAACTACCCAGCAATATT----AG-----A---ATT-AATGCAAAATTAAGAGGA
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
* * * * * * * * *
24271357 CA-TTCTATAAGTAGTT-AAATTGAGACGAAATGGACTATCAAGCAAAACTTCCAAGCAAAAC-A
131 CATTTTTATAAG-AATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTA
* *
24271419 GCCCTGCC
195 -CCTTACC
* * ** * * ** *
24271427 AATATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
** * * * *
24271492 CTGTCATGCCAAACTA-CC--C-----TG--C--CTTAATTTGAGTAAATGAAAAATTAATATG-
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGA-GA
* * * * * * * *
24271544 ACATTTCTGTAAGAGTTCAAATAT-GGA-AGAAATGGACAGTCATTCCAAACT-CCCAGCCAAAT
130 ACATTTTTATAAGAATTAAAAT-TGGGACA-AAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* *
24271606 TTCC-CAGCC
193 TACCTTA-CC
* * ** *
24271615 AAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAA-ACATACAAATTGGAACGAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGA-ATACAAATTGGGACGAAATGG
* * * * * ** * * * *
24271679 ACTATCATGCAAAACTATCTAGCTAACCTT-CTCTA-TCGAAATTGATTGAATGCAAAATTAAGA
65 ACTGTCATGCCAAACTACCCAAC-AAAATTGC-CCAGCCAAAATTGATTAAATGCAAAATTAAGA
* * * * * *
24271742 GAACGTTTCTATAAGCATTTAAATTGGGACTAAATGAACTGTCATGC--AA-T----------AC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* *
24271794 TACCCTGCC
193 TACCTTACC
* * * ** * *
24271803 AAAA-TTGATTGAATGCTAAATTAAGA-GAACATTT-TATAAGCATTCAAATTACGAGGAAATAG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAA-ATTTATATAAGAATACAAATTGGGACGAAATGG
* * * * ** * *
24271865 ACAGTCATGCCAAACTACCCAGCCAAATTGTCCTA-CCAATGTTTGATTGAATGCACAATTAAGA
65 ACTGTCATGCCAAACTACCCAACAAAATTG-CCCAGCCAA-AATTGATTAAATGCAAAATTAAGA
* * * * * * * *
24271929 GGACATTTCTATAAAAATTCAAATTGCGACGAAATGGACTGTCATGCCAAAA-TAACAAGCCAAA
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATG-CAAAACTACCCAGCCAAA
*
24271993 CTACCTTGCC
192 CTACCTTACC
* * * * * *
24272003 AATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAAATT-GGACAAAATG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATAT-AAGAATAC-AAATTGGGACGAAATG
* * * * * *
24272066 GACTTTTATGCCAAACT-GCC--C-----TG-CCA---AAATTTGATTGAATGTAAAATTAAGAG
64 GACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAG
* * * * * * *
24272119 GACATTTCTAT-AGACATTCAAATTGGTACAAAATGGACTGTAATGCCAAACTACCCGGCCAAAC
129 AACATTTTTATAAGA-ATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
*
24272183 T-GCTATACC
193 TACCT-TACC
24272192 AAAA-TTGATTGAATGCAAAATTAAGAGGAAAATTT-TATAAGTAATA-AAATTGGGACGAAATG
1 AAAATTTGATTGAATGCAAAATTAAGAGG-AAATTTATATAAG-AATACAAATTGGGACGAAATG
* * ** ** *
24272254 GACTGTCATGCCAAACTACCCAGCCAAACTT-TACTTCCAAAATTTGATTGAATGCAAAATTAAG
64 GACTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAG
* * ** ** * * * * * **
24272318 AGGAA-ATTTCTATAAGCATTTTAATTGGGATGAAATGGACTATCATGCCAAACTGCCTAACTGA
127 A-GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAA
* *
24272382 ACT-CTCCTGCC
191 ACTAC-CTTACC
* * * * * * * **
24272393 AAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAA-ACATTCAAATTGGGACGAAATTA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGA-ATACAAATTGGGACGAAATGG
* * * * * * *
24272457 ATTGTCATGGCAAACTACCCAACCAAACT-ACCATGCCAAAATAGATTGAATGCAAAATTAAGAG
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCA-GCCAAAATTGATTAAATGCAAAATTAAGAG
* * * * * * * * *
24272521 GACATTTCTACAAGAATTCAAATTGGGACGAAATGAACGGTCATGCCAAACTACCCAACCAAACT
129 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACT
* * *
24272586 -GCTATGCT
194 ACCT-TACC
* * * * * * *
24272594 ACAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTATGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* ** * * *
24272658 CTG-CAATGCTAAACTACCCGGCCAAATTGCCCTA-CCAAAATTGATT-AATGCAAATTTTAGAG
66 CTGTC-ATGCCAAACTACCCAACAAAATTGCCC-AGCCAAAATTGATTAAATGCAAAATTAAGAG
* * * * * * *
24272720 GACATTTCTATAAGCATTTAAATAGGGACGAAATGGA----C-TGC----C-A--C-GCCTAACT
129 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACT
*
24272772 ACC-GAGCC
194 ACCTTA-CC
* * * * * * * *
24272780 AAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAATAGTTCAAATTGTGACGAAGA-GG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAA-ATGG
* * * * * ** *
24272844 ACAGTCATGCAAAAATACCCAACCAAATTTCCTTGCCAAAATTTGATTAATTGC-AAATTAA-A-
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGAG
* * * **
24272906 AATGATATTTTGATACA-CATTCAAATTGGGATGAAATGGACTGTCATGCAAAACTACCCAGCCA
129 AA-CAT-TTTT-ATA-AGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCA
* * *
24272970 AACTTCCCTGCC
190 AACTACCTTACC
* * * * * **
24272982 AAAA-TTGATTGAATGCAAAATTAAGAAGACATTTCTATAA-ACATTCAAATTGGTACGAAATTA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGA-ATACAAATTGGGACGAAATGG
* * * * * **
24273045 ACAGTCATGCCAAACTACCCAGCTAAATTGCCCAGCCAATATTTAATTGTATGCAAAATTAAGAG
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAA-AATTGATTAAATGCAAAATTAAGA-
* * ** * * * *
24273110 GAA-ATTTCTATAGGCGTTCAAATTAGGACAAAATGGACTGTCAGGCCAAACTACCCAGCCAAAC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
24273174 -AGCCCTT-CC
193 TA--CCTTACC
* ** * ** * * * *
24273183 AATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGCATTA-TAATTGGGATGAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAG-AATACAAATTGGGACGAAATGG
* * * *
24273247 AC-GCTCATG-C---C-A---AAC-----TGCCCTGCCAAAATTGATTGAACGCAAATTTAAGAG
65 ACTG-TCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAG
* * * * * * ** * *
24273298 GACATTTCTATAAGCATTCAAATTGGTACGAAATGGACAATCATACCAAACTACCCAGCCAAACT
129 AACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACT
* * *
24273363 GCCCTGCC
194 ACCTTACC
* * * * * * * *
24273371 AATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATTGCGACGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
** * * ** * **
24273436 CTGTCATGCCAAACTA-TTAGCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGA-A
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAA-AATTGATTAAATGCAAAATTAAGAGA
* * * * * * * * *
24273499 GCTATTTCTATAAGCATTATACTTGGGACGAAATAGACTGTCATACCAAACTACCCAGCCAAACT
130 AC-ATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACT
*
24273564 ACC-CAGCC
194 ACCTTA-CC
* ** * * * * * *
24273572 AATATTTGATTGAATGCAAAATTAAGAGGACCTTTCTATAA-ATATTCTAATTTGTACAAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGA-ATACAAATTGGGACGAAATGG
* * * *
24273636 A-T-TC-T--C--A-T---GAA-AAACTT--CCATGCCAAAATTGATTGAATG-AAAATTAAAAT
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCA-GCCAAAATTGATTAAATGCAAAATTAAGA-
* * * ** * * **
24273686 G-GCATTTTTATAAGCATTAAAATTGGGACGAAATTTACTGTCAAGCCAAACCCCCCAGCCAAAC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* *
24273750 TGCCCTACC
193 TACCTTACC
* * * * * * *
24273759 AATATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * *** * * * * *
24273824 CTGTCATGCCAAACTACCCAGCCAAACAACCCTGCCAGTATTTGATTGAATGCAAAATTAAGAGG
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCA-AAATTGATTAAATGCAAAATTAAGAGA
* * * * * * *
24273889 ATATTTCTATAAGCATTCAAATTGAGACAAAATGGACTGTCATGGC-AAGCTACCCAGCCATACT
130 ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCAT-GCAAAACTACCCAGCCAAACT
* *
24273953 GCCTTGCC
194 ACCTTACC
* * * *
24273961 AAAATTTGATTGAATTCAAAATTAAGA-GAATATTTTTTATAAACAAT-CAAATTGGGAC-AAAC
1 AAAATTTGATTGAATGCAAAATTAAGAGGAA-A-TTTATAT-AAGAATACAAATTGGGACGAAAT
* * * ** *
24274023 GGACTGTTATGCCAAACT-GCC--C----TT--CCA---AAATTTGATGGAATGCAAGATTAAGA
63 GGACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGA
* * * ** * * * ***
24274076 -AGTCATTTCTATAAGCATCCAAATTAGGACGAAATGGACTATCATGTTGAACTACCCAG-----
128 GA-ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAA
24274135 --------CC
192 CTACCTTACC
* * * * * * *
24274137 AAAATTTGATTGAATGCAAAAGT-A-A-GACATTTTTATAAGTATTCAAATTGGGTCGAAATGTA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* * * * * * *
24274199 CTGTAATGTCAAACTACCCAGTC-AAACTG-CCTGCCAAAATTAGATTGAATGTAAAATTAAGA-
66 CTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAATT-GATTAAATGCAAAATTAAGAG
* * ** * * * *
24274261 AGACATTTGTATAAGCATTAAAATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAAC
129 A-ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
*
24274326 TGA-CTTGCC
193 T-ACCTTACC
* *
24274335 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA-ACATTA-AAATTGGGACGAAATG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGA-A-TACAAATTGGGACGAAATG
* * ** * * ** * ** *
24274398 TACTGTCACGGGAAACTACCCAGCCAAACAG-CCATACCAAAATTGATGGAATGC-AAATTTA-A
64 GACTGTCATGCCAAACTACCCAACAAAATTGCCCA-GCCAAAATTGATTAAATGCAAAATTAAGA
* * * * *
24274460 G-ACATTTCTATATGTATTCAAATTGGGACGAAATGGACT-TGCATGTC--AA--A--CAG----
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGT-CATG-CAAAACTACCCAGCCAA
*
24274513 -C--CC-TGCC
191 ACTACCTTACC
* * * * *
24274520 AAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAATTGGGATGAAATGG
1 AAAATTTGATTGAATGCAAAATTAAG-AGGAAATTTATATAAGAATACAAATTGGGACGAAATGG
* * * * ** *
24274584 TCTGTCATGCCAAACTACCCAAC-CAATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGA
65 ACTGTCATGCCAAACTACCCAACAAAAT-TGCCCAGCCAAAA-TTGATTAAATGCAAAATTAAGA
* * * * * * * *
24274648 GGACATTTCTATAAGCATTCAAATTGGGACGAAATGTACTGTCATGCCAAACTACGCAGCCAAAC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
