Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 79 of 163
Found at i:25696741 original size:11 final size:11
Alignment explanation
Indices: 25696725--25696751 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
25696715 GCTTATGCTT
25696725 AAATTGTATCC
1 AAATTGTATCC
25696736 AAATTGTATCC
1 AAATTGTATCC
25696747 AAATT
1 AAATT
25696752 AAGTTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.41, C:0.15, G:0.07, T:0.37
Consensus pattern (11 bp):
AAATTGTATCC
Found at i:25699877 original size:44 final size:43
Alignment explanation
Indices: 25699829--25700031 Score: 294
Period size: 44 Copynumber: 4.8 Consensus size: 43
25699819 CTTCCCTCTT
*
25699829 CTTCTTCTTTCTTTTTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTT-TTTCTTTCTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
25699873 CTTCTTTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTC-TCTTCTCCTTTCCTTTTCTTTC
25699917 CTTCTTTTTCTTTCTTTTTTCTTCTTCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTC-TCTTCTCCTTTCCTTTTCTTTC
25699961 CTTCTTTTTCTTTC---TTTC-C-TCTCCTTTCCTTTTCTTTC
1 CTTCTTTTTCTTTCTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
* *
25699999 CTT-TTCTTTCTTTCTTTCTT-TCTTCTTCTTTCC
1 CTTCTT-TTTCTTTCTTTTTTCTCTTCTCCTTTCC
25700032 CTCTCCTTCT
Statistics
Matches: 149, Mismatches: 3, Indels: 16
0.89 0.02 0.10
Matches are distributed among these distances:
37 2 0.01
38 30 0.20
39 1 0.01
41 7 0.05
42 9 0.06
43 14 0.09
44 86 0.58
ACGTcount: A:0.00, C:0.31, G:0.00, T:0.69
Consensus pattern (43 bp):
CTTCTTTTTCTTTCTTTTTTCTCTTCTCCTTTCCTTTTCTTTC
Found at i:25699959 original size:10 final size:10
Alignment explanation
Indices: 25699794--25700031 Score: 103
Period size: 10 Copynumber: 24.2 Consensus size: 10
25699784 ATAAAAATTA
*
25699794 CCTTTTTTTT
1 CCTTTTCTTT
* *
25699804 TCTTTTTTTT
1 CCTTTTCTTT
*
25699814 CC-TTTCTTC
1 CCTTTTCTTT
*
25699823 CCTCTTC-TT
1 CCTTTTCTTT
*
25699832 CTTCTTTCTTT
1 CCT-TTTCTTT
25699843 --TTTT-TTT
1 CCTTTTCTTT
*
25699850 CTCTTCTCCTTT
1 C-CTT-TTCTTT
25699862 CCTTTTCTTT
1 CCTTTTCTTT
25699872 CCTTCTT-TTT
1 CCTT-TTCTTT
25699882 -C-TTTCTTT
1 CCTTTTCTTT
*
25699890 -TTTCTTCTTCT
1 CCTT-TTCTT-T
*
25699901 CCTTTCCTTT
1 CCTTTTCTTT
* *
25699911 TC-TTTCCTT
1 CCTTTTCTTT
*
25699920 CTTTTTCTTT
1 CCTTTTCTTT
25699930 -CTTTT-TTCT
1 CCTTTTCTT-T
* *
25699939 TCTTCTCCTTT
1 CCTT-TTCTTT
25699950 CCTTTTCTTT
1 CCTTTTCTTT
25699960 CCTTCTT-TTT
1 CCTT-TTCTTT
25699970 -C-TTTCTTT
1 CCTTTTCTTT
* *
25699978 CCTCTCCTTT
1 CCTTTTCTTT
25699988 CCTTTTCTTT
1 CCTTTTCTTT
25699998 CCTTTTCTTT
1 CCTTTTCTTT
*
25700008 CTTTCTTTCTTT
1 C-CT-TTTCTTT
25700020 -CTTCTTCTTT
1 CCTT-TTCTTT
25700030 CC
1 CC
25700032 CTCTCCTTCT
Statistics
Matches: 172, Mismatches: 29, Indels: 53
0.68 0.11 0.21
Matches are distributed among these distances:
7 7 0.04
8 13 0.08
9 26 0.15
10 89 0.52
11 22 0.13
12 15 0.09
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (10 bp):
CCTTTTCTTT
Found at i:25700122 original size:27 final size:27
Alignment explanation
Indices: 25700074--25700141 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
25700064 TTATAAGGTT
25700074 GGTGCCGCCAA-CTAGTATGGCACCATC
1 GGTGCCGCCAATC-AGTATGGCACCATC
* *
25700101 GGTGCCGCCAATCAGT-TAGGCACCTTT
1 GGTGCCGCCAATCAGTAT-GGCACCATC
25700128 GGTGCCGCCAATCA
1 GGTGCCGCCAATCA
25700142 AAAACCCTCC
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
26 1 0.03
27 35 0.95
28 1 0.03
ACGTcount: A:0.21, C:0.32, G:0.26, T:0.21
Consensus pattern (27 bp):
GGTGCCGCCAATCAGTATGGCACCATC
Found at i:25706148 original size:27 final size:28
Alignment explanation
Indices: 25706118--25706176 Score: 84
Period size: 29 Copynumber: 2.1 Consensus size: 28
25706108 TAAATATAGT
*
25706118 AATG-AAGAATTTATAGTATACGATTAA
1 AATGCAAGAATTTATAGTATACAATTAA
*
25706145 AATGCTAATAATTTATAGTATACAATTAA
1 AATGC-AAGAATTTATAGTATACAATTAA
25706174 AAT
1 AAT
25706177 ATTATAAATA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
27 4 0.14
29 24 0.86
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (28 bp):
AATGCAAGAATTTATAGTATACAATTAA
Found at i:25708275 original size:21 final size:20
Alignment explanation
Indices: 25708242--25708280 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
25708232 CACTCGCACT
25708242 TTTATTGAAGAGCCACAGCA
1 TTTATTGAAGAGCCACAGCA
*
25708262 TTTATATGTAGAGCCACAG
1 TTTAT-TGAAGAGCCACAG
25708281 TATATGAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.28
Consensus pattern (20 bp):
TTTATTGAAGAGCCACAGCA
Found at i:25711815 original size:72 final size:72
Alignment explanation
Indices: 25711692--25711930 Score: 374
Period size: 72 Copynumber: 3.3 Consensus size: 72
25711682 AAAATCATAT
**
25711692 ATAAACAACTATTGATAAAACTA-ATTTA-GTATAAATAAGTAGAACATAAATTCAATATCCAAA
1 ATAAACAACTATTGATAAAACTAGA-TTACACATAAATAAGTAGAACATAAATTCAATATCCAAA
*
25711755 GACCAAAC
65 AACCAAAC
*
25711763 ATAAACAACTATTAATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
25711828 ACCAAAC
66 ACCAAAC
* * * *
25711835 ATAATCAACCATTGATAAAACTAGATTACACATAAATAAGTATAACATAAATTCAATATCGAAAA
1 ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
25711900 ACCAAAC
66 ACCAAAC
*
25711907 ATAAATAACTATTGATAAAACTAG
1 ATAAACAACTATTGATAAAACTAG
25711931 TTTAGCATTG
Statistics
Matches: 154, Mismatches: 12, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
71 25 0.16
72 129 0.84
ACGTcount: A:0.55, C:0.15, G:0.06, T:0.24
Consensus pattern (72 bp):
ATAAACAACTATTGATAAAACTAGATTACACATAAATAAGTAGAACATAAATTCAATATCCAAAA
ACCAAAC
Found at i:25718972 original size:48 final size:47
Alignment explanation
Indices: 25718917--25719080 Score: 112
Period size: 48 Copynumber: 3.6 Consensus size: 47
25718907 AAGGAGGAAG
25718917 TACTAGCAGTTTAATAATCTGCAAACATTGGTGGTTTATCCATAAACT
1 TACTAGCAGTTT-ATAATCTGCAAACATTGGTGGTTTATCCATAAACT
* * * * * * *
25718965 TACTAGCAATTT-TCATTTGCAAACACATT-GT-G--CATTCA-CAACC
1 TACTAGCAGTTTATAATCTGC-AA-ACATTGGTGGTTTATCCATAAACT
* * *
25719008 TACTGGCAGTTTATTAA-CTTGCAAACACTGGTGGTTTGTCCATAAACT
1 TACTAGCAGTTTA-TAATC-TGCAAACATTGGTGGTTTATCCATAAACT
*
25719056 TACTAGCAGCTTT-T-ATCAGCAAACA
1 TACTAGCAG-TTTATAATCTGCAAACA
25719081 CGTTGTGCAT
Statistics
Matches: 85, Mismatches: 19, Indels: 26
0.65 0.15 0.20
Matches are distributed among these distances:
43 17 0.20
44 8 0.09
45 6 0.07
46 15 0.18
47 9 0.11
48 27 0.32
49 3 0.04
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.34
Consensus pattern (47 bp):
TACTAGCAGTTTATAATCTGCAAACATTGGTGGTTTATCCATAAACT
Found at i:25719078 original size:91 final size:91
Alignment explanation
Indices: 25718917--25719146 Score: 275
Period size: 91 Copynumber: 2.5 Consensus size: 91
25718907 AAGGAGGAAG
* * *
25718917 TACTAGCAGTTTAATAA-TCTGCAAACATTGGTGGTTTATCCATAAACTTACTAGCAATTTTCAT
1 TACTGGCAGTTTATTAACT-TGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCAT
**
25718981 TTGCAAACACATTGTGCATTCACAACC
65 CAGCAAACACATTGTGCATTCACAACC
* *
25719008 TACTGGCAGTTTATTAACTTGCAAACACTGGTGGTTTGTCCATAAACTTACTAGCAGCTTTT-AT
1 TACTGGCAGTTTATTAACTTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCA-ATTTTCAT
*
25719072 CAGCAAACACGTTGTGCATTCACAACC
65 CAGCAAACACATTGTGCATTCACAACC
* ** * * ** * *
25719099 TATTGGCAGCATATAAACCTGCAAACACTGAAGGTTCATCCACAAACT
1 TACTGGCAGTTTATTAACTTGCAAACACTGGTGGTTTATCCATAAACT
25719147 GGAGTGTCCG
Statistics
Matches: 119, Mismatches: 18, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
91 114 0.96
92 5 0.04
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.31
Consensus pattern (91 bp):
TACTGGCAGTTTATTAACTTGCAAACACTGGTGGTTTATCCATAAACTTACTAGCAATTTTCATC
AGCAAACACATTGTGCATTCACAACC
Found at i:25722086 original size:95 final size:95
Alignment explanation
Indices: 25721923--25722110 Score: 304
Period size: 95 Copynumber: 2.0 Consensus size: 95
25721913 AACCGTTAAA
* * *
25721923 GAGTTTTCATATGTATTTCCCGATGAGTTATTGAGGTTATCTCTAGATCGTGAGAGAGAATTCAG
1 GAGTTTTCATATGTATTTCCCGATGAGTTACTGAGGTTACCTCCAGATCGTGAGAGAGAATTCAG
25721988 AATTGAATTGTTGCCAAGAATCGCTCCAGT
66 AATTGAATTGTTGCCAAGAATCGCTCCAGT
* * * *
25722018 GAGTTTTCATATGTGTTTCCCGATGAGTTACTGAGGTTACCTCCGGGTCGTGAGGGAGAATTCAG
1 GAGTTTTCATATGTATTTCCCGATGAGTTACTGAGGTTACCTCCAGATCGTGAGAGAGAATTCAG
*
25722083 AATTGAATTGTTGCCAGGAATCGCTCCA
66 AATTGAATTGTTGCCAAGAATCGCTCCA
25722111 ATGTCCATTG
Statistics
Matches: 85, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 85 1.00
ACGTcount: A:0.25, C:0.16, G:0.26, T:0.33
Consensus pattern (95 bp):
GAGTTTTCATATGTATTTCCCGATGAGTTACTGAGGTTACCTCCAGATCGTGAGAGAGAATTCAG
AATTGAATTGTTGCCAAGAATCGCTCCAGT
Found at i:25724992 original size:20 final size:21
Alignment explanation
Indices: 25724951--25724993 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
25724941 AATTCTCAAT
**
25724951 TTAAAATTTTTAATTCAATTA
1 TTAAAATTGATAATTCAATTA
25724972 TTAAAATTGATAATT-AATTA
1 TTAAAATTGATAATTCAATTA
25724992 TT
1 TT
25724994 GATGAAAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (21 bp):
TTAAAATTGATAATTCAATTA
Found at i:25738313 original size:794 final size:794
Alignment explanation
Indices: 25736785--25738372 Score: 3176
Period size: 794 Copynumber: 2.0 Consensus size: 794
25736775 CACCAATGCA
25736785 CAAAACCCCATAACCAACCTACCTCAAAAGTAAAAAGGTCAATTACCCAAGATTAAAATTTTCGT
1 CAAAACCCCATAACCAACCTACCTCAAAAGTAAAAAGGTCAATTACCCAAGATTAAAATTTTCGT
25736850 TTTTTTATTATATATTTTACTAATCAATTATGTTGTAGATTTTTTTATAATGTTATTATTATTAA
66 TTTTTTATTATATATTTTACTAATCAATTATGTTGTAGATTTTTTTATAATGTTATTATTATTAA
25736915 AAAAACATATAGATTAACATTAAAAAATTTTAAAACCATTATTTAACAAAAAAAAATTAAGCTGA
131 AAAAACATATAGATTAACATTAAAAAATTTTAAAACCATTATTTAACAAAAAAAAATTAAGCTGA
25736980 AGTTCGGTGGACAAGTCTAGGGTAGTTTTTTTTAGTTAGCAGTTATAATTTGTTTTTAATTTTCT
196 AGTTCGGTGGACAAGTCTAGGGTAGTTTTTTTTAGTTAGCAGTTATAATTTGTTTTTAATTTTCT
25737045 TTAGCTTTTGAAATTTCTTTTATATATATTAAAAATTCTATGATATGTGTATTTGTGTGAAAATC
261 TTAGCTTTTGAAATTTCTTTTATATATATTAAAAATTCTATGATATGTGTATTTGTGTGAAAATC
25737110 ATATATTTAGAAAATAAATATGTGTTTAAAAATAACATATAATTATCAACTAATAAAAATAATTA
326 ATATATTTAGAAAATAAATATGTGTTTAAAAATAACATATAATTATCAACTAATAAAAATAATTA
25737175 AAATATATAAATTAATTAAAATAAAACTTTAGTTAAATGATAAATTTAAAATTTCTTTTAATATA
391 AAATATATAAATTAATTAAAATAAAACTTTAGTTAAATGATAAATTTAAAATTTCTTTTAATATA
25737240 ATTGGCATGAGTTCAGATATCACCTTATACATATTCTTTAAATATAAAAGATTATTTTTGTAATT
456 ATTGGCATGAGTTCAGATATCACCTTATACATATTCTTTAAATATAAAAGATTATTTTTGTAATT
25737305 TAGGGTTTTTAATAATTTTGTCAATCCATATATATATATAAACAATTCTTTTAGAAATAATAAGG
521 TAGGGTTTTTAATAATTTTGTCAATCCATATATATATATAAACAATTCTTTTAGAAATAATAAGG
25737370 GATAATTTAGGTATTAGAAATTAGGAGTAAACGTAATTTAAGTATTAAAAGTTAATCGCAATTTA
586 GATAATTTAGGTATTAGAAATTAGGAGTAAACGTAATTTAAGTATTAAAAGTTAATCGCAATTTA
25737435 GATATTTTGACAAAAGCTAATTAATTATTTTAATTATTTCTGCTTTTGATTGTTTTTTTTTTATT
651 GATATTTTGACAAAAGCTAATTAATTATTTTAATTATTTCTGCTTTTGATTGTTTTTTTTTTATT
25737500 TGTTGAAAGTATATCTGGTCCAAGGTCGACCTTCAATTTTCTTTTTGCTGCTTTTTTATTCTCTT
716 TGTTGAAAGTATATCTGGTCCAAGGTCGACCTTCAATTTTCTTTTTGCTGCTTTTTTATTCTCTT
25737565 TTTTTATTACTATT
781 TTTTTATTACTATT
25737579 CAAAACCCCATAACCAACCTACCTCAAAAGTAAAAAGGTCAATTACCCAAGATTAAAATTTTCGT
1 CAAAACCCCATAACCAACCTACCTCAAAAGTAAAAAGGTCAATTACCCAAGATTAAAATTTTCGT
25737644 TTTTTTATTATATATTTTACTAATCAATTATGTTGTAGATTTTTTTATAATGTTATTATTATTAA
66 TTTTTTATTATATATTTTACTAATCAATTATGTTGTAGATTTTTTTATAATGTTATTATTATTAA
25737709 AAAAACATATAGATTAACATTAAAAAATTTTAAAACCATTATTTAACAAAAAAAAATTAAGCTGA
131 AAAAACATATAGATTAACATTAAAAAATTTTAAAACCATTATTTAACAAAAAAAAATTAAGCTGA
25737774 AGTTCGGTGGACAAGTCTAGGGTAGTTTTTTTTAGTTAGCAGTTATAATTTGTTTTTAATTTTCT
196 AGTTCGGTGGACAAGTCTAGGGTAGTTTTTTTTAGTTAGCAGTTATAATTTGTTTTTAATTTTCT
25737839 TTAGCTTTTGAAATTTCTTTTATATATATTAAAAATTCTATGATATGTGTATTTGTGTGAAAATC
261 TTAGCTTTTGAAATTTCTTTTATATATATTAAAAATTCTATGATATGTGTATTTGTGTGAAAATC
25737904 ATATATTTAGAAAATAAATATGTGTTTAAAAATAACATATAATTATCAACTAATAAAAATAATTA
326 ATATATTTAGAAAATAAATATGTGTTTAAAAATAACATATAATTATCAACTAATAAAAATAATTA
25737969 AAATATATAAATTAATTAAAATAAAACTTTAGTTAAATGATAAATTTAAAATTTCTTTTAATATA
391 AAATATATAAATTAATTAAAATAAAACTTTAGTTAAATGATAAATTTAAAATTTCTTTTAATATA
25738034 ATTGGCATGAGTTCAGATATCACCTTATACATATTCTTTAAATATAAAAGATTATTTTTGTAATT
456 ATTGGCATGAGTTCAGATATCACCTTATACATATTCTTTAAATATAAAAGATTATTTTTGTAATT
25738099 TAGGGTTTTTAATAATTTTGTCAATCCATATATATATATAAACAATTCTTTTAGAAATAATAAGG
521 TAGGGTTTTTAATAATTTTGTCAATCCATATATATATATAAACAATTCTTTTAGAAATAATAAGG
25738164 GATAATTTAGGTATTAGAAATTAGGAGTAAACGTAATTTAAGTATTAAAAGTTAATCGCAATTTA
586 GATAATTTAGGTATTAGAAATTAGGAGTAAACGTAATTTAAGTATTAAAAGTTAATCGCAATTTA
25738229 GATATTTTGACAAAAGCTAATTAATTATTTTAATTATTTCTGCTTTTGATTGTTTTTTTTTTATT
651 GATATTTTGACAAAAGCTAATTAATTATTTTAATTATTTCTGCTTTTGATTGTTTTTTTTTTATT
25738294 TGTTGAAAGTATATCTGGTCCAAGGTCGACCTTCAATTTTCTTTTTGCTGCTTTTTTATTCTCTT
716 TGTTGAAAGTATATCTGGTCCAAGGTCGACCTTCAATTTTCTTTTTGCTGCTTTTTTATTCTCTT
25738359 TTTTTATTACTATT
781 TTTTTATTACTATT
25738373 TTCTTTTTTT
Statistics
Matches: 794, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
794 794 1.00
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (794 bp):
CAAAACCCCATAACCAACCTACCTCAAAAGTAAAAAGGTCAATTACCCAAGATTAAAATTTTCGT
TTTTTTATTATATATTTTACTAATCAATTATGTTGTAGATTTTTTTATAATGTTATTATTATTAA
AAAAACATATAGATTAACATTAAAAAATTTTAAAACCATTATTTAACAAAAAAAAATTAAGCTGA
AGTTCGGTGGACAAGTCTAGGGTAGTTTTTTTTAGTTAGCAGTTATAATTTGTTTTTAATTTTCT
TTAGCTTTTGAAATTTCTTTTATATATATTAAAAATTCTATGATATGTGTATTTGTGTGAAAATC
ATATATTTAGAAAATAAATATGTGTTTAAAAATAACATATAATTATCAACTAATAAAAATAATTA
AAATATATAAATTAATTAAAATAAAACTTTAGTTAAATGATAAATTTAAAATTTCTTTTAATATA
ATTGGCATGAGTTCAGATATCACCTTATACATATTCTTTAAATATAAAAGATTATTTTTGTAATT
TAGGGTTTTTAATAATTTTGTCAATCCATATATATATATAAACAATTCTTTTAGAAATAATAAGG
GATAATTTAGGTATTAGAAATTAGGAGTAAACGTAATTTAAGTATTAAAAGTTAATCGCAATTTA
GATATTTTGACAAAAGCTAATTAATTATTTTAATTATTTCTGCTTTTGATTGTTTTTTTTTTATT
TGTTGAAAGTATATCTGGTCCAAGGTCGACCTTCAATTTTCTTTTTGCTGCTTTTTTATTCTCTT
TTTTTATTACTATT
Found at i:25738377 original size:19 final size:19
Alignment explanation
Indices: 25738350--25738388 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
25738340 GCTGCTTTTT
25738350 TATTCTCTTTTTTTATTAC
1 TATTCTCTTTTTTTATTAC
* *
25738369 TATTTTCTTTTTTTTTTAC
1 TATTCTCTTTTTTTATTAC
25738388 T
1 T
25738389 CAAATGATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.13, C:0.13, G:0.00, T:0.74
Consensus pattern (19 bp):
TATTCTCTTTTTTTATTAC
Found at i:25738417 original size:24 final size:25
Alignment explanation
Indices: 25738370--25738417 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
25738360 TTTTATTACT
* * *
25738370 ATTTTCTTTTTTTTTTACTCAAATG
1 ATTTTCTTTTCTTTTTAATAAAATG
25738395 ATTTT-TTTTCTTTTTAATAAAAT
1 ATTTTCTTTTCTTTTTAATAAAAT
25738418 ATATATTATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.25, C:0.08, G:0.02, T:0.65
Consensus pattern (25 bp):
ATTTTCTTTTCTTTTTAATAAAATG
Found at i:25739440 original size:31 final size:32
Alignment explanation
Indices: 25739405--25739473 Score: 86
Period size: 32 Copynumber: 2.2 Consensus size: 32
25739395 ATTAGTTCCT
* *
25739405 AAATTTGAGATTTTTTT-TTAATTTGGTACTG
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
* * *
25739436 AAATTTGACCTTTTTTTCTTAAGTTGGTAGTT
1 AAATTTGACATTTTTTTCTTAAGTTGGTACTG
25739468 AAATTT
1 AAATTT
25739474 ATTGGGATCC
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 15 0.47
32 17 0.53
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (32 bp):
AAATTTGACATTTTTTTCTTAAGTTGGTACTG
Found at i:25740959 original size:19 final size:19
Alignment explanation
Indices: 25740929--25740981 Score: 61
Period size: 19 Copynumber: 2.7 Consensus size: 19
25740919 GTCAAGTTTT
*
25740929 TCCAAAATAAATTTAAAAA
1 TCCAAAAAAAATTTAAAAA
** *
25740948 TTTAAAAAAAATTGAAAAA
1 TCCAAAAAAAATTTAAAAA
25740967 TCCAAAGAAAAATTT
1 TCCAAA-AAAAATTT
25740982 CAACTGAGCC
Statistics
Matches: 26, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
19 19 0.73
20 7 0.27
ACGTcount: A:0.62, C:0.08, G:0.04, T:0.26
Consensus pattern (19 bp):
TCCAAAAAAAATTTAAAAA
Found at i:25743359 original size:49 final size:49
Alignment explanation
Indices: 25743238--25743366 Score: 154
Period size: 49 Copynumber: 2.6 Consensus size: 49
25743228 AGGTCCCCCA
* * *
25743238 TAAGACCATGTCTGAGACATGGCATGGGCACCGATATGAGAACTCCCATG
1 TAAGACCATGTCTGAGACATGGCATTGGCA-CGACAGGAGAACTCCCATG
* *
25743288 TAAGACCATATCTGAGATATGGCATTGGCA-GTACAGGA-AACATCCCATG
1 TAAGACCATGTCTGAGACATGGCATTGGCACG-ACAGGAGAAC-TCCCATG
* *
25743337 TAAGACCATGTCTGGGACATGGCTTTGGCA
1 TAAGACCATGTCTGAGACATGGCATTGGCA
25743367 TGTTATTATT
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
48 4 0.06
49 37 0.54
50 27 0.40
ACGTcount: A:0.30, C:0.22, G:0.26, T:0.22
Consensus pattern (49 bp):
TAAGACCATGTCTGAGACATGGCATTGGCACGACAGGAGAACTCCCATG
Found at i:25747961 original size:17 final size:17
Alignment explanation
Indices: 25747939--25747973 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
25747929 GACTTGACAA
25747939 TGCAGTCAATTCATAAG
1 TGCAGTCAATTCATAAG
25747956 TGCAGTCAATTCATAAG
1 TGCAGTCAATTCATAAG
25747973 T
1 T
25747974 TGTATTGGTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.31
Consensus pattern (17 bp):
TGCAGTCAATTCATAAG
Found at i:25750222 original size:24 final size:25
Alignment explanation
Indices: 25750195--25750241 Score: 60
Period size: 24 Copynumber: 1.9 Consensus size: 25
25750185 TCTTTTGTGC
* *
25750195 AAGATTGCTTTCTTGT-GATTTTTA
1 AAGATAGCTTTCTTCTCGATTTTTA
*
25750219 AAGATAGTTTTCTTCTCGATTTT
1 AAGATAGCTTTCTTCTCGATTTT
25750242 CTTTAAGGAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 13 0.68
25 6 0.32
ACGTcount: A:0.21, C:0.11, G:0.15, T:0.53
Consensus pattern (25 bp):
AAGATAGCTTTCTTCTCGATTTTTA
Found at i:25750794 original size:89 final size:89
Alignment explanation
Indices: 25750643--25750821 Score: 349
Period size: 89 Copynumber: 2.0 Consensus size: 89
25750633 GAAAATTCAA
25750643 ATCCAACATTTCATGAGTATTTTTGTGAAATTCATGCTTATGAGTGTCAAGGTTGAGGGTCTAAT
1 ATCCAACATTTCATGAGTATTTTTGTGAAATTCATGCTTATGAGTGTCAAGGTTGAGGGTCTAAT
25750708 AATAGATTGACAAATGACATATAG
66 AATAGATTGACAAATGACATATAG
25750732 ATCCAACATTTCATGAGTATTTTTGTGAAATTCATGCTTATGAGTGTCAAGGTTGAGGGTCTAAT
1 ATCCAACATTTCATGAGTATTTTTGTGAAATTCATGCTTATGAGTGTCAAGGTTGAGGGTCTAAT
*
25750797 AATAGATTGACAGATGACATATAG
66 AATAGATTGACAAATGACATATAG
25750821 A
1 A
25750822 ATTATTACAA
Statistics
Matches: 89, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
89 89 1.00
ACGTcount: A:0.34, C:0.11, G:0.21, T:0.35
Consensus pattern (89 bp):
ATCCAACATTTCATGAGTATTTTTGTGAAATTCATGCTTATGAGTGTCAAGGTTGAGGGTCTAAT
AATAGATTGACAAATGACATATAG
Found at i:25751164 original size:39 final size:39
Alignment explanation
Indices: 25751108--25751203 Score: 122
Period size: 39 Copynumber: 2.4 Consensus size: 39
25751098 TAGAATCAAA
* *
25751108 ATAGTAAAACTACTCCTATTCACCCTTTACTTCCTATAAT
1 ATAG-AAAAATACTCCTATTCACCCTCTACTTCCTATAAT
* *
25751148 ATA-AAAAATGACTCCTATTCATCCTCTACTTTCTATAAT
1 ATAGAAAAAT-ACTCCTATTCACCCTCTACTTCCTATAAT
*
25751187 ATAGAAAACTACTCCTA
1 ATAGAAAAATACTCCTA
25751204 AAATAAGTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
38 5 0.10
39 36 0.73
40 8 0.16
ACGTcount: A:0.36, C:0.25, G:0.03, T:0.35
Consensus pattern (39 bp):
ATAGAAAAATACTCCTATTCACCCTCTACTTCCTATAAT
Found at i:25754666 original size:30 final size:24
Alignment explanation
Indices: 25754604--25754654 Score: 102
Period size: 24 Copynumber: 2.1 Consensus size: 24
25754594 CCTGTCAGAC
25754604 CATCAACCCTCATTGCAGTAGTAG
1 CATCAACCCTCATTGCAGTAGTAG
25754628 CATCAACCCTCATTGCAGTAGTAG
1 CATCAACCCTCATTGCAGTAGTAG
25754652 CAT
1 CAT
25754655 TCGCACGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (24 bp):
CATCAACCCTCATTGCAGTAGTAG
Found at i:25756494 original size:34 final size:34
Alignment explanation
Indices: 25756445--25756509 Score: 103
Period size: 34 Copynumber: 1.9 Consensus size: 34
25756435 TCCTTCTAAC
*
25756445 ATACATATAATGTATTCAACAATTGATAATAGTT
1 ATACATATAACGTATTCAACAATTGATAATAGTT
* *
25756479 ATACGTATAACGTATTCAACAATTGGTAATA
1 ATACATATAACGTATTCAACAATTGATAATA
25756510 ACTATACAGG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.35
Consensus pattern (34 bp):
ATACATATAACGTATTCAACAATTGATAATAGTT
Found at i:25756516 original size:34 final size:34
Alignment explanation
Indices: 25756441--25756517 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
25756431 AACTTCCTTC
*
25756441 TAAC-ATACATATAATGTATTCAACAATTGATAA
1 TAACTATACATATAACGTATTCAACAATTGATAA
** * *
25756474 TAGTTATACGTATAACGTATTCAACAATTGGTAA
1 TAACTATACATATAACGTATTCAACAATTGATAA
25756508 TAACTATACA
1 TAACTATACA
25756518 GGCATAATAT
Statistics
Matches: 35, Mismatches: 8, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
33 2 0.06
34 33 0.94
ACGTcount: A:0.44, C:0.13, G:0.09, T:0.34
Consensus pattern (34 bp):
TAACTATACATATAACGTATTCAACAATTGATAA
Found at i:25757059 original size:60 final size:57
Alignment explanation
Indices: 25756978--25757144 Score: 210
Period size: 60 Copynumber: 2.9 Consensus size: 57
25756968 AAGGCTTAAC
* *
25756978 TTTTTTTTAGTCCAAGTTAGTCCTTGAACTTGACAATTATTCTCACATTGAGCTTGGACTT
1 TTTTTTTTA-TCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTGAGCTT-GA--A
*
25757039 TTTTTTTTATCCAAGTTAGTCTTTGAACTT-AGCAATTATTCTCACATTGAGCTTGAA
1 TTTTTTTTATCCAAGTTAGTCATTGAACTTGA-CAATTATTCTCACATTGAGCTTGAA
* * * * *
25757096 ATTTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTG
1 TTTTTTTTATCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTG
25757145 GAGGCATAAA
Statistics
Matches: 96, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
57 41 0.43
58 1 0.01
59 3 0.03
60 42 0.44
61 9 0.09
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.45
Consensus pattern (57 bp):
TTTTTTTTATCCAAGTTAGTCATTGAACTTGACAATTATTCTCACATTGAGCTTGAA
Found at i:25757132 original size:57 final size:58
Alignment explanation
Indices: 25756979--25757144 Score: 201
Period size: 57 Copynumber: 2.8 Consensus size: 58
25756969 AGGCTTAACT
* **
25756979 TTTTTTTAGTCCAAGTTAGTCCTTGAACTTGACAATTATTCTCACATTGAGCTTGGACTTT
1 TTTTTTTA-TCCAAGTTAGTCATTGAAC-TGACAATTATTCTCACATTGAGCTTGGAC-AA
* *
25757040 TTTTTTTATCCAAGTTAGTCTTTGAACTTAGCAATTATTCTCACATTGAGCTT-GA-AA
1 TTTTTTTATCCAAGTTAGTCATTGAACTGA-CAATTATTCTCACATTGAGCTTGGACAA
* * *
25757097 TTTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTG
1 TTTTTTTATCCAAGTTAGTCATTGAACT-GACAATTATTCTCACATTG
25757145 GAGGCATAAA
Statistics
Matches: 94, Mismatches: 9, Indels: 8
0.85 0.08 0.07
Matches are distributed among these distances:
57 41 0.44
58 1 0.01
59 4 0.04
60 40 0.43
61 8 0.09
ACGTcount: A:0.26, C:0.16, G:0.14, T:0.45
Consensus pattern (58 bp):
TTTTTTTATCCAAGTTAGTCATTGAACTGACAATTATTCTCACATTGAGCTTGGACAA
Found at i:25757378 original size:264 final size:265
Alignment explanation
Indices: 25756893--25757380 Score: 662
Period size: 264 Copynumber: 1.8 Consensus size: 265
25756883 ATATAAGAAA
* *
25756893 TATTTCTTTACAACATTATAATAAAAAGGGTTAATGCAATATTTTGGGCCTAAACTTGACAAGTG
1 TATTTCTTTACAACATTATAATAAAAAGGGTTAATGCAATAGTTGGGGCCTAAACTTGACAAGTG
* *
25756958 TTCCCATATTAAGGCTTAACTTTTTTTTAGTCCAAGTTAGTCCTTGAACTTGACAATTATTCTCA
66 TTCCCATATTAAGGCTTAACTTTTTTTTAGTCCAAGTTAGTACTTAAACTTGACAATTATTCTCA
** * ** * *
25757023 CATTGAGCTTGGACTTTTTTTTTTATCCAAGTTAGTCTTTGAACTTAGCAATTATTCTCACATTG
131 CATTGAGCTTAAAC-TTTTTTTTGATCCAAGTTAACCCTTGAACTTAGAAATTATTCTCACATTG
25757088 AGCTTGAAATTTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTGGAGGCATA
195 AGCTTGAAATTTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTGGAGGCATA
25757153 AATTAT
260 AATTAT
* * * *
25757159 TATTT-TTTACAACATTATAATAAAAAGGGTTAATGCATTGGTTGGGGTCTAAACTTG-TAAGTG
1 TATTTCTTTACAACATTATAATAAAAAGGGTTAATGCAATAGTTGGGGCCTAAACTTGACAAGTG
* * * * * *
25757222 TTCCTATATTAAGGTTTACCTTTTTTTTAGTCCAAGTTTGTATTTAAACTTTG-TAATTATTCTC
66 TTCCCATATTAAGGCTTAACTTTTTTTTAGTCCAAGTTAGTACTTAAAC-TTGACAATTATTCTC
*
25757286 ACATTGAGGC-TAAAC-TTTTTTTGGTCCAAGTTAACCCTTGAACTTAGAAATTATTCTCACATT
130 ACATTGA-GCTTAAACTTTTTTTTGATCCAAGTTAACCCTTGAACTTAGAAATTATTCTCACATT
* * * *
25757349 GTGACTTGAACCTTTTTTTTTCCAAGTTAGTC
194 GAG-CTTGAA-ATTTTTTTATCAAAGTTAGTC
25757381 CACGATATTT
Statistics
Matches: 192, Mismatches: 26, Indels: 10
0.84 0.11 0.04
Matches are distributed among these distances:
262 44 0.23
263 6 0.03
264 85 0.44
265 52 0.27
266 5 0.03
ACGTcount: A:0.29, C:0.15, G:0.14, T:0.42
Consensus pattern (265 bp):
TATTTCTTTACAACATTATAATAAAAAGGGTTAATGCAATAGTTGGGGCCTAAACTTGACAAGTG
TTCCCATATTAAGGCTTAACTTTTTTTTAGTCCAAGTTAGTACTTAAACTTGACAATTATTCTCA
CATTGAGCTTAAACTTTTTTTTGATCCAAGTTAACCCTTGAACTTAGAAATTATTCTCACATTGA
GCTTGAAATTTTTTTATCAAAGTTAGTCATTGAACTGGACAATTGTTTTCACATTGGAGGCATAA
ATTAT
Found at i:25759547 original size:27 final size:27
Alignment explanation
Indices: 25759503--25759744 Score: 287
Period size: 27 Copynumber: 9.0 Consensus size: 27
25759493 CCACGTTAGG
*
25759503 TCGAAATACCCCCATAGGGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
* *
25759530 TCAAAATACCCCTGTAGGGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
* *
25759557 -CTGAAATATCCCC-GTAGGATAAAATGA
1 TC-GAAATA-CCCCTATAGGGTAAAATGA
25759584 TCGAAATACCCCTATAGGGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
* * *
25759611 TCGACATACCCCTGTAGAGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
25759638 -CTGAAATA-CCCTATAGGGTAAAATGA
1 TC-GAAATACCCCTATAGGGTAAAATGA
* * *
25759664 CCGAAATACCTCTATAGAGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
* *
25759691 TCAAAATACCCCTGTAGGGTAAAATGA
1 TCGAAATACCCCTATAGGGTAAAATGA
*
25759718 TCGAAATA-CCCTCATAAGGTAAAATGA
1 TCGAAATACCCCT-ATAGGGTAAAATGA
25759745 CTGTTATACC
Statistics
Matches: 184, Mismatches: 23, Indels: 16
0.83 0.10 0.07
Matches are distributed among these distances:
26 32 0.17
27 147 0.80
28 5 0.03
ACGTcount: A:0.41, C:0.19, G:0.18, T:0.22
Consensus pattern (27 bp):
TCGAAATACCCCTATAGGGTAAAATGA
Found at i:25759740 original size:107 final size:107
Alignment explanation
Indices: 25759503--25759758 Score: 306
Period size: 107 Copynumber: 2.4 Consensus size: 107
25759493 CCACGTTAGG
* * * *
25759503 TCGAAATACCCCCATAGGGTAAAATGA-TCAAAATACCCCTGTAGGGTAAAATGACTGAAATATC
1 TCGAAATA-CCCCATAAGGTAAAATGACT-GAAATACCCCTATAGGGTAAAATGACCGAAATATC
* *
25759567 CCCGTAGGATAAAATGATCGAAATACCCCTATAGGGTAAAATGA
64 CCCATAGGATAAAATGATCAAAATACCCCTATAGGGTAAAATGA
* *
25759611 TCGACATACCCC-TGTAGAGTAAAATGACTGAAATA-CCCTATAGGGTAAAATGACCGAAATA-C
1 TCGAAATACCCCAT-AAG-GTAAAATGACTGAAATACCCCTATAGGGTAAAATGACCGAAATATC
* *
25759673 CTCTATA-GAGTAAAATGATCAAAATACCCCTGTAGGGTAAAATGA
64 C-CCATAGGA-TAAAATGATCAAAATACCCCTATAGGGTAAAATGA
**
25759718 TCGAAATACCCTCATAAGGTAAAATGACTGTTATACCCCTA
1 TCGAAATACCC-CATAAGGTAAAATGACTGAAATACCCCTA
25759759 GGAGACGGAA
Statistics
Matches: 126, Mismatches: 14, Indels: 16
0.81 0.09 0.10
Matches are distributed among these distances:
106 5 0.04
107 90 0.71
108 29 0.23
109 2 0.02
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (107 bp):
TCGAAATACCCCATAAGGTAAAATGACTGAAATACCCCTATAGGGTAAAATGACCGAAATATCCC
CATAGGATAAAATGATCAAAATACCCCTATAGGGTAAAATGA
Found at i:25773760 original size:15 final size:15
Alignment explanation
Indices: 25773742--25773774 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
25773732 CAAATGCCAA
25773742 AATAATAAATACAAC
1 AATAATAAATACAAC
*
25773757 AATAATAAATACATC
1 AATAATAAATACAAC
25773772 AAT
1 AAT
25773775 GGCATAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (15 bp):
AATAATAAATACAAC
Found at i:25774369 original size:6 final size:6
Alignment explanation
Indices: 25774360--25774385 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
25774350 GCGACAGACC
25774360 AAATAA AAATAA AAATAA AAATAA AA
1 AAATAA AAATAA AAATAA AAATAA AA
25774386 TGTGCAGCGA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:25775783 original size:44 final size:44
Alignment explanation
Indices: 25775735--25775850 Score: 121
Period size: 44 Copynumber: 2.6 Consensus size: 44
25775725 CTAATCCACT
* * *
25775735 CCACTACAACTTTAGGGAGATAGGA-TTTGTTCATTCAGTCTGCC
1 CCACTACAACTTTAGGGAGATAAGACTTTCTT-ATTCAGTCTACC
** *
25775779 CCACTGTAA-TTTCAGGG-GAATAAGACTTTCTTATTCAGTCTACT
1 CCACTACAACTTT-AGGGAG-ATAAGACTTTCTTATTCAGTCTACC
*
25775823 CCACTACAACTTCAGGGAGATAAGACTT
1 CCACTACAACTTTAGGGAGATAAGACTT
25775851 ACGCGATCTG
Statistics
Matches: 58, Mismatches: 9, Indels: 10
0.75 0.12 0.13
Matches are distributed among these distances:
43 4 0.07
44 46 0.79
45 8 0.14
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.31
Consensus pattern (44 bp):
CCACTACAACTTTAGGGAGATAAGACTTTCTTATTCAGTCTACC
Found at i:25776635 original size:44 final size:44
Alignment explanation
Indices: 25776406--25776736 Score: 159
Period size: 44 Copynumber: 7.5 Consensus size: 44
25776396 ACTGTCGGTG
* * *
25776406 CAGGAAGGCAAGATCTGCTATTTTTAACCTGTTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTGCAACC
* * * * * * * * ****
25776450 TAGGGAGGCAAG-GCTGGTGTCTTTGATCTGCTTCACTGTCGGTA
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTG-CAACC
* * *
25776494 CAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAACC
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTGCAACC
* * * ** * * * *****
25776538 CAGGGAGGCAAG-GCTGGTGTCTTCGATCTGCTTCACTGTTGGTG
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTG-CAACC
* *
25776582 CAGAAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTGCAACC
* * * * * * ******
25776626 CAGGGAGGCAAGGT-TGGTGTCTTTGATCTGCTTCGCTTTTGGTT
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGC-TGCAACC
* *
25776670 TAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAACC
1 CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTGCAACC
*
25776714 CAGTG-AGGCAAGA-CTGGTGTCTT
1 CAG-GAAGGCAAGATCTGGTATCTT
25776737 CGATCTACTT
Statistics
Matches: 190, Mismatches: 90, Indels: 15
0.64 0.31 0.05
Matches are distributed among these distances:
43 59 0.31
44 77 0.41
45 54 0.28
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (44 bp):
CAGGAAGGCAAGATCTGGTATCTTTAACCTGCTCCGCTGCAACC
Found at i:25776779 original size:88 final size:88
Alignment explanation
Indices: 25776384--25776781 Score: 571
Period size: 88 Copynumber: 4.5 Consensus size: 88
25776374 GTTGGGGTCA
* * * *
25776384 TCGATCTACTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGTTCCGCTGCAAC
1 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
*
25776449 CTAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * * * *
25776472 TTGATCTGCTTCACTGTCGGTACAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCTGTAAC
1 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
25776537 CCAGGGAGGCAAGGCTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* *
25776560 TCGATCTGCTTCACTGTTGGTGCAGAAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
*
25776625 CCAGGGAGGCAAGGTTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * * * **
25776648 TTGATCTGCTTCGCTTTTGGTTTAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
1 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
* *
25776713 CCAGTGAGGCAAGACTGGTGTCT
66 CCAGGGAGGCAAGGCTGGTGTCT
* * * *
25776736 TCGATCTACTTCGCTGCCGGTGCAGGAAGGCAAGATCTATTATCTT
1 TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTT
25776782 CACTGATCTG
Statistics
Matches: 279, Mismatches: 31, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
88 279 1.00
ACGTcount: A:0.20, C:0.24, G:0.26, T:0.30
Consensus pattern (88 bp):
TCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTATCTTTAACCTGCTCCGCTGCAAC
CCAGGGAGGCAAGGCTGGTGTCT
Found at i:25781442 original size:20 final size:20
Alignment explanation
Indices: 25781390--25781443 Score: 58
Period size: 20 Copynumber: 2.6 Consensus size: 20
25781380 CTAACTCCTT
*
25781390 TTATTTTATTATAAGATATTA
1 TTATTTTATT-TTAGATATTA
25781411 TT-TTATGT-TTTTAGATATTA
1 TTATT-T-TATTTTAGATATTA
25781431 TTATTTTATTTTA
1 TTATTTTATTTTA
25781444 TTATACATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
19 1 0.04
20 19 0.68
21 7 0.25
22 1 0.04
ACGTcount: A:0.30, C:0.00, G:0.06, T:0.65
Consensus pattern (20 bp):
TTATTTTATTTTAGATATTA
Found at i:25791418 original size:16 final size:16
Alignment explanation
Indices: 25791397--25791438 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
25791387 TTATTAAATT
*
25791397 ATATATTTTAATTATA
1 ATATATTTTAATAATA
25791413 ATATA-TTTAATAATA
1 ATATATTTTAATAATA
25791428 AT-TATGTTTAA
1 ATATAT-TTTAA
25791439 ATATGATTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 2 0.09
15 11 0.48
16 10 0.43
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (16 bp):
ATATATTTTAATAATA
Found at i:25791423 original size:15 final size:15
Alignment explanation
Indices: 25791388--25791429 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
25791378 TTAAGAATTT
*
25791388 TATTAAATTAT-ATA
1 TATTTAATTATAATA
25791402 T-TTTAATTATAATA
1 TATTTAATTATAATA
*
25791416 TATTTAATAATAAT
1 TATTTAATTATAAT
25791430 TATGTTTAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 8 0.33
14 5 0.21
15 11 0.46
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (15 bp):
TATTTAATTATAATA
Found at i:25791684 original size:16 final size:16
Alignment explanation
Indices: 25791658--25791706 Score: 80
Period size: 16 Copynumber: 3.1 Consensus size: 16
25791648 TTGATTTGCT
*
25791658 ATTACACCTCTATTCC
1 ATTACGCCTCTATTCC
*
25791674 ATTACGTCTCTATTCC
1 ATTACGCCTCTATTCC
25791690 ATTACGCCTCTATTCC
1 ATTACGCCTCTATTCC
25791706 A
1 A
25791707 ATACAGCTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 30 1.00
ACGTcount: A:0.22, C:0.35, G:0.04, T:0.39
Consensus pattern (16 bp):
ATTACGCCTCTATTCC
Found at i:25796558 original size:41 final size:41
Alignment explanation
Indices: 25796495--25796592 Score: 119
Period size: 41 Copynumber: 2.4 Consensus size: 41
25796485 TGTTTTGTAG
* * * *
25796495 GTCTTGAGACTTAGGGGTTATGTTTCGAGACCTA-TC-CTCAT
1 GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGC-C-T
*
25796536 GTCTCGAGACTTAGGGGGTATGTCTAGATACCTAGTCGCCT
1 GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGCCT
25796577 GTCTCGAGACTTAGGG
1 GTCTCGAGACTTAGGG
25796593 TCTTTAAGGT
Statistics
Matches: 50, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
41 46 0.92
42 3 0.06
43 1 0.02
ACGTcount: A:0.19, C:0.20, G:0.29, T:0.32
Consensus pattern (41 bp):
GTCTCGAGACTTAGGGGGTATGTCTAGAGACCTAGTCGCCT
Found at i:25800026 original size:19 final size:20
Alignment explanation
Indices: 25799975--25800026 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
25799965 TTTGGGTCTT
*
25799975 GGTCTCAATTTTTGGTTCTCA
1 GGTC-CAATTTTTGATTCTCA
* *
25799996 GTTCCAACTTTTGATT-TCA
1 GGTCCAATTTTTGATTCTCA
25800015 GGTCCAATTTTT
1 GGTCCAATTTTT
25800027 AAGTTCAATT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
19 13 0.50
20 10 0.38
21 3 0.12
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.48
Consensus pattern (20 bp):
GGTCCAATTTTTGATTCTCA
Found at i:25801976 original size:43 final size:43
Alignment explanation
Indices: 25801923--25802038 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
25801913 TATGTGTTTT
* *
25801923 CATGTAAGACCACGTCTGGGACGTTGGCATCGA-CTTGTGTTTA
1 CATGTAAGACCACGTCTGGGACGTTGGCATCGATC-TGTGATCA
** *
25801966 TGTGTAAGACC-CTGTCTAGGACAG-TGGCATCGATCTGTGATCA
1 CATGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATCTGTGATCA
* *
25802009 CATGTAAGACCACGTATGGGACATTGGCAT
1 CATGTAAGACCACGTCTGGGACGTTGGCAT
25802039 TGTACGAGCT
Statistics
Matches: 58, Mismatches: 10, Indels: 10
0.74 0.13 0.13
Matches are distributed among these distances:
42 1 0.02
43 54 0.93
44 3 0.05
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGTTGGCATCGATCTGTGATCA
Found at i:25809350 original size:8 final size:7
Alignment explanation
Indices: 25809340--25809364 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
25809330 TTAAAAGAAA
25809340 AAAAGCT
1 AAAAGCT
25809347 AAAAGCT
1 AAAAGCT
25809354 AAAAGCT
1 AAAAGCT
25809361 AAAA
1 AAAA
25809365 TTACAAAGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.64, C:0.12, G:0.12, T:0.12
Consensus pattern (7 bp):
AAAAGCT
Found at i:25810497 original size:587 final size:587
Alignment explanation
Indices: 25809379--25810556 Score: 2239
Period size: 587 Copynumber: 2.0 Consensus size: 587
25809369 AAAGAAAACT
*
25809379 TAAAGCATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGTCG
1 TAAAGCATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
25809444 TCATCCTCAACCCAAGGTTAGCTGACGTTCTCGTGTTTAATTTCTATTGTGTATACCAAAACACA
66 TCATCCTCAACCCAAGGTTAGCTGACGTTCTCGTGTTTAATTTCTATTGTGTATACCAAAACACA
*
25809509 CTTGGCTTGTAAGTGCTTCCCGTACAAGACTGATGTTACGACACCATAGTCTTTGTGTCACAACA
131 CTTGGCTTGTAAGTGCTTCCCGTACAAGACCGATGTTACGACACCATAGTCTTTGTGTCACAACA
*
25809574 TTAACGATAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
196 TTAACGACAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
*
25809639 TTTTGCTCCTTATGTTGTGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
261 TTTTGCTCCTTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
* *
25809704 TATGCCTTTGAATGGTCTCTTGCACACTTACTAAGTATGTTAGCGTGCCTTCAGGCCTCATTCGG
326 TATGCCTTTGAATGGTCTCTTGCACACTTACTAAGTATGTTAGCATGCCTTCAGGCCTCATTCGA
25809769 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
391 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
25809834 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
456 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
25809899 ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
521 ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
25809964 AA
586 AA
*
25809966 TAAAGTATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
1 TAAAGCATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
* * * *
25810031 TCATCCTCAACCCAAGGTTAGCTGATGTTCTCGTGTTTAATTTTTATTGTGTATACCAAAATACC
66 TCATCCTCAACCCAAGGTTAGCTGACGTTCTCGTGTTTAATTTCTATTGTGTATACCAAAACACA
*
25810096 CTTGGCTTGTAAGTGCTTCCCGTACAGGACCGATGTTACGACACCATAGTCTTTGTGTCACAACA
131 CTTGGCTTGTAAGTGCTTCCCGTACAAGACCGATGTTACGACACCATAGTCTTTGTGTCACAACA
*
25810161 TTAATGACAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
196 TTAACGACAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
25810226 TTTTGCTCCTTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
261 TTTTGCTCCTTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
25810291 TATGCCTTTGAATGGTCTCTTGCACACTTACTAAGTATGTTAGCATGCCTTCAGGCCTCATTCGA
326 TATGCCTTTGAATGGTCTCTTGCACACTTACTAAGTATGTTAGCATGCCTTCAGGCCTCATTCGA
25810356 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
391 CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
25810421 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
456 GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
25810486 ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
521 ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
25810551 AA
586 AA
25810553 TAAA
1 TAAA
25810557 ATAAAAGCAT
Statistics
Matches: 578, Mismatches: 13, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
587 578 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (587 bp):
TAAAGCATGAAAAACTATCATTCAACAAGTGTTTTAAGAGCCTATTTATAGAGTTAGGGTTGCCG
TCATCCTCAACCCAAGGTTAGCTGACGTTCTCGTGTTTAATTTCTATTGTGTATACCAAAACACA
CTTGGCTTGTAAGTGCTTCCCGTACAAGACCGATGTTACGACACCATAGTCTTTGTGTCACAACA
TTAACGACAGTATACGTGGTTCAGGGGTGTGTAGTGACACCCAAGGCACTGTAGATATTCTAGAA
TTTTGCTCCTTATGTTGCGACATTGAACTCCTCGTGTTTCAACACAACGACCAGCTTTAAGTTCT
TATGCCTTTGAATGGTCTCTTGCACACTTACTAAGTATGTTAGCATGCCTTCAGGCCTCATTCGA
CCCCTAAGGTCAATAAAAGACTCAAACTACACTTTTTACTGAATTTAACTAAACTAATAAAACAT
GACTAAAACATACTAAAATTGCTCGTAATCAACCTCATTAAATATGAAAACTAGTTTAATCTGCT
ACACCAAATTATGACAGATCAAACTCCCCCACACTTAAGTCATTGCTTGTCTTCAAGCAAAGCAA
AA
Found at i:25813524 original size:21 final size:20
Alignment explanation
Indices: 25813496--25813534 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
25813486 GAAATTAGGG
*
25813496 TTTGAAGAATTTTGAGATAA
1 TTTGAAGAATTTAGAGATAA
*
25813516 TTTGAAAGAGTTTAGAGAT
1 TTTG-AAGAATTTAGAGAT
25813535 TGAAAAGAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.38, C:0.00, G:0.23, T:0.38
Consensus pattern (20 bp):
TTTGAAGAATTTAGAGATAA
Found at i:25820372 original size:21 final size:21
Alignment explanation
Indices: 25820329--25820372 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
25820319 CCAGATAAGG
* *
25820329 GAATTATAATCAACAATAGCA
1 GAATTACAATCAACAACAGCA
25820350 GAATTACAATCAACACACA-CA
1 GAATTACAATCAACA-ACAGCA
25820371 GA
1 GA
25820373 TGCATCTACA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 18 0.90
22 2 0.10
ACGTcount: A:0.52, C:0.20, G:0.09, T:0.18
Consensus pattern (21 bp):
GAATTACAATCAACAACAGCA
Found at i:25827403 original size:17 final size:17
Alignment explanation
Indices: 25827381--25827414 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
25827371 GATAAGTATA
*
25827381 TATTGTCATTGCATTTT
1 TATTGTCATTACATTTT
25827398 TATTGTCATTACATTTT
1 TATTGTCATTACATTTT
25827415 CATATTAGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (17 bp):
TATTGTCATTACATTTT
Found at i:25833999 original size:180 final size:180
Alignment explanation
Indices: 25833697--25834058 Score: 715
Period size: 180 Copynumber: 2.0 Consensus size: 180
25833687 ATGATGACAC
25833697 CACCAAACACTACAGTGCGGGCGACATTCTGGTGGTTGATAGATGGTCCTTTAGCAGTTGAGCAG
1 CACCAAACACTACAGTGCGGGCGACATTCTGGTGGTTGATAGATGGTCCTTTAGCAGTTGAGCAG
25833762 TAGAGGAATCACAATCCTACTAGGACTCTACTGGATAATTTGATTTCAAAATAACTATTCCCAAA
66 TAGAGGAATCACAATCCTACTAGGACTCTACTGGATAATTTGATTTCAAAATAACTATTCCCAAA
25833827 ATAATATTATTTAATAAGATTTAATATTAAATTTAATTTGAATAGTATTT
131 ATAATATTATTTAATAAGATTTAATATTAAATTTAATTTGAATAGTATTT
25833877 CACCAAACACTACAGTGCGGGCGACATTCTGGTGGTTGATAGATGGTCCTTTAGCAGTTGAGCAG
1 CACCAAACACTACAGTGCGGGCGACATTCTGGTGGTTGATAGATGGTCCTTTAGCAGTTGAGCAG
25833942 TAGAGGAATCACAATCCTACTAGGACTCTACTGGATAATTTGATTTCAAAATAACTATTCCCAAA
66 TAGAGGAATCACAATCCTACTAGGACTCTACTGGATAATTTGATTTCAAAATAACTATTCCCAAA
*
25834007 ATAATATTATTTAATAAGATTTAATATTAAATTTAATTTGAATATTATTT
131 ATAATATTATTTAATAAGATTTAATATTAAATTTAATTTGAATAGTATTT
25834057 CA
1 CA
25834059 TTAATTTAAT
Statistics
Matches: 181, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
180 181 1.00
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.33
Consensus pattern (180 bp):
CACCAAACACTACAGTGCGGGCGACATTCTGGTGGTTGATAGATGGTCCTTTAGCAGTTGAGCAG
TAGAGGAATCACAATCCTACTAGGACTCTACTGGATAATTTGATTTCAAAATAACTATTCCCAAA
ATAATATTATTTAATAAGATTTAATATTAAATTTAATTTGAATAGTATTT
Found at i:25834081 original size:20 final size:18
Alignment explanation
Indices: 25834025--25834107 Score: 66
Period size: 20 Copynumber: 4.6 Consensus size: 18
25834015 ATTTAATAAG
25834025 ATTTAATATTAAAT-TTA
1 ATTTAATATTAAATATTA
**
25834042 ATTTGAATATTATTTCATTA
1 ATTT-AATATTAAAT-ATTA
25834062 ATTTAATATTAAAATGATT-
1 ATTTAATATT-AAAT-ATTA
25834081 ATCTTAATATT-AA-ATTA
1 AT-TTAATATTAAATATTA
*
25834098 AATTAATATT
1 ATTTAATATT
25834108 TATCTTATAG
Statistics
Matches: 54, Mismatches: 6, Indels: 13
0.74 0.08 0.18
Matches are distributed among these distances:
16 11 0.20
17 5 0.09
18 10 0.19
19 8 0.15
20 20 0.37
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (18 bp):
ATTTAATATTAAATATTA
Found at i:25834159 original size:12 final size:12
Alignment explanation
Indices: 25834142--25834203 Score: 51
Period size: 12 Copynumber: 5.1 Consensus size: 12
25834132 AATTTAATAG
25834142 ATTTAATATTAA
1 ATTTAATATTAA
25834154 ATTTAATA-TAA
1 ATTTAATATTAA
25834165 TATTT-ATATTGATA
1 -ATTTAATATT-A-A
25834179 AGTATT-ATATT-A
1 A-T-TTAATATTAA
25834191 ATTTAATATTAA
1 ATTTAATATTAA
25834203 A
1 A
25834204 GTGATTAAGT
Statistics
Matches: 42, Mismatches: 0, Indels: 16
0.72 0.00 0.28
Matches are distributed among these distances:
10 2 0.05
11 12 0.29
12 17 0.40
13 2 0.05
14 2 0.05
15 7 0.17
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (12 bp):
ATTTAATATTAA
Found at i:25835950 original size:5 final size:5
Alignment explanation
Indices: 25835936--25836048 Score: 118
Period size: 5 Copynumber: 22.6 Consensus size: 5
25835926 CTTTAATATT
*
25835936 TCATA CCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
* * * * ** * * ***
25835986 TCATA TGATA ACGTA ACGGA TCATG TCATA TCATA TCATA CCATA TTGGA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
25836036 TCATA TCATA TCA
1 TCATA TCATA TCA
25836049 CATAATGTCC
Statistics
Matches: 88, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
5 88 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.35
Consensus pattern (5 bp):
TCATA
Found at i:25837068 original size:17 final size:16
Alignment explanation
Indices: 25837027--25837084 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 16
25837017 AGCAAAAATC
*
25837027 AAAGAAGAAG-G-AGA
1 AAAGAAGAAGAGAAAA
*
25837041 AAAGAA-AAGA-AAAT
1 AAAGAAGAAGAGAAAA
25837055 AAAGAAGAAGAGAAAA
1 AAAGAAGAAGAGAAAA
*
25837071 AAATAGAGAAGAGA
1 AAAGA-AGAAGAGA
25837085 GGGAGAGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 3 0.09
14 13 0.37
15 4 0.11
16 7 0.20
17 8 0.23
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (16 bp):
AAAGAAGAAGAGAAAA
Found at i:25837073 original size:20 final size:20
Alignment explanation
Indices: 25837038--25837082 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
25837028 AAGAAGAAGG
25837038 AGAA-AAGAAAAGAAAATAA
1 AGAAGAAGAAAAGAAAATAA
*
25837057 AGAAGAAGAGAAA-AAAATAG
1 AGAAGAAGA-AAAGAAAATAA
25837077 AGAAGA
1 AGAAGA
25837083 GAGGGAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 3 0.13
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (20 bp):
AGAAGAAGAAAAGAAAATAA
Found at i:25839691 original size:25 final size:25
Alignment explanation
Indices: 25839645--25839706 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
25839635 ATGGAACAAC
* *
25839645 AGAAAGAAAAAATCAAAGAAGAAGGAG
1 AGAAAGAAAACA--AAAGAAGAAGAAG
*
25839672 A-AAAGAAAACAAAAGAAAGAATAAG
1 AGAAAGAAAACAAAAG-AAGAAGAAG
25839697 AGAAAGAAAA
1 AGAAAGAAAA
25839707 TAGAGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 17 0.57
27 1 0.03
ACGTcount: A:0.73, C:0.03, G:0.21, T:0.03
Consensus pattern (25 bp):
AGAAAGAAAACAAAAGAAGAAGAAG
Found at i:25842309 original size:14 final size:14
Alignment explanation
Indices: 25842290--25842328 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
25842280 TCACACACAT
25842290 ATATAAATATTATA
1 ATATAAATATTATA
25842304 ATAT-AA-A--ATA
1 ATATAAATATTATA
25842314 ATATAAATATTATA
1 ATATAAATATTATA
25842328 A
1 A
25842329 ACAATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 7 0.33
11 2 0.10
12 2 0.10
13 2 0.10
14 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAAATATTATA
Found at i:25842322 original size:16 final size:16
Alignment explanation
Indices: 25842288--25842329 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25842278 TCTCACACAC
*
25842288 ATATATAAATATTATA
1 ATATATAAATAATATA
25842304 ATATA-AAATAATATAA
1 ATATATAAATAATAT-A
25842320 ATATTATAAA
1 ATA-TATAAA
25842330 CAATTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 9 0.41
17 2 0.09
18 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATATAAATAATATA
Found at i:25844092 original size:122 final size:123
Alignment explanation
Indices: 25843875--25844123 Score: 482
Period size: 122 Copynumber: 2.0 Consensus size: 123
25843865 AATTTAATAT
*
25843875 TAAAGTGATTAAGTTTAATCATAGTTGAACCTTTTAAACTCTCCTTATATAAAGAGAGTCATTAG
1 TAAAGTGATTAAGTTTAATCATAGTTGAACCCTTTAAACTCTCCTTATATAAAGAGAGTCATTAG
25843940 TCATTATTTTACAGATACTTGAATTTAAGAGAAAGTTATAGAGAGAAAA-TCTCTCAA
66 TCATTATTTTACAGATACTTGAATTTAAGAGAAAGTTATAGAGAGAAAATTCTCTCAA
25843997 TAAAGTGATTAAGTTTAATCATAGTTGAACCCTTTAAACTCTCCTTATATAAAGAGAGTCATTAG
1 TAAAGTGATTAAGTTTAATCATAGTTGAACCCTTTAAACTCTCCTTATATAAAGAGAGTCATTAG
25844062 TCATTATTTTACAGATACTTGAATTTAAGAGAAAGTTATAGAGAGAAAATTCTCTCAA
66 TCATTATTTTACAGATACTTGAATTTAAGAGAAAGTTATAGAGAGAAAATTCTCTCAA
25844120 TAAA
1 TAAA
25844124 TTATTTCAGA
Statistics
Matches: 125, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
122 113 0.90
123 12 0.10
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.35
Consensus pattern (123 bp):
TAAAGTGATTAAGTTTAATCATAGTTGAACCCTTTAAACTCTCCTTATATAAAGAGAGTCATTAG
TCATTATTTTACAGATACTTGAATTTAAGAGAAAGTTATAGAGAGAAAATTCTCTCAA
Found at i:25845747 original size:5 final size:5
Alignment explanation
Indices: 25845733--25845845 Score: 118
Period size: 5 Copynumber: 22.6 Consensus size: 5
25845723 CTTTAATATT
*
25845733 TCATA CCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
* * * * ** * * ***
25845783 TCATA TGATA ACGTA ACGGA TCATG TCATA TCATA TCATA CCATA TTGGA
1 TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA TCATA
25845833 TCATA TCATA TCA
1 TCATA TCATA TCA
25845846 CATAATGTCC
Statistics
Matches: 88, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
5 88 1.00
ACGTcount: A:0.38, C:0.20, G:0.06, T:0.35
Consensus pattern (5 bp):
TCATA
Found at i:25846865 original size:17 final size:16
Alignment explanation
Indices: 25846824--25846881 Score: 52
Period size: 14 Copynumber: 3.8 Consensus size: 16
25846814 AGCAAAAATC
*
25846824 AAAGAAGAAG-G-AGA
1 AAAGAAGAAGAGAAAA
*
25846838 AAAGAA-AAGA-AAAT
1 AAAGAAGAAGAGAAAA
25846852 AAAGAAGAAGAGAAAA
1 AAAGAAGAAGAGAAAA
*
25846868 AAATAGAGAAGAGA
1 AAAGA-AGAAGAGA
25846882 GGGAGAGTGA
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
13 3 0.09
14 13 0.37
15 4 0.11
16 7 0.20
17 8 0.23
ACGTcount: A:0.71, C:0.00, G:0.26, T:0.03
Consensus pattern (16 bp):
AAAGAAGAAGAGAAAA
Found at i:25846870 original size:20 final size:20
Alignment explanation
Indices: 25846835--25846879 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
25846825 AAGAAGAAGG
25846835 AGAA-AAGAAAAGAAAATAA
1 AGAAGAAGAAAAGAAAATAA
*
25846854 AGAAGAAGAGAAA-AAAATAG
1 AGAAGAAGA-AAAGAAAATAA
25846874 AGAAGA
1 AGAAGA
25846880 GAGGGAGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
19 4 0.17
20 16 0.70
21 3 0.13
ACGTcount: A:0.73, C:0.00, G:0.22, T:0.04
Consensus pattern (20 bp):
AGAAGAAGAAAAGAAAATAA
Found at i:25849488 original size:25 final size:25
Alignment explanation
Indices: 25849442--25849503 Score: 63
Period size: 26 Copynumber: 2.4 Consensus size: 25
25849432 ATGGAACAAC
* *
25849442 AGAAAGAAAAAATCAAAGAAGAAGGAG
1 AGAAAGAAAACA--AAAGAAGAAGAAG
*
25849469 A-AAAGAAAACAAAAGAAAGAATAAG
1 AGAAAGAAAACAAAAG-AAGAAGAAG
25849494 AGAAAGAAAA
1 AGAAAGAAAA
25849504 TAGAGAAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 4 0.13
25 8 0.27
26 17 0.57
27 1 0.03
ACGTcount: A:0.73, C:0.03, G:0.21, T:0.03
Consensus pattern (25 bp):
AGAAAGAAAACAAAAGAAGAAGAAG
Found at i:25852106 original size:14 final size:14
Alignment explanation
Indices: 25852087--25852125 Score: 50
Period size: 14 Copynumber: 3.1 Consensus size: 14
25852077 TCACACACAT
25852087 ATATAAATATTATA
1 ATATAAATATTATA
25852101 ATAT-AA-A--ATA
1 ATATAAATATTATA
25852111 ATATAAATATTATA
1 ATATAAATATTATA
25852125 A
1 A
25852126 ACAATTATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 8
0.72 0.00 0.28
Matches are distributed among these distances:
10 7 0.33
11 2 0.10
12 2 0.10
13 2 0.10
14 8 0.38
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (14 bp):
ATATAAATATTATA
Found at i:25852119 original size:16 final size:16
Alignment explanation
Indices: 25852085--25852126 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
25852075 TCTCACACAC
*
25852085 ATATATAAATATTATA
1 ATATATAAATAATATA
25852101 ATATA-AAATAATATAA
1 ATATATAAATAATAT-A
25852117 ATATTATAAA
1 ATA-TATAAA
25852127 CAATTATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
15 8 0.36
16 9 0.41
17 2 0.09
18 3 0.14
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
ATATATAAATAATATA
Found at i:25859425 original size:42 final size:41
Alignment explanation
Indices: 25859341--25859517 Score: 203
Period size: 42 Copynumber: 4.2 Consensus size: 41
25859331 TCTGGCACTT
* * *
25859341 AGCCTGCTAGACATATAGTTTGA-AATGTTTCAACGACATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTC-ACGACATTA
* * *
25859382 AGCCTGCTAGACGTAAAGTTTGATATTGTTTCATCGGCATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCA-CGACATTA
* * *
25859424 AGCCTACTAGACATAAAGTCTGAAATTATTTCACCGACATTA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCA-CGACATTA
* * *
25859466 AGCCTGCTAGACGTAAAGTCTGATATTGTTTCACTGGCAATA
1 AGCCTGCTAGACATAAAGTCTGATATTGTTTCAC-GACATTA
25859508 AGCCTGCTAG
1 AGCCTGCTAG
25859518 GCGCTAAGCT
Statistics
Matches: 116, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
41 23 0.20
42 93 0.80
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (41 bp):
AGCCTGCTAGACATAAAGTCTGATATTGTTTCACGACATTA
Found at i:25859448 original size:83 final size:84
Alignment explanation
Indices: 25859332--25859517 Score: 268
Period size: 84 Copynumber: 2.2 Consensus size: 84
25859322 ATTCAGTACT
* * * * *
25859332 CTGGCACTTAGCCTGCTAGACATATAGTTTGAAA-TGTTTCAACGACATTAAGCCTGCTAGACGT
1 CTGGCAATAAGCCTGCTAGACATAAAGTCTGAAATTATTTCAACGACATTAAGCCTGCTAGACGT
*
25859396 AAAGTTTGATATTGTTTCA
66 AAAGTCTGATATTGTTTCA
* * *
25859415 -TCGGCATTAAGCCTACTAGACATAAAGTCTGAAATTATTTCACCGACATTAAGCCTGCTAGACG
1 CT-GGCAATAAGCCTGCTAGACATAAAGTCTGAAATTATTTCAACGACATTAAGCCTGCTAGACG
25859479 TAAAGTCTGATATTGTTTCA
65 TAAAGTCTGATATTGTTTCA
25859499 CTGGCAATAAGCCTGCTAG
1 CTGGCAATAAGCCTGCTAG
25859518 GCGCTAAGCT
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
82 1 0.01
83 27 0.30
84 61 0.68
85 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.19, T:0.31
Consensus pattern (84 bp):
CTGGCAATAAGCCTGCTAGACATAAAGTCTGAAATTATTTCAACGACATTAAGCCTGCTAGACGT
AAAGTCTGATATTGTTTCA
Found at i:25861188 original size:5 final size:5
Alignment explanation
Indices: 25861178--25861208 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
25861168 TTTAATTAAC
25861178 ATATA ATATA ATATA ATATA ATATA ATATA A
1 ATATA ATATA ATATA ATATA ATATA ATATA A
25861209 GGCTATTTAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (5 bp):
ATATA
Found at i:25870453 original size:6 final size:6
Alignment explanation
Indices: 25870444--25870474 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
25870434 AATTACACTC
25870444 TTTATT TTTA-T TTTATT TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TT
25870475 GTAGGTAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.21
6 19 0.79
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:25870460 original size:11 final size:12
Alignment explanation
Indices: 25870444--25870474 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
25870434 AATTACACTC
25870444 TTTATTTTTA-T
1 TTTATTTTTATT
25870455 TTTATTTTTATT
1 TTTATTTTTATT
25870467 TTTATTTT
1 TTTATTTT
25870475 GTAGGTAGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:25870744 original size:22 final size:22
Alignment explanation
Indices: 25870719--25870766 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
25870709 AGAAAAAAAA
25870719 CCTAACCTTTCACCCATCAAAT
1 CCTAACCTTTCACCCATCAAAT
* * *
25870741 CCTAATCTTTCACCTATCACAT
1 CCTAACCTTTCACCCATCAAAT
25870763 CCTA
1 CCTA
25870767 GCCATCTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.29, C:0.40, G:0.00, T:0.31
Consensus pattern (22 bp):
CCTAACCTTTCACCCATCAAAT
Found at i:25879151 original size:42 final size:42
Alignment explanation
Indices: 25879072--25879245 Score: 206
Period size: 42 Copynumber: 4.2 Consensus size: 42
25879062 GACACTTAGT
* * * * *
25879072 CTGCTAGACATATAGTCTGA-AATGTTTCAGCGGCATTAAGT
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
*
25879113 TTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
* * * * *
25879155 CTGCTACACGTAAAGTCTAAAATTATTTCACTGGCATTAAGC
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
* * * *
25879197 CTGCTAAACGTAAAGTCTGATATTGTTTCACTGGCAATAAGT
1 CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
25879239 CTGCTAG
1 CTGCTAG
25879246 GCGCTAAGCC
Statistics
Matches: 113, Mismatches: 19, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
41 17 0.15
42 96 0.85
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32
Consensus pattern (42 bp):
CTGCTAGACGTAAAGTCTGATATTGTTTCACCGGCATTAAGC
Found at i:25882216 original size:43 final size:43
Alignment explanation
Indices: 25882032--25882204 Score: 217
Period size: 43 Copynumber: 4.1 Consensus size: 43
25882022 ATGTTCCAAT
** * * * *
25882032 ATCGATTTGAGATCCCGTATAAGATCATATCTGGGATA-TGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
* * *
25882074 AAT-GATTTGGGA-TTCATGTAAGACCATAGCTAGGCTATTGGC
1 -ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
*
25882116 ATCGATTTGAGATTTCGTGTAAGACCATAGTTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
*
25882159 ATCGATTTGAGATTTTGTGTAAGACCATAGCTGGGCTATTGGC
1 ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
25882202 ATC
1 ATC
25882205 AATACGAGAT
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
41 19 0.17
42 20 0.18
43 73 0.65
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.33
Consensus pattern (43 bp):
ATCGATTTGAGATTTCGTGTAAGACCATAGCTGGGCTATTGGC
Found at i:25889076 original size:85 final size:85
Alignment explanation
Indices: 25888973--25889146 Score: 348
Period size: 85 Copynumber: 2.0 Consensus size: 85
25888963 CATCTATAAT
25888973 TTTATATCATCACATCATATACATAAGTATCATATAAAAATACTTCAAAAAAGGAAAAGTCTAGA
1 TTTATATCATCACATCATATACATAAGTATCATATAAAAATACTTCAAAAAAGGAAAAGTCTAGA
25889038 TAGTGGGAATAATTTTCTGG
66 TAGTGGGAATAATTTTCTGG
25889058 TTTATATCATCACATCATATACATAAGTATCATATAAAAATACTTCAAAAAAGGAAAAGTCTAGA
1 TTTATATCATCACATCATATACATAAGTATCATATAAAAATACTTCAAAAAAGGAAAAGTCTAGA
25889123 TAGTGGGAATAATTTTCTGG
66 TAGTGGGAATAATTTTCTGG
25889143 TTTA
1 TTTA
25889147 GGCTATAGAG
Statistics
Matches: 89, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 89 1.00
ACGTcount: A:0.43, C:0.11, G:0.13, T:0.33
Consensus pattern (85 bp):
TTTATATCATCACATCATATACATAAGTATCATATAAAAATACTTCAAAAAAGGAAAAGTCTAGA
TAGTGGGAATAATTTTCTGG
Found at i:25891825 original size:14 final size:14
Alignment explanation
Indices: 25891806--25891833 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25891796 ACATCATACT
25891806 ATAAAATCAATAAC
1 ATAAAATCAATAAC
25891820 ATAAAATCAATAAC
1 ATAAAATCAATAAC
25891834 TTGAGATAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.64, C:0.14, G:0.00, T:0.21
Consensus pattern (14 bp):
ATAAAATCAATAAC
Found at i:25908820 original size:51 final size:52
Alignment explanation
Indices: 25908735--25908836 Score: 170
Period size: 51 Copynumber: 2.0 Consensus size: 52
25908725 ACATAGGATC
*
25908735 GTGAATGAGTTGGAAAAAGCAGCAGGCAGAAACAAAAATTCACTCACACAGA
1 GTGAACGAGTTGGAAAAAGCAGCAGGCAGAAACAAAAATTCACTCACACAGA
* *
25908787 GTGAACGAGTTGG-AAAAGCAGCCGGCAGCAACAAAAATTCACTCACACAG
1 GTGAACGAGTTGGAAAAAGCAGCAGGCAGAAACAAAAATTCACTCACACAG
25908837 TCGGGTCGAG
Statistics
Matches: 47, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
51 35 0.74
52 12 0.26
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.13
Consensus pattern (52 bp):
GTGAACGAGTTGGAAAAAGCAGCAGGCAGAAACAAAAATTCACTCACACAGA
Found at i:25909980 original size:85 final size:82
Alignment explanation
Indices: 25909891--25910136 Score: 295
Period size: 85 Copynumber: 3.0 Consensus size: 82
25909881 TTTGTGAAAT
* *
25909891 AAGCGCCGCTAAAGAACAGTA-CTATTAGCGGCGTTTTTGAACAAGCGCCGCTATAGAACATTA-
1 AAGCGCCGCTAAAGAACAGTATCT-TTAGCGGCGTTTTT-AACAAGCGCCGCTAAAGAACATGAT
*
25909954 CTTTTTGCGGCGTTTTCCTCCA
64 C-TTTAGCGGCGTTTT--TCCA
** * *
25909976 AAGCGCCGCTAAAGAACACG-ATCTTTAGCGGCGTTTTTTTCAAAGCGCCGCTAAAGTACACGAT
1 AAGCGCCGCTAAAGAACA-GTATCTTTAGCGGCGTTTTTAAC-AAGCGCCGCTAAAGAACATGAT
*
25910040 CTTTAGCGGCGTTTTTTCA
64 CTTTAGCGGCGTTTTTCCA
* *
25910059 AAGCGCCGCTAAAGAACA-TGATCTTTAGCGGCGTTTTTCATAAGCGCCG-TAAAGAACATGATC
1 AAGCGCCGCTAAAGAACAGT-ATCTTTAGCGGCGTTTTTAACAAGCGCCGCTAAAGAACATGATC
25910122 TTTAGCGGCGTTTTT
65 TTTAGCGGCGTTTTT
25910137 TTCTGTAAGC
Statistics
Matches: 142, Mismatches: 13, Indels: 16
0.83 0.08 0.09
Matches are distributed among these distances:
81 27 0.19
82 8 0.06
83 39 0.27
84 1 0.01
85 63 0.44
86 4 0.03
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (82 bp):
AAGCGCCGCTAAAGAACAGTATCTTTAGCGGCGTTTTTAACAAGCGCCGCTAAAGAACATGATCT
TTAGCGGCGTTTTTCCA
Found at i:25910067 original size:41 final size:41
Alignment explanation
Indices: 25909891--25910137 Score: 306
Period size: 42 Copynumber: 6.0 Consensus size: 41
25909881 TTTGTGAAAT
**
25909891 AAGCGCCGCTAAAGAACA-G-TACTATTAGCGGCGTTTTTGAA
1 AAGCGCCGCTAAAGAACATGAT-CT-TTAGCGGCGTTTTTTCA
* * * *
25909932 CAAGCGCCGCTATAGAACATTA-CTTTTTGCGGCGTTTTCCTCCA
1 -AAGCGCCGCTAAAGAACATGATC-TTTAGCGGCGTTTT--TTCA
*
25909976 AAGCGCCGCTAAAGAACACGATCTTTAGCGGCGTTTTTTTCA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTTCA
* *
25910018 AAGCGCCGCTAAAGTACACGATCTTTAGCGGCGTTTTTTCA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCA
25910059 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCG-TTTTTCA
1 AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCA
25910099 TAAGCGCCG-TAAAGAACATGATCTTTAGCGGCGTTTTTT
1 -AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTT
25910138 TCTGTAAGCG
Statistics
Matches: 183, Mismatches: 13, Indels: 19
0.85 0.06 0.09
Matches are distributed among these distances:
40 31 0.17
41 52 0.28
42 65 0.36
43 28 0.15
44 7 0.04
ACGTcount: A:0.26, C:0.23, G:0.22, T:0.29
Consensus pattern (41 bp):
AAGCGCCGCTAAAGAACATGATCTTTAGCGGCGTTTTTTCA
Found at i:25912930 original size:7 final size:7
Alignment explanation
Indices: 25912920--25912945 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
25912910 ATTATTTTTA
25912920 ATTTAAT
1 ATTTAAT
25912927 ATTTAAT
1 ATTTAAT
25912934 ATTTAAT
1 ATTTAAT
25912941 ATTTA
1 ATTTA
25912946 TTAAAATTTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (7 bp):
ATTTAAT
Found at i:25912949 original size:24 final size:25
Alignment explanation
Indices: 25912922--25912969 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 25
25912912 TATTTTTAAT
* *
25912922 TTAATATTTAATATTTAA-TATTTA
1 TTAAAATTTAATATATAAGTATTTA
*
25912946 TTAAAATTTCATATATAAGTATTT
1 TTAAAATTTAATATATAAGTATTT
25912970 TAACATTTTC
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.54
Consensus pattern (25 bp):
TTAAAATTTAATATATAAGTATTTA
Found at i:25913728 original size:93 final size:92
Alignment explanation
Indices: 25913541--25913728 Score: 270
Period size: 93 Copynumber: 2.0 Consensus size: 92
25913531 TAGATAAAAA
* * *
25913541 AACAATTTTAAGAGTACTTGCTTCACTCAATATAAATTTATAGAAAATTTTAAAAAATAATAAGA
1 AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAGAAAATTTTAAAAAATAATAACA
25913606 TAATATTATATTACCTTATCATTAATT
66 TAATATTATATTACCTTATCATTAATT
* * * * *
25913633 AACAATTTTAAGAATGCTTGTTTCACTCAGTATAAACTTATAGAAAAATTTTAAAAATTAATATC
1 AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAG-AAAATTTTAAAAAATAATAAC
*
25913698 ATAATATTATATTA-CTTCATTATTAATT
65 ATAATATTATATTACCTT-ATCATTAATT
25913726 AAC
1 AAC
25913729 GTCTCCTTGA
Statistics
Matches: 85, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
92 41 0.48
93 44 0.52
ACGTcount: A:0.45, C:0.10, G:0.05, T:0.40
Consensus pattern (92 bp):
AACAATTTTAAGAATACTTGCTTCACTCAATATAAACTTATAGAAAATTTTAAAAAATAATAACA
TAATATTATATTACCTTATCATTAATT
Found at i:25915194 original size:12 final size:13
Alignment explanation
Indices: 25915165--25915197 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
25915155 GAGGTTACAC
25915165 GGCCGTGTGGCCA
1 GGCCGTGTGGCCA
*
25915178 GGCCGTGT-GCTA
1 GGCCGTGTGGCCA
25915190 GGCCGTGT
1 GGCCGTGT
25915198 AATAGTTTGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 11 0.58
13 8 0.42
ACGTcount: A:0.06, C:0.27, G:0.45, T:0.21
Consensus pattern (13 bp):
GGCCGTGTGGCCA
Found at i:25916243 original size:20 final size:19
Alignment explanation
Indices: 25916216--25916257 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
25916206 CCTTTCAAAT
25916216 TTTCTTATTTT-CATTTGCA
1 TTTCTTATTTTCCATTT-CA
25916235 TTTCATTATTTTCCATTTCA
1 TTTC-TTATTTTCCATTTCA
25916255 TTT
1 TTT
25916258 ACTATCTTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.19
20 12 0.57
21 5 0.24
ACGTcount: A:0.17, C:0.17, G:0.02, T:0.64
Consensus pattern (19 bp):
TTTCTTATTTTCCATTTCA
Found at i:25917426 original size:62 final size:62
Alignment explanation
Indices: 25917326--25917446 Score: 170
Period size: 62 Copynumber: 2.0 Consensus size: 62
25917316 GTTAGGGTTC
* * *
25917326 GATTTCACAAAATTCCTAAATCTCGAATATTGCATTTATTTTCATTCGTTAGAAAAATCCTT
1 GATTTCACAAAACTCCTAAATATCAAATATTGCATTTATTTTCATTCGTTAGAAAAATCCTT
* * ** *
25917388 GATTTTACAAAACTCCTAAATATCAAATATTGCCTTTATTTTTTTTTGTTAGAAAAATC
1 GATTTCACAAAACTCCTAAATATCAAATATTGCATTTATTTTCATTCGTTAGAAAAATC
25917447 ATCGTCTTGA
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
62 51 1.00
ACGTcount: A:0.35, C:0.16, G:0.07, T:0.42
Consensus pattern (62 bp):
GATTTCACAAAACTCCTAAATATCAAATATTGCATTTATTTTCATTCGTTAGAAAAATCCTT
Found at i:25919249 original size:150 final size:151
Alignment explanation
Indices: 25918968--25919268 Score: 595
Period size: 150 Copynumber: 2.0 Consensus size: 151
25918958 ATGAAGGCTA
25918968 AACAAAATACCCTAAATCGGTAGCCTCCTAAACATTCTCAGCAGCCTTAATAACAAAAATAAAAA
1 AACAAAATACCCTAAATCGGTAGCCTCCTAAACATTCTCAGCAGCCTTAATAACAAAAATAAAAA
25919033 ACAAAGGAACCCTAGGCCCTTCTCTCCATCGCAACGCCGATTCGCCCTCTCTCCAACTTCGATTT
66 ACAAAGGAACCCTAGGCCCTTCTCTCCATCGCAACGCCGATTCGCCCTCTCTCCAACTTCGATTT
25919098 CAACGAAGCGAGCGAGGTCCG
131 CAACGAAGCGAGCGAGGTCCG
25919119 AACAAAATA-CCTAAATCGGTAGCCTCCTAAACATTCTCAGCAGCCTTAATAACAAAAATAAAAA
1 AACAAAATACCCTAAATCGGTAGCCTCCTAAACATTCTCAGCAGCCTTAATAACAAAAATAAAAA
25919183 ACAAAGGAACCCTAGGCCCTTCTCTCCATCGCAACGCCGATTCGCCCTCTCTCCAACTTCGATTT
66 ACAAAGGAACCCTAGGCCCTTCTCTCCATCGCAACGCCGATTCGCCCTCTCTCCAACTTCGATTT
25919248 CAACGAAGCGAGCGAGGTCCG
131 CAACGAAGCGAGCGAGGTCCG
25919269 GCGGCCTCAA
Statistics
Matches: 150, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
150 141 0.94
151 9 0.06
ACGTcount: A:0.34, C:0.32, G:0.15, T:0.20
Consensus pattern (151 bp):
AACAAAATACCCTAAATCGGTAGCCTCCTAAACATTCTCAGCAGCCTTAATAACAAAAATAAAAA
ACAAAGGAACCCTAGGCCCTTCTCTCCATCGCAACGCCGATTCGCCCTCTCTCCAACTTCGATTT
CAACGAAGCGAGCGAGGTCCG
Found at i:25921133 original size:15 final size:15
Alignment explanation
Indices: 25921091--25921135 Score: 65
Period size: 15 Copynumber: 3.0 Consensus size: 15
25921081 TTAATCGACA
*
25921091 AAACTTTTC-TCTAAT
1 AAACTTTTCAT-TTAT
25921106 AAACTTTTCATTTAT
1 AAACTTTTCATTTAT
25921121 AAACTTTTCATTTAT
1 AAACTTTTCATTTAT
25921136 CATATCATTT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
15 27 0.96
16 1 0.04
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (15 bp):
AAACTTTTCATTTAT
Found at i:25925879 original size:195 final size:195
Alignment explanation
Indices: 25925660--25926058 Score: 771
Period size: 195 Copynumber: 2.0 Consensus size: 195
25925650 ATGTTTGCTA
*
25925660 ACTTTGTTGGCATTACATACATGTGGATTGGTACGATAGTATTTTAACAATTAATTAATTTGTTA
1 ACTTT-TTTGCATTACATACATGTGGATTGGTACGATAGTATTTTAACAATTAATTAATTTGTTA
25925725 AAATTTAATAATTATAAAAAAATATAAAAAAGTTTAAAAAATTAGAATTATTAAAAATATAAAAA
65 AAATTTAATAATTATAAAAAAATATAAAAAAGTTTAAAAAATTAGAATTATTAAAAATATAAAAA
25925790 AAATATTTTTAATTTTAAAAATAATTAATTATTACCTTGTCATACACTTGACTTGTAGCAAACGT
130 AAATATTTTTAATTTTAAAAATAATTAATTATTACCTTGTCATACACTTGACTTGTAGCAAACGT
25925855 T
195 T
25925856 ACTTTTTTGCATTACATACATGTGGATTGGTACGATAGTATTTTAACAATTAATTAATTTGTTAA
1 ACTTTTTTGCATTACATACATGTGGATTGGTACGATAGTATTTTAACAATTAATTAATTTGTTAA
25925921 AATTTAATAATTATAAAAAAATATAAAAAAGTTTAAAAAATTAGAATTATTAAAAATATAAAAAA
66 AATTTAATAATTATAAAAAAATATAAAAAAGTTTAAAAAATTAGAATTATTAAAAATATAAAAAA
25925986 AATATTTTTAATTTTAAAAATAATTAATTATTACCTTGTCATACACTTGACTTGTAGCAAACGTT
131 AATATTTTTAATTTTAAAAATAATTAATTATTACCTTGTCATACACTTGACTTGTAGCAAACGTT
*
25926051 AATTTTTT
1 ACTTTTTT
25926059 TTTTAACTAT
Statistics
Matches: 201, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
195 196 0.98
196 5 0.02
ACGTcount: A:0.45, C:0.07, G:0.09, T:0.40
Consensus pattern (195 bp):
ACTTTTTTGCATTACATACATGTGGATTGGTACGATAGTATTTTAACAATTAATTAATTTGTTAA
AATTTAATAATTATAAAAAAATATAAAAAAGTTTAAAAAATTAGAATTATTAAAAATATAAAAAA
AATATTTTTAATTTTAAAAATAATTAATTATTACCTTGTCATACACTTGACTTGTAGCAAACGTT
Found at i:25928740 original size:16 final size:16
Alignment explanation
Indices: 25928714--25928752 Score: 55
Period size: 16 Copynumber: 2.5 Consensus size: 16
25928704 CATGAGATAG
25928714 AAAAA-AATAA-GGAA
1 AAAAAGAATAAGGGAA
25928728 AAAACAGAATAAGGGAA
1 AAAA-AGAATAAGGGAA
25928745 AAAAAGAA
1 AAAAAGAA
25928753 GAATTAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
14 4 0.18
15 1 0.05
16 9 0.41
17 8 0.36
ACGTcount: A:0.74, C:0.03, G:0.18, T:0.05
Consensus pattern (16 bp):
AAAAAGAATAAGGGAA
Found at i:25933099 original size:22 final size:23
Alignment explanation
Indices: 25933046--25933101 Score: 69
Period size: 22 Copynumber: 2.5 Consensus size: 23
25933036 TTTAATTAAA
* * *
25933046 ATTAAAATTAAAATTATTTTTTT
1 ATTAAAATTAAAACTATATTGTT
*
25933069 AATAAAATTAAAACTA-ATTGTT
1 ATTAAAATTAAAACTATATTGTT
25933091 ATTAAAATTAA
1 ATTAAAATTAA
25933102 TTGTTAGTAA
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
22 14 0.50
23 14 0.50
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (23 bp):
ATTAAAATTAAAACTATATTGTT
Found at i:25933114 original size:16 final size:16
Alignment explanation
Indices: 25933077--25933116 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
25933067 TTAATAAAAT
* *
25933077 TAAAACTAATTGTTAT
1 TAAAATTAATTGTTAG
25933093 TAAAATTAATTGTTAG
1 TAAAATTAATTGTTAG
25933109 TAAAATTA
1 TAAAATTA
25933117 TCAAATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.47, C:0.03, G:0.07, T:0.42
Consensus pattern (16 bp):
TAAAATTAATTGTTAG
Found at i:25933310 original size:22 final size:24
Alignment explanation
Indices: 25933270--25933313 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
25933260 AAATAAACTT
25933270 AAAATAAAAAACTATTATATTTTA
1 AAAATAAAAAACTATTATATTTTA
25933294 AAAATAAAAAA-TA-TATATTT
1 AAAATAAAAAACTATTATATTT
25933314 AATATTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 7 0.35
23 2 0.10
24 11 0.55
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (24 bp):
AAAATAAAAAACTATTATATTTTA
Found at i:25934519 original size:24 final size:24
Alignment explanation
Indices: 25934486--25934531 Score: 67
Period size: 24 Copynumber: 1.9 Consensus size: 24
25934476 TATTTATACA
25934486 ATTTTATATATCAAAT-ATTAAATT
1 ATTTTATATAT-AAATAATTAAATT
*
25934510 ATTTTTTATATAAATAATTAAA
1 ATTTTATATATAAATAATTAAA
25934532 ATTTAATGGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTTTATATATAAATAATTAAATT
Found at i:25952944 original size:13 final size:13
Alignment explanation
Indices: 25952926--25952965 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
25952916 AGTTCTTCAC
25952926 TGCTTTTGAAAAG
1 TGCTTTTGAAAAG
*
25952939 TGCTTTTGAGAAG
1 TGCTTTTGAAAAG
*
25952952 TGCTTTTAAAAAG
1 TGCTTTTGAAAAG
25952965 T
1 T
25952966 TTAGTTTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
13 24 1.00
ACGTcount: A:0.30, C:0.07, G:0.23, T:0.40
Consensus pattern (13 bp):
TGCTTTTGAAAAG
Found at i:25962717 original size:40 final size:41
Alignment explanation
Indices: 25962673--25962758 Score: 122
Period size: 40 Copynumber: 2.1 Consensus size: 41
25962663 AGGAGTATCG
* *
25962673 AAGTACT-AACAGGGGCTCGTATATGCATTCAGGGGTACCA
1 AAGTACTAAACAGGGGCACGCATATGCATTCAGGGGTACCA
* *
25962713 AAGTA-TAAACAGGGGCACGCATGTGCATTTAGGGGTACCA
1 AAGTACTAAACAGGGGCACGCATATGCATTCAGGGGTACCA
25962753 AAGTAC
1 AAGTAC
25962759 AAATTGGGAC
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
39 1 0.03
40 39 0.98
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.21
Consensus pattern (41 bp):
AAGTACTAAACAGGGGCACGCATATGCATTCAGGGGTACCA
Found at i:25962777 original size:40 final size:40
Alignment explanation
Indices: 25962696--25962783 Score: 113
Period size: 40 Copynumber: 2.2 Consensus size: 40
25962686 GGCTCGTATA
* * *
25962696 TGCATTCAGGGGTACCAAAGTATAAACAGGGGCACGCATG
1 TGCATTCAGGGGTACCAAAGTACAAACAGGGACACACATG
* ** *
25962736 TGCATTTAGGGGTACCAAAGTACAAATTGGGACACATATG
1 TGCATTCAGGGGTACCAAAGTACAAACAGGGACACACATG
25962776 TGCATTCA
1 TGCATTCA
25962784 TACAATAATT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (40 bp):
TGCATTCAGGGGTACCAAAGTACAAACAGGGACACACATG
Found at i:25977487 original size:15 final size:15
Alignment explanation
Indices: 25977469--25977503 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
25977459 AGCTTTCCAC
* *
25977469 TCTTTTACTTTCTTT
1 TCTTTTAATTTCCTT
25977484 TCTTTTAATTTCCTT
1 TCTTTTAATTTCCTT
25977499 TCTTT
1 TCTTT
25977504 CCCTTTACTA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTTTTAATTTCCTT
Found at i:25979073 original size:23 final size:25
Alignment explanation
Indices: 25979046--25979116 Score: 83
Period size: 25 Copynumber: 2.9 Consensus size: 25
25979036 ACGTCGTATA
*
25979046 TCATATTTCAATCA-C-AATTCATC
1 TCATATATCAATCAGCTAATTCATC
* *
25979069 TCATATATCATTTAGCTAATTCATC
1 TCATATATCAATCAGCTAATTCATC
* *
25979094 TCATATATCATTTAGCTAATTCA
1 TCATATATCAATCAGCTAATTCA
25979117 CATAATTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
23 11 0.26
24 1 0.02
25 31 0.72
ACGTcount: A:0.34, C:0.21, G:0.03, T:0.42
Consensus pattern (25 bp):
TCATATATCAATCAGCTAATTCATC
Found at i:25979089 original size:25 final size:25
Alignment explanation
Indices: 25979061--25979116 Score: 112
Period size: 25 Copynumber: 2.2 Consensus size: 25
25979051 TTTCAATCAC
25979061 AATTCATCTCATATATCATTTAGCT
1 AATTCATCTCATATATCATTTAGCT
25979086 AATTCATCTCATATATCATTTAGCT
1 AATTCATCTCATATATCATTTAGCT
25979111 AATTCA
1 AATTCA
25979117 CATAATTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 31 1.00
ACGTcount: A:0.34, C:0.20, G:0.04, T:0.43
Consensus pattern (25 bp):
AATTCATCTCATATATCATTTAGCT
Found at i:25980372 original size:21 final size:19
Alignment explanation
Indices: 25980347--25980394 Score: 60
Period size: 21 Copynumber: 2.4 Consensus size: 19
25980337 GTTGATTAAT
* *
25980347 TTAATTAATTATGTTTTTATC
1 TTAATTAATCAT-ATTTTA-C
25980368 TTAATTAATCATATTTTAC
1 TTAATTAATCATATTTTAC
25980387 TTAATTAA
1 TTAATTAA
25980395 GCAACAAGCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 9 0.36
20 5 0.20
21 11 0.44
ACGTcount: A:0.35, C:0.06, G:0.02, T:0.56
Consensus pattern (19 bp):
TTAATTAATCATATTTTAC
Found at i:25983140 original size:17 final size:17
Alignment explanation
Indices: 25983114--25983147 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
25983104 GGATTGTTGG
*
25983114 ATTTTTTTATTGTTATT
1 ATTTTCTTATTGTTATT
*
25983131 ATTTTCTTATTTTTATT
1 ATTTTCTTATTGTTATT
25983148 TTAATTTATT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.76
Consensus pattern (17 bp):
ATTTTCTTATTGTTATT
Found at i:25985737 original size:2 final size:2
Alignment explanation
Indices: 25985722--25985779 Score: 100
Period size: 2 Copynumber: 29.5 Consensus size: 2
25985712 GAGAATTGAA
*
25985722 AT AT AT AC AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25985763 AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT A
25985780 AAACAGATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 52 0.98
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:25988946 original size:50 final size:50
Alignment explanation
Indices: 25988775--25989068 Score: 266
Period size: 50 Copynumber: 5.7 Consensus size: 50
25988765 ACATGCCATA
** * ** *
25988775 GCCATGTCCCAGACATGGTCTTACATGGGATATTTTCTATACTATACTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTC-AT-CT-TGGTGCCAAC
* * * * * ** * * *
25988829 GCCATATCCCAAATATGCTCTTACATTGGAGTTCTCATATCGGTGCC-AT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
**
25988878 GCCATGTCCCAGACATGGTCTTACGGGGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
25988928 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
* * * * *
25988978 GCCAAGCCCCAGACATGGTCTTACATGAGACCTCTCATAGTCTCAATGATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCTC--A-TCT---TGGTGCCAAC
* *
25989034 GCCATGTCCTAGACATGGTCTTACATGGGATCTCT
1 GCCATGTCCCAGACATGGTCTTACATGGGACCTCT
25989069 TTACCCAAAT
Statistics
Matches: 198, Mismatches: 35, Indels: 12
0.81 0.14 0.05
Matches are distributed among these distances:
49 38 0.19
50 86 0.43
51 1 0.01
52 3 0.02
53 7 0.04
54 25 0.13
56 38 0.19
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACATGGGACCTCTCATCTTGGTGCCAAC
Found at i:25988953 original size:99 final size:101
Alignment explanation
Indices: 25988768--25989068 Score: 302
Period size: 99 Copynumber: 2.9 Consensus size: 101
25988758 GATAATAACA
** *
25988768 TGCCATAGCCATGTCCCAGACATGGTCTTACATGGGATATTTTCTATACTAT-ACTGCCAATGCC
1 TGCCAT-GCCATGTCCCAGACATGGTCTTACATGGGA-CCTCTCTAT-CTATGA-TGCCAATGCC
* * * * * **
25988832 ATATCCCAAATATGCTCTTACATTGGAGTTCTCATATCGG
62 ATGTCCCAGACATGGTCTTACATGGGACCTCTCATATCGG
** * *
25988872 TGCCATGCCATGTCCCAGACATGGTCTTACGGGGGACCTCTC-ATCT-TGGTGCCAACGCCATGT
1 TGCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTATGATGCCAATGCCATGT
* *
25988935 CCCAGACATGGTCTTACATGGGACCTCTCATCTTGG
66 CCCAGACATGGTCTTACATGGGACCTCTCATATCGG
* * * *
25988971 TGCCAACGCCAAGCCCCAGACATGGTCTTACATGAGACCTCTCATAGTCTCAATGATGCCAATGC
1 TGCC-ATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTC-TA-TCT--ATGATGCCAATGC
* *
25989036 CATGTCCTAGACATGGTCTTACATGGGATCTCT
61 CATGTCCCAGACATGGTCTTACATGGGACCTCT
25989069 TTACCCAAAT
Statistics
Matches: 163, Mismatches: 26, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
99 45 0.28
100 34 0.21
101 2 0.01
102 4 0.02
103 31 0.19
104 6 0.04
106 41 0.25
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.28
Consensus pattern (101 bp):
TGCCATGCCATGTCCCAGACATGGTCTTACATGGGACCTCTCTATCTATGATGCCAATGCCATGT
CCCAGACATGGTCTTACATGGGACCTCTCATATCGG
Found at i:25996396 original size:18 final size:18
Alignment explanation
Indices: 25996373--25996420 Score: 62
Period size: 17 Copynumber: 2.7 Consensus size: 18
25996363 AAAATGATGC
*
25996373 AAAAATATTATAATTAAA
1 AAAAATATAATAATTAAA
* *
25996391 AAAAAT-TAATATTTATA
1 AAAAATATAATAATTAAA
25996408 AAAAATATAATAA
1 AAAAATATAATAA
25996421 AATATTTTTT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
17 14 0.56
18 11 0.44
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (18 bp):
AAAAATATAATAATTAAA
Found at i:26011941 original size:17 final size:17
Alignment explanation
Indices: 26011919--26011979 Score: 61
Period size: 17 Copynumber: 3.5 Consensus size: 17
26011909 TATAACCATG
26011919 TGGGCCACAAGGGCATA
1 TGGGCCACAAGGGCATA
* *
26011936 TGGGCCACACA-GGAATG
1 TGGGCCACA-AGGGCATA
* *
26011953 TGGGCCCACATGGGCGTA
1 TGGG-CCACAAGGGCATA
26011971 TGGGCCACA
1 TGGGCCACA
26011980 CGAGAGCGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
17 22 0.63
18 13 0.37
ACGTcount: A:0.25, C:0.26, G:0.36, T:0.13
Consensus pattern (17 bp):
TGGGCCACAAGGGCATA
Found at i:26011973 original size:35 final size:35
Alignment explanation
Indices: 26011916--26012007 Score: 116
Period size: 35 Copynumber: 2.7 Consensus size: 35
26011906 GGGTATAACC
*
26011916 ATGTGGG-CCACAAGGGCATATGGGCCACAC-AGGA
1 ATGTGGGCCCACAAGGGCGTATGGGCCACACGA-GA
*
26011950 ATGTGGGCCCACATGGGCGTATGGGCCACACGAGA
1 ATGTGGGCCCACAAGGGCGTATGGGCCACACGAGA
** *
26011985 GCGTGGGCCCACAAGAGCGTATG
1 ATGTGGGCCCACAAGGGCGTATG
26012008 TGTTTGGGCC
Statistics
Matches: 50, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
34 7 0.14
35 42 0.84
36 1 0.02
ACGTcount: A:0.25, C:0.25, G:0.37, T:0.13
Consensus pattern (35 bp):
ATGTGGGCCCACAAGGGCGTATGGGCCACACGAGA
Found at i:26013380 original size:24 final size:22
Alignment explanation
Indices: 26013349--26013392 Score: 61
Period size: 24 Copynumber: 1.9 Consensus size: 22
26013339 TATTACATTC
26013349 AAAATTAAAATATTTATAATTTA
1 AAAATTAAAATATTTA-AATTTA
*
26013372 AAAATTTAAATTATTTAAATT
1 AAAA-TTAAAATATTTAAATT
26013393 CCTCAAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
AAAATTAAAATATTTAAATTTA
Found at i:26013382 original size:23 final size:23
Alignment explanation
Indices: 26013349--26013392 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
26013339 TATTACATTC
26013349 AAAATTAAAA-TATTTATAATTTA
1 AAAATTAAAATTATTTA-AATTTA
*
26013372 AAAATTTAAATTATTTAAATT
1 AAAATTAAAATTATTTAAATT
26013393 CCTCAAAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
AAAATTAAAATTATTTAAATTTA
Found at i:26013461 original size:15 final size:15
Alignment explanation
Indices: 26013443--26013487 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
26013433 AACTTTAACT
*
26013443 CAAAAAATCCAAACC
1 CAAAAAATTCAAACC
26013458 CAAAAAATTTCAAA-C
1 CAAAAAA-TTCAAACC
26013473 CAAAAGAATTCAAAC
1 CAAAA-AATTCAAAC
26013488 AAAATCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 19 0.73
16 7 0.27
ACGTcount: A:0.60, C:0.24, G:0.02, T:0.13
Consensus pattern (15 bp):
CAAAAAATTCAAACC
Found at i:26019895 original size:11 final size:11
Alignment explanation
Indices: 26019879--26019914 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
26019869 CCACCCCAAA
26019879 CATATACATAT
1 CATATACATAT
26019890 CATATACATAT
1 CATATACATAT
* *
26019901 CTTATACTTAT
1 CATATACATAT
26019912 CAT
1 CAT
26019915 GATCATAAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (11 bp):
CATATACATAT
Found at i:26029130 original size:18 final size:20
Alignment explanation
Indices: 26029108--26029145 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
26029098 ATAAAAAATT
26029108 AAAAAAA-TTAATTGAGCTA
1 AAAAAAACTTAATTGAGCTA
26029127 AAAAAAACTTAATTGAGCT
1 AAAAAAACTTAATTGAGCT
26029146 TTCAATGCCT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.55, C:0.08, G:0.11, T:0.26
Consensus pattern (20 bp):
AAAAAAACTTAATTGAGCTA
Found at i:26029623 original size:3 final size:3
Alignment explanation
Indices: 26029615--26029651 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
26029605 AATAACTACA
26029615 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
26029652 TGAACTTCAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:26031700 original size:71 final size:70
Alignment explanation
Indices: 26031613--26031750 Score: 168
Period size: 71 Copynumber: 2.0 Consensus size: 70
26031603 CCCCATATGT
* * * * * *
26031613 TTTAATTTGTGAACCCTAATATGATTTAGTATGTGAACCCCCATATGTTTTATTATGTGAACCCT