Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 76 of 163
Found at i:24680293 original size:29 final size:28
Alignment explanation
Indices: 24680243--24680315 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
24680233 TAGAGTCTCG
*
24680243 CCACAAAGG-TGTCCTTT-AAGAGGTTTA
1 CCACAAAGGTTGT-CTTTCTAGAGGTTTA
** * *
24680270 CCATGAAGGCTTGTCTTTCTAGAGTTTTG
1 CCACAAAGG-TTGTCTTTCTAGAGGTTTA
24680299 CCACAAAGGTTGTCTTT
1 CCACAAAGGTTGTCTTT
24680316 TTACAAGTGT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
27 7 0.19
28 12 0.33
29 17 0.47
ACGTcount: A:0.23, C:0.19, G:0.22, T:0.36
Consensus pattern (28 bp):
CCACAAAGGTTGTCTTTCTAGAGGTTTA
Found at i:24681958 original size:28 final size:27
Alignment explanation
Indices: 24681919--24681996 Score: 72
Period size: 28 Copynumber: 2.8 Consensus size: 27
24681909 AAAAACCTTA
24681919 AAAAATCT-TTAAAATTGAAAAAAATA-
1 AAAAAT-TATTAAAATTGAAAAAAATAG
*
24681945 AAAGAATTACTTAAAAATT-AAAAAACTAG
1 AAA-AATTA-TT-AAAATTGAAAAAAATAG
*
24681974 AAAAATTATTAAAACTAGAAAAA
1 AAAAATTATTAAAA-TTGAAAAA
24681997 TTATAAAATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
26 8 0.19
27 6 0.14
28 20 0.47
29 9 0.21
ACGTcount: A:0.65, C:0.05, G:0.05, T:0.24
Consensus pattern (27 bp):
AAAAATTATTAAAATTGAAAAAAATAG
Found at i:24681979 original size:17 final size:18
Alignment explanation
Indices: 24681957--24682004 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
24681947 AGAATTACTT
24681957 AAAAATTA-AAAAACTAG
1 AAAAATTATAAAAACTAG
*
24681974 AAAAATTATTAAAACTAG
1 AAAAATTATAAAAACTAG
24681992 AAAAATTATAAAA
1 AAAAATTATAAAA
24682005 TTATAGAAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
17 8 0.29
18 20 0.71
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (18 bp):
AAAAATTATAAAAACTAG
Found at i:24682004 original size:9 final size:9
Alignment explanation
Indices: 24681956--24682042 Score: 54
Period size: 9 Copynumber: 9.4 Consensus size: 9
24681946 AAGAATTACT
24681956 TAAAAATTA
1 TAAAAATTA
*
24681965 -AAAAACTA
1 TAAAAATTA
*
24681973 GAAAAATTA
1 TAAAAATTA
* *
24681982 TTAAAACTA
1 TAAAAATTA
*
24681991 GAAAAATTA
1 TAAAAATTA
24682000 T-AAAATTA
1 TAAAAATTA
*
24682008 TAGAAAAAAATA
1 T---AAAAATTA
24682020 TAACAAA-TA
1 TAA-AAATTA
24682029 TAAAAATTA
1 TAAAAATTA
24682038 CTAAA
1 -TAAA
24682043 TATATTAGAA
Statistics
Matches: 60, Mismatches: 10, Indels: 15
0.71 0.12 0.18
Matches are distributed among these distances:
8 18 0.30
9 28 0.47
10 7 0.12
12 7 0.12
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.25
Consensus pattern (9 bp):
TAAAAATTA
Found at i:24682034 original size:20 final size:20
Alignment explanation
Indices: 24681992--24682034 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
24681982 TTAAAACTAG
* *
24681992 AAAAATTATAAAATTATAGA
1 AAAAAATATAAAAATATAGA
24682012 AAAAAATATAACAAATATA-A
1 AAAAAATATAA-AAATATAGA
24682032 AAA
1 AAA
24682035 TTACTAAATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAAATATAAAAATATAGA
Found at i:24682595 original size:94 final size:89
Alignment explanation
Indices: 24682334--24682653 Score: 352
Period size: 88 Copynumber: 3.6 Consensus size: 89
24682324 AAAAACTCTC
* * * *
24682334 AAACTTTTCCAAAAAAAGTAATTAAGCCC-CTGC--TTTTTTGCACTCAATTGGATACTTAAACT
1 AAACTTTTTCAAAAATAGAAATTAAGCCCTCTTCTTTTTTTTGCACTCAATTGGATACTTAAACT
*
24682396 TTCAAAATGCATCAAAAAGGCCTT
66 TTCAAAATGCATCAAAAAGGCCAT
*
24682420 AAACTTTTTCAAAAATAGAAATTAAG-CCTCTTCTTTTTTTCGCACTCAATTGGATACTTAAACT
1 AAACTTTTTCAAAAATAGAAATTAAGCCCTCTTCTTTTTTTTGCACTCAATTGGATACTTAAACT
*
24682484 TTCAAAATGCATCAAAAAGGCCCT
66 TTCAAAATGCATCAAAAAGGCCAT
* * *
24682508 AAACTTTTTCAAAAATAGAAATTAAGCCTCTGCTCTCTTTTTTTTTTACACTTAATTGGGTACTT
1 AAACTTTTTCAAAAATAGAAATTAAGCC-CT-CT-TC--TTTTTTTTGCACTCAATTGGATACTT
* * **
24682573 GAA-TTGCCAAAATGCAT-AAAAAAACCAT
61 AAACTT-TCAAAATGCATCAAAAAGGCCAT
* *
24682601 CAAAC-TTTTCAAAAA-AGCAATTAAGCCC-CTAATTTTTTTTTTGCACTCAATTG
1 -AAACTTTTTCAAAAATAGAAATTAAGCCCTCT--TCTTTTTTTTGCACTCAATTG
24682654 CCAAAATGCA
Statistics
Matches: 202, Mismatches: 20, Indels: 22
0.83 0.08 0.09
Matches are distributed among these distances:
85 2 0.01
86 26 0.13
88 94 0.47
89 3 0.01
90 3 0.01
91 3 0.01
92 13 0.06
93 20 0.10
94 38 0.19
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (89 bp):
AAACTTTTTCAAAAATAGAAATTAAGCCCTCTTCTTTTTTTTGCACTCAATTGGATACTTAAACT
TTCAAAATGCATCAAAAAGGCCAT
Found at i:24682851 original size:30 final size:30
Alignment explanation
Indices: 24682801--24682873 Score: 87
Period size: 30 Copynumber: 2.5 Consensus size: 30
24682791 AAAGATCAAT
*
24682801 AAAAGTTATAAAAATTATTAAATTTTAATA
1 AAAAGTTATAAAAATAATTAAATTTTAATA
* *
24682831 AAAAG-TATAAGAAATAATTAATTTTTATTA
1 AAAAGTTATAA-AAATAATTAAATTTTAATA
*
24682861 AAAA-TTAGAAAAA
1 AAAAGTTATAAAAA
24682874 GATTATAAAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 8 0.22
30 29 0.78
ACGTcount: A:0.59, C:0.00, G:0.05, T:0.36
Consensus pattern (30 bp):
AAAAGTTATAAAAATAATTAAATTTTAATA
Found at i:24683331 original size:21 final size:21
Alignment explanation
Indices: 24683290--24683332 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
24683280 ATTATAAAAC
* * *
24683290 ATAAAAATGTAAAATTTTATA
1 ATAAAAAGGTAAAAATATATA
24683311 ATAAAAAGGTAAAAATATATA
1 ATAAAAAGGTAAAAATATATA
24683332 A
1 A
24683333 AATATATAGA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (21 bp):
ATAAAAAGGTAAAAATATATA
Found at i:24683410 original size:19 final size:21
Alignment explanation
Indices: 24683388--24683433 Score: 62
Period size: 20 Copynumber: 2.3 Consensus size: 21
24683378 TAAGAAAATG
24683388 ATAAAAAAT-AT-AAAGAATT
1 ATAAAAAATCATAAAAGAATT
*
24683407 AT-AAAATTCATAAAAGAATT
1 ATAAAAAATCATAAAAGAATT
24683427 ATAAAAA
1 ATAAAAA
24683434 TTATCATATC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 5 0.22
19 4 0.17
20 10 0.43
21 4 0.17
ACGTcount: A:0.67, C:0.02, G:0.04, T:0.26
Consensus pattern (21 bp):
ATAAAAAATCATAAAAGAATT
Found at i:24683435 original size:9 final size:9
Alignment explanation
Indices: 24683382--24683437 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
24683372 AAGTCGTAAG
*
24683382 AAAATGATA
1 AAAATTATA
*
24683391 AAAAATATA
1 AAAATTATA
24683400 AAGAATTAT-
1 AA-AATTATA
24683409 AAAATTCATAA
1 AAAATT-AT-A
24683420 AAGAATTATA
1 AA-AATTATA
24683430 AAAATTAT
1 AAAATTAT
24683438 CATATCATAA
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
8 4 0.10
9 19 0.49
10 8 0.21
11 4 0.10
12 4 0.10
ACGTcount: A:0.64, C:0.02, G:0.05, T:0.29
Consensus pattern (9 bp):
AAAATTATA
Found at i:24683470 original size:11 final size:11
Alignment explanation
Indices: 24683454--24683483 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
24683444 ATAAGAAGCA
24683454 TTTTATAATTT
1 TTTTATAATTT
24683465 TTTTATAATTT
1 TTTTATAATTT
*
24683476 TTCTATAA
1 TTTTATAA
24683484 CTTCTATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (11 bp):
TTTTATAATTT
Found at i:24683639 original size:10 final size:10
Alignment explanation
Indices: 24683626--24683677 Score: 52
Period size: 10 Copynumber: 5.2 Consensus size: 10
24683616 TTTTGATGTA
24683626 TTTTATAATT
1 TTTTATAATT
*
24683636 TTTTATGA-T
1 TTTTATAATT
**
24683645 TTTTATAAAA
1 TTTTATAATT
*
24683655 TTTTAGAATT
1 TTTTATAATT
24683665 TTTTATATATT
1 TTTTATA-ATT
24683676 TT
1 TT
24683678 ACAATTTATA
Statistics
Matches: 33, Mismatches: 7, Indels: 3
0.77 0.16 0.07
Matches are distributed among these distances:
9 8 0.24
10 20 0.61
11 5 0.15
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (10 bp):
TTTTATAATT
Found at i:24683657 original size:29 final size:28
Alignment explanation
Indices: 24683625--24683764 Score: 112
Period size: 29 Copynumber: 5.0 Consensus size: 28
24683615 TTTTTGATGT
24683625 ATTTTATAATTTTTTATGATTTTTATAAA
1 ATTTTATAATTTTTTAT-ATTTTTATAAA
* * *
24683654 ATTTTAGAATTTTTTATATATTT-TACA
1 ATTTTATAATTTTTTATATTTTTATAAA
24683681 A-TTTATATATTTTTCTA-ATTTTTAGT-AA
1 ATTTTATA-ATTTTT-TATATTTTTA-TAAA
* *
24683709 ATTTTAAATATTCTTTTATATTTTTGTTAAA
1 ATTTTATA-ATT-TTTTATATTTTT-ATAAA
* *
24683740 GTTTAATAA-TTTTTAT-TTTTTATAA
1 ATTTTATAATTTTTTATATTTTTATAA
24683765 TTTTTGTCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 21
0.73 0.10 0.17
Matches are distributed among these distances:
26 8 0.09
27 20 0.22
28 15 0.17
29 29 0.32
30 11 0.12
31 7 0.08
ACGTcount: A:0.33, C:0.02, G:0.04, T:0.61
Consensus pattern (28 bp):
ATTTTATAATTTTTTATATTTTTATAAA
Found at i:24683665 original size:19 final size:20
Alignment explanation
Indices: 24683643--24683690 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
24683633 ATTTTTTATG
*
24683643 ATTTTTATA-AAATTTTAGA
1 ATTTTTATATAAATTTTACA
*
24683662 ATTTTT-TATATATTTTACA
1 ATTTTTATATAAATTTTACA
*
24683681 ATTTATATAT
1 ATTTTTATAT
24683691 TTTTCTAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
18 2 0.08
19 19 0.79
20 3 0.12
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (20 bp):
ATTTTTATATAAATTTTACA
Found at i:24683711 original size:55 final size:55
Alignment explanation
Indices: 24683627--24683733 Score: 132
Period size: 55 Copynumber: 1.9 Consensus size: 55
24683617 TTTGATGTAT
*
24683627 TTTATAATTTTTTATGATTTTTATAAAATTTTAGA-ATT-TTTTATATATTTTACAA
1 TTTATAATTTTTTA-GATTTTTATAAAATTTTAAATATTCTTTTATAT-TTTTACAA
24683682 TTTATATATTTTTCTA-ATTTTTAGT-AAATTTTAAATATTCTTTTATATTTTT
1 TTTATA-ATTTTT-TAGATTTTTA-TAAAATTTTAAATATTCTTTTATATTTTT
24683734 GTTAAAGTTT
Statistics
Matches: 46, Mismatches: 1, Indels: 9
0.82 0.02 0.16
Matches are distributed among these distances:
55 22 0.48
56 14 0.30
57 10 0.22
ACGTcount: A:0.32, C:0.03, G:0.03, T:0.63
Consensus pattern (55 bp):
TTTATAATTTTTTAGATTTTTATAAAATTTTAAATATTCTTTTATATTTTTACAA
Found at i:24684002 original size:89 final size:87
Alignment explanation
Indices: 24683891--24684133 Score: 238
Period size: 89 Copynumber: 2.7 Consensus size: 87
24683881 TGCATTTTTG
* * * * *
24683891 CCAATTGAGTACAAAAAGAGCAGGGGCTTAATTGCTTGTTTTGAAAAATTTTGAGGGTATTTTTG
1 CCAATTGACTGCAAAAAAAGCAGGGGCTTAATTGCTT-TTTTAAAAAATTTTGAGGGCATTTTTG
* *
24683956 ATGCATTTTGACAGTTCAAGTAC
65 ATGCATTTTGAAACTTCAAGTAC
**** * *
24683979 CCAATTGACTAAG-AAAAAAAGCAGGGGCTTAATTGCTTTTTTTTTTAATGTTTGAAGGCCTTTT
1 CCAATTGACT--GCAAAAAAAGCAGGGGCTTAATTGCTTTTTTAAAAAAT-TTTGAGGGCATTTT
*
24684043 TGATGCATTTTGAAACTTCAAGTGC
63 TGATGCATTTTGAAACTTCAAGTAC
* * * *
24684068 CTAATTGAGTGCAAAAAAAGGGAGGGGGGCTTAATTGCTTTTTTAAAAAAAGTTTGAGGGC-TTT
1 CCAATTGACTGCAAAAAAA-GCA--GGGGCTTAATTGCTTTTTT-AAAAAATTTTGAGGGCATTT
24684132 TT
62 TT
24684134 ACACTCTTAA
Statistics
Matches: 125, Mismatches: 22, Indels: 14
0.78 0.14 0.09
Matches are distributed among these distances:
87 1 0.01
88 23 0.18
89 67 0.54
90 5 0.04
91 27 0.22
92 2 0.02
ACGTcount: A:0.30, C:0.11, G:0.23, T:0.36
Consensus pattern (87 bp):
CCAATTGACTGCAAAAAAAGCAGGGGCTTAATTGCTTTTTTAAAAAATTTTGAGGGCATTTTTGA
TGCATTTTGAAACTTCAAGTAC
Found at i:24684202 original size:18 final size:17
Alignment explanation
Indices: 24684157--24684202 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 17
24684147 TTTTAAAATA
24684157 ATTTTTAGAATTTTTTAT
1 ATTTTTA-AATTTTTTAT
*
24684175 TTTTTGTAAATTTTATTAT
1 ATTTT-TAAATTTT-TTAT
24684194 ATTTTTAAA
1 ATTTTTAAA
24684203 ATATTTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
18 14 0.58
19 10 0.42
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.65
Consensus pattern (17 bp):
ATTTTTAAATTTTTTAT
Found at i:24684204 original size:19 final size:18
Alignment explanation
Indices: 24684157--24684211 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 18
24684147 TTTTAAAATA
*
24684157 ATTTTTAGAATTTTTTAT
1 ATTTTTAAAATTTTTTAT
*
24684175 -TTTTTGTAAATTTTATTAT
1 ATTTTT-AAAATTTT-TTAT
24684194 ATTTTTAAAATATTTTTA
1 ATTTTTAAAAT-TTTTTA
24684212 ATGGTTTTTC
Statistics
Matches: 30, Mismatches: 3, Indels: 7
0.75 0.08 0.17
Matches are distributed among these distances:
17 5 0.17
18 6 0.20
19 11 0.37
20 8 0.27
ACGTcount: A:0.31, C:0.00, G:0.04, T:0.65
Consensus pattern (18 bp):
ATTTTTAAAATTTTTTAT
Found at i:24686269 original size:46 final size:46
Alignment explanation
Indices: 24686063--24686319 Score: 256
Period size: 46 Copynumber: 5.6 Consensus size: 46
24686053 GATCAGAGGG
* * * * * *
24686063 TGCCATGGTGTCTTTCAA-TCATGGTCTTATTTATTCT-CGACTTGA
1 TGCCATAGTGTCTTTCAACT-ATGGTCTTATTCATTTTCCGTCGTGT
* * * *
24686108 TGCCATAGTGTCTTTCTACCATGTTCTTATTCATTTTCCGTTGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * *
24686154 TTCCATAGTGCCTTTCAACTATGGTCTTATTCATTTTCCGTCATGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * *
24686200 TGCCATAGCGTCTTTCAACTATGGTTTTATTCATTTTCCGCCGTGT
1 TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
* * *
24686246 TGCCATAGTGTCTTTCAACTATGG-CATTATTTA-TTT-C-TAGTAT
1 TGCCATAGTGTCTTTCAACTATGGTC-TTATTCATTTTCCGTCGTGT
*
24686289 AGTGTCATAGTGTCTTTCAACTATGGTCTTA
1 --TGCCATAGTGTCTTTCAACTATGGTCTTA
24686320 ATAATTTCCT
Statistics
Matches: 176, Mismatches: 30, Indels: 12
0.81 0.14 0.06
Matches are distributed among these distances:
43 3 0.02
44 1 0.01
45 59 0.34
46 113 0.64
ACGTcount: A:0.18, C:0.21, G:0.16, T:0.46
Consensus pattern (46 bp):
TGCCATAGTGTCTTTCAACTATGGTCTTATTCATTTTCCGTCGTGT
Found at i:24708649 original size:24 final size:24
Alignment explanation
Indices: 24708602--24708649 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
24708592 TCGTTCTGTG
* **
24708602 GCAAAGGATGAATTGACGGTAAAT
1 GCAAAGGATGAATTAACGACAAAT
24708626 GCAAAGGATGAATTAACGACAAAT
1 GCAAAGGATGAATTAACGACAAAT
24708650 CACCCAAGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.10, G:0.25, T:0.19
Consensus pattern (24 bp):
GCAAAGGATGAATTAACGACAAAT
Found at i:24713215 original size:50 final size:50
Alignment explanation
Indices: 24713097--24713237 Score: 174
Period size: 50 Copynumber: 2.8 Consensus size: 50
24713087 GATAATAACA
* ** *
24713097 TGCCAAAGTCATGTCCCAGACATGGTCTTACATGGGATTTTCTCATGTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCATCTCGG
* * ** **
24713148 TGCCCATGCCAAATCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGG
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
*
24713198 TGCCAACGCCATGTCCCAGACATGGTCTTACATGGGACCT
1 TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCT
24713238 NNNNNNNNNN
Statistics
Matches: 74, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
50 44 0.59
51 30 0.41
ACGTcount: A:0.21, C:0.30, G:0.23, T:0.26
Consensus pattern (50 bp):
TGCCAAAGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTCGG
Found at i:24715117 original size:14 final size:15
Alignment explanation
Indices: 24715098--24715148 Score: 54
Period size: 14 Copynumber: 3.5 Consensus size: 15
24715088 AGGTAGTGGG
24715098 ATTTTTTTTC-TTCT
1 ATTTTTTTTCGTTCT
*
24715112 A-TTTTTTTCTTTCT
1 ATTTTTTTTCGTTCT
*
24715126 -TTTTCTTTCGTTCTT
1 ATTTTTTTTCGTTC-T
24715141 ATTTTTTT
1 ATTTTTTT
24715149 AGAAGGAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
13 8 0.27
14 15 0.50
15 1 0.03
16 6 0.20
ACGTcount: A:0.06, C:0.14, G:0.02, T:0.78
Consensus pattern (15 bp):
ATTTTTTTTCGTTCT
Found at i:24723384 original size:89 final size:89
Alignment explanation
Indices: 24723291--24723461 Score: 315
Period size: 89 Copynumber: 1.9 Consensus size: 89
24723281 TTCAAGAATC
24723291 AAGAAAACCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCGAATCTTGCAGCTAAGGCG
1 AAGAAAACCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCGAATCTTGCAGCTAAGGCG
24723356 CATTGGATCTCAGTTACCAGGAAA
66 CATTGGATCTCAGTTACCAGGAAA
* *
24723380 AAGAAAATCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAATCGAATCTTGCAGCTAAGGCG
1 AAGAAAACCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCGAATCTTGCAGCTAAGGCG
*
24723445 CATTTGATCTCAGTTAC
66 CATTGGATCTCAGTTAC
24723462 GAGCATCAAC
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
89 79 1.00
ACGTcount: A:0.36, C:0.20, G:0.19, T:0.24
Consensus pattern (89 bp):
AAGAAAACCAAGATTTCAAATCTTGGAAATCTTGGCCCAAGAAACCGAATCTTGCAGCTAAGGCG
CATTGGATCTCAGTTACCAGGAAA
Found at i:24726601 original size:19 final size:19
Alignment explanation
Indices: 24726577--24726623 Score: 85
Period size: 19 Copynumber: 2.5 Consensus size: 19
24726567 TGTTATGGGA
24726577 AAGAATATTAAAAATTAGG
1 AAGAATATTAAAAATTAGG
*
24726596 AAGAATATTAAAAATTGGG
1 AAGAATATTAAAAATTAGG
24726615 AAGAATATT
1 AAGAATATT
24726624 TGCCATTTGT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.55, C:0.00, G:0.17, T:0.28
Consensus pattern (19 bp):
AAGAATATTAAAAATTAGG
Found at i:24727381 original size:25 final size:25
Alignment explanation
Indices: 24727352--24727402 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
24727342 GGAAATCTTG
*
24727352 ATCCAAGAAATCGAATCTTGCAACT
1 ATCCAAGAAACCGAATCTTGCAACT
24727377 ATCCAAGAAACCGAATCTTGCAACT
1 ATCCAAGAAACCGAATCTTGCAACT
24727402 A
1 A
24727403 AGGCGCATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.41, C:0.25, G:0.12, T:0.22
Consensus pattern (25 bp):
ATCCAAGAAACCGAATCTTGCAACT
Found at i:24728054 original size:13 final size:13
Alignment explanation
Indices: 24728036--24728060 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
24728026 GAATTTACTT
24728036 GTGTGAAAATTTC
1 GTGTGAAAATTTC
24728049 GTGTGAAAATTT
1 GTGTGAAAATTT
24728061 TATCGTTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.04, G:0.24, T:0.40
Consensus pattern (13 bp):
GTGTGAAAATTTC
Found at i:24729180 original size:65 final size:65
Alignment explanation
Indices: 24729025--24729269 Score: 144
Period size: 65 Copynumber: 3.7 Consensus size: 65
24729015 TTGTATAAAA
* * * * **
24729025 ATGTTAGCCGAATGTATATATATGTTTTGAATTTTATAAGTTAAAATTAAA-TGTATAAATTGTA
1 ATGTTAGCCGAA-GTATATATAT-ATTTGAGTTTTATAAG-TAAAATGAAATTGAATAAATTACA
24729089 TAT
63 TAT
* * * * *
24729092 AT-ATATG-TGTTAGTCA-ATGTATATTTGAGTTTTATAAGATAAAAT-AAATTGCATAAATT-C
1 ATGTTA-GCCG-AAGT-ATATATATATTTGAGTTTTATAAG-TAAAATGAAATTGAATAAATTAC
24729152 TATAT
62 -ATAT
* * * ** * *
24729157 ATATTTAGCCGAA-TATATATATATGCTGAGTTTTGTAAGTTGAATGAAATTTAATGAATTACAT
1 AT-GTTAGCCGAAGTATATATATAT-TTGAGTTTTATAAGTAAAATGAAATTGAATAAATTACAT
24729221 AT
64 AT
* *
24729223 ATGTTAGCCGAATGTATATATATGTTTTGAATTTTATAAGTTAAAAT
1 ATGTTAGCCGAA-GTATATATAT-ATTTGAGTTTTATAAG-TAAAAT
24729270 NNNNNNNNNN
Statistics
Matches: 135, Mismatches: 27, Indels: 31
0.70 0.14 0.16
Matches are distributed among these distances:
64 4 0.03
65 56 0.41
66 41 0.30
67 29 0.21
68 5 0.04
ACGTcount: A:0.38, C:0.04, G:0.14, T:0.43
Consensus pattern (65 bp):
ATGTTAGCCGAAGTATATATATATTTGAGTTTTATAAGTAAAATGAAATTGAATAAATTACATAT
Found at i:24731777 original size:14 final size:14
Alignment explanation
Indices: 24731758--24731785 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
24731748 GAGACCATTG
24731758 ATTTAAGTATTTAA
1 ATTTAAGTATTTAA
24731772 ATTTAAGTATTTAA
1 ATTTAAGTATTTAA
24731786 TGATTTGATA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
ATTTAAGTATTTAA
Found at i:24739409 original size:21 final size:21
Alignment explanation
Indices: 24739385--24739429 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
24739375 TTAAACAGAT
24739385 TTTTATATATTTTAA-AATATA
1 TTTTATAT-TTTTAATAATATA
* *
24739406 TTTTTTATTTTTAATAATTTA
1 TTTTATATTTTTAATAATATA
24739427 TTT
1 TTT
24739430 ACTCGAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 6 0.29
21 15 0.71
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (21 bp):
TTTTATATTTTTAATAATATA
Found at i:24741182 original size:15 final size:15
Alignment explanation
Indices: 24741162--24741208 Score: 58
Period size: 15 Copynumber: 3.0 Consensus size: 15
24741152 TAAAACGGTC
*
24741162 TATATTTTTATAATA
1 TATATTTTAATAATA
24741177 TATATTTGTAATATATA
1 TATATTT-TAATA-ATA
*
24741194 TAAATTTTAATAATA
1 TATATTTTAATAATA
24741209 CTTTTTACGT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
15 10 0.36
16 9 0.32
17 9 0.32
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (15 bp):
TATATTTTAATAATA
Found at i:24746749 original size:23 final size:23
Alignment explanation
Indices: 24746723--24746767 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
24746713 GAGAAATCTG
24746723 TATGTATAGGTATAAAATGTGCT
1 TATGTATAGGTATAAAATGTGCT
*
24746746 TATGTATATGTATAAAATGTGC
1 TATGTATAGGTATAAAATGTGC
24746768 AGACTTCATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.36, C:0.04, G:0.20, T:0.40
Consensus pattern (23 bp):
TATGTATAGGTATAAAATGTGCT
Found at i:24751592 original size:46 final size:45
Alignment explanation
Indices: 24751536--24751641 Score: 149
Period size: 46 Copynumber: 2.3 Consensus size: 45
24751526 CTCACTTCCG
* * *
24751536 TCATGATGCCATAGCATATTTCAGCTATGGTTTTACTCGTTTTAA
1 TCATGTTGCCATAGCATATTTCAACTATGGTCTTACTCGTTTTAA
** *
24751581 TTCATGTTGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTAA
1 -TCATGTTGCCATAGCATATTTCAACTATGGTCTTACTCGTTTTAA
24751627 TCATGTTGCCATAGC
1 TCATGTTGCCATAGC
24751642 GTCTTCTAGT
Statistics
Matches: 53, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
45 14 0.26
46 39 0.74
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (45 bp):
TCATGTTGCCATAGCATATTTCAACTATGGTCTTACTCGTTTTAA
Found at i:24751646 original size:45 final size:45
Alignment explanation
Indices: 24751536--24751675 Score: 174
Period size: 45 Copynumber: 3.1 Consensus size: 45
24751526 CTCACTTCCG
* * * *
24751536 TCATGATGCCATAGCATATTTCAGCTATGGTTTTACTCGTTTTAA
1 TCATGTTGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAA
* *
24751581 TTCATGTTGCCATAGTGTCTTTCAACTATGGTCTTACTCGTTTTAA
1 -TCATGTTGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAA
* * *
24751627 TCATGTTGCCATAGCGTC-TTCTAGTTATGGTCTTACTTGTGTTAA
1 TCATGTTGCCATAGCGTCTTTC-AGCTATGGTCTTACTCGTTTTAA
24751672 TCAT
1 TCAT
24751676 ATTTACGGTA
Statistics
Matches: 82, Mismatches: 11, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
44 3 0.04
45 40 0.49
46 39 0.48
ACGTcount: A:0.21, C:0.19, G:0.16, T:0.44
Consensus pattern (45 bp):
TCATGTTGCCATAGCGTCTTTCAGCTATGGTCTTACTCGTTTTAA
Found at i:24755438 original size:25 final size:25
Alignment explanation
Indices: 24755406--24755469 Score: 83
Period size: 25 Copynumber: 2.6 Consensus size: 25
24755396 AGGTCATTTT
24755406 ACAACTCGTGTGAGCATTTACAATC
1 ACAACTCGTGTGAGCATTTACAATC
* * **
24755431 ACAGCTCGTCTGAGCATTTACCGTC
1 ACAACTCGTGTGAGCATTTACAATC
*
24755456 ACAACTTGTGTGAG
1 ACAACTCGTGTGAG
24755470 TATTGTTCCA
Statistics
Matches: 32, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (25 bp):
ACAACTCGTGTGAGCATTTACAATC
Found at i:24755572 original size:26 final size:26
Alignment explanation
Indices: 24755543--24755600 Score: 75
Period size: 26 Copynumber: 2.2 Consensus size: 26
24755533 ATGGTTATTC
*
24755543 GAAATGGATA-TATGAAAT-AAACATTT
1 GAAATGGATACT-TGAAATGAAA-ATGT
24755569 GAAATGGATACTTGAAATGAAAATGT
1 GAAATGGATACTTGAAATGAAAATGT
24755595 GAAATG
1 GAAATG
24755601 TGAAATGGAT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.48, C:0.03, G:0.21, T:0.28
Consensus pattern (26 bp):
GAAATGGATACTTGAAATGAAAATGT
Found at i:24761168 original size:25 final size:25
Alignment explanation
Indices: 24761087--24761168 Score: 58
Period size: 25 Copynumber: 3.3 Consensus size: 25
24761077 GGTATGTCCA
*
24761087 TACGAGCATGTA-ATTGGAAAGCTCT
1 TACGAGC-TGTATAATGGAAAGCTCT
* ** * * **
24761112 TTCGAGCCATGTAATGGGAAGCTAA
1 TACGAGCTGTATAATGGAAAGCTCT
**
24761137 TGTGAGCTGTATAATGGAAAGCTCT
1 TACGAGCTGTATAATGGAAAGCTCT
24761162 TACGAGC
1 TACGAGC
24761169 CAATTATCAG
Statistics
Matches: 38, Mismatches: 18, Indels: 2
0.66 0.31 0.03
Matches are distributed among these distances:
24 1 0.03
25 37 0.97
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.27
Consensus pattern (25 bp):
TACGAGCTGTATAATGGAAAGCTCT
Found at i:24761193 original size:25 final size:25
Alignment explanation
Indices: 24761165--24761346 Score: 163
Period size: 25 Copynumber: 7.3 Consensus size: 25
24761155 AAGCTCTTAC
* * *
24761165 GAGCCAATTATCAGGAAGCTCATGT
1 GAGCCAATTATCGGGAAGCTCGTGA
*
24761190 GAGCC-ATATATCGAGAAGCTCGTGA
1 GAGCCAAT-TATCGGGAAGCTCGTGA
* **
24761215 GAGCCATATAAT-GGGAAGCTCAAGA
1 GAGCCA-ATTATCGGGAAGCTCGTGA
* *
24761240 GAG-CTATTAATCGGGAAGCTCATGA
1 GAGCCAATT-ATCGGGAAGCTCGTGA
* * * * *
24761265 GAGCTAAATAACGGCAAGCTTGTGA
1 GAGCCAATTATCGGGAAGCTCGTGA
*
24761290 GAGCCAAGTATCGGGAAGCTCGTGA
1 GAGCCAATTATCGGGAAGCTCGTGA
* *
24761315 GAGCCAAGTATCAGGAAGCTCGTGA
1 GAGCCAATTATCGGGAAGCTCGTGA
24761340 GAGCCAA
1 GAGCCAA
24761347 ACACCCGGAT
Statistics
Matches: 127, Mismatches: 24, Indels: 12
0.78 0.15 0.07
Matches are distributed among these distances:
23 2 0.02
24 5 0.04
25 114 0.90
26 4 0.03
27 2 0.02
ACGTcount: A:0.34, C:0.19, G:0.29, T:0.19
Consensus pattern (25 bp):
GAGCCAATTATCGGGAAGCTCGTGA
Found at i:24761360 original size:25 final size:25
Alignment explanation
Indices: 24761253--24761360 Score: 74
Period size: 25 Copynumber: 4.3 Consensus size: 25
24761243 CTATTAATCG
* * * *
24761253 GGAAGCTCATGAGAGCTAAATAAC-
1 GGAAGCTCGTGAGAGCCAAACACCA
* ** * *
24761277 GGCAAGCTTGTGAGAGCCAAGTATCG
1 GG-AAGCTCGTGAGAGCCAAACACCA
** *
24761303 GGAAGCTCGTGAGAGCCAAGTATCA
1 GGAAGCTCGTGAGAGCCAAACACCA
*
24761328 GGAAGCTCGTGAGAGCCAAACACCC
1 GGAAGCTCGTGAGAGCCAAACACCA
*
24761353 GGATGCTC
1 GGAAGCTC
24761361 ATAAGAGCTA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
24 2 0.03
25 66 0.94
26 2 0.03
ACGTcount: A:0.31, C:0.22, G:0.31, T:0.16
Consensus pattern (25 bp):
GGAAGCTCGTGAGAGCCAAACACCA
Found at i:24776736 original size:27 final size:27
Alignment explanation
Indices: 24776706--24776799 Score: 116
Period size: 27 Copynumber: 3.5 Consensus size: 27
24776696 CCTTGTAAGT
* * * *
24776706 TAAAATGACCGTAATACCCTCAAAGGA
1 TAAAATTACCGAAATACCCTCGAAGGG
* *
24776733 TAAAATTACCGAAATACCTTCGATGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
*
24776760 TAAAATTACCGAAATACCCCCGAAGGG
1 TAAAATTACCGAAATACCCTCGAAGGG
*
24776787 TAAAATTATCGAA
1 TAAAATTACCGAA
24776800 GTACTCCATA
Statistics
Matches: 57, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.43, C:0.20, G:0.16, T:0.21
Consensus pattern (27 bp):
TAAAATTACCGAAATACCCTCGAAGGG
Found at i:24781477 original size:10 final size:10
Alignment explanation
Indices: 24781462--24781491 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
24781452 TTTTTAATCC
24781462 TTCATTACCA
1 TTCATTACCA
24781472 TTCATTACCA
1 TTCATTACCA
24781482 TTCATTACCA
1 TTCATTACCA
24781492 AAAGTCCCTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.30, C:0.30, G:0.00, T:0.40
Consensus pattern (10 bp):
TTCATTACCA
Found at i:24789401 original size:14 final size:15
Alignment explanation
Indices: 24789374--24789407 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
24789364 ACCCGAATCT
*
24789374 ATTTTTAGGTAAGAA
1 ATTTTGAGGTAAGAA
24789389 ATTTTGAGG-AAGAA
1 ATTTTGAGGTAAGAA
24789403 ATTTT
1 ATTTT
24789408 CTAAGGGGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (15 bp):
ATTTTGAGGTAAGAA
Found at i:24793987 original size:92 final size:92
Alignment explanation
Indices: 24793830--24793997 Score: 336
Period size: 92 Copynumber: 1.8 Consensus size: 92
24793820 ATCCAAAAAG
24793830 TTTTATTGATCTTCCTAAGTAGAAAGCCTTTATCCAAAAAGTTCTTTACCATAATAATGATAATC
1 TTTTATTGATCTTCCTAAGTAGAAAGCCTTTATCCAAAAAGTTCTTTACCATAATAATGATAATC
24793895 GAACCAATTATCCATAGCTTTTTGACA
66 GAACCAATTATCCATAGCTTTTTGACA
24793922 TTTTATTGATCTTCCTAAGTAGAAAGCCTTTATCCAAAAAGTTCTTTACCATAATAATGATAATC
1 TTTTATTGATCTTCCTAAGTAGAAAGCCTTTATCCAAAAAGTTCTTTACCATAATAATGATAATC
24793987 GAACCAATTAT
66 GAACCAATTAT
24793998 GCCCCAGTTA
Statistics
Matches: 76, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
92 76 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.37
Consensus pattern (92 bp):
TTTTATTGATCTTCCTAAGTAGAAAGCCTTTATCCAAAAAGTTCTTTACCATAATAATGATAATC
GAACCAATTATCCATAGCTTTTTGACA
Found at i:24797311 original size:29 final size:29
Alignment explanation
Indices: 24797269--24797331 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 29
24797259 GGCTTATACT
* *
24797269 GTGTGTCCCACACGACCTAGCACACGATC
1 GTGTGTCCCACACGACCTACCACACGACC
* *
24797298 GTGTGTCGCACACGGCCTACCACACGACC
1 GTGTGTCCCACACGACCTACCACACGACC
24797327 GTGTG
1 GTGTG
24797332 GCGTTGATAA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.21, C:0.37, G:0.25, T:0.17
Consensus pattern (29 bp):
GTGTGTCCCACACGACCTACCACACGACC
Found at i:24798199 original size:20 final size:19
Alignment explanation
Indices: 24798170--24798221 Score: 70
Period size: 19 Copynumber: 2.7 Consensus size: 19
24798160 ACAAAAACTT
24798170 AAAAA-ATATAAAATTATAA
1 AAAAATATATAAAATTAT-A
*
24798189 AAAAATTTATAAAATTATA
1 AAAAATATATAAAATTATA
*
24798208 AGAAATATATAAAA
1 AAAAATATATAAAA
24798222 AATCAATACC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
19 18 0.62
20 11 0.38
ACGTcount: A:0.69, C:0.00, G:0.02, T:0.29
Consensus pattern (19 bp):
AAAAATATATAAAATTATA
Found at i:24798222 original size:20 final size:19
Alignment explanation
Indices: 24798170--24798222 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
24798160 ACAAAAACTT
24798170 AAAAAATAT-AAAATTATA
1 AAAAAATATAAAAATTATA
*
24798188 AAAAAATTTATAAAATTATA
1 AAAAAATATA-AAAATTATA
*
24798208 AGAAATATATAAAAA
1 A-AAAAATATAAAAA
24798223 ATCAATACCT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
18 8 0.28
20 14 0.48
21 7 0.24
ACGTcount: A:0.70, C:0.00, G:0.02, T:0.28
Consensus pattern (19 bp):
AAAAAATATAAAAATTATA
Found at i:24807824 original size:19 final size:18
Alignment explanation
Indices: 24807781--24807835 Score: 60
Period size: 19 Copynumber: 3.1 Consensus size: 18
24807771 CATATTTCAA
*
24807781 ATAGGTTCACACATGC--
1 ATAGGTTCGCACATGCAT
* *
24807797 ATCGGTTCGCATATAGCAT
1 ATAGGTTCGCACAT-GCAT
24807816 ATAGGTTCGCACATGCAT
1 ATAGGTTCGCACATGCAT
24807834 AT
1 AT
24807836 TGGATCTTAT
Statistics
Matches: 31, Mismatches: 5, Indels: 4
0.77 0.12 0.10
Matches are distributed among these distances:
16 11 0.35
17 2 0.06
18 6 0.19
19 12 0.39
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29
Consensus pattern (18 bp):
ATAGGTTCGCACATGCAT
Found at i:24808050 original size:18 final size:19
Alignment explanation
Indices: 24808027--24808071 Score: 67
Period size: 18 Copynumber: 2.5 Consensus size: 19
24808017 GCTTATATAC
24808027 ATAGGCTCGA-ATAAATGA
1 ATAGGCTCGACATAAATGA
24808045 ATAGGCTC-ACATAAATGA
1 ATAGGCTCGACATAAATGA
*
24808063 ATATGCTCG
1 ATAGGCTCG
24808072 CATGCATAGG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
17 1 0.04
18 23 0.96
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (19 bp):
ATAGGCTCGACATAAATGA
Found at i:24809779 original size:23 final size:23
Alignment explanation
Indices: 24809744--24809855 Score: 125
Period size: 23 Copynumber: 4.9 Consensus size: 23
24809734 CGGTTTTGGG
* *
24809744 TTTGTTACGAAATGGTAATGTGA
1 TTTGGTACGAAATGGTAATGCGA
* * *
24809767 TTTGGTTCAAAATGGTAATACGA
1 TTTGGTACGAAATGGTAATGCGA
* * *
24809790 TTTGGTACGAATTGGTAAGGTGA
1 TTTGGTACGAAATGGTAATGCGA
* *
24809813 TTTGGTTCGAAATGGTAATACGA
1 TTTGGTACGAAATGGTAATGCGA
*
24809836 TTTGGTACGAAATGTTAATG
1 TTTGGTACGAAATGGTAATG
24809856 GTTCAAAAAG
Statistics
Matches: 70, Mismatches: 19, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
23 70 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (23 bp):
TTTGGTACGAAATGGTAATGCGA
Found at i:24809806 original size:46 final size:46
Alignment explanation
Indices: 24809744--24809855 Score: 179
Period size: 46 Copynumber: 2.4 Consensus size: 46
24809734 CGGTTTTGGG
*
24809744 TTTGTTACGAAATGGTAATGTGATTTGGTTCAAAATGGTAATACGA
1 TTTGGTACGAAATGGTAATGTGATTTGGTTCAAAATGGTAATACGA
* * *
24809790 TTTGGTACGAATTGGTAAGGTGATTTGGTTCGAAATGGTAATACGA
1 TTTGGTACGAAATGGTAATGTGATTTGGTTCAAAATGGTAATACGA
*
24809836 TTTGGTACGAAATGTTAATG
1 TTTGGTACGAAATGGTAATG
24809856 GTTCAAAAAG
Statistics
Matches: 59, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 59 1.00
ACGTcount: A:0.30, C:0.06, G:0.27, T:0.37
Consensus pattern (46 bp):
TTTGGTACGAAATGGTAATGTGATTTGGTTCAAAATGGTAATACGA
Found at i:24824046 original size:21 final size:21
Alignment explanation
Indices: 24824001--24824063 Score: 94
Period size: 21 Copynumber: 3.1 Consensus size: 21
24823991 ATCTTCAAGG
24824001 ATATGCAATCTTAGATATG--
1 ATATGCAATCTTAGATATGAT
24824020 ATATGCAATCTTAGATATGAT
1 ATATGCAATCTTAGATATGAT
* *
24824041 ATATGCAATCTTGGACATGAT
1 ATATGCAATCTTAGATATGAT
24824062 AT
1 AT
24824064 GCAATATTGG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
19 19 0.47
21 21 0.52
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.37
Consensus pattern (21 bp):
ATATGCAATCTTAGATATGAT
Found at i:24824074 original size:19 final size:19
Alignment explanation
Indices: 24824000--24824068 Score: 102
Period size: 19 Copynumber: 3.5 Consensus size: 19
24823990 AATCTTCAAG
24824000 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
24824019 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* *
24824038 GATATATGCAATCTTGGACAT
1 G--ATATGCAATCTTAGATAT
24824059 GATATGCAAT
1 GATATGCAAT
24824069 ATTGGAAGAT
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
19 29 0.63
21 17 0.37
ACGTcount: A:0.36, C:0.12, G:0.17, T:0.35
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:24831131 original size:88 final size:86
Alignment explanation
Indices: 24830965--24831183 Score: 260
Period size: 88 Copynumber: 2.5 Consensus size: 86
24830955 GAAATCACAA
* * * * * *
24830965 AGCCTTGCCTTCCTGGTTTGCAGCGGAGCAGGTTGAAAATAACAGATCTTACCTTCCCGCACTAA
1 AGCCTTGCCTCCCTGG-TTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTACCTTCCCGCACGAA
* * *
24831030 TGGCGAAGTAGATCGAAGATGCC
65 -GGCGAAGCAGATCAAAGATACC
* * *
24831053 GGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATCGA
1 AGCCTTGCCTCCCT-GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTACCTTCCCGCA-CGA
*
24831118 CA-GTGAAGCAGATCAAAGATACC
64 -AGGCGAAGCAGATCAAAGATACC
24831141 AGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTTGAAGATAGC
1 AGCCTTGCCTCCCT-GGTTGTAGTGGAGCAGGTTGAAGATAGC
24831184 TGATAGAGGG
Statistics
Matches: 113, Mismatches: 15, Indels: 6
0.84 0.11 0.04
Matches are distributed among these distances:
88 108 0.96
89 4 0.04
90 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.28, T:0.24
Consensus pattern (86 bp):
AGCCTTGCCTCCCTGGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTACCTTCCCGCACGAAG
GCGAAGCAGATCAAAGATACC
Found at i:24831180 original size:43 final size:43
Alignment explanation
Indices: 24831044--24831181 Score: 132
Period size: 44 Copynumber: 3.2 Consensus size: 43
24831034 GAAGTAGATC
* * *
24831044 GAAGATGCCGGCCTTGCCTCCCTAGGTTGTAGTGGAGCAGGTT
1 GAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
* * * ** * * * * *
24831087 GAAGATAGCAGATCTTGCCTTCCTGCATCGACAGTGAAGCAGATC
1 GAAGATACCAG-CCTTGCCTCCCTGGGTTG-TAGTGGAGCAGGTT
*
24831132 AAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
1 GAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
24831175 GAAGATA
1 GAAGATA
24831182 GCTGATAGAG
Statistics
Matches: 68, Mismatches: 25, Indels: 4
0.70 0.26 0.04
Matches are distributed among these distances:
43 24 0.35
44 25 0.37
45 19 0.28
ACGTcount: A:0.24, C:0.22, G:0.30, T:0.24
Consensus pattern (43 bp):
GAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGCAGGTT
Found at i:24836723 original size:44 final size:43
Alignment explanation
Indices: 24836654--24837073 Score: 226
Period size: 44 Copynumber: 9.6 Consensus size: 43
24836644 TCGACAGCGA
* * *
24836654 AGCAGATCGAAGATAACAG-CCTTGCCTCCCTAGGTTGTAGTGG
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCT-GGTTGTAGTGG
* * * * * *
24836697 AGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGA
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCTG-GTTG-TAGTGG
* * * *
24836742 AGCAGATCGAAGATACCAG-CCTTGCCTCACTGGGTTGTAGTGG
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCT-GGTTGTAGTGG
* * * * *
24836785 AGCAGATTGAAGATAGCAGATCTTGCCTTCCT-GTACCGACAATGA
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCTGGT--TG-TAGTGG
* * *
24836830 AGCAGATCGAAGATACCAG-CCTTGCCTCCCTGGGTTGTAGTGG
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCT-GGTTGTAGTGG
* * * * * * *
24836873 AGTAGGTTGAAGATAGCAGATCTTGCCTTCCT-GTACCGACAATGA
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCTGGT--TG-TAGTGG
* * * * *
24836918 AGCAGATCGAAGATACCA-ACCTTGCCTCTCTGGGCTGTAGTGG
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCT-GGTTGTAGTGG
* * * * *
24836961 AACAGGTTGAAGATAGCAGATCTTGCCTTCCT-GTACCGATAGTGA
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCTGGT--TG-TAGTGG
** * * *
24837006 AGCAGATCAAAGATACCAG-TCTTGCCTCCCTGGGTTGTCGTGA
1 AGCAGATTGAAGATAGCAGATCTTGCCTCCCT-GGTTGTAGTGG
* * *
24837049 AGTAGATCGAAGAAAGCAGATCTTG
1 AGCAGATTGAAGATAGCAGATCTTG
24837074 TATTCATGTA
Statistics
Matches: 274, Mismatches: 80, Indels: 45
0.69 0.20 0.11
Matches are distributed among these distances:
42 5 0.02
43 92 0.34
44 96 0.35
45 76 0.28
46 5 0.02
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (43 bp):
AGCAGATTGAAGATAGCAGATCTTGCCTCCCTGGTTGTAGTGG
Found at i:24836778 original size:88 final size:88
Alignment explanation
Indices: 24836621--24837073 Score: 654
Period size: 88 Copynumber: 5.1 Consensus size: 88
24836611 ACTAGTATCA
* * * * * *
24836621 ATAGCAGATATTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATAACAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
24836686 GGTTGTAGTGGAGCAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* ** * *
24836709 ATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCGAAGATACCAGCCTTGCCTCACTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
*
24836774 GGTTGTAGTGGAGCAGATTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
*
24836797 ATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
*
24836862 GGTTGTAGTGGAGTAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * *
24836885 ATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGCAGATCGAAGATACCAACCTTGCCTCTCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
* *
24836950 GGCTGTAGTGGAACAGGTTGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
* * *
24836973 ATAGCAGATCTTGCCTTCCTGTACCGATAGTGAAGCAGATCAAAGATACCAGTCTTGCCTCCCTG
1 ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
* * * * *
24837038 GGTTGTCGTGAAGTAGATCGAAG
66 GGTTGTAGTGGAGCAGGTTGAAG
*
24837061 AAAGCAGATCTTG
1 ATAGCAGATCTTG
24837074 TATTCATGTA
Statistics
Matches: 332, Mismatches: 33, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
88 332 1.00
ACGTcount: A:0.27, C:0.23, G:0.26, T:0.24
Consensus pattern (88 bp):
ATAGCAGATCTTGCCTTCCTGTACCGACAGTGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTG
GGTTGTAGTGGAGCAGGTTGAAG
Found at i:24837093 original size:44 final size:44
Alignment explanation
Indices: 24837044--24837354 Score: 388
Period size: 44 Copynumber: 7.0 Consensus size: 44
24837034 CCTGGGTTGT
* * *
24837044 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTATTAG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
24837088 CGTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATATATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
*** *
24837132 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * *
24837176 TGGCGAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
24837221 CGTGAAGTAGATCAAAGATAGTAGATATTGTCTTCATGTATTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * *
24837265 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTGG
1 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
* * * *
24837309 TGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGG
1 -CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
24837354 C
1 C
24837355 NNNNNNNNNN
Statistics
Matches: 225, Mismatches: 40, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
44 152 0.68
45 73 0.32
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (44 bp):
CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCATGTATTGG
Found at i:24837151 original size:264 final size:264
Alignment explanation
Indices: 24836621--24837167 Score: 639
Period size: 264 Copynumber: 2.1 Consensus size: 264
24836611 ACTAGTATCA
* * * *
24836621 ATAGCAGATATTGCCTTCCTGCATCGACAGCGAAGCAGATCGAAGATAACAGCCTTGCCTCCCTA
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGATAACAACCTTGCCTCCCTA
* * ** *
24836686 GGTTGTAGTGGAGCAGGTTGAAGATAGCAGATCTTGCCTTCCTGCATTGACAGCGAAGCAGATCG
66 GGCTGTAGTGGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCA
* * * * *
24836751 AAGATACCAGCCTTGCCTCACTGGGTTGTAGTGGAGCAGATTGAAGATAGCAGATCTTGCCTTCC
131 AAGATACCAGCCTTGCCTCACTGGGTTGTAGTGAAGCAGATCGAAGAAAGCAGATCTTGCATTCA
* * * * * * * * *
24836816 TGTACCGACAATGAAGCAGATCGAAGATACCAGCCTTGCCTCCCTGGGTTGTAGTGGAGTAGGTT
196 TGTACAGACAATGAAGCAGATCAAAGATACCAGCCTTGCCTCCATAGATTGGAGTGAAGTAGATC
24836881 GAAG
261 GAAG
* * * * *
24836885 ATAGCAGATCTTGCCTTCCTGTACCGACAATGAAGCAGATCGAAGATACCAACCTTGCCTCTCTG
1 ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGATAACAACCTTGCCTCCCTA
* * *
24836950 GGCTGTAGTGGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGTACCGATAGTGAAGCAGATCA
66 GGCTGTAGTGGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCA
* * * * *
24837015 AAGATACCAGTCTTGCCTCCCTGGGTTGTCGTGAAGTAGATCGAAGAAAGCAGATCTTGTATTCA
131 AAGATACCAGCCTTGCCTCACTGGGTTGTAGTGAAGCAGATCGAAGAAAGCAGATCTTGCATTCA
* * * ** * * * * *
24837080 TGTATTAG-C-GTGAAGTAGATCAAAGATAGTAGATCTTGTCTTCATATATTGGCGTGAAGTAGA
196 TGTA-CAGACAATGAAGCAGATCAAAGATACCAG-CCTTGCCTCCATAGATTGGAGTGAAGTAGA
24837143 TCGAAG
259 TCGAAG
*
24837149 ATAGCAGATCTTGTCTTCC
1 ATAGCAGATCTTGCCTTCC
24837168 CATACTGGTG
Statistics
Matches: 234, Mismatches: 47, Indels: 4
0.82 0.16 0.01
Matches are distributed among these distances:
263 18 0.08
264 215 0.92
265 1 0.00
ACGTcount: A:0.27, C:0.21, G:0.26, T:0.26
Consensus pattern (264 bp):
ATAGCAGATCTTGCCTTCCTGCACCGACAACGAAGCAGATCGAAGATAACAACCTTGCCTCCCTA
GGCTGTAGTGGAACAGGTTGAAGATAGCAGATCTTGCCTTCCTGCACCGACAGCGAAGCAGATCA
AAGATACCAGCCTTGCCTCACTGGGTTGTAGTGAAGCAGATCGAAGAAAGCAGATCTTGCATTCA
TGTACAGACAATGAAGCAGATCAAAGATACCAGCCTTGCCTCCATAGATTGGAGTGAAGTAGATC
GAAG
Found at i:24837220 original size:89 final size:88
Alignment explanation
Indices: 24837044--24837354 Score: 397
Period size: 89 Copynumber: 3.5 Consensus size: 88
24837034 CCTGGGTTGT
* * *
24837044 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTATTAGCGTGAAGTAGATCAAAGATAG
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
*
24837109 TAGATCTTGTCTTCATATATTGG
66 CAGATCTTGTCTTCATATATTGG
* *** * * * *
24837132 CGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGTGGCGAAGTAGATCGAAGAAA
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGG-CGTGAAGTAGATCGAAGATA
* *
24837197 GCAGATCTTATCTTCATGTATTGG
65 GCAGATCTTGTCTTCATATATTGG
* * * *
24837221 CGTGAAGTAGATCAAAGATAGTAGATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
1 CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
* *
24837286 CAGATCTTGTCTTCCTATACTGG
66 CAGATCTTGTCTTCATATATTGG
* * *
24837309 TGGCGAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
1 -CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
24837355 NNNNNNNNNN
Statistics
Matches: 188, Mismatches: 33, Indels: 3
0.84 0.15 0.01
Matches are distributed among these distances:
88 74 0.39
89 114 0.61
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (88 bp):
CGTGAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAG
CAGATCTTGTCTTCATATATTGG
Found at i:24837352 original size:133 final size:133
Alignment explanation
Indices: 24837047--24837354 Score: 553
Period size: 133 Copynumber: 2.3 Consensus size: 133
24837037 GGGTTGTCGT
* *
24837047 GAAGTAGATCGAAGAAAGCAGATCTTGTATTCATGTATTAGCGTGAAGTAGATCAAAGATAGTAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG
*
24837112 ATCTTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
66 ATATTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
24837177 GGC
131 GGC
*
24837180 GAAGTAGATCGAAGAAAGCAGATCTTATCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG
* *
24837245 ATATTGTCTTCATGTATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCTATACTGGT
66 ATATTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
24837310 GGC
131 GGC
*
24837313 GAAGTAGATCGAAGAAAGTAGATCTTGTCTTCATGTATTGGC
1 GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGC
24837355 NNNNNNNNNN
Statistics
Matches: 167, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
133 167 1.00
ACGTcount: A:0.31, C:0.14, G:0.25, T:0.31
Consensus pattern (133 bp):
GAAGTAGATCGAAGAAAGCAGATCTTGTCTTCATGTATTGGCGTGAAGTAGATCAAAGATAGTAG
ATATTGTCTTCATATATTGGCGTGAAGTAGATCGAAGATAGCAGATCTTGTCTTCCCATACTGGT
GGC
Found at i:24845160 original size:22 final size:22
Alignment explanation
Indices: 24845128--24845171 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
24845118 AAAATTTAAA
24845128 ATTTTTAAAAAATTATAAAAATT
1 ATTTTTAAAAAATT-TAAAAATT
24845151 ATTTTTAAAAAATTTAAAAAT
1 ATTTTTAAAAAATTTAAAAAT
24845172 CATTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
ATTTTTAAAAAATTTAAAAATT
Found at i:24852079 original size:14 final size:14
Alignment explanation
Indices: 24852060--24852088 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
24852050 GTGGGAGATC
24852060 GGGTTTTCCTTAAG
1 GGGTTTTCCTTAAG
24852074 GGGTTTTCCTTAAG
1 GGGTTTTCCTTAAG
24852088 G
1 G
24852089 TATCTCCGTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.14, C:0.14, G:0.31, T:0.41
Consensus pattern (14 bp):
GGGTTTTCCTTAAG
Found at i:24859068 original size:24 final size:24
Alignment explanation
Indices: 24859040--24859096 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
24859030 TTCAACAGCT
*
24859040 TTGTAATAGCACAAGTTCATAGTC
1 TTGTAATAGCACAAGTTAATAGTC
* *
24859064 TTGTAACAACACAAGTTAATAGTC
1 TTGTAATAGCACAAGTTAATAGTC
*
24859088 ATGTAATAG
1 TTGTAATAG
24859097 TTTTGTAACA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.39, C:0.14, G:0.16, T:0.32
Consensus pattern (24 bp):
TTGTAATAGCACAAGTTAATAGTC
Found at i:24861759 original size:43 final size:45
Alignment explanation
Indices: 24861640--24861789 Score: 178
Period size: 45 Copynumber: 3.4 Consensus size: 45
24861630 AGGAGGAAGA
* * *
24861640 ATTGGTGGCTTCATCCACAACCTACATGACAACTTGTCTACAAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTACGAAT
** * **
24861685 ATTGGTGGCTTTGTCCACAACCTACAAGGCAGCTTGTCTTTGAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTACGAAT
* * * *
24861730 -TTGGTGG-TTTATCCACAACCCACATGGCAGTTTGTCTGCGAAT
1 ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTACGAAT
24861773 ATTGGTGGCTTCATCCA
1 ATTGGTGGCTTCATCCA
24861790 TATATGTTAG
Statistics
Matches: 88, Mismatches: 15, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
43 30 0.34
44 14 0.16
45 44 0.50
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (45 bp):
ATTGGTGGCTTCATCCACAACCTACATGGCAGCTTGTCTACGAAT
Found at i:24865308 original size:3 final size:3
Alignment explanation
Indices: 24865242--24865296 Score: 110
Period size: 3 Copynumber: 18.3 Consensus size: 3
24865232 TTCAACAAAC
24865242 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24865290 ATA ATA A
1 ATA ATA A
24865297 ATTTTTAATA
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 52 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24866038 original size:31 final size:31
Alignment explanation
Indices: 24865993--24866060 Score: 100
Period size: 31 Copynumber: 2.2 Consensus size: 31
24865983 TTACAAAATG
* * *
24865993 GTCACTGAATTATTCAGAAGTTTTTATTCAA
1 GTCACTGAACTATTCAAAAGTTTTTATGCAA
*
24866024 GTCATTGAACTATTCAAAAGTTTTTATGCAA
1 GTCACTGAACTATTCAAAAGTTTTTATGCAA
24866055 GTCACT
1 GTCACT
24866061 AGGCAATTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.40
Consensus pattern (31 bp):
GTCACTGAACTATTCAAAAGTTTTTATGCAA
Found at i:24869457 original size:14 final size:17
Alignment explanation
Indices: 24869423--24869458 Score: 51
Period size: 14 Copynumber: 2.3 Consensus size: 17
24869413 TCTTTTTCCA
24869423 CTTCCACTTATTCCTTT
1 CTTCCACTTATTCCTTT
24869440 CTTCC-CTT-TTCC-TT
1 CTTCCACTTATTCCTTT
24869454 CTTCC
1 CTTCC
24869459 TTACTAATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 7 0.37
15 4 0.21
16 3 0.16
17 5 0.26
ACGTcount: A:0.06, C:0.42, G:0.00, T:0.53
Consensus pattern (17 bp):
CTTCCACTTATTCCTTT
Found at i:24876338 original size:57 final size:57
Alignment explanation
Indices: 24876270--24876559 Score: 422
Period size: 57 Copynumber: 5.1 Consensus size: 57
24876260 ATTTTTTAGG
* * * * *
24876270 TCATTTACATTTTAGAGAAAACCACATTCATTTTCAAATGATTACATTTCTCCATTT
1 TCATTTTCATTTTAGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
* *
24876327 TCATTTTCA-TTTAGGAGAAAACCTTATTTATTTCCAAATGATTCCATTTCTCCATTT
1 TCATTTTCATTTTA-GAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
*
24876384 TCATTTTCA-TTTAGGAGAAAACCATATTAATTTCCAAATGATTTCATTTCTCCATTT
1 TCATTTTCATTTTA-GAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
*
24876441 TCATTTTCATTTTGGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
1 TCATTTTCATTTTAGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
* * *
24876498 TCATTTTCATTTTGGAGAAAAGCATAATAATTTCCAAATGATTTCTCATTTCTCCATTT
1 TCATTTTCATTTTAGAGAAAACCATATTAATTTCCAAATGA-TTC-CATTTCTCCATTT
24876557 TCA
1 TCA
24876560 CCCTTTCTAT
Statistics
Matches: 216, Mismatches: 13, Indels: 6
0.92 0.06 0.03
Matches are distributed among these distances:
56 4 0.02
57 190 0.88
58 6 0.03
59 16 0.07
ACGTcount: A:0.31, C:0.19, G:0.07, T:0.44
Consensus pattern (57 bp):
TCATTTTCATTTTAGAGAAAACCATATTAATTTCCAAATGATTCCATTTCTCCATTT
Found at i:24883506 original size:33 final size:33
Alignment explanation
Indices: 24883440--24883525 Score: 85
Period size: 33 Copynumber: 2.7 Consensus size: 33
24883430 ATACAACAAG
* * *
24883440 CAGTGACAGTCTGGGCCTGAGCCCTATTCAGTAA
1 CAGT-ACAGTGTGGGCCTTAGCCCAATTCAGTAA
24883474 CAGTACAGTGTGGGCCTTAGCCCAATAT-AGTAA
1 CAGTACAGTGTGGGCCTTAGCCCAAT-TCAGTAA
24883507 C-G----GTGTGGGCCTTAGCCCA
1 CAGTACAGTGTGGGCCTTAGCCCA
24883526 GTACAATATC
Statistics
Matches: 48, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 17 0.35
32 1 0.02
33 25 0.52
34 5 0.10
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.23
Consensus pattern (33 bp):
CAGTACAGTGTGGGCCTTAGCCCAATTCAGTAA
Found at i:24883686 original size:26 final size:26
Alignment explanation
Indices: 24883647--24883747 Score: 112
Period size: 26 Copynumber: 3.9 Consensus size: 26
24883637 CCAATATTAA
* * * **
24883647 AGCAAAACTGCCAGTAATATTATCGT
1 AGCAAAGCTGCCAGTAACAGTATCAC
*
24883673 AGCTAAGCTGCCAGTAACAGTATCAC
1 AGCAAAGCTGCCAGTAACAGTATCAC
24883699 AGCAAAGCTGCCAGTAACAGTATCAC
1 AGCAAAGCTGCCAGTAACAGTATCAC
* * * *
24883725 AGTAAAGATGGCAGTAATAGTAT
1 AGCAAAGCTGCCAGTAACAGTAT
24883748 ACTTCCTCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 64 1.00
ACGTcount: A:0.39, C:0.20, G:0.20, T:0.22
Consensus pattern (26 bp):
AGCAAAGCTGCCAGTAACAGTATCAC
Found at i:24883991 original size:26 final size:27
Alignment explanation
Indices: 24883904--24883990 Score: 115
Period size: 27 Copynumber: 3.3 Consensus size: 27
24883894 GGGTATAACA
*
24883904 GTCATTTTACCCTAT-GAGGGTATTTCG
1 GTCATTTTACCCTATAG-GGGTATTTTG
* * *
24883931 ATCATTTTATCCTATA-GGGTATTTTA
1 GTCATTTTACCCTATAGGGGTATTTTG
24883957 GTCATTTTACCCTATAGGGGTATTTTG
1 GTCATTTTACCCTATAGGGGTATTTTG
24883984 GTCATTT
1 GTCATTT
24883991 ATTAACCTCT
Statistics
Matches: 51, Mismatches: 7, Indels: 4
0.82 0.11 0.06
Matches are distributed among these distances:
26 22 0.43
27 29 0.57
ACGTcount: A:0.21, C:0.15, G:0.18, T:0.46
Consensus pattern (27 bp):
GTCATTTTACCCTATAGGGGTATTTTG
Found at i:24896824 original size:18 final size:18
Alignment explanation
Indices: 24896781--24896847 Score: 73
Period size: 18 Copynumber: 3.7 Consensus size: 18
24896771 TATCTCCAAA
24896781 ACATATAAGGGTTTA-CAT
1 ACATATAAGGG-TTAGCAT
*** *
24896799 ATGCATAAGGGTTCGCAT
1 ACATATAAGGGTTAGCAT
24896817 ACATATAAGGGTTAGCAT
1 ACATATAAGGGTTAGCAT
*
24896835 GCATATAAGGGTT
1 ACATATAAGGGTT
24896848 TGTCAATTTG
Statistics
Matches: 39, Mismatches: 9, Indels: 2
0.78 0.18 0.04
Matches are distributed among these distances:
17 2 0.05
18 37 0.95
ACGTcount: A:0.34, C:0.12, G:0.24, T:0.30
Consensus pattern (18 bp):
ACATATAAGGGTTAGCAT
Found at i:24900873 original size:12 final size:12
Alignment explanation
Indices: 24900858--24900883 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
24900848 TGAATCGAAA
24900858 GGTCTTTTAAAT
1 GGTCTTTTAAAT
24900870 GGTCTTTTAAAT
1 GGTCTTTTAAAT
24900882 GG
1 GG
24900884 GTTGTAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.23, C:0.08, G:0.23, T:0.46
Consensus pattern (12 bp):
GGTCTTTTAAAT
Found at i:24907109 original size:27 final size:28
Alignment explanation
Indices: 24907050--24907103 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 28
24907040 AAAAAAATTA
* *
24907050 AAATTTATTATGTTAATAATTTAAGTAC
1 AAATTAATTATGTTAATAATTAAAGTAC
*
24907078 AAATTAATTAT-TTTATAATTAAAGTA
1 AAATTAATTATGTTAATAATTAAAGTA
24907104 TGAATTTCGA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (28 bp):
AAATTAATTATGTTAATAATTAAAGTAC
Found at i:24912216 original size:45 final size:45
Alignment explanation
Indices: 24912167--24912287 Score: 152
Period size: 45 Copynumber: 2.7 Consensus size: 45
24912157 TGATGTGTAG
* * *
24912167 GACCATAGTTGAAAGAAGTTATGACATCATGATAAAAATGAGTAA
1 GACCATAGCTGAAAGAAGCTATGACATCATGATAAAAATGAGGAA
* * * *
24912212 GACCATGGCTGAAAGATGCTATGACATCATGGTAATAATGAGGAA
1 GACCATAGCTGAAAGAAGCTATGACATCATGATAAAAATGAGGAA
* * *
24912257 GACTATAGCTAAAAGACGCTATGACATCATG
1 GACCATAGCTGAAAGAAGCTATGACATCATG
24912288 TGAAAGCACA
Statistics
Matches: 65, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 65 1.00
ACGTcount: A:0.41, C:0.13, G:0.22, T:0.23
Consensus pattern (45 bp):
GACCATAGCTGAAAGAAGCTATGACATCATGATAAAAATGAGGAA
Found at i:24912489 original size:27 final size:27
Alignment explanation
Indices: 24912448--24912533 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 27
24912438 GGATAATAAG
* *
24912448 CACGGGATAGTTCGATAGGACGTTAAA
1 CACGGGATAGTTCGACAGGACATTAAA
* *
24912475 CATGGGATAGTTCGACGGGACATTAAA
1 CACGGGATAGTTCGACAGGACATTAAA
* *
24912502 CACAGGATAGTCCGACAGGACATTAAA
1 CACGGGATAGTTCGACAGGACATTAAA
24912529 CACGG
1 CACGG
24912534 AAAAGTCTGG
Statistics
Matches: 50, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.35, C:0.19, G:0.28, T:0.19
Consensus pattern (27 bp):
CACGGGATAGTTCGACAGGACATTAAA
Found at i:24913995 original size:2 final size:2
Alignment explanation
Indices: 24913988--24914013 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
24913978 TTGCACCCAA
24913988 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
24914014 AGTTTATTGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:24919600 original size:22 final size:21
Alignment explanation
Indices: 24919565--24919605 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
24919555 CACATATATA
*
24919565 TTTAAAAATATAGATATTATC
1 TTTAAAAATATAGAAATTATC
24919586 TTTAAAAGATATAGAAATTA
1 TTTAAAA-ATATAGAAATTA
24919606 AATAAAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.51, C:0.02, G:0.07, T:0.39
Consensus pattern (21 bp):
TTTAAAAATATAGAAATTATC
Found at i:24925884 original size:32 final size:31
Alignment explanation
Indices: 24925838--24925898 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
24925828 GTGATTTTTC
*
24925838 TAATTAAATTTTTTTA-TTTTAAATTTTTTAGT
1 TAATTAAATATTTTTAGTTTT--ATTTTTTAGT
24925870 TAATTAAATATTTTTAGTTTTATTTTTTA
1 TAATTAAATATTTTTAGTTTTATTTTTTA
24925899 CTTACCTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 8 0.30
32 15 0.56
33 4 0.15
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (31 bp):
TAATTAAATATTTTTAGTTTTATTTTTTAGT
Found at i:24925885 original size:18 final size:17
Alignment explanation
Indices: 24925838--24925888 Score: 63
Period size: 18 Copynumber: 3.1 Consensus size: 17
24925828 GTGATTTTTC
24925838 TAATTAAATTTTTTTA-T
1 TAATTAAA-TTTTTTAGT
24925855 T--TTAAATTTTTTAGT
1 TAATTAAATTTTTTAGT
24925870 TAATTAAATATTTTTAGT
1 TAATTAAAT-TTTTTAGT
24925888 T
1 T
24925889 TTATTTTTTA
Statistics
Matches: 30, Mismatches: 0, Indels: 7
0.81 0.00 0.19
Matches are distributed among these distances:
14 7 0.23
15 7 0.23
17 7 0.23
18 9 0.30
ACGTcount: A:0.33, C:0.00, G:0.04, T:0.63
Consensus pattern (17 bp):
TAATTAAATTTTTTAGT
Found at i:24937313 original size:36 final size:35
Alignment explanation
Indices: 24937249--24937321 Score: 101
Period size: 36 Copynumber: 2.1 Consensus size: 35
24937239 AGTAAACTCT
**
24937249 ATTCAGTTAATAGTGTTTCGGATCTATTCTAACTG
1 ATTCAGTTAATAGCCTTTCGGATCTATTCTAACTG
* *
24937284 ATTCAGTTAAGTAGCCTTTTGGATCTATTCTGACTG
1 ATTCAGTTAA-TAGCCTTTCGGATCTATTCTAACTG
24937320 AT
1 AT
24937322 GCGCTCCTCA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
35 10 0.30
36 23 0.70
ACGTcount: A:0.25, C:0.15, G:0.18, T:0.42
Consensus pattern (35 bp):
ATTCAGTTAATAGCCTTTCGGATCTATTCTAACTG
Found at i:24942628 original size:58 final size:58
Alignment explanation
Indices: 24942538--24942665 Score: 184
Period size: 58 Copynumber: 2.2 Consensus size: 58
24942528 GAGAATCGTT
* * * * *
24942538 CTTGTTTGCGATGATTGCAAGAAAAGGAATTTTGGTGAATGTTGATCAAAGTAGGTAG
1 CTTGTTTTCGTTGATTGCAACAAAAGGAATTTTAGTGAATGTTGATCAAAGTAGGGAG
* *
24942596 CTTGTTTTCGTTGATTGCAACAAAAGGCATTTTAGTGAATGTTGATCAAAGTCGGGAG
1 CTTGTTTTCGTTGATTGCAACAAAAGGAATTTTAGTGAATGTTGATCAAAGTAGGGAG
*
24942654 CATGTTTTCGTT
1 CTTGTTTTCGTT
24942666 ATGGATCTAC
Statistics
Matches: 62, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 62 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.36
Consensus pattern (58 bp):
CTTGTTTTCGTTGATTGCAACAAAAGGAATTTTAGTGAATGTTGATCAAAGTAGGGAG
Found at i:24957263 original size:29 final size:29
Alignment explanation
Indices: 24957231--24957288 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 29
24957221 ACTTCTTTAA
*
24957231 ATGTTGATGAATGATTTAAATTTGGTGTT
1 ATGTTGATGAATGATTCAAATTTGGTGTT
*
24957260 ATGTTGATGAATGGTTCAAATTTGGTGTT
1 ATGTTGATGAATGATTCAAATTTGGTGTT
24957289 TACTTTTCCT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.47
Consensus pattern (29 bp):
ATGTTGATGAATGATTCAAATTTGGTGTT
Found at i:24959302 original size:21 final size:21
Alignment explanation
Indices: 24959276--24959340 Score: 94
Period size: 21 Copynumber: 3.0 Consensus size: 21
24959266 GGAGACTGTC
24959276 AGTGATGTCGCGTCATAAGAT
1 AGTGATGTCGCGTCATAAGAT
*
24959297 AGTGATGTCACGTCATAAGAT
1 AGTGATGTCGCGTCATAAGAT
* *
24959318 AGTGGTGTCGCGACATCAAGAT
1 AGTGATGTCGCGTCAT-AAGAT
24959340 A
1 A
24959341 ATTTTTGTAA
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
21 33 0.85
22 6 0.15
ACGTcount: A:0.31, C:0.15, G:0.28, T:0.26
Consensus pattern (21 bp):
AGTGATGTCGCGTCATAAGAT
Found at i:24964937 original size:41 final size:43
Alignment explanation
Indices: 24964866--24964947 Score: 123
Period size: 41 Copynumber: 2.0 Consensus size: 43
24964856 TTATCCTAGA
* *
24964866 AAAAAAGAATTTTAAAAAAAAGAGAAGATAATCTTGGGTTGCT
1 AAAAAAGAATTTCAAAAAAAAGAGAAGATAAACTTGGGTTGCT
*
24964909 AAAAAAGAA-TTCAAAAAAGA-AGAAGATAAACTTGGGTTG
1 AAAAAAGAATTTCAAAAAAAAGAGAAGATAAACTTGGGTTG
24964948 TTGGATTTAC
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
41 18 0.50
42 9 0.25
43 9 0.25
ACGTcount: A:0.54, C:0.05, G:0.20, T:0.22
Consensus pattern (43 bp):
AAAAAAGAATTTCAAAAAAAAGAGAAGATAAACTTGGGTTGCT
Found at i:24976339 original size:19 final size:19
Alignment explanation
Indices: 24976317--24976365 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
24976307 TAATAAAAAA
*
24976317 TAAAAAAAATT-ACAAGATT
1 TAAAAAAAATTCAAAAG-TT
*
24976336 TAAATAAAATTCAAAAGTT
1 TAAAAAAAATTCAAAAGTT
24976355 TCAAAAAAAAT
1 T-AAAAAAAAT
24976366 AAAATTATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
19 13 0.52
20 12 0.48
ACGTcount: A:0.63, C:0.06, G:0.04, T:0.27
Consensus pattern (19 bp):
TAAAAAAAATTCAAAAGTT
Found at i:24976442 original size:35 final size:34
Alignment explanation
Indices: 24976382--24976448 Score: 82
Period size: 35 Copynumber: 1.9 Consensus size: 34
24976372 ATAAGAATTT
*
24976382 TTAAAATTATAAAAAATGAAAAAATAAAAAAAACA
1 TTAAAAATATAAAAAA-GAAAAAATAAAAAAAACA
*
24976417 TTAAAAATATAGAAAAA-AAATAAATATAAAAA
1 TTAAAAATATA-AAAAAGAAA-AAATAAAAAAA
24976449 TTACAATTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
34 3 0.11
35 20 0.71
36 5 0.18
ACGTcount: A:0.75, C:0.01, G:0.03, T:0.21
Consensus pattern (34 bp):
TTAAAAATATAAAAAAGAAAAAATAAAAAAAACA
Found at i:24978999 original size:12 final size:12
Alignment explanation
Indices: 24978967--24979023 Score: 62
Period size: 13 Copynumber: 4.7 Consensus size: 12
24978957 ATAATTTCTC
24978967 AAATTTTTTTCA
1 AAATTTTTTTCA
*
24978979 GAATATTTTTTCA
1 AAAT-TTTTTTCA
24978992 AAAGTTTTTTTCA
1 AAA-TTTTTTTCA
* *
24979005 AAATATTCTT-A
1 AAATTTTTTTCA
24979016 AAATTTTT
1 AAATTTTT
24979024 CCTATTTAAA
Statistics
Matches: 37, Mismatches: 6, Indels: 5
0.77 0.12 0.10
Matches are distributed among these distances:
11 7 0.19
12 8 0.22
13 21 0.57
14 1 0.03
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54
Consensus pattern (12 bp):
AAATTTTTTTCA
Found at i:24983279 original size:23 final size:23
Alignment explanation
Indices: 24983233--24983279 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
24983223 TTTTCCTGAG
**
24983233 TATTATCACTAAATAATTTTAAA
1 TATTATCACTAAATAATTCAAAA
24983256 TATTATCACTAAATAATTCAAAA
1 TATTATCACTAAATAATTCAAAA
24983279 T
1 T
24983280 TTAAAAATCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.49, C:0.11, G:0.00, T:0.40
Consensus pattern (23 bp):
TATTATCACTAAATAATTCAAAA
Found at i:24983884 original size:12 final size:12
Alignment explanation
Indices: 24983862--24983893 Score: 55
Period size: 12 Copynumber: 2.6 Consensus size: 12
24983852 CTACATACAT
24983862 TTTTATTTTTTTG
1 TTTT-TTTTTTTG
24983875 TTTTTTTTTTTG
1 TTTTTTTTTTTG
24983887 TTTTTTT
1 TTTTTTT
24983894 CAAACGTATT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 15 0.79
13 4 0.21
ACGTcount: A:0.03, C:0.00, G:0.06, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTTTG
Found at i:24988774 original size:23 final size:23
Alignment explanation
Indices: 24988748--24988817 Score: 86
Period size: 23 Copynumber: 3.0 Consensus size: 23
24988738 ACTAGATTTT
* * *
24988748 TCCTAAGTATTATTACTGAATAA
1 TCCTAAATATTATCACTAAATAA
24988771 TCCTAAATATTATCACTAAATAA
1 TCCTAAATATTATCACTAAATAA
** *
24988794 TTTTAAATATTATCACAAAATAA
1 TCCTAAATATTATCACTAAATAA
24988817 T
1 T
24988818 TCAAAATTTA
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 41 1.00
ACGTcount: A:0.46, C:0.13, G:0.03, T:0.39
Consensus pattern (23 bp):
TCCTAAATATTATCACTAAATAA
Found at i:24988824 original size:23 final size:23
Alignment explanation
Indices: 24988766--24988824 Score: 82
Period size: 23 Copynumber: 2.6 Consensus size: 23
24988756 ATTATTACTG
* *
24988766 AATAATCCTAAATATTATCACTA
1 AATAATTCTAAATATTATCACAA
*
24988789 AATAATTTTAAATATTATCACAA
1 AATAATTCTAAATATTATCACAA
*
24988812 AATAATTCAAAAT
1 AATAATTCTAAAT
24988825 TTAAAAATCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.36
Consensus pattern (23 bp):
AATAATTCTAAATATTATCACAA
Found at i:24991755 original size:2 final size:2
Alignment explanation
Indices: 24991748--24991772 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24991738 TTTCATGGTT
24991748 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
24991773 TAGTCTTCTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24995124 original size:50 final size:50
Alignment explanation
Indices: 24995059--24995247 Score: 182
Period size: 50 Copynumber: 3.7 Consensus size: 50
24995049 CTGTATTTCC
* * * * *
24995059 AATGCCATATTCCAGATATGTTCTTACATGGGAGCTCTCATATCAGTGC-
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCT
** * *
24995108 ACATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTCGGTGCT
1 A-ATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCT
* * * *
24995159 AACGCCATGTCCAAGACATGGTCTTACATGAGACCTCTCATAATCTCAATGATGCC
1 AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCAT-A--TC-A-G-TGCT
*
24995215 AATGCCATGTCCCATACATGGTCTTACATGGGA
1 AATGCCATGTCCCAGACATGGTCTTACATGGGA
24995248 TCTCATTCCC
Statistics
Matches: 111, Mismatches: 21, Indels: 9
0.79 0.15 0.06
Matches are distributed among these distances:
49 1 0.01
50 74 0.67
51 1 0.01
53 2 0.02
55 1 0.01
56 32 0.29
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (50 bp):
AATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCAGTGCT
Found at i:24996921 original size:9 final size:9
Alignment explanation
Indices: 24996907--24996950 Score: 56
Period size: 8 Copynumber: 5.0 Consensus size: 9
24996897 TTTGGTCCCT
*
24996907 TTTTATTTC
1 TTTTATTTA
24996916 TTTTATTTTA
1 TTTTA-TTTA
24996926 TTTTATTTA
1 TTTTATTTA
24996935 -TTTATTTA
1 TTTTATTTA
24996943 TTTT-TTTA
1 TTTTATTTA
24996951 ATTAAATGGT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
8 12 0.38
9 12 0.38
10 8 0.25
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATTTA
Found at i:24999903 original size:4 final size:4
Alignment explanation
Indices: 24999890--24999929 Score: 50
Period size: 4 Copynumber: 10.8 Consensus size: 4
24999880 TCTTATTTCC
*
24999890 CTTT -TTT CTTT C-TT -TTT CTTT TTTT CTTT CTTT CTTT CTT
1 CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTTT CTT
24999930 CAAGAACAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
3 7 0.23
4 24 0.77
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (4 bp):
CTTT
Found at i:25008330 original size:36 final size:37
Alignment explanation
Indices: 25008281--25008372 Score: 116
Period size: 36 Copynumber: 2.5 Consensus size: 37
25008271 GATTTGGCAT
**
25008281 ACCTCCCTAGATCATGCTATGTAGGCGAATCT-A-GCG
1 ACCTCCCTAGATCATGCTATGTAGAAGAATCTGACG-G
* * *
25008317 ACCTCCTTGGATCATGCCATGTAGAAGAATCTGACGG
1 ACCTCCCTAGATCATGCTATGTAGAAGAATCTGACGG
25008354 ACCTCCCTAGATCATGCTA
1 ACCTCCCTAGATCATGCTA
25008373 GGCCATGGAT
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
36 27 0.59
37 18 0.39
38 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (37 bp):
ACCTCCCTAGATCATGCTATGTAGAAGAATCTGACGG
Found at i:25015374 original size:29 final size:29
Alignment explanation
Indices: 25015342--25015440 Score: 74
Period size: 29 Copynumber: 3.3 Consensus size: 29
25015332 AAAAGAAAAA
*
25015342 CTTTGTGGCAAAACTCTAGACAGGAAAGC
1 CTTTGTGGCAAAACTCTAGAAAGGAAAGC
* * * * * *
25015371 CTTTGTAGTAAGTACTGGATGGAAATGG-CAGC
1 CTTTGTGGCAA-AACT--CTAGAAA-GGAAAGC
* *
25015403 CTTTATGGCAAAACTCTAGATAGGAAAGC
1 CTTTGTGGCAAAACTCTAGAAAGGAAAGC
25015432 CTTTGTGGC
1 CTTTGTGGC
25015441 GAGTACTAGA
Statistics
Matches: 49, Mismatches: 16, Indels: 10
0.65 0.21 0.13
Matches are distributed among these distances:
28 2 0.04
29 24 0.49
30 3 0.06
31 3 0.06
32 15 0.31
33 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.26
Consensus pattern (29 bp):
CTTTGTGGCAAAACTCTAGAAAGGAAAGC
Found at i:25015446 original size:61 final size:61
Alignment explanation
Indices: 25015333--25015596 Score: 282
Period size: 61 Copynumber: 4.3 Consensus size: 61
25015323 ACACCAGCTA
* * * *
25015333 AAAGAA-AAACTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTAGTAAGTACTGGATGG
1 AAAGAACAACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGGATGT
* * * * * *
25015393 AAATG-GCAGCCTTTATGGCAAAACTCTAGATAGGAAAGCCTTTGTGGCGAGTACTAGATGT
1 AAA-GAACAACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGGATGT
* * * * * *
25015454 AAAGAACAACCTTTGTGGAAAAATTTTGGACAAGAAAGCCTTTGTGGTAAGTACTGGATGT
1 AAAGAACAACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGGATGT
* * * * *
25015515 AAAGAACAACCTTTGTGGCAAAACTCTAGACATGAAAGCCTTTATGGCAAATATTGAATGT
1 AAAGAACAACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGGATGT
* *
25015576 AAA-AGACAGCTTTTGTGGCAA
1 AAAGA-ACAACCTTTGTGGCAA
25015597 GTACTGGATG
Statistics
Matches: 166, Mismatches: 34, Indels: 7
0.80 0.16 0.03
Matches are distributed among these distances:
60 5 0.03
61 161 0.97
ACGTcount: A:0.36, C:0.14, G:0.23, T:0.26
Consensus pattern (61 bp):
AAAGAACAACCTTTGTGGCAAAACTCTAGACAGGAAAGCCTTTGTGGCAAGTACTGGATGT
Found at i:25015529 original size:32 final size:32
Alignment explanation
Indices: 25015431--25015532 Score: 86
Period size: 32 Copynumber: 3.3 Consensus size: 32
25015421 GATAGGAAAG
** *
25015431 CCTTTGTGGCGAGTACTAGATGTAAAGAACAA
1 CCTTTGTGGAAAGTACTGGATGTAAAGAACAA
* ** * *
25015463 CCTTTGTGGAAAAATTTTGGA---CAAGAA-AG
1 CCTTTGTGG-AAAGTACTGGATGTAAAGAACAA
*
25015492 CCTTTGTGGTAAGTACTGGATGTAAAGAACAA
1 CCTTTGTGGAAAGTACTGGATGTAAAGAACAA
25015524 CCTTTGTGG
1 CCTTTGTGG
25015533 CAAAACTCTA
Statistics
Matches: 51, Mismatches: 14, Indels: 10
0.68 0.19 0.13
Matches are distributed among these distances:
28 7 0.14
29 10 0.20
30 5 0.10
31 5 0.10
32 19 0.37
33 5 0.10
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.28
Consensus pattern (32 bp):
CCTTTGTGGAAAGTACTGGATGTAAAGAACAA
Found at i:25015595 original size:32 final size:32
Alignment explanation
Indices: 25015485--25015629 Score: 100
Period size: 32 Copynumber: 4.6 Consensus size: 32
25015475 AATTTTGGAC
* * * *
25015485 AAGAAAGCCTTTGTGGTAAGTACTGGATGT-A
1 AAGACAGCCTTTGTGGCAAATACTGAATGTAA
* ** *
25015516 AAGAACAACCTTTGTGGCAAA-ACTCTA-G-AC
1 AAG-ACAGCCTTTGTGGCAAATACTGAATGTAA
* * * *
25015546 ATGAAAGCCTTTATGGCAAATATTGAATGTAA
1 AAGACAGCCTTTGTGGCAAATACTGAATGTAA
* * *
25015578 AAGACAGCTTTTGTGGCAAGTACTGGATGTAA
1 AAGACAGCCTTTGTGGCAAATACTGAATGTAA
* *
25015610 AGGTCAGCCTTTGTGGCAAA
1 AAGACAGCCTTTGTGGCAAA
25015630 ACTCTAGATA
Statistics
Matches: 83, Mismatches: 26, Indels: 9
0.70 0.22 0.08
Matches are distributed among these distances:
29 14 0.17
30 6 0.07
31 8 0.10
32 55 0.66
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.27
Consensus pattern (32 bp):
AAGACAGCCTTTGTGGCAAATACTGAATGTAA
Found at i:25015602 original size:93 final size:93
Alignment explanation
Indices: 25015485--25015687 Score: 262
Period size: 93 Copynumber: 2.2 Consensus size: 93
25015475 AATTTTGGAC
* * *
25015485 AAGAAAGCCTTTGTGGTAAGTACTGGATGTAAAGAACAACCTTTGTGGCAAAACTCTAGACATGA
1 AAGACAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAACCTTTGTGGCAAAACTCTAGACAAGA
*
25015550 AAGCCTTTATGGCAAATATTGAATGTAA
66 AAGACTTTATGGCAAATATTGAATGTAA
* ** * *
25015578 AAGACAGCTTTTGTGGCAAGTACTGGATGTAAAGGTCAGCCTTTGTGGCAAAACTCTAGATAAGA
1 AAGACAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAACCTTTGTGGCAAAACTCTAGACAAGA
* * * *
25015643 AAGATTTTATGGCTAGTATTGGATGTAA
66 AAGACTTTATGGCAAATATTGAATGTAA
* * *
25015671 AGGACAACCTTTATGGC
1 AAGACAGCCTTTGTGGC
25015688 GAAAATTTGG
Statistics
Matches: 93, Mismatches: 17, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
93 93 1.00
ACGTcount: A:0.34, C:0.14, G:0.24, T:0.28
Consensus pattern (93 bp):
AAGACAGCCTTTGTGGCAAGTACTGGATGTAAAGAACAACCTTTGTGGCAAAACTCTAGACAAGA
AAGACTTTATGGCAAATATTGAATGTAA
Found at i:25027462 original size:16 final size:16
Alignment explanation
Indices: 25027441--25027474 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
25027431 TTCTAAGAAG
25027441 TGTGCATGGAATTGAA
1 TGTGCATGGAATTGAA
25027457 TGTGCATGGAATTGAA
1 TGTGCATGGAATTGAA
25027473 TG
1 TG
25027475 GTTATAGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.29, C:0.06, G:0.32, T:0.32
Consensus pattern (16 bp):
TGTGCATGGAATTGAA
Found at i:25027921 original size:39 final size:39
Alignment explanation
Indices: 25027867--25027976 Score: 157
Period size: 39 Copynumber: 2.8 Consensus size: 39
25027857 TGTAAAAACT
* *
25027867 AAGACACATAATTAAAGTGCAGTGTTTAAAACACATTCA
1 AAGACTCATAATTAAAGTGCAGTATTTAAAACACATTCA
* *
25027906 AAGACTCATAATTAAAGTGCAGTATTTAAGACACATTTA
1 AAGACTCATAATTAAAGTGCAGTATTTAAAACACATTCA
* * *
25027945 ATGACTCATAATTAAAGTGTAATATTTAAAAC
1 AAGACTCATAATTAAAGTGCAGTATTTAAAAC
25027977 GCATATTTAA
Statistics
Matches: 63, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 63 1.00
ACGTcount: A:0.45, C:0.13, G:0.12, T:0.30
Consensus pattern (39 bp):
AAGACTCATAATTAAAGTGCAGTATTTAAAACACATTCA
Found at i:25031267 original size:19 final size:19
Alignment explanation
Indices: 25031243--25031287 Score: 90
Period size: 19 Copynumber: 2.4 Consensus size: 19
25031233 TTTTTAATTA
25031243 CTTTGGAATTTTGTTTGGG
1 CTTTGGAATTTTGTTTGGG
25031262 CTTTGGAATTTTGTTTGGG
1 CTTTGGAATTTTGTTTGGG
25031281 CTTTGGA
1 CTTTGGA
25031288 TTTATTGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.11, C:0.07, G:0.31, T:0.51
Consensus pattern (19 bp):
CTTTGGAATTTTGTTTGGG
Found at i:25031645 original size:75 final size:76
Alignment explanation
Indices: 25031556--25031704 Score: 282
Period size: 76 Copynumber: 2.0 Consensus size: 76
25031546 TGTTTAACTG
*
25031556 AAAAACTACGTTTTCTGAAAACTATCAATATTTG-AATTTTTTTTCTAAAAGATAAACGATTTCT
1 AAAAACTACATTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACGATTTCT
25031620 TTCAAAAGGAA
66 TTCAAAAGGAA
25031631 AAAAACTACATTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACGATTTCT
1 AAAAACTACATTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACGATTTCT
25031696 TTCAAAAGG
66 TTCAAAAGG
25031705 TAAATTATAA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
75 33 0.46
76 39 0.54
ACGTcount: A:0.42, C:0.12, G:0.09, T:0.38
Consensus pattern (76 bp):
AAAAACTACATTTTCTGAAAACTATCAATATTTGAAATTTTTTTTCTAAAAGATAAACGATTTCT
TTCAAAAGGAA
Found at i:25048185 original size:2 final size:2
Alignment explanation
Indices: 25048178--25048202 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
25048168 ACTGCCAATT
25048178 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
25048203 CTCAATTTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25055295 original size:11 final size:11
Alignment explanation
Indices: 25055281--25055317 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
25055271 AAAAATAAAA
25055281 AAAAATATTTT
1 AAAAATATTTT
25055292 AAAAATATTTT
1 AAAAATATTTT
25055303 --AAA-ATTTT
1 AAAAATATTTT
25055311 AAAAATA
1 AAAAATA
25055318 AAAAATATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
8 5 0.22
9 3 0.13
10 3 0.13
11 12 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (11 bp):
AAAAATATTTT
Found at i:25066539 original size:6 final size:6
Alignment explanation
Indices: 25066530--25066598 Score: 54
Period size: 6 Copynumber: 11.5 Consensus size: 6
25066520 AAAAGAAAAA
**
25066530 AAAATC AAAATC AAAA-C AAAAAG AAGAA-- AAAATC AAAATC AAAATC
1 AAAATC AAAATC AAAATC AAAATC AA-AATC AAAATC AAAATC AAAATC
**
25066576 AAATTAAA AAAATC AAAATC AAA
1 AAA--ATC AAAATC AAAATC AAA
25066599 GTAAAAAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
4 2 0.04
5 7 0.13
6 37 0.71
7 2 0.04
8 4 0.08
ACGTcount: A:0.72, C:0.12, G:0.03, T:0.13
Consensus pattern (6 bp):
AAAATC
Found at i:25066552 original size:28 final size:28
Alignment explanation
Indices: 25066519--25066598 Score: 103
Period size: 28 Copynumber: 2.9 Consensus size: 28
25066509 AAAAAGAGAG
25066519 CAAAAGAAAAAAAAATCAAAATCAAAA-
1 CAAAAGAAAAAAAAATCAAAATCAAAAT
*
25066546 CAAAAAGAAGAAAAAATCAAAATCAAAAT
1 C-AAAAGAAAAAAAAATCAAAATCAAAAT
**
25066575 C-AAA-TTAAAAAAATCAAAATCAAA
1 CAAAAGAAAAAAAAATCAAAATCAAA
25066599 GTAAAAAAAA
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
26 17 0.36
27 4 0.09
28 25 0.53
29 1 0.02
ACGTcount: A:0.74, C:0.11, G:0.04, T:0.11
Consensus pattern (28 bp):
CAAAAGAAAAAAAAATCAAAATCAAAAT
Found at i:25066589 original size:20 final size:20
Alignment explanation
Indices: 25066564--25066607 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
25066554 AGAAAAAATC
*
25066564 AAAATCAAAATCAAATTAAA
1 AAAATCAAAATCAAAGTAAA
25066584 AAAATCAAAATCAAAGTAAA
1 AAAATCAAAATCAAAGTAAA
25066604 AAAA
1 AAAA
25066608 AATGAAAACG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.73, C:0.09, G:0.02, T:0.16
Consensus pattern (20 bp):
AAAATCAAAATCAAAGTAAA
Found at i:25067583 original size:44 final size:44
Alignment explanation
Indices: 25067491--25067583 Score: 107
Period size: 44 Copynumber: 2.1 Consensus size: 44
25067481 ATACAAGCCT
* * ** *
25067491 TATCTCCCTAAGCAATAGTGGAGCAGGTTGAAAATTGCAAATCT
1 TATCTCCCTAAGCAATAGTGGAGCAGATCGAAAACGGCAAATCC
* *
25067535 TATCTCCCTAAGCAATTA-TGGAGCAGATCGAAGACGGCGAATCC
1 TATCTCCCTAAGCAA-TAGTGGAGCAGATCGAAAACGGCAAATCC
25067579 TATCT
1 TATCT
25067584 TCCCCAGGAG
Statistics
Matches: 41, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
44 39 0.95
45 2 0.05
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.26
Consensus pattern (44 bp):
TATCTCCCTAAGCAATAGTGGAGCAGATCGAAAACGGCAAATCC
Found at i:25067786 original size:128 final size:129
Alignment explanation
Indices: 25067507--25067802 Score: 400
Period size: 128 Copynumber: 2.3 Consensus size: 129
25067497 CCTAAGCAAT
* * * * * *
25067507 AGTGGAGCAGGTTGAAAATTGCAAATCTTATCTCCCTAAGCAATTATGGAGCAGATCGAAGACGG
1 AGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAAGTACGGAGAAGATCGAAGACGG
* * *
25067572 CGAATCCTATCTTCCCCAGGAGTAGGGAAACAAATTTAAGCCACAAGTCCTATGTCCCTGGTCAG
66 CGAATCCTATCTT--CCAAGAGTAAGGAAACAAATTTAAGCCACAAGTCCTATCTCCCTGGTCAG
25067637 C
129 C
* *
25067638 AGTGGAGTAGGTTGGAAATTACAGATCTTGTCTCCCTAAGC-AGTAGCGGAGAAGATCGAAGACG
1 AGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAAGTA-CGGAGAAGATCGAAGACG
* * * *
25067702 GCGAATCTTATCTT-CAAGTGTAAGGAAGCAGATTTAAGCCACAAGTCCTATCTCCCTGGTCAGC
65 GCGAATCCTATCTTCCAAGAGTAAGGAAACAAATTTAAGCCACAAGTCCTATCTCCCTGGTCAGC
25067766 AGTGGAGTAGG-TGAAGAATTACAGATCTTATCTCCCT
1 AGTGGAGTAGGTTGAA-AATTACAGATCTTATCTCCCT
25067803 GAGATTACAG
Statistics
Matches: 146, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
127 3 0.02
128 75 0.51
130 3 0.02
131 65 0.45
ACGTcount: A:0.30, C:0.21, G:0.24, T:0.24
Consensus pattern (129 bp):
AGTGGAGTAGGTTGAAAATTACAGATCTTATCTCCCTAAGCAAGTACGGAGAAGATCGAAGACGG
CGAATCCTATCTTCCAAGAGTAAGGAAACAAATTTAAGCCACAAGTCCTATCTCCCTGGTCAGC
Found at i:25067838 original size:44 final size:44
Alignment explanation
Indices: 25067790--25068294 Score: 280
Period size: 44 Copynumber: 11.6 Consensus size: 44
25067780 AGAATTACAG
*
25067790 ATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * *
25067834 ATCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAG-TGAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGTA
* * * * *
25067878 ATCTTATC-CCTCTGA-AGTAACAGTAGAGTAGA-TCACATC-AG--
1 ATCTTATCTCC-CTGAGA-TTACAGTGGAGCAGATTGA-AGCTAGTA
* * ** * * *
25067919 GTCTTATCTCCCCGAGATTACAGTGGAATAGACTGAAG-AATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
* *
25067964 GATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * *
25068009 ATCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAG-TAAAG-G
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCT--AGTA
* * * * * *
25068053 ATCTTATCTCTCTGA-AGTTCCAGTAGAGCAGATCGTATC-AG--
1 ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGTA
** ** ** * *
25068094 GCCTTATCTCCCTGAGATTACAGTGGAATAGACCGAAG-AATTTCA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTA-GT-A
*
25068139 GATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTA
1 -ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * **
25068184 ATCTTATCTCCCTGAGATTACAGTGGAGCTGATTAAAG-TAAAA
1 ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
* * * * * *
25068227 TATCTTATCTCTCTGA-AGTTCCAGTAGAGCAGATCGTATC-AG--
1 -ATCTTATCTCCCTGAGA-TTACAGTGGAGCAGATTGAAGCTAGTA
*
25068269 GTCTTATCTCCCTGAGATTACA-TGGA
1 ATCTTATCTCCCTGAGATTACAGTGGA
25068295 ATAGACTGAA
Statistics
Matches: 349, Mismatches: 80, Indels: 68
0.70 0.16 0.14
Matches are distributed among these distances:
40 3 0.01
41 68 0.19
42 11 0.03
43 12 0.03
44 183 0.52
45 6 0.02
46 64 0.18
47 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (44 bp):
ATCTTATCTCCCTGAGATTACAGTGGAGCAGATTGAAGCTAGTA
Found at i:25067936 original size:85 final size:84
Alignment explanation
Indices: 25067835--25068294 Score: 335
Period size: 85 Copynumber: 5.3 Consensus size: 84
25067825 AAGCTAGTAA
* *
25067835 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTGAAGGATCTTATCCCTCTGAAGTAACA
1 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCCCTCTGAAGTTACA
*
25067900 GTAGAGTAGATCACATCAGG
66 GTAGAGCAGATCA-ATCAGG
* *** * * *
25067920 TCTTATCTCCCCGAGATTACAGTGGAATAGACTGAAG-AATTTCA-GATCTTATCTCC-CTGAAA
1 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAA----AGGATCTTATC-CCTCTGAAG
** * * *
25067982 TTACAGCGGAGCAGATTGAAGCTAGTAA
61 TTACAGTAGAGCAGA-TCAATC-AG--G
* * *
25068010 TCCTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCA
1 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCCCTCTGAAGTTACA
*
25068075 GTAGAGCAGATCGTATCAGG
66 GTAGAGCAGATC-AATCAGG
* * * **
25068095 CCTTATCTCCCTGAGATTACAGTGGAATAGACCGA--AGAATTTCA-GATCTTATCTCC-CTG-A
1 TCTTATCTCCCTGAGATTACAGTGG---AG-CGGATTA-AAGTAAAGGATCTTATC-CCTCTGAA
** * * *
25068155 GATTACAGCGGAGCAGATTGAAGCTAGTAA
60 G-TTACAGTAGAGCAGA-TCAATC-AG--G
* ** * *
25068185 TCTTATCTCCCTGAGATTACAGTGGAGCTGATTAAAGTAAAATATCTTATCTCTCTGAAGTTCCA
1 TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCCCTCTGAAGTTACA
*
25068250 GTAGAGCAGATCGTATCAGG
66 GTAGAGCAGATC-AATCAGG
25068270 TCTTATCTCCCTGAGATTACA-TGGA
1 TCTTATCTCCCTGAGATTACAGTGGA
25068295 ATAGACTGAA
Statistics
Matches: 286, Mismatches: 59, Indels: 61
0.70 0.15 0.15
Matches are distributed among these distances:
84 5 0.02
85 75 0.26
86 5 0.02
87 69 0.24
88 71 0.25
89 5 0.02
90 54 0.19
91 2 0.01
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (84 bp):
TCTTATCTCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCCCTCTGAAGTTACA
GTAGAGCAGATCAATCAGG
Found at i:25067970 original size:175 final size:175
Alignment explanation
Indices: 25067777--25068324 Score: 927
Period size: 175 Copynumber: 3.1 Consensus size: 175
25067767 GTGGAGTAGG
*
25067777 TGAAGAATTACAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
1 TGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
* * ** *
25067842 TCCCTGAGATTACAGTGGAGCGGATTAAAGTGAAGGATCTTATCCCTCTGAAGTAACAGTAGAGT
66 TCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCAGTAGAGC
** *
25067907 AGATCACATCAGGTCTTATCTCCCCGAGATTACAGTGGAATAGAC
131 AGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAC
* *
25067952 TGAAGAATTTCAGATCTTATCTCCCTGAAATTACAGCGGAGCAGATTGAAGCTAGTAATCCTATC
1 TGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
25068017 TCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCAGTAGAGC
66 TCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCAGTAGAGC
*
25068082 AGATCGTATCAGGCCTTATCTCCCTGAGATTACAGTGGAATAGAC
131 AGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAC
*
25068127 CGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
1 TGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
* **
25068192 TCCCTGAGATTACAGTGGAGCTGATTAAAGTAAAATATCTTATCTCTCTGAAGTTCCAGTAGAGC
66 TCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCAGTAGAGC
25068257 AGATCGTATCAGGTCTTATCTCCCTGAGATTACA-TGGAATAGAC
131 AGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAC
* *
25068301 TGAAGAATTTAAGACCTTATCTCC
1 TGAAGAATTTCAGATCTTATCTCC
25068325 TAGATAATGC
Statistics
Matches: 351, Mismatches: 22, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
174 31 0.09
175 320 0.91
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.28
Consensus pattern (175 bp):
TGAAGAATTTCAGATCTTATCTCCCTGAGATTACAGCGGAGCAGATTGAAGCTAGTAATCTTATC
TCCCTGAGATTACAGTGGAGCGGATTAAAGTAAAGGATCTTATCTCTCTGAAGTTCCAGTAGAGC
AGATCGTATCAGGTCTTATCTCCCTGAGATTACAGTGGAATAGAC
Found at i:25068631 original size:14 final size:14
Alignment explanation
Indices: 25068612--25068649 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
25068602 AGCTGTAATA
25068612 GGCCCAATTTACCC
1 GGCCCAATTTACCC
*
25068626 GGCCCAATTTACCT
1 GGCCCAATTTACCC
25068640 GGCCCAATTT
1 GGCCCAATTT
25068650 TATAAATAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.21, C:0.37, G:0.16, T:0.26
Consensus pattern (14 bp):
GGCCCAATTTACCC
Found at i:25074355 original size:44 final size:44
Alignment explanation
Indices: 25074307--25074426 Score: 177
Period size: 44 Copynumber: 2.7 Consensus size: 44
25074297 TTATCATCTT
*
25074307 AATCTGCTCCACTGCAACTTTAGGGAGATAGGATTAGTAGCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAGCTTC
* * * *
25074351 AATCTGCTCTACTACAACTTTAGGGAGATAAGATTGGTATCTTC
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAGCTTC
* *
25074395 AACCTGCTCCATTGCAACTTTAGGGAGATAAG
1 AATCTGCTCCACTGCAACTTTAGGGAGATAAG
25074427 GTTTGATGTG
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
44 67 1.00
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (44 bp):
AATCTGCTCCACTGCAACTTTAGGGAGATAAGATTAGTAGCTTC
Found at i:25074896 original size:130 final size:129
Alignment explanation
Indices: 25074754--25075201 Score: 483
Period size: 130 Copynumber: 3.4 Consensus size: 129
25074744 ATAAGATTCG
* *
25074754 CTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAAATAAGACTTGTAACTTCGACCTGCCCTACT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCCCTACT
25074819 GCAATTTCAAGGAGATAAGGTTTGCAATGATCTGCTCTACTACAACTTCAGAGAGATAAGATCTA
66 GCAATTTCAAGGAGATAAGGTTTGCAAT-ATCTGCTCTACTACAACTTCAGAGAGATAAGATCTA
* * * * *
25074884 CTATCTTTAGTCTGCTCTACTGCACCTTCAGGGAGATAAGACTTGTAA-TCTCAACATGCTCC-A
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACT-TCGACCTGC-CCTA
* * * * * * * *
25074947 CTGTAACTTC-AGAGAGACAAGATCTGTAATTTATAGCTTCAATCTATTCCACTATAACTTCA-A
64 CTGCAATTTCAAG-GAGATAAGGTTTGCAA--TAT--CTGC--TC---T--ACTACAACTTCAGA
* *
25075010 GAAAATAAGAT-TCG
117 G-AGATAAGATCT-A
* *
25075024 CTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCCCTATT
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCCCTACT
* *
25075089 GCAATTTCAGGGAGATAAGGTTTGCGATATTCTGCTCTACTACAACTTCAGAGAGATAAGATCTA
66 GCAATTTCAAGGAGATAAGGTTTGCAATA-TCTGCTCTACTACAACTTCAGAGAGATAAGATCTA
* * *
25075154 CTATCTTTAGTCTGCTCCACTGCACCTTTAGGGAGATAAGACTTGTAA
1 CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAA
25075202 TCTCAACATG
Statistics
Matches: 256, Mismatches: 40, Indels: 44
0.75 0.12 0.13
Matches are distributed among these distances:
129 3 0.01
130 134 0.52
131 7 0.03
132 2 0.01
133 3 0.01
135 4 0.02
137 3 0.01
138 3 0.01
139 6 0.02
140 89 0.35
141 2 0.01
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.31
Consensus pattern (129 bp):
CTATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTCGACCTGCCCTACT
GCAATTTCAAGGAGATAAGGTTTGCAATATCTGCTCTACTACAACTTCAGAGAGATAAGATCTA
Found at i:25074990 original size:270 final size:270
Alignment explanation
Indices: 25074676--25075233 Score: 974
Period size: 270 Copynumber: 2.1 Consensus size: 270
25074666 GATCTACTCT
* *
25074676 ACTGCAACTTCAGAGAGACAAGATCTGTAATTTATAGCTTCAATCTGTTCCACTGTAACTTCAAG
1 ACTGCAACTTCAGAGAGACAAGATCTGTAATTTATAGCTTCAATCTATTCCACTATAACTTCAAG
* * *
25074741 GAAATAAGATTCGCTATCTTCAGTCTGCTCCACTGTAACTTCAGGGAAATAAGACTTGTAACTTC
66 AAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTC
25074806 GACCTGCCCTACTGCAATTTCAAGGAGATAAGGTTTGCAATGA-TCTGCTCTACTACAACTTCAG
131 GACCTGCCCTACTGCAATTTCAAGGAGATAAGGTTTGCAAT-ATTCTGCTCTACTACAACTTCAG
*
25074870 AGAGATAAGATCTACTATCTTTAGTCTGCTCTACTGCACCTTCAGGGAGATAAGACTTGTAATCT
195 AGAGATAAGATCTACTATCTTTAGTCTGCTCCACTGCACCTTCAGGGAGATAAGACTTGTAATCT
25074935 CAACATGCTCC
260 CAACATGCTCC
*
25074946 ACTGTAACTTCAGAGAGACAAGATCTGTAATTTATAGCTTCAATCTATTCCACTATAACTTCAAG
1 ACTGCAACTTCAGAGAGACAAGATCTGTAATTTATAGCTTCAATCTATTCCACTATAACTTCAAG
*
25075011 AAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAGATAAGACTTGTAACTTC
66 AAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTC
* * *
25075076 GACCTGCCCTATTGCAATTTCAGGGAGATAAGGTTTGCGATATTCTGCTCTACTACAACTTCAGA
131 GACCTGCCCTACTGCAATTTCAAGGAGATAAGGTTTGCAATATTCTGCTCTACTACAACTTCAGA
*
25075141 GAGATAAGATCTACTATCTTTAGTCTGCTCCACTGCACCTTTAGGGAGATAAGACTTGTAATCTC
196 GAGATAAGATCTACTATCTTTAGTCTGCTCCACTGCACCTTCAGGGAGATAAGACTTGTAATCTC
25075206 AACATGCTCC
261 AACATGCTCC
* *
25075216 ACTACAACTTCAGGGAGA
1 ACTGCAACTTCAGAGAGA
25075234 TAAGGCTGGT
Statistics
Matches: 272, Mismatches: 15, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
269 1 0.00
270 271 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (270 bp):
ACTGCAACTTCAGAGAGACAAGATCTGTAATTTATAGCTTCAATCTATTCCACTATAACTTCAAG
AAAATAAGATTCGCTATCTTCAGTCTACTCCACTGCAACTTCAGGGAAATAAGACTTGTAACTTC
GACCTGCCCTACTGCAATTTCAAGGAGATAAGGTTTGCAATATTCTGCTCTACTACAACTTCAGA
GAGATAAGATCTACTATCTTTAGTCTGCTCCACTGCACCTTCAGGGAGATAAGACTTGTAATCTC
AACATGCTCC
Found at i:25075492 original size:50 final size:51
Alignment explanation
Indices: 25075358--25075495 Score: 206
Period size: 50 Copynumber: 2.7 Consensus size: 51
25075348 CAGTCTTAAC
* *
25075358 GCTAGGGAGATAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAAT
1 GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAAT
* *
25075409 GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTACT-CGTTGCAAT
1 GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAAT
* * *
25075459 GCTAGGGAAACAAGATTCGCTACCTTTACCTTTAATC
1 GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATC
25075496 AGTTCCACTG
Statistics
Matches: 80, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
50 41 0.51
51 39 0.49
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (51 bp):
GCTAGGGAAACAAGATTCGCTGCCTTCAGCTTTAATCTACTCCGCTACAAT
Done.