*
24274713 TATCC-TATCGGG
193 TA-CCTTA-C--C
* * * * ** *** **
24274725 AGAAAATGGACAAT-CATGTC-AAATTACCCA-ACCAAACTGCCT-T--G-CCA-AAATTGGTTG
1 A-AAATTTG--ATTGAATG-CAAAATTA---AGAGGAAA-TTTATATAAGAATACAAATTGG--G
* * * * ** * ** * * * *
24274782 AATGCAAAATTAAGA-GGACATTTC-TA-TAAGCATTC-AAATTG---AGACGAAATGGACTGT-
56 -A--CGAAA-T-GGACTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAATTGA-T-TA
* * * ** * ** * ** **
24274839 CATGCCAAACTACCTAGTCA-AAC-TGCCCTTCTAA-AATT-TGATT-GAACTCAAAATTAAAAG
113 AATGCAAAATTA---AG--AGAACAT--TTTTATAAGAATTAAAATTGGGA--CAAAATGGACTG
** * *
24274899 T-A-G----A-TTTCTA--TAAAC-A--TT---
169 TCATGCAAAACTACCCAGCCAAACTACCTTACC
* * * * * * *** **
24274917 TAAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTTAAAAAAAATGG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAA-TTGGGACGAAATGG
* ** * *
24274982 ACTGTCATGCCAAACTACCCAGCCAAAATT-CCCTTCCAAAATTGGATTGAATGCAAAATTAAAA
65 ACTGTCATGCCAAACTACCCA-ACAAAATTGCCCAGCCAAAATT-GATTAAATGCAAAATTAAGA
* * * * * * * * * * *
24275046 GGACATTTCTATAGGCATTCAAATTAGGACGAAATGAACTGTCTTGCCAAACTACCTAGCCAAAC
128 GAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAAC
* * *
24275111 TGCCCTATC
193 TACCTTACC
* * * * *
24275120 AAAA-TTGATTGAATGCAAAGTTAAGA-AAACATTTCTATAA-ACGTTA-AAATTGGGATGAAAT
1 AAAATTTGATTGAATGCAAAATTAAGAGGAA-ATTTATATAAGA--ATACAAATTGGGACGAAAT
* * * * * * *
24275181 AGACTGTCATTCCAAACTACCAAACTAAATTG-CGATGCCAAAATTGATTGAATGCAAAATTATG
63 GGACTGTCATGCCAAACTACCCAACAAAATTGCCCA-GCCAAAATTGATTAAATGCAAAATTAAG
* * ** * *
24275245 AGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACACTAAACTACCCAACCAAA
127 AGAACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAA
*
24275310 CTGCCTTACC
192 CTACCTTACC
* * *
24275320 AAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATACAAATTGGGACAAAATGGA
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
* *** * *
24275385 CTGTCATGCCAAACTACCCAACAAAACTATTCTGCCAAAATTGATTGAATGCAAAATTAAGAGGA
66 CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGA-GA
** * * * * * * *
24275450 A-ATTTCCATAAGCATTCAAATTGAGAGAAAATGGACTGTCATGCCAAACTATCCAACCAAACTA
130 ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTA
*
24275514 CCCTACC
195 CCTTACC
** * * * * * ** * *
24275521 AAAATTTGATTGAATGCAAAATTTGGAGGACACTTCTTTAAGCATTTAAATTGGGA-TAGAATAG
1 AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGA-AATGG
* * * * * * *
24275585 ACTATCATGCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTGATTGAATGCAAATTTAAGAGG
65 ACTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGA
* * * * * * * *
24275650 ACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCAGCCAAA
130 ACATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAA
24275712 ATTTGATTGA
Statistics
Matches: 5064, Mismatches: 1129, Indels: 1033
0.70 0.16 0.14
Matches are distributed among these distances:
171 4 0.00
172 17 0.00
173 19 0.00
174 8 0.00
175 18 0.00
176 76 0.02
177 3 0.00
179 1 0.00
180 3 0.00
181 4 0.00
184 13 0.00
185 152 0.03
186 129 0.03
187 412 0.08
188 515 0.10
189 389 0.08
190 43 0.01
191 7 0.00
192 27 0.01
193 15 0.00
194 16 0.00
195 9 0.00
196 4 0.00
197 15 0.00
198 67 0.01
199 63 0.01
200 363 0.07
201 1539 0.30
202 579 0.11
203 46 0.01
204 9 0.00
205 25 0.00
206 29 0.01
207 12 0.00
208 13 0.00
209 17 0.00
210 26 0.01
211 11 0.00
212 3 0.00
213 4 0.00
214 79 0.02
215 78 0.02
216 8 0.00
217 1 0.00
218 7 0.00
219 16 0.00
220 17 0.00
221 15 0.00
222 6 0.00
223 5 0.00
225 2 0.00
226 11 0.00
227 2 0.00
229 5 0.00
230 5 0.00
231 16 0.00
232 18 0.00
233 12 0.00
234 15 0.00
235 2 0.00
236 9 0.00
241 1 0.00
243 3 0.00
244 2 0.00
245 2 0.00
246 14 0.00
247 6 0.00
249 2 0.00
ACGTcount: A:0.40, C:0.18, G:0.15, T:0.27
Consensus pattern (201 bp):
AAAATTTGATTGAATGCAAAATTAAGAGGAAATTTATATAAGAATACAAATTGGGACGAAATGGA
CTGTCATGCCAAACTACCCAACAAAATTGCCCAGCCAAAATTGATTAAATGCAAAATTAAGAGAA
CATTTTTATAAGAATTAAAATTGGGACAAAATGGACTGTCATGCAAAACTACCCAGCCAAACTAC
CTTACC
Found at i:24269610 original size:88 final size:87
Alignment explanation
Indices: 24269506--24269672 Score: 273
Period size: 88 Copynumber: 1.9 Consensus size: 87
24269496 TTGGCCAGCA
* * *
24269506 AAAATTGATTGAATGCAAAATTAAGAGGACATTTTTATAAGCATTCAAATTAGGG-CGAAATGGA
1 AAAATTGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATT-GGGACAAAATGGA
*
24269570 CTGTCATGCCAAACTGTCTTGTC
65 CTGTCATCCCAAACTGTCTTGTC
24269593 AAAATTGGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
1 AAAATT-GATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGA
24269658 CTGTCATCCCAAACT
65 CTGTCATCCCAAACT
24269673 ACCTAGTCAA
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
87 9 0.12
88 65 0.88
ACGTcount: A:0.40, C:0.14, G:0.19, T:0.28
Consensus pattern (87 bp):
AAAATTGATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAATTGGGACAAAATGGAC
TGTCATCCCAAACTGTCTTGTC
Found at i:24269764 original size:46 final size:46
Alignment explanation
Indices: 24269695--24269792 Score: 144
Period size: 46 Copynumber: 2.1 Consensus size: 46
24269685 TACCCTTCTA
* * * *
24269695 AAATTTGATTGAATTCAAGATTAAGAGTACATTTCTATAAGCATTC
1 AAATTTAATTGAATTCAAAATTAAGAGAAAATTTCTATAAGCATTC
24269741 AAATTTAATTGAATGT-AAAATTAAGAGAAAATTTCTATAAGCATTC
1 AAATTTAATTGAAT-TCAAAATTAAGAGAAAATTTCTATAAGCATTC
24269787 AAATTT
1 AAATTT
24269793 GAAAAAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 2
0.89 0.08 0.04
Matches are distributed among these distances:
46 46 0.98
47 1 0.02
ACGTcount: A:0.44, C:0.08, G:0.11, T:0.37
Consensus pattern (46 bp):
AAATTTAATTGAATTCAAAATTAAGAGAAAATTTCTATAAGCATTC
Found at i:24269782 original size:147 final size:148
Alignment explanation
Indices: 24269601--24269893 Score: 356
Period size: 148 Copynumber: 2.0 Consensus size: 148
24269591 TCAAAATTGG
* * ** *
24269601 ATTGAATGCAAAAATAAGAGGACATTTCTATAAGCATTCAAA-TTG-GGACAAAATGGACTGTCA
1 ATTGAATGCAAAAATAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAATGGACTGTCA
* * ** * * * * *
24269664 TCCCAAACTACCTAGTCAAACTACCCTTCTAAAATTTGATTGAATTCAAGATTAAGAGTACATTT
66 TCCAAAACTACCCAACCAAACTACCCTGC-AAAAATTGATTGAATGCAAAATTAAGAGAACATTT
* *
24269729 CTATAAGCATTCAAATTTA
130 CTATAAGAATTAAAATTTA
* *
24269748 ATTGAATGTAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAATGGACTGTCA
1 ATTGAATGCAAAAATAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAATGGACTGTCA
* * * * *
24269813 TGCAAAACTACCCAACCAAATTGCCCTGCAAAAATTGATTGAATGCAAAATTAAGAGAATATTTT
66 TCCAAAACTACCCAACCAAACTACCCTGCAAAAATTGATTGAATGCAAAATTAAGAGAACATTTC
24269878 TATAAGAATTAAAATT
131 TATAAGAATTAAAATT
24269894 GGGACAAAAT
Statistics
Matches: 121, Mismatches: 23, Indels: 3
0.82 0.16 0.02
Matches are distributed among these distances:
147 38 0.31
148 47 0.39
149 36 0.30
ACGTcount: A:0.44, C:0.14, G:0.13, T:0.29
Consensus pattern (148 bp):
ATTGAATGCAAAAATAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAATGGACTGTCA
TCCAAAACTACCCAACCAAACTACCCTGCAAAAATTGATTGAATGCAAAATTAAGAGAACATTTC
TATAAGAATTAAAATTTA
Found at i:24269994 original size:101 final size:101
Alignment explanation
Indices: 24269741--24270538 Score: 819
Period size: 101 Copynumber: 7.9 Consensus size: 101
24269731 ATAAGCATTC
* * **
24269741 AAATTTAATTGAATGTAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAAATGG
1 AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAA-TTG-GGAAAAAATGG
* * * * * *
24269806 ACTGTCATGCAAAACTACCCAACCAAATTGCCCT-GCA
64 ACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * * * * *
24269843 AAAATTGATTGAATGCAAAATTAAGAGAATATTTTTATAAGAATTAAAATTGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGGGAAAAAATGGAC
* * *
24269908 TGTCACGCAAAACTACCCAGCCAAACCACCTTACCA
66 TGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
**
24269944 AAATTTGATTGAATG-AAGAATTAAGAGAAAATTTCTATAAGCATTCAAATTTGAAAAAAAATGG
1 AAATTTGATTGAATGCAA-AATTAAGAGAAAATTTCTATAAGCATTCAAA-TTGGGAAAAAATGG
* * * *
24270008 ACTGTCATGCCAAACTACCCAACCAAATTGCCTTGCCA
64 ACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * *
24270046 AAA-TTGAGTTGAATGCAAAATTAAGAGAACAGTTT-TATAAGAATTAAAATT-GGAACAAAATG
1 AAATTTGA-TTGAATGCAAAATTAAGAGAA-AATTTCTATAAGCATTCAAATTGGGAA-AAAATG
* * *
24270108 GATTGTCACGCAAAACTACCCAGCCAAACTACCTTACCA
63 GACTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * * *
24270147 AAATTTGATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAGAAAATGGAC
1 AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGGGAAAAAATGGAC
* ** * *
24270212 TATTGTGCCAAACTACCCAGCAAAACTA-TTCTACCA
66 TGTCATGCCAAACTACCCAGCCAAACTACCT-TACCA
* * *
24270248 AAATTT-ATTGAATGCAAAATTAAGAGTAAATTTCCATAATCATTCAAATTGGGAAAAAAATGGA
1 AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGGG-AAAAAATGGA
* * *
24270312 CTGTCGTGCCAAACTATCCAACCAAACTACCTTACCA
65 CTGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
* * * *** *
24270349 AAATTTGATTGAATGCAAAATTTGAAG-G-ACATTTCTTTAAGCATTTAAATTGGGATGGAATAG
1 AAATTTGATTGAATGCAAAA-TT-AAGAGAAAATTTCTATAAGCATTCAAATTGGGAAAAAATGG
* * * * *
24270412 ACTATCATGCCAAACTACCCAGCAAAATTGGCC-TGCCA
64 ACTGTCATGCCAAACTACCCAGCCAAACT-ACCTTACCA
* * ** *
24270450 AAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGG-CGAAATAGA
1 AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATT-GGGAAAAAATGGA
*
24270513 CTGTCATGCCAAACTGCCCAGCCAAA
65 CTGTCATGCCAAACTACCCAGCCAAA
24270539 ATTTGATAGA
Statistics
Matches: 586, Mismatches: 90, Indels: 42
0.82 0.13 0.06
Matches are distributed among these distances:
98 3 0.01
99 3 0.01
100 159 0.27
101 248 0.42
102 161 0.27
103 9 0.02
104 3 0.01
ACGTcount: A:0.42, C:0.17, G:0.14, T:0.26
Consensus pattern (101 bp):
AAATTTGATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGGGAAAAAATGGAC
TGTCATGCCAAACTACCCAGCCAAACTACCTTACCA
Found at i:24270551 original size:88 final size:87
Alignment explanation
Indices: 24270446--24270714 Score: 387
Period size: 88 Copynumber: 3.1 Consensus size: 87
24270436 AAATTGGCCT
24270446 GCCAAAA-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTAGGGCGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGGCGAAAT
*
24270510 AGACTGTCATGCCAAACTGCCCA
65 GGACTGTCATGCCAAACTGCCCA
*
24270533 GCCAAAATTTGATAGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATT-GGGCGAAAT
**
24270598 GGACTGTCATGCCAAACTGCCTT
65 GGACTGTCATGCCAAACTGCCCA
* * * * * *
24270621 GCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATAGGCACTCCAATTGGGACAAAAC
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGG-CGAAAT
* *
24270686 GGATTGTCATGCCAAACTACCCA
65 GGACTGTCATGCCAAACTGCCCA
*
24270709 ACCAAA
1 GCCAAA
24270715 CTGCCTTGCC
Statistics
Matches: 163, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
87 10 0.06
88 153 0.94
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (87 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGCGAAATG
GACTGTCATGCCAAACTGCCCA
Found at i:24270801 original size:101 final size:99
Alignment explanation
Indices: 24270608--24271326 Score: 487
Period size: 100 Copynumber: 7.0 Consensus size: 99
24270598 GGACTGTCAT
* * *
24270608 GCCAAACTGCCTTGCCAAAATTGGATTGAATGCAAAATTAAGAGGACATTTCTATAGGCACTCCA
1 GCCAAACTGCCTTGCCAAAATT-GATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * *
24270673 ATTGGGACAAAACGGATTGTCATGCCAAACTACCCA
64 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * *
24270709 ACCAAACTGCCTTGCCCAAATTTTATTGAATGCAACAATAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCTTG-CCAAAATTGATTGAATGCAA-AATAAGAGGACATTTCTATAAGCATTCAA
* * * * *
24270774 ATTGGGATGAAATAGACGGTCACGCCAAACTACCCT
64 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * *
24270810 GCCAAATTGCCATGCTAAAATTGATTGAATGCTAAATTAATAAGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCCTTGCCAAAATTGATTGAATGC-AAAATAAGAGGACATTTCTATAAGCATTCAAA
* *
24270875 TTGGGACGAAATGGACTGTTATGCAAAACTACCCA
65 TTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * * * * *
24270910 GCCAAACTACCCTGGCAAAATTGATTGAACGCCAAATTTAGAGGACAATTCTAAAAGCATTCAAA
1 GCCAAACTGCCTTGCCAAAATTGATTGAATG-CAAAATAAGAGGACATTTCTATAAGCATTCAAA
* * *
24270975 TTGGGATGAAATGGATTGTCATGCCAAACTATCCA
65 TTGGGACGAAATGGACTGTCATGCCAAACTACCCA
** * ** * **
24271010 GCCAAATTACCTAG-CTAAACTGCCCAAACA-AAATTTG-ATGGAATGAA-AA-ATTAAGATGGC
1 GCC-AA--A-CT-GCCT----TG-CCAAA-ATTGA-TTGAATGCAA--AATAAGA-GGACATTTC
* ** * * * * * *
24271070 ATTTAAATAAATATTCAAATTGGGACAAAATAGACAGTCATGCAAAAATGCCCA
51 -TATAAGC----ATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * ** * * *
24271124 GCAAAATTTTCTTGCCAAAATTTGATTGAATGCAAAACTAAGAGGACATTTCGATAAACATACAA
1 GCCAAACTGCCTTGCCAAAA-TTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* ** * *
24271189 ATTGGAACGAAATGGACTGTCATGTAAAACTATCTA
64 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
* * * * *
24271225 GCCAAACAT-CCCTGCCAAAATTGACTAAATGCAAAATTAATAGGACATCTCTATAAGCATTCAA
1 GCCAAAC-TGCCTTGCCAAAATTGATTGAATGCAAAA-TAAGAGGACATTTCTATAAGCATTCAA
* * * *
24271289 ATTGGTACAAAATGGACTTTCATGTCAAACTACCCA
64 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
24271325 GC
1 GC
24271327 AATATTAGAA
Statistics
Matches: 470, Mismatches: 116, Indels: 65
0.72 0.18 0.10
Matches are distributed among these distances:
100 223 0.47
101 138 0.29
102 10 0.02
103 1 0.00
104 6 0.01
105 12 0.03
106 14 0.03
107 1 0.00
108 5 0.01
109 11 0.02
110 11 0.02
111 1 0.00
113 2 0.00
114 35 0.07
ACGTcount: A:0.39, C:0.20, G:0.16, T:0.25
Consensus pattern (99 bp):
GCCAAACTGCCTTGCCAAAATTGATTGAATGCAAAATAAGAGGACATTTCTATAAGCATTCAAAT
TGGGACGAAATGGACTGTCATGCCAAACTACCCA
Found at i:24271405 original size:86 final size:87
Alignment explanation
Indices: 24271252--24271414 Score: 208
Period size: 86 Copynumber: 1.9 Consensus size: 87
24271242 AAATTGACTA
* * *
24271252 AATGCAAAATTAATAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGACTTTCATGTCAA
1 AATGCAAAATTAAGAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGACTATCAAGTCAA
*
24271317 ACTACCCAGCAATATTAGAATT
66 ACTACCAAGCAATATTAGAATT
* *
24271339 AATGCAAAATTAAGAGGACAT-TCTATAAGTAGTT-AAATTGAG-ACGAAATGGACTATCAAG-C
1 AATGCAAAATTAAGAGGACATCTCTATAAGCA-TTCAAATTG-GTACAAAATGGACTATCAAGTC
*
24271400 AAAACTTCCAAGCAA
64 -AAACTACCAAGCAA
24271415 AACAGCCCTG
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
85 1 0.02
86 42 0.64
87 23 0.35
ACGTcount: A:0.44, C:0.16, G:0.15, T:0.26
Consensus pattern (87 bp):
AATGCAAAATTAAGAGGACATCTCTATAAGCATTCAAATTGGTACAAAATGGACTATCAAGTCAA
ACTACCAAGCAATATTAGAATT
Found at i:24271506 original size:101 final size:101
Alignment explanation
Indices: 24271326--24273273 Score: 1479
Period size: 101 Copynumber: 19.9 Consensus size: 101
24271316 AACTACCCAG
* * *
24271326 CAATATTAGAATT-AATGCAAAATTAAGAGGACA-TTCTATAAGTAGTT-AAATTGAGACGAAAT
1 CAATATTTG-ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAAAT
* * * * * * *
24271388 GGACTATCAAGCAAAACTTCCAAGCAAAACAGCCCTGC
64 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * *
24271426 CAATATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
24271491 ACTGTCATGCCAAACT----A-CC---CTG-CCT--
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * * * * *
24271516 -TA-ATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATAT-GGAAGAAAT
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAAT-TGGGACGAAAT
* * * * *
24271577 GGACAGTCATTCCAAACT-CCCAGCCAAATTTCCCAGC
64 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * * *
24271614 CAAAATTTTATTGAATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTGGAACGAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * * * * * * *
24271679 ACTATCATGCAAAACTATCTAGCTAACCTTCTCTATC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCT-GC
* * * * * *
24271716 GAA-A-TTGATTGAATGCAAAATTAAGAGAACGTTTCTATAAGCATTTAAATTGGGACTAAATGA
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
*
24271779 ACTGTCATG-C-AA-T----------ACTACCCTGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * ** * *
24271802 CAA-AATTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAAATAG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * *
24271865 ACAGTCATGCCAAACTACCCAGCCAAATTGTCCTAC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * ** *
24271901 CAATGTTTGATTGAATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTGCGACGAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * * *
24271966 ACTGTCATGCCAAAATAACAAGCCAAACTACCTTGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
*
24272002 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAAATT-GGACAAAAT
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT-AAGCATTC-AAATTGGGACGAAAT
*
24272065 GGACT-T--T-------TA---TGCCAAACTGCCCTGC
64 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * *
24272090 CAAAATTTGATTGAATGTAAAATTAAGAGGACATTTCTAT-AGACATTCAAATTGGTACAAAATG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAG-CATTCAAATTGGGACGAAATG
* * ** *
24272154 GACTGTAATGCCAAACTACCCGGCCAAACTGCTATAC
65 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * *
24272191 CAA-AATTGATTGAATGCAAAATTAAGAGGAAAATTT-TATAAGTAATAAAATTGGGACGAAATG
1 CAATATTTGATTGAATGCAAAATTAAGAGG-ACATTTCTATAAGCATTCAAATTGGGACGAAATG
*** *
24272254 GACTGTCATGCCAAACTACCCAGCCAAACTTTACTTC
65 GACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * ** *
24272291 CAAAATTTGATTGAATGCAAAATTAAGAGGAAATTTCTATAAGCATTTTAATTGGGATGAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * * **
24272356 ACTATCATGCCAAACTGCCTAACTGAACT-CTCCTGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGC-CCTGC
* * * * * * **
24272392 CAAAATTTGATTGAATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTA
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * * *
24272457 ATTGTCATGGCAAACTACCCAACCAAACTACCATGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * *
24272493 CAA-AATAGATTGAATGCAAAATTAAGAGGACATTTCTACAAGAATTCAAATTGGGACGAAATGA
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * **
24272557 ACGGTCATGCCAAACTACCCAACCAAACTGCTATGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * *
24272593 TACA-A-TTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTATGAAATG
1 CA-ATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATG
* * * *
24272656 GACTG-CAATGCTAAACTACCCGGCCAAATTGCCCTAC
65 GACTGTC-ATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * *
24272693 CAA-AATTGATT-AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACGAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * *
24272756 ACTGCCACGCCTAACTA-CC-G----A-------GC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * *
24272779 CAAAATTTGATTGCATGCAAAATTAAGATGACATTTCTATAA-TAGTTCAAATTGTGACGAAGA-
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCA-TTCAAATTGGGACGAA-AT
* * * * * * *
24272842 GGACAGTCATGCAAAAATACCCAACCAAATTTCCTTGC
64 GGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * *
24272880 CAAAATTTGATT-AATTGC-AAATTAAAAATGATATTT-TGATACA-CATTCAAATTGGGATGAA
1 CAATATTTGATTGAA-TGCAAAATT-AAGAGGACATTTCT-ATA-AGCATTCAAATTGGGACGAA
* *
24272941 ATGGACTGTCATGCAAAACTACCCAGCCAAACTTCCCTGC
62 ATGGACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * **
24272981 CAA-AATTGATTGAATGCAAAATTAAGAAGACATTTCTATAAACATTCAAATTGGTACGAAATTA
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * * *
24273045 ACAGTCATGCCAAACTACCCAGCTAAATTGCCCAGC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
* * * * * * *
24273081 CAATATTTAATTGTATGCAAAATTAAGAGGAAATTTCTATAGGCGTTCAAATTAGGACAAAATGG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
* * *
24273146 ACTGTCAGGCCAAACTACCCAGCCAAACAGCCCTTC
66 ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
** * * *
24273182 CAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGCATT-ATAATTGGGATGAAATG
1 CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA-AATTGGGACGAAATG
* *
24273246 GAC-GCTCATGCCAAACTGCCCTGCCAAA
65 GACTG-TCATGCCAAACTACCCAGCCAAA
24273274 ATTGATTGAA
Statistics
Matches: 1470, Mismatches: 284, Indels: 187
0.76 0.15 0.10
Matches are distributed among these distances:
86 37 0.03
87 50 0.03
88 182 0.12
89 8 0.01
91 4 0.00
92 5 0.00
93 3 0.00
94 1 0.00
95 1 0.00
96 3 0.00
97 3 0.00
98 7 0.00
99 76 0.05
100 506 0.34
101 573 0.39
102 11 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (101 bp):
CAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAATGG
ACTGTCATGCCAAACTACCCAGCCAAACTGCCCTGC
Found at i:24271576 original size:88 final size:88
Alignment explanation
Indices: 24271430--24271594 Score: 206
Period size: 88 Copynumber: 1.9 Consensus size: 88
24271420 CCCTGCCAAT
* * * * * * * *
24271430 ATTTGATTGAATGCAAAATTAAGAAGTCATTTCTATAAGCATTGAAATTTGGACGAAATGGACTG
1 ATTTGAGTAAATGAAAAATTAAGAAGACATTTCTATAAGCATTCAAATATGGAAGAAATGGACAG
24271495 TCATGCCAAACTACCCTGCCTTA
66 TCATGCCAAACTACCCTGCCTTA
* * *
24271518 ATTTGAGTAAATGAAAAATTAATATGACATTTCTGTAAG-AGTTCAAATATGGAAGAAATGGACA
1 ATTTGAGTAAATGAAAAATTAAGAAGACATTTCTATAAGCA-TTCAAATATGGAAGAAATGGACA
*
24271582 GTCATTCCAAACT
65 GTCATGCCAAACT
24271595 CCCAGCCAAA
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
87 1 0.02
88 63 0.98
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (88 bp):
ATTTGAGTAAATGAAAAATTAAGAAGACATTTCTATAAGCATTCAAATATGGAAGAAATGGACAG
TCATGCCAAACTACCCTGCCTTA
Found at i:24271676 original size:100 final size:99
Alignment explanation
Indices: 24271527--24272782 Score: 932
Period size: 100 Copynumber: 12.8 Consensus size: 99
24271517 AATTTGAGTA
* * * * * * * *
24271527 AATGAAAAATTAATATGACATTTCTGTAAGA-GTTCAAATAT-GGAAGAAATGGACAGTCATTCC
1 AATGCAAAATTAAGAGGACATTTCTATAA-ACATTCAAAT-TGGGACGAAATGGACTGTCATGCC
*
24271590 AAACT-CCCAGCCAAATTTCCCAGCCAAAATTTTATTG
64 AAACTACCCAGCCAAA-TTCCCAGCCAAAA-TTGATTG
* * * * *
24271627 AATGCAAAATTAAGAGGACATTTCGATAAACATACAAATTGGAACGAAATGGACTATCATGCAAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * * * *
24271692 ACTATCTAGCTAACCTTCTCTA-TCGAAATTGATTG
66 ACTACCCAGCCAA-ATTC-CCAGCCAAAATTGATTG
* * * * * *
24271727 AATGCAAAATTAAGAGAACGTTTCTATAAGCATTTAAATTGGGACTAAATGAACTGTCATG-CAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
24271791 TACTA--C--CC----T----GCCAAAATTGATTG
66 -ACTACCCAGCCAAATTCCCAGCCAAAATTGATTG
* * * ** * * *
24271814 AATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAAATAGACAGTCATGCCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* **
24271878 ACTACCCAGCCAAATTGTCCTA-CCAATGTTTGATTG
66 ACTACCCAGCCAAA-T-TCCCAGCCAA-AATTGATTG
* * *
24271914 AATGCACAATTAAGAGGACATTTCTATAAAAATTCAAATTGCGACGAAATGGACTGTCATGCCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * ** *
24271979 AATAACAAGCCAAACTACCTTGCCAATATTTGATTG
66 ACTACCCAGCCAAA-TTCCCAGCCAA-AATTGATTG
* * *
24272015 AATGCAAAATTAAGAGGACATTTCT-TAAAGCATTCAAAATT-GGACAAAATGGACTTTTATGCC
1 AATGCAAAATTAAGAGGACATTTCTATAAA-CATTC-AAATTGGGACGAAATGGACTGTCATGCC
*
24272078 AAACT-----G-------CCCTGCCAAAATTTGATTG
64 AAACTACCCAGCCAAATTCCCAGCCAAAA-TTGATTG
* * * * *
24272103 AATGTAAAATTAAGAGGACATTTCTATAGACATTCAAATTGGTACAAAATGGACTGTAATGCCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * * *
24272168 ACTACCCGGCCAAACTGCTATACCAAAATTGATTG
66 ACTACCCAGCCAAATTCCCA-GCCAAAATTGATTG
* ** * *
24272203 AATGCAAAATTAAGAGGAAAATTT-TATAAGTAATAAAATTGGGACGAAATGGACTGTCATGCCA
1 AATGCAAAATTAAGAGG-ACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCA
** **
24272267 AACTACCCAGCCAAACTTTACTTCCAAAATTTGATTG
65 AACTACCCAGCCAAA-TTCCCAGCCAAAA-TTGATTG
* * ** * *
24272304 AATGCAAAATTAAGAGGAAATTTCTATAAGCATTTTAATTGGGATGAAATGGACTATCATGCCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * ** * *
24272369 ACTGCCTAACTGAACTCTCCTGCCAAAATTTGATTG
66 ACTACCCAGCCAAATTC-CCAGCCAAAA-TTGATTG
* * * * ** * *
24272405 AATTCGAACTTACGAGGACATTTCTATAAACATTCAAATTGGGACGAAATTAATTGTCATGGCAA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
* * * *
24272470 ACTACCCAACCAAACTACCATGCCAAAATAGATTG
66 ACTACCCAGCCAAATTCCCA-GCCAAAATTGATTG
* * *
24272505 AATGCAAAATTAAGAGGACATTTCTACAAGA-ATTCAAATTGGGACGAAATGAACGGTCATGCCA
1 AATGCAAAATTAAGAGGACATTTCTATAA-ACATTCAAATTGGGACGAAATGGACTGTCATGCCA
* * * * * *
24272569 AACTACCCAACCAAACTGCTATGCTACAATTGATTG
65 AACTACCCAGCCAAATTCCCA-GCCAAAATTGATTG
* * * *
24272605 AATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGTATGAAATGGACTG-CAATGCTA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTC-ATGCCA
*
24272669 AACTACCCGGCCAAATTGCCCTA-CCAAAATTGATT-
65 AACTACCCAGCCAAATT-CCC-AGCCAAAATTGATTG
* * * * * * * *
24272704 AATGCAAATTTTAGAGGACATTTCTATAAGCATTTAAATAGGGACGAAATGGACTGCCACGCCTA
1 AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
*
24272769 ACTACCGAGCCAAA
66 ACTACCCAGCCAAA
24272783 ATTTGATTGC
Statistics
Matches: 927, Mismatches: 174, Indels: 111
0.76 0.14 0.09
Matches are distributed among these distances:
86 33 0.04
87 41 0.04
88 69 0.07
89 3 0.00
90 2 0.00
91 1 0.00
93 1 0.00
96 3 0.00
99 75 0.08
100 400 0.43
101 291 0.31
102 8 0.01
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (99 bp):
AATGCAAAATTAAGAGGACATTTCTATAAACATTCAAATTGGGACGAAATGGACTGTCATGCCAA
ACTACCCAGCCAAATTCCCAGCCAAAATTGATTG
Found at i:24271883 original size:86 final size:87
Alignment explanation
Indices: 24271717--24271891 Score: 230
Period size: 86 Copynumber: 2.0 Consensus size: 87
24271707 TTCTCTATCG
* * ** * *
24271717 AAATTGATTGAATGCAAAATTAAGAGAACGTTTCTATAAGCATTTAAATTGGGACTAAATGAACT
1 AAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTACGACGAAATGAACA
*
24271782 GTCATGCAATACTACCCTGCCA
66 GTCATGCAATACTACCCAGCCA
* *
24271804 AAATTGATTGAATGCTAAATTAAGAGAACATTT-TATAAGCATTCAAATTACGAGGAAAT-AGAC
1 AAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTACGACGAAATGA-AC
24271867 AGTCATGCCAA-ACTACCCAGCCA
65 AGTCATG-CAATACTACCCAGCCA
24271890 AA
1 AA
24271892 TTGTCCTACC
Statistics
Matches: 77, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
85 1 0.01
86 42 0.55
87 34 0.44
ACGTcount: A:0.42, C:0.17, G:0.15, T:0.26
Consensus pattern (87 bp):
AAATTGATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTACGACGAAATGAACA
GTCATGCAATACTACCCAGCCA
Found at i:24272137 original size:88 final size:88
Alignment explanation
Indices: 24271987--24272181 Score: 286
Period size: 88 Copynumber: 2.2 Consensus size: 88
24271977 AAAATAACAA
* *
24271987 GCCAAACTACCTTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTC-A
* *
24272052 AATTGG-ACAAAATGGACTTTTAT
65 AATTGGTACAAAATGGACTGTAAT
* * *
24272075 GCCAAACTGCCCTGCCAAAATTTGATTGAATGTAAAATTAAGAGGACATTTC-TATAGACATTCA
1 GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAG-CATTCA
24272139 AATTGGTACAAAATGGACTGTAAT
65 AATTGGTACAAAATGGACTGTAAT
*
24272163 GCCAAACTACCCGGCCAAA
1 GCCAAACTACCCTGCCAAA
24272182 CTGCTATACC
Statistics
Matches: 96, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
87 11 0.11
88 85 0.89
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (88 bp):
GCCAAACTACCCTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTTAAAGCATTCAA
ATTGGTACAAAATGGACTGTAAT
Found at i:24273314 original size:87 final size:87
Alignment explanation
Indices: 24273167--24273360 Score: 219
Period size: 87 Copynumber: 2.2 Consensus size: 87
24273157 AAACTACCCA
* * * * *
24273167 GCCAAACAGCCCTTCCAATATTTGATTGAATAAAAAATTAAGAAGTCATTTCTATAAGCATT-AT
1 GCCAAACTGCCCTGCCAA-AATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATTCA-
* **
24273231 AATTGGGATGAAATGGACGCTCAT
64 AATTGGGACGAAATGGACAATCAT
** * *
24273255 GCCAAACTGCCCTGCCAAAATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAAA
1 GCCAAACTGCCCTGCCAAAATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATTCAAA
*
24273320 TTGGTACGAAATGGACAATCAT
66 TTGGGACGAAATGGACAATCAT
* * *
24273342 ACCAAACTACCCAGCCAAA
1 GCCAAACTGCCCTGCCAAA
24273361 CTGCCCTGCC
Statistics
Matches: 89, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
87 72 0.81
88 17 0.19
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.25
Consensus pattern (87 bp):
GCCAAACTGCCCTGCCAAAATTGATTGAACAAAAAATTAAGAAGACATTTCTATAAGCATTCAAA
TTGGGACGAAATGGACAATCAT
Found at i:24273430 original size:101 final size:100
Alignment explanation
Indices: 24273255--24275786 Score: 1109
Period size: 101 Copynumber: 25.9 Consensus size: 100
24273245 GGACGCTCAT
* * *
24273255 GCCAAACTGCCCTGCCAA-AATTGATTGAACGCAAATTTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
**
24273319 ATTGGTACGAAATGGACAATCATACCAAACTACCCA
66 ATTGG-ACGAAATGGACTGTCATACCAAACTACCCA
* * *
24273355 GCCAAACTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* **
24273420 ATTGCGACGAAATGGACTGTCATGCCAAACTA-TTA
66 ATTG-GACGAAATGGACTGTCATACCAAACTACCCA
* * * *
24273455 GCCAAACAGCCCTGCCAATGTTTGATTAAATGCAAAATTAAGAAG-CTATTTCTATAAGCATT-A
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGAC-ATTTCTATAAGCATTCA
* *
24273518 TACTTGGGACGAAATAGACTGTCATACCAAACTACCCA
65 -AATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * **
24273556 GCCAAACTACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACCTTTCTATAAATATTCTA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTC-A
* * *
24273621 ATTTGTACAAAATGGA-T-TC-T--C--A-TGA---A
65 AATTGGACGAAATGGACTGTCATACCAAACT-ACCCA
* * * * * * ** ** * **** **
24273647 ---AAACTTCCATGCCAA-AATTGATTGAATGAAAATTAAAATGGCATTTTTATA-AGCATTAAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGG-ACATTTCTATAAGCATTCA
* * ** **
24273707 ATTGGGACGAAATTTACTGTCA-AGCCAAACCCCCCA
65 AATTGGACGAAATGGACTGTCATA-CCAAACTACCCA
* *
24273743 GCCAAACTGCCCTACCAATATTTGATTGAATGCAAAATTAATAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24273808 ATTGGGATGAAATGGACTGTCATGCCAAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
** * *
24273844 GCCAAACAACCCTGCCAGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ** *
24273909 ATTGAGACAAAATGGACTGTCATGGCAAGCTACCCA
66 ATTG-GACGAAATGGACTGTCATACCAAACTACCCA
* * * * * * * * *
24273945 GCCATACTGCCTTGCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTTATAAACAATCA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACA-TTTCTATAAGCATTCA
*
24274010 AATTGGGAC-AAACGGACTGT--T-----A-T-----
65 AATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * * *
24274033 GCCAAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATCCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ****
24274098 ATTAGGACGAAATGGACTATCATGTTGAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * *
24274134 GCC--A----------AA-ATTTGATTGAATGCAAAAGTAAGA-C--ATTTTTATAAGTATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * **
24274183 ATTGGGTCGAAATGTACTGTAATGTCAAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * * *
24274219 GTCAAACTG-CCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24274283 ATTGGGATGAAATTGACTGTCATGCCAAACTACCTA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * *
24274319 GCAAAACTGACTTGCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAACATTAAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* ****
24274384 ATTGGGACGAAATGTACTGTCACGGGAAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * * * *
24274420 GCCAAACAGCCATACCAA-AATTGATGGAATGC-AAATTTA-A-GACATTTCTATATGTATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
*
24274481 ATTGGGACGAAATGGAC--T--T-GC--A-T-----
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * *
24274504 GTCAAACAGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAG-AGGACATTTCTATAAGCATTCA
* * *
24274568 AATTGGGATGAAATGGTCTGTCATGCCAAACTACCCA
65 AATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * *
24274605 ACCAATCTGTCCTGCCAAAATTTGATTGGATTCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * *
24274670 ATTGGGACGAAATGTACTGTCATGCCAAACTACGCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* ** *** * ** **** *
24274706 GCCAAACT---AT-CC--TATCGGGAGAAAATGGACAATCATGTCAA-ATTACCCAACCA-AACT
1 GCCAAACTGCCCTGCCAATAT-TTGATTGAAT-G-CAA-AAT-T-AAGAGGACATTTCTATAA--
* * * * * ** * **
24274763 GCCTTGCCAAAATTGGTTGAATGCAAAATTAAGA-GGACATTTC-TA-TAAGCA
58 GCATT--C-AAATT-G--G-A--CGAAA-T-GGACTGTCATACCAAACTACCCA
** * * * * * * * * ** * *
24274814 TTCAAATTG---AGACGAA-A-TGGACTGTCATGCCAAACTACCTAGTCAAACTGCCCTTCTA-A
1 GCCAAACTGCCCTG-CCAATATTTGATTG-AATGCAAAATTA-AGAG-GACA-T----TTCTATA
** * * * * ** * ** *
24274873 A--ATT-TGATTGAACTCAAA---A-T-TAAAAGTAGA-TTTCTA
57 AGCATTCAAATTGGAC-GAAATGGACTGTCATACCAAACTACCCA
* * * * *
24274909 --TAAACAT----T--TAA-ATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCA
1 GCCAAAC-TGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCA
** ** *
24274965 AATTTTAAAAAAAATGGACTGTCATGCCAAACTACCCA
65 AA--TTGGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * * *
24275003 GCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGGACATTTCTATAGGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24275068 ATTAGGACGAAATGAACTGTCTTGCCAAACTACCTA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
** * * ** * * *
24275104 GCCAAACTGCCCTATCAA-AATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAACGTTAAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24275168 ATTGGGATGAAATAGACTGTCATTCCAAACTACCAA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * ** * * * * ** *
24275204 ACTAAATTGCGATGCCAA-AATTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24275268 ATTGGGACAAAATGGACTGTTACACTAAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * * * * *
24275304 ACCAAACTGCCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTATATAAGCATACAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24275369 ATTGGGACAAAATGGACTGTCATGCCAAACTACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
* * *** * * *
24275405 ACAAAACTATTCTGCCAA-AATTGATTGAATGCAAAATTAAGAGGAAATTTCCATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24275469 ATTGAGA-GAAAATGGACTGTCATGCCAAACTATCCA
66 ATTG-GACG-AAATGGACTGTCATACCAAACTACCCA
* * * * ** * * *
24275505 ACCAAACTACCCTACCAAAATTTGATTGAATGCAAAATTTGGAGGACACTTCTTTAAGCATTTAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24275570 ATTGGGA-TAGAATAGACTATCATGCCAAACTACCCA
66 ATT-GGACGA-AATGGACTGTCATACCAAACTACCCA
* * * * *
24275606 GCAAAATTGGCCTGCCAA-AATTGATTGAATGCAAATTTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* * * *
24275670 ATTGGGGCGAAATTGACTGTCATGCCAAACGACCCA
66 ATT-GGACGAAATGGACTGTCATACCAAACTACCCA
24275706 GCC--A----------AA-ATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
1 GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
* *
24275758 ATTTGGAAGAAATGGACTGTTATACCAAA
66 A-TTGGACGAAATGGACTGTCATACCAAA
24275787 TTGCCCTGGC
Statistics
Matches: 1851, Mismatches: 434, Indels: 306
0.71 0.17 0.12
Matches are distributed among these distances:
83 5 0.00
84 17 0.01
85 58 0.03
86 21 0.01
87 46 0.02
88 196 0.11
89 11 0.01
90 15 0.01
91 7 0.00
92 3 0.00
93 11 0.01
94 7 0.00
95 10 0.01
96 13 0.01
97 56 0.03
98 7 0.00
99 36 0.02
100 517 0.28
101 689 0.37
102 67 0.04
103 3 0.00
104 8 0.00
105 4 0.00
106 2 0.00
107 3 0.00
108 13 0.01
109 11 0.01
110 9 0.00
111 2 0.00
113 4 0.00
ACGTcount: A:0.39, C:0.18, G:0.16, T:0.27
Consensus pattern (100 bp):
GCCAAACTGCCCTGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAA
ATTGGACGAAATGGACTGTCATACCAAACTACCCA
Found at i:24273562 original size:13 final size:13
Alignment explanation
Indices: 24273544--24273573 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
24273534 GACTGTCATA
24273544 CCAAACTACCCAG
1 CCAAACTACCCAG
24273557 CCAAACTACCCAG
1 CCAAACTACCCAG
24273570 CCAA
1 CCAA
24273574 TATTTGATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.47, G:0.07, T:0.07
Consensus pattern (13 bp):
CCAAACTACCCAG
Found at i:24273748 original size:288 final size:289
Alignment explanation
Indices: 24273358--24274712 Score: 764
Period size: 286 Copynumber: 4.7 Consensus size: 289
24273348 CTACCCAGCC
* * * * *
24273358 AAACTGCCCTGCCAATATTTGATTGAATGTAAAATTAAGAGGATATTTCTATAGGCATTCAAATT
1 AAACTGCCATGCCAATAATTGATTGAATGTAAAATTAAAAGGATATTTCTATAAGCATTAAAATT
* * ** * *
24273423 GCGACGAAATGGACTGTCATGCCAAACTATTAGCCAAACAGCCCTGCCAATGTTTGATTAAATGC
66 GCGACGAAATGGACTGTCAAGCCAAACCACCAGCCAAACAGCCCTACCAATATTTGATTAAATGC
*
24273488 AAAATTAAGAAG-CTATTTCTATAAGCATT-ATACTTGGGACGAAATAGACTGTCATACCAAACT
131 AAAATTAAGAAGAC-ATTTCTATAAGCATTCA-AATTGGGACGAAATAGACTGTCATACCAAACT
* *
24273551 ACCCAGCCAAACTACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACCTTTCTATAAATA
194 ACCCAGCCAAACAACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAATA
24273616 TTCTAATTTGTACAAAATGGATTCTCATGAA
259 TTCTAATTTGTACAAAATGGATTCTCATGAA
*
24273647 AAACTTCCATGCCAA-AATTGATTGAATG-AAAATTAAAATGGCAT-TTT-TATAAGCATTAAAA
1 AAACTGCCATGCCAATAATTGATTGAATGTAAAATTAAAA-GG-ATATTTCTATAAGCATTAAAA
* ** * * *
24273708 TTGGGACGAAATTTACTGTCAAGCCAAACCCCCCAGCCAAACTGCCCTACCAATATTTGATTGAA
64 TTGCGACGAAATGGACTGTCAAGCCAAA-CCACCAGCCAAACAGCCCTACCAATATTTGATTAAA
* * * * *
24273773 TGCAAAATTAATAGGACATTTCTATAAGCATTCAAATTGGGATGAAATGGACTGTCATGCCAAAC
128 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATAGACTGTCATACCAAAC
* * * **
24273838 TACCCAGCCAAACAACCCTGCCAGTATTTGATTGAATGCAAAATTAAGAGGATATTTCTATAAGC
193 TACCCAGCCAAACAACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAAT
* * *
24273903 ATTC-AAATTGAGACAAAATGGACTGTCATGGCAAGCTACCCA
258 ATTCTAATTTG-TACAAAATGGA-T-TC-T--CATG--A---A
* * * * * * *
24273945 GCCATACTGCCTTGCCAA-AATTTGATTGAAT-TCAAAATTAAGAGAATATTTTTTATAAACAAT
1 ---AAACTGCCATGCCAATAA-TTGATTGAATGT-AAAATTAAAAGGATA-TTTCTATAAGCATT
* * * * * * * * *
24274008 CAAATTGGGAC-AAACGGACTGT----------TA--TGCCAAACTGCCCTTCCAAAATTTGATG
60 AAAATTGCGACGAAATGGACTGTCAAGCCAAACCACCAGCCAAACAGCCCTACCAATATTTGATT
* * * * * *
24274060 GAATGCAAGATTAAGAAGTCATTTCTATAAGCATCCAAATTAGGACGAAATGGAC--T-AT--C-
125 AAATGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATAGACTGTCATACCA
*** * * * *
24274119 -A-T-----GTTGAACTACCCAGCCAAAATTTGATTGAATGCAAAAGT-A-A-GACATTTTTATA
190 AACTACCCAGCCAAACAACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATA
* * * * **
24274174 AGTATTCAAATTGGGT-CGAAATGTACTGTAATGTCAAACTACCCA-GTC
255 AATATTCTAATT-TGTAC-AAA---A-TG-GAT-T----CT---CATGAA
* *
24274222 AAACTGCC-TGCCAA-AATTAGATTGAATGTAAAATTAAGAA-GACATTTGTATAAGCATTAAAA
1 AAACTGCCATGCCAATAATT-GATTGAATGTAAAATTAA-AAGGATATTTCTATAAGCATTAAAA
* * * * * * * * * * * *
24274284 TTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGACTTGCCAAAATTTGATTGAA
64 TTGCGACGAAATGGACTGTCAAGCCAAACCACC-AGCCAAACAGCCCTACCAATATTTGATTAAA
* * * ****
24274349 TGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAAT-GTACTGTCACGGGAAA
128 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATAG-ACTGTCATACCAAA
* * * * * *
24274413 CTACCCAGCCAAAC-AGCCATACCAA-AATTGATGGAATGC-AAATTTA-A-GACATTTCTATAT
192 CTACCCAGCCAAACAACCCA-GCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAA
* * * * * * **
24274473 GTATTCAAATTGGGACGAAATGGACTT-GCATGTC
256 ATATTCTAATTTGTACAAAATGGA-TTCTCATGAA
* * * * * * *
24274507 AAACAGCCCTGCCAA-AATTTGATTGAATGCAAAATTAAGTA-GACATTTCTATAAGGATTCAAA
1 AAACTGCCATGCCAATAA-TTGATTGAATGTAAAATTAA-AAGGATATTTCTATAAGCATTAAAA
* * * * * * * * * * * **
24274570 TTGGGATGAAATGGTCTGTCATGCCAAACTACCCAACCAATCTGTCCTGCCAAAATTTGATTGGA
64 TTGCGACGAAATGGACTGTCAAGCCAAACCA-CCAGCCAAACAGCCCTACCAATATTTGATTAAA
* * *
24274635 TTCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGACGAAAT-GTACTGTCATGCCAAA
128 TGCAAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATAG-ACTGTCATACCAAA
*
24274699 CTACGCAGCCAAAC
192 CTACCCAGCCAAAC
24274713 TATCCTATCG
Statistics
Matches: 851, Mismatches: 138, Indels: 157
0.74 0.12 0.14
Matches are distributed among these distances:
272 22 0.03
273 35 0.04
274 26 0.03
275 7 0.01
276 2 0.00
277 31 0.04
278 1 0.00
279 5 0.01
280 1 0.00
282 3 0.00
283 6 0.01
284 2 0.00
285 12 0.01
286 239 0.28
287 56 0.07
288 174 0.20
289 19 0.02
290 74 0.09
291 1 0.00
292 2 0.00
293 7 0.01
294 2 0.00
295 1 0.00
297 8 0.01
298 42 0.05
299 8 0.01
301 16 0.02
302 11 0.01
303 20 0.02
304 18 0.02
ACGTcount: A:0.38, C:0.18, G:0.16, T:0.27
Consensus pattern (289 bp):
AAACTGCCATGCCAATAATTGATTGAATGTAAAATTAAAAGGATATTTCTATAAGCATTAAAATT
GCGACGAAATGGACTGTCAAGCCAAACCACCAGCCAAACAGCCCTACCAATATTTGATTAAATGC
AAAATTAAGAAGACATTTCTATAAGCATTCAAATTGGGACGAAATAGACTGTCATACCAAACTAC
CCAGCCAAACAACCCAGCCAATATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAATATT
CTAATTTGTACAAAATGGATTCTCATGAA
Found at i:24274214 original size:85 final size:86
Alignment explanation
Indices: 24273958--24274224 Score: 259
Period size: 88 Copynumber: 3.1 Consensus size: 86
24273948 ATACTGCCTT
* * * *
24273958 GCCAAAATTTGATTGAATTCAAAATTAAGAGAATATTTTTTATAAACAATCAAATTGGGAC-AAA
1 GCCAAAATTTGATTGAATGCAAAATT-A-AGAACA-TTTTTATAAGCATTCAAATTGGGACGAAA
* * * * *
24274022 CGGACTGTTATGCCAAACTGCCCT
63 TGGACTGTAATGTCAAACTACCCA
* * * * * *
24274046 TCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATCCAAATTAGGACGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAA--CATTTTTATAAGCATTCAAATTGGGACGAAAT
* * **
24274111 GGACTATCATGTTGAACTACCCA
64 GGACTGTAATGTCAAACTACCCA
* * * *
24274134 GCCAAAATTTGATTGAATGCAAAAGTAAG-ACATTTTTATAAGTATTCAAATTGGGTCGAAATGT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAACATTTTTATAAGCATTCAAATTGGGACGAAATGG
24274198 ACTGTAATGTCAAACTACCCA
66 ACTGTAATGTCAAACTACCCA
*
24274219 GTCAAA
1 GCCAAA
24274225 CTGCCTGCCA
Statistics
Matches: 143, Mismatches: 33, Indels: 9
0.77 0.18 0.05
Matches are distributed among these distances:
85 50 0.35
86 4 0.03
87 22 0.15
88 67 0.47
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (86 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAACATTTTTATAAGCATTCAAATTGGGACGAAATGG
ACTGTAATGTCAAACTACCCA
Found at i:24274316 original size:185 final size:189
Alignment explanation
Indices: 24274033--24274711 Score: 677
Period size: 185 Copynumber: 3.6 Consensus size: 189
24274023 GGACTGTTAT
* * * * *
24274033 GCCAAACTGCCCTTCCAAAATTTGATGGAATGCAAGATTAAGAAGTCATTTCTATAAGCATCCAA
1 GCCAAACTGCCCTGCCAAAATTTGATGGAATGTAAAATTAAGAAGACATTTCTATAAGCATTCAA
* * *** *
24274098 ATTAGGACGAAATGGACTATCATGTTGAACTA-CCCAGCCAAAATTTGATTGAATGCAAAAGT-A
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACCCCAGCCAAAATTTGATTGAATGCAAAATTAA
* * * *
24274161 -AGACATTTTTATAAGTATTCAAATTGGGTCGAAATGTACTGTAATGTCAAACTACCCA
131 GAGACATTTCTATAAGCATTCAAATTGGGTCGAAATGTACTGTCATGCCAAACTACCCA
* * * * *
24274219 GTCAAACTG-CCTGCCAAAATTAGATTGAATGTAAAATTAAGAAGACATTTGTATAAGCATTAAA
1 GCCAAACTGCCCTGCCAAAATTTGATGGAATGTAAAATTAAGAAGACATTTCTATAAGCATTCAA
* *
24274283 ATTGGGATGAAATTGACTGTCATGCCAAACTACCTAGCAAAACTGACTTGCCAAAATTTGATTGA
66 ATTGGGACGAAATGGACTGTCATGCCAAACTACC---C----C--A---GCCAAAATTTGATTGA
* * * * **
24274348 ATGCAAAATTAAGAGGACATTTCTATAAACATTAAAATTGGGACGAAATGTACTGTCACGGGAAA
119 ATGCAAAATTAAGA-GACATTTCTATAAGCATTCAAATTGGGTCGAAATGTACTGTCATGCCAAA
24274413 CTACCCA
183 CTACCCA
* * * * * * *
24274420 GCCAAACAGCCATACCAAAA-TTGATGGAATG-CAAATT--TAAGACATTTCTATATGTATTCAA
1 GCCAAACTGCCCTGCCAAAATTTGATGGAATGTAAAATTAAGAAGACATTTCTATAAGCATTCAA
* * *
24274481 ATTGGGACGAAATGGACT-TGCATGTCAAAC-AGCCCTGCCAAAATTTGATTGAATGCAAAATTA
66 ATTGGGACGAAATGGACTGT-CATGCCAAACTACCCCAGCCAAAATTTGATTGAATGCAAAATTA
*
24274544 AGTAGACATTTCTATAAGGATTCAAATTGGGAT-GAAATGGT-CTGTCATGCCAAACTACCCA
130 AG-AGACATTTCTATAAGCATTCAAATTGGG-TCGAAAT-GTACTGTCATGCCAAACTACCCA
* * * *
24274605 ACCAATCTGTCCTGCCAAAATTTGATTGG-AT-TCAAAATTAAGAGGACATTTCTATAAGCATTC
1 GCCAAACTGCCCTGCCAAAATTTGA-TGGAATGT-AAAATTAAGAAGACATTTCTATAAGCATTC
* *
24274668 AAATTGGGACGAAATGTACTGTCATGCCAAACTA-CGCAGCCAAA
64 AAATTGGGACGAAATGGACTGTCATGCCAAACTACCCCAGCCAAA
24274712 CTATCCTATC
Statistics
Matches: 398, Mismatches: 66, Indels: 55
0.77 0.13 0.11
Matches are distributed among these distances:
185 160 0.40
186 18 0.05
187 8 0.02
189 55 0.14
190 3 0.01
193 1 0.00
194 1 0.00
195 1 0.00
197 3 0.01
198 69 0.17
199 1 0.00
200 6 0.02
201 64 0.16
202 8 0.02
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (189 bp):
GCCAAACTGCCCTGCCAAAATTTGATGGAATGTAAAATTAAGAAGACATTTCTATAAGCATTCAA
ATTGGGACGAAATGGACTGTCATGCCAAACTACCCCAGCCAAAATTTGATTGAATGCAAAATTAA
GAGACATTTCTATAAGCATTCAAATTGGGTCGAAATGTACTGTCATGCCAAACTACCCA
Found at i:24274537 original size:85 final size:86
Alignment explanation
Indices: 24274422--24274583 Score: 229
Period size: 88 Copynumber: 1.9 Consensus size: 86
24274412 ACTACCCAGC
* * *
24274422 CAAACAGCCATACCAAAATTGATGGAATGC-AAATTTA-AGACATTTCTATATGTATTCAAATTG
1 CAAACAGCCATACCAAAATTGATGGAATGCAAAATTAAGAGACATTTCTATAAGGATTCAAATTG
24274485 GGACGAAATGGACTTGCATGT
66 GGACGAAATGGACTTGCATGT
* * *
24274506 CAAACAGCCCTGCCAAAATTTGATTGAATGCAAAATTAAGTAGACATTTCTATAAGGATTCAAAT
1 CAAACAGCCATACCAAAA-TTGATGGAATGCAAAATTAAG-AGACATTTCTATAAGGATTCAAAT
*
24274571 TGGGATGAAATGG
64 TGGGACGAAATGG
24274584 TCTGTCATGC
Statistics
Matches: 67, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 16 0.24
85 11 0.16
86 6 0.09
88 34 0.51
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.28
Consensus pattern (86 bp):
CAAACAGCCATACCAAAATTGATGGAATGCAAAATTAAGAGACATTTCTATAAGGATTCAAATTG
GGACGAAATGGACTTGCATGT
Found at i:24274939 original size:46 final size:46
Alignment explanation
Indices: 24274872--24274969 Score: 126
Period size: 46 Copynumber: 2.1 Consensus size: 46
24274862 TGCCCTTCTA
* * * *
24274872 AAATTTGATTGAACTCAAAATTAAAAGTAGATTTCTATAAACATTT
1 AAATTTAATTGAACTCAAAATTAAAAGAAAATTTCTATAAACATTC
* *
24274918 AAATTTAATTGAA-TGCAAAATTAAGAGAAAATTTCTATAAGCATTC
1 AAATTTAATTGAACT-CAAAATTAAAAGAAAATTTCTATAAACATTC
24274964 AAATTT
1 AAATTT
24274970 TAAAAAAAAT
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
45 1 0.02
46 44 0.98
ACGTcount: A:0.47, C:0.08, G:0.09, T:0.36
Consensus pattern (46 bp):
AAATTTAATTGAACTCAAAATTAAAAGAAAATTTCTATAAACATTC
Found at i:24275046 original size:148 final size:147
Alignment explanation
Indices: 24274779--24275058 Score: 409
Period size: 148 Copynumber: 1.9 Consensus size: 147
24274769 CCAAAATTGG
* * * **
24274779 TTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGAGACGAAATGGACTGTCATGC
1 TTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATGC
* * * * * * *
24274844 CAAACTACCTAGTCAAACTGCCCTTCTAAAATTTGATTGAACTCAAAATTAAAAGTAGATTTCTA
66 CAAACTACCCAGCCAAAATGCCCTTCCAAAATTGGATTGAACTCAAAATTAAAAGGACATTTCTA
24274909 TAAACATTTAAATTTAA
131 TAAACATTTAAATTTAA
*
24274926 TTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTTAAAAAAAATGGACTGTCATG
1 TTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAA-TTGAAAAAAAATGGACTGTCATG
*
24274991 CCAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAA-TGCAAAATTAAAAGGACATTTC
65 CCAAACTACCCAGCCAAAATGCCCTTCCAAAATTGGATTGAACT-CAAAATTAAAAGGACATTTC
24275055 TATA
129 TATA
24275059 GGCATTCAAA
Statistics
Matches: 117, Mismatches: 14, Indels: 3
0.87 0.10 0.02
Matches are distributed among these distances:
147 40 0.34
148 77 0.66
ACGTcount: A:0.42, C:0.16, G:0.12, T:0.29
Consensus pattern (147 bp):
TTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTGAAAAAAAATGGACTGTCATGC
CAAACTACCCAGCCAAAATGCCCTTCCAAAATTGGATTGAACTCAAAATTAAAAGGACATTTCTA
TAAACATTTAAATTTAA
Found at i:24275154 original size:100 final size:100
Alignment explanation
Indices: 24274925--24275786 Score: 818
Period size: 100 Copynumber: 8.7 Consensus size: 100
24274915 TTTAAATTTA
* *** **
24274925 ATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTTAAAAAAAATGGACTGTCAT
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAA-TTGGGACGAAATGGACTGTCAT
* * * *
24274990 GCCAAACTACCCAGCCAAAATTCCCTTCCAAAATTGG
65 GCCAAACTACCCAACCAAACTGCCCTACCAAAATT-G
* * * * * *
24275027 ATTGAATGCAAAATTAAAAGGACATTTCTATAGGCATTCAAATTAGGACGAAATGAACTGTCTTG
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * *
24275092 CCAAACTACCTAGCCAAACTGCCCTATCAAAATTG
66 CCAAACTACCCAACCAAACTGCCCTACCAAAATTG
* * * * * * * *
24275127 ATTGAATGCAAAGTTAAGAAAACATTTCTATAAACGTTAAAATTGGGATGAAATAGACTGTCATT
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* * * ** *
24275192 CCAAACTACCAAACTAAATTGCGATGCCAAAATTG
66 CCAAACTACCCAACCAAACTGCCCTACCAAAATTG
* * ** * * * **
24275227 ATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGACTGTTACA
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
24275292 CTAAACTACCCAACCAAACTGCCTTACCAAAATTTG
66 CCAAACTACCCAACCAAACTGCCCTACCAAAA-TTG
* * * *
24275328 ATTGAATGCAAAATTAAGAGGACATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *** *
24275393 CCAAACTACCCAACAAAACTATTCTGCCAAAATTG
66 CCAAACTACCCAACCAAACTGCCCTACCAAAATTG
* *
24275428 ATTGAATGCAAAATTAAGAGGAA-ATTTCCATAAGCATTCAAATTGAGA-GAAAATGGACTGTCA
1 ATTGAATGCAAAATTAAGA-GAACATTTCTATAAGCATTCAAATTGGGACG-AAATGGACTGTCA
* *
24275491 TGCCAAACTATCCAACCAAACTACCCTACCAAAATTTG
64 TGCCAAACTACCCAACCAAACTGCCCTACCAAAA-TTG
** * * * * * * *
24275529 ATTGAATGCAAAATTTGGAGGACACTTCTTTAAGCATTTAAATTGGGA-TAGAATAGACTATCAT
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGA-AATGGACTGTCAT
* * * * *
24275593 GCCAAACTACCCAGCAAAATTGGCCTGCCAAAATTG
65 GCCAAACTACCCAACCAAACTGCCCTACCAAAATTG
* * * *
24275629 ATTGAATGCAAATTTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATG
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
* *
24275694 CCAAACGA--C--CC--A--G-CC-A--AAATTTG
66 CCAAACTACCCAACCAAACTGCCCTACCAAAATTG
* * * * *
24275717 ATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGAAGAAATGGACTGTTATA
1 ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
24275782 CCAAA
66 CCAAA
24275787 TTGCCCTGGC
Statistics
Matches: 629, Mismatches: 124, Indels: 28
0.81 0.16 0.04
Matches are distributed among these distances:
88 69 0.11
91 2 0.00
92 1 0.00
94 1 0.00
96 1 0.00
98 1 0.00
100 308 0.49
101 208 0.33
102 38 0.06
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (100 bp):
ATTGAATGCAAAATTAAGAGAACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATG
CCAAACTACCCAACCAAACTGCCCTACCAAAATTG
Found at i:24275525 original size:301 final size:301
Alignment explanation
Indices: 24274918--24275705 Score: 879
Period size: 301 Copynumber: 2.6 Consensus size: 301
24274908 ATAAACATTT
* * * * * ***
24274918 AAATTTAATTGAATGCAAAATTAAGAGAAAATTTCTATAAGCATTCAAATTTTAAAAAAAATGGA
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATT-AAAATTGGGAAAAAATGGA
* * *
24274983 CTGTCATGCCAAACTACCCAGCCAAAATTCCCTTCCAAAATTGGATTGAATGCAAAATTAAAAGG
65 CTGTCATGCCAAACTACCCAGCC-AAATTGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGG
* * * * * * * *
24275048 ACATTTCTATAGGCATTCAAATTAGGACGAAATGAACTGTCTTGCCAAACTACCTAGCCAAACTG
129 ACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACAAAACTA
* * * * *
24275113 CCCTATCAAAATTGATTGAATGCAAAGTTAAGAAAACATTTCTATAAACGTTAAAATTGGGATGA
194 CCCTACCAAAATTGATTGAATGCAAAATTAAGAAAACATTTCCATAAACATTAAAATTGAGATGA
* * * * * *
24275178 AATAGACTGTCATTCCAAACTACCAAACTAAATTGCGATGCCA
259 AATAGACTGTCATGCCAAACTACCAAACCAAACTACCATACCA
** *
24275221 AAA-TTGATTGAATGCAAAATTATGAGAACATTTTTATAAAAATTAAAATTGGGACAAAATGGAC
1 AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
* ** * * *
24275285 TGTTACACTAAACTACCCAACCAAACTGCCTTACCAAAATTTGATTGAATGCAAAATTAAGAGGA
66 TGTCATGCCAAACTACCCAGCCAAATTGCCTT-CCAAAATTTGATTGAATGCAAAATTAAGAGGA
* * * *
24275350 CATTTATATAAGCATACAAATTGGGACAAAATGGACTGTCATGCCAAACTACCCAACAAAACTAT
130 CATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACAAAACTAC
* * * * *
24275415 TCTGCCAAAATTGATTGAATGCAAAATTAAGAGGAA-ATTTCCATAAGCATTCAAATTGAGA-GA
195 CCTACCAAAATTGATTGAATGCAAAATTAAGA-AAACATTTCCATAAACATTAAAATTGAGATG-
* *
24275478 AAATGGACTGTCATGCCAAACTATCC-AACCAAACTACCCTACCA
258 AAATAGACTGTCATGCCAAACTA-CCAAACCAAACTACCATACCA
* * * * * *
24275522 AAATTTGATTGAATGCAAAATT-TGGAGGACACTTCTT-TAAGCATTTAAATTGGGATAGAATAG
1 AAATTTGATTGAATGCAAAATTAT-GAGAACA-TTTTTATAAGCATTAAAATTGGGAAAAAATGG
* * * *
24275585 ACTATCATGCCAAACTACCCAGCAAAATTGGCCTGCCAAAA-TTGATTGAATGCAAATTTAAGAG
64 ACTGTCATGCCAAACTACCCAGCCAAATT-GCCTTCCAAAATTTGATTGAATGCAAAATTAAGAG
* * *
24275649 GACATTTCTATAAGCATTCAAATTGGGGCGAAATTGACTGTCATGCCAAACGACCCA
128 GACATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCA
24275706 GCCAAAATTT
Statistics
Matches: 403, Mismatches: 74, Indels: 18
0.81 0.15 0.04
Matches are distributed among these distances:
300 9 0.02
301 273 0.68
302 110 0.27
303 11 0.03
ACGTcount: A:0.41, C:0.18, G:0.15, T:0.26
Consensus pattern (301 bp):
AAATTTGATTGAATGCAAAATTATGAGAACATTTTTATAAGCATTAAAATTGGGAAAAAATGGAC
TGTCATGCCAAACTACCCAGCCAAATTGCCTTCCAAAATTTGATTGAATGCAAAATTAAGAGGAC
ATTTCTATAAGCATTCAAATTGGGACGAAATGGACTGTCATGCCAAACTACCCAACAAAACTACC
CTACCAAAATTGATTGAATGCAAAATTAAGAAAACATTTCCATAAACATTAAAATTGAGATGAAA
TAGACTGTCATGCCAAACTACCAAACCAAACTACCATACCA
Found at i:24275726 original size:88 final size:88
Alignment explanation
Indices: 24275619--24275835 Score: 303
Period size: 88 Copynumber: 2.5 Consensus size: 88
24275609 AAATTGGCCT
* **
24275619 GCCAAAA-TTGATTGAATGCAAATTTAAGAGGACATTTCTATAAGCATTCAAATTGGGGCGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAGAAAT
* *
24275683 TGACTGTCATGCCAAA-CGACCCA
66 GGACTGTCATACCAAATCG-CCCA
*
24275706 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTTGGAAGAAAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAGAAAT
* * *
24275771 GGACTGTTATACCAAATTGCCCT
66 GGACTGTCATACCAAATCGCCCA
* * *
24275794 GGCAAAATTTAATTGAATGCAAAATTAAAAGGACATTTCTAT
1 GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTAT
24275836 CTAATCTGTA
Statistics
Matches: 116, Mismatches: 12, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
87 7 0.06
88 108 0.93
89 1 0.01
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (88 bp):
GCCAAAATTTGATTGAATGCAAAATTAAGAGGACATTTCTATAAGCATTCAAATTGGGAAGAAAT
GGACTGTCATACCAAATCGCCCA
Found at i:24277764 original size:353 final size:354
Alignment explanation
Indices: 24277118--24277826 Score: 1411
Period size: 353 Copynumber: 2.0 Consensus size: 354
24277108 CAAACGCTCC
24277118 ATCCAGTGACCTACAGGCTCCTGTTGCTTTGTCAGCGTCTATCAATATATAATAGAAATAACTGT
1 ATCCAGTGACCTACAGGCTCCTGTTGCTTTGTCAGCGTCTATCAATATATAATAGAAATAACTGT
24277183 TACCACTTCTCTTTTAAGGAGATTGACTATGCCATATTATAATTGAGATTGTGGAATGCTTTTCA
66 TACCACTTCTCTTTTAAGGAGATTGACTATGCCATATTATAATTGAGATTGTGGAATGCTTTTCA
24277248 AAATTATTATGGAAAAGTGTTCTTGAAATGTTTAAAATGTTTAGTATTATTGAAAAAAAGCTTTT
131 AAATTATTATGGAAAAGTGTTCTTGAAATGTTTAAAATGTTTAGTATTATTGAAAAAAAGCTTTT
24277313 AGAAAGATGAAATGCTTATTTTAAATATGATGTTATAAAATAAAATATATGTATTTAAATGATAT
196 AGAAAGATGAAATGCTTATTTTAAATATGATGTTATAAAATAAAATATATGTATTTAAATGATAT
24277378 TTAAATTTAAATTATAGTAAAACTTCAAGTAAGCCCTCACAATAAAAATAAATTGTTAAACAATT
261 TTAAATTTAAATTATAGTAAAACTTCAAGTAAGCCCTCACAATAAAAATAAATTGTTAAACAATT
24277443 AATATTATTATATATGAAA-ATTTGGAAT
326 AATATTATTATATATGAAATATTTGGAAT
24277471 ATCCAGTGACCTACAGGCTCCTGTTGCTTTGTCAGCGTCTATCAATATATAATAGAAATAACTGT
1 ATCCAGTGACCTACAGGCTCCTGTTGCTTTGTCAGCGTCTATCAATATATAATAGAAATAACTGT
24277536 TACCACTTCTCTTTTAAGGAGATTGACTATGCCATATTATAATTGAGATTGTGGAATGCTTTTCA
66 TACCACTTCTCTTTTAAGGAGATTGACTATGCCATATTATAATTGAGATTGTGGAATGCTTTTCA
24277601 AAATTATTATGGAAAAGTGTTCTTGAAATGTTTAAAATGTTTAGTATTATTGAAAAAAAGCTTTT
131 AAATTATTATGGAAAAGTGTTCTTGAAATGTTTAAAATGTTTAGTATTATTGAAAAAAAGCTTTT
24277666 AGAAAGATGAAATGCTTATTTTAAATATGATGTTATAAAATAAAATATATGTATTTAAATGATAT
196 AGAAAGATGAAATGCTTATTTTAAATATGATGTTATAAAATAAAATATATGTATTTAAATGATAT
24277731 TTAAATTTAAATTATAGTAAAACTTCAAGTAAGCCCTCACAATAAAAATAAATTGTTAAACAATT
261 TTAAATTTAAATTATAGTAAAACTTCAAGTAAGCCCTCACAATAAAAATAAATTGTTAAACAATT
24277796 AATATTATTATATATGAAATATTTGGAAT
326 AATATTATTATATATGAAATATTTGGAAT
24277825 AT
1 AT
24277827 ATAAATTTAA
Statistics
Matches: 355, Mismatches: 0, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
353 344 0.97
354 11 0.03
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.38
Consensus pattern (354 bp):
ATCCAGTGACCTACAGGCTCCTGTTGCTTTGTCAGCGTCTATCAATATATAATAGAAATAACTGT
TACCACTTCTCTTTTAAGGAGATTGACTATGCCATATTATAATTGAGATTGTGGAATGCTTTTCA
AAATTATTATGGAAAAGTGTTCTTGAAATGTTTAAAATGTTTAGTATTATTGAAAAAAAGCTTTT
AGAAAGATGAAATGCTTATTTTAAATATGATGTTATAAAATAAAATATATGTATTTAAATGATAT
TTAAATTTAAATTATAGTAAAACTTCAAGTAAGCCCTCACAATAAAAATAAATTGTTAAACAATT
AATATTATTATATATGAAATATTTGGAAT
Found at i:24292895 original size:24 final size:21
Alignment explanation
Indices: 24292833--24292895 Score: 63
Period size: 24 Copynumber: 2.7 Consensus size: 21
24292823 TAAAAATAAA
24292833 TTTAAAAATATAATACATCAAATAT
1 TTTAAAAAT-TAA-A-A-CAAATAT
24292858 TTTAAAAATTAAAACAAATATT
1 TTTAAAAATTAAAACAAATA-T
24292880 TTCTAACAAATTAAAA
1 TT-TAA-AAATTAAAA
24292896 ATACATTTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
21 6 0.17
22 4 0.11
23 4 0.11
24 12 0.34
25 9 0.26
ACGTcount: A:0.57, C:0.08, G:0.00, T:0.35
Consensus pattern (21 bp):
TTTAAAAATTAAAACAAATAT
Found at i:24296284 original size:34 final size:33
Alignment explanation
Indices: 24296219--24296289 Score: 81
Period size: 34 Copynumber: 2.1 Consensus size: 33
24296209 ATTATGCTTA
* *
24296219 TATATATACATATTTTTTTATATTAGTTTTTTTT
1 TATATATACATATTTTATTATATTAG-TTTTTAT
*
24296253 TATATATACATATATTTGATTATGTTA-TTTTTAT
1 TATATATACATAT-TTT-ATTATATTAGTTTTTAT
24296287 TAT
1 TAT
24296290 TTTTGTATAC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
34 22 0.69
35 3 0.09
36 7 0.22
ACGTcount: A:0.30, C:0.03, G:0.04, T:0.63
Consensus pattern (33 bp):
TATATATACATATTTTATTATATTAGTTTTTAT
Found at i:24298304 original size:10 final size:10
Alignment explanation
Indices: 24298283--24298365 Score: 52
Period size: 10 Copynumber: 8.4 Consensus size: 10
24298273 AATAAATAAG
24298283 ATTTAA-ATA
1 ATTTAATATA
24298292 ATTTAATATA
1 ATTTAATATA
*
24298302 ATTATACATAAAA
1 ATT-TA-AT-ATA
24298315 TATTTAA-ATA
1 -ATTTAATATA
24298325 ATTTAATATA
1 ATTTAATATA
24298335 A--TAATAT-
1 ATTTAATATA
*
24298342 A-TAACATATA
1 ATTTA-ATATA
*
24298352 ATTTAATTTA
1 ATTTAATATA
24298362 ATTT
1 ATTT
24298366 TTAAATGCGT
Statistics
Matches: 59, Mismatches: 5, Indels: 19
0.71 0.06 0.23
Matches are distributed among these distances:
7 1 0.02
8 7 0.12
9 16 0.27
10 21 0.36
11 4 0.07
12 3 0.05
13 4 0.07
14 3 0.05
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (10 bp):
ATTTAATATA
Found at i:24298323 original size:33 final size:33
Alignment explanation
Indices: 24298265--24298350 Score: 113
Period size: 33 Copynumber: 2.7 Consensus size: 33
24298255 CAAAAAAATA
* *
24298265 AATATAATAATA-A-ATAAGATTTAAATAATTT
1 AATATAATAATACATAAAATATTTAAATAATTT
*
24298296 AATATAATTATACATAAAATATTTAAATAATTT
1 AATATAATAATACATAAAATATTTAAATAATTT
* *
24298329 AATATAATAATATATAACATAT
1 AATATAATAATACATAAAATAT
24298351 AATTTAATTT
Statistics
Matches: 47, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
31 11 0.23
32 1 0.02
33 35 0.74
ACGTcount: A:0.57, C:0.02, G:0.01, T:0.40
Consensus pattern (33 bp):
AATATAATAATACATAAAATATTTAAATAATTT
Found at i:24304900 original size:22 final size:23
Alignment explanation
Indices: 24304875--24304924 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
24304865 ATTTGTTTGT
* *
24304875 CTTTTTTTG-TTTTCTTTATTTA
1 CTTTTTTAGTTTTTATTTATTTA
24304897 CTTTTTTAGTTTTTATTTATTTA
1 CTTTTTTAGTTTTTATTTATTTA
24304920 -TTTTT
1 CTTTTT
24304925 CCTTTATTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 13 0.52
23 12 0.48
ACGTcount: A:0.12, C:0.06, G:0.04, T:0.78
Consensus pattern (23 bp):
CTTTTTTAGTTTTTATTTATTTA
Found at i:24304911 original size:15 final size:16
Alignment explanation
Indices: 24304893--24304950 Score: 58
Period size: 15 Copynumber: 4.1 Consensus size: 16
24304883 GTTTTCTTTA
24304893 TTTACTTT-TTTAGTT
1 TTTACTTTATTTAGTT
24304908 TTTA-TTTATTTA-TT
1 TTTACTTTATTTAGTT
*
24304922 TTTCCTTTATTT-G-T
1 TTTACTTTATTTAGTT
24304936 TTTA-TTTATTT-GTT
1 TTTACTTTATTTAGTT
24304950 T
1 T
24304951 ATTATTGATT
Statistics
Matches: 37, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
13 8 0.22
14 14 0.38
15 15 0.41
ACGTcount: A:0.14, C:0.05, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTACTTTATTTAGTT
Found at i:24304955 original size:24 final size:22
Alignment explanation
Indices: 24304876--24304964 Score: 58
Period size: 24 Copynumber: 3.8 Consensus size: 22
24304866 TTTGTTTGTC
*
24304876 TTTTTTTGTTT-TCTTTATTTA-
1 TTTTTTTATTTGT-TTTATTTAT
* *
24304897 CTTTTTTAGTTTTTATTTATTTAT
1 TTTTTTTA-TTTGT-TTTATTTAT
24304921 TTTTCCTTTATTTGTTTTATTTAT
1 TTTT--TTTATTTGTTTTATTTAT
24304945 TTGTTTATTA-TTGATTTTAT
1 TT-TTT-TTATTTG-TTTTAT
24304965 AATATTTTAA
Statistics
Matches: 55, Mismatches: 5, Indels: 13
0.75 0.07 0.18
Matches are distributed among these distances:
21 6 0.11
22 3 0.05
23 13 0.24
24 23 0.42
25 6 0.11
26 4 0.07
ACGTcount: A:0.15, C:0.04, G:0.06, T:0.75
Consensus pattern (22 bp):
TTTTTTTATTTGTTTTATTTAT
Found at i:24304961 original size:28 final size:28
Alignment explanation
Indices: 24304907--24304961 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
24304897 CTTTTTTAGT
* *
24304907 TTTTATTTATTTATTTTTCCTTTATTTG
1 TTTTATTTATTTATTTTTCATTGATTTG
*
24304935 TTTTATTTATTTGTTTATT-ATTGATTT
1 TTTTATTTATTTATTT-TTCATTGATTT
24304962 TATAATATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 21 0.91
29 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.05, T:0.75
Consensus pattern (28 bp):
TTTTATTTATTTATTTTTCATTGATTTG
Found at i:24304984 original size:13 final size:13
Alignment explanation
Indices: 24304966--24304991 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
24304956 TGATTTTATA
24304966 ATATTTTAAATGT
1 ATATTTTAAATGT
24304979 ATATTTTAAATGT
1 ATATTTTAAATGT
24304992 TTTCTAATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.08, T:0.54
Consensus pattern (13 bp):
ATATTTTAAATGT
Found at i:24305237 original size:22 final size:21
Alignment explanation
Indices: 24305212--24305279 Score: 73
Period size: 22 Copynumber: 3.1 Consensus size: 21
24305202 TTTTATAATC
*
24305212 TTTTAAATGTATATTTTAAAAA
1 TTTTAAATATAT-TTTTAAAAA
* *
24305234 TTTTAAAATTTATTTTTTAAAA
1 TTTT-AAATATATTTTTAAAAA
*
24305256 TTTTAAATATAATTTTTTAAAA
1 TTTTAAATAT-ATTTTTAAAAA
24305278 TT
1 TT
24305280 ATTTTTAAAG
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
21 5 0.12
22 29 0.71
23 7 0.17
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (21 bp):
TTTTAAATATATTTTTAAAAA
Found at i:24312194 original size:44 final size:44
Alignment explanation
Indices: 24312143--24312356 Score: 304
Period size: 44 Copynumber: 4.9 Consensus size: 44
24312133 TTGAAGTAAA
*
24312143 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCAGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCAGTCC
* *
24312187 AATTGTTGATTAAATGCTGTCCAAATGTTGATTTAATGCAATCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCAGTCC
* * * **
24312231 AATTGTTGATTAAATGTTGTCTAAATATTGATTGAATGTTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCAGTCC
* * *
24312275 AATTGTTGATTAAATGTTGTCCAAATGTTGATTTAATGCTGTCC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCAGTCC
* *
24312319 AATTG-TGATTGAATGCTGTCCAAATGTTGATTAAATGC
1 AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGC
24312357 TGTCTGAATG
Statistics
Matches: 153, Mismatches: 17, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
43 30 0.20
44 123 0.80
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40
Consensus pattern (44 bp):
AATTGTTGATTAAATGCTGTCCAAATGTTGATTGAATGCAGTCC
Found at i:24312255 original size:11 final size:11
Alignment explanation
Indices: 24312241--24312304 Score: 51
Period size: 11 Copynumber: 5.8 Consensus size: 11
24312231 AATTGTTGAT
24312241 TAAATGTTGTC
1 TAAATGTTGTC
*
24312252 TAAATATTGAT-
1 TAAATGTTG-TC
*
24312263 TGAATGTTGTC
1 TAAATGTTGTC
* *
24312274 CAATTGTTGAT-
1 TAAATGTTG-TC
24312285 TAAATGTTGTC
1 TAAATGTTGTC
*
24312296 CAAATGTTG
1 TAAATGTTG
24312305 ATTTAATGCT
Statistics
Matches: 40, Mismatches: 9, Indels: 8
0.70 0.16 0.14
Matches are distributed among these distances:
10 2 0.05
11 36 0.90
12 2 0.05
ACGTcount: A:0.30, C:0.08, G:0.19, T:0.44
Consensus pattern (11 bp):
TAAATGTTGTC
Found at i:24312296 original size:88 final size:88
Alignment explanation
Indices: 24312143--24312360 Score: 339
Period size: 88 Copynumber: 2.5 Consensus size: 88
24312133 TTGAAGTAAA
*
24312143 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCAGTCCAATTGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
24312208 CAAATGTTGATTTAATGCAATCC
66 CAAATGTTGATTTAATGCAATCC
* * * *
24312231 AATTGTTGATTAAATGTTGTCTAAATATTGATTGAATGTTGTCCAATTGTTGATTAAATGTTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
**
24312296 CAAATGTTGATTTAATGCTGTCC
66 CAAATGTTGATTTAATGCAATCC
* * *
24312319 AATTG-TGATTGAATGCTGTCCAAATGTTGATTAAATGCTGTC
1 AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTC
24312361 TGAATGTTGG
Statistics
Matches: 117, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
87 31 0.26
88 86 0.74
ACGTcount: A:0.30, C:0.11, G:0.18, T:0.40
Consensus pattern (88 bp):
AATTGTTGATTAAATGCTGTCCAAATATTGATTGAATGCTGTCCAATTGTTGATTAAATGCTGTC
CAAATGTTGATTTAATGCAATCC
Done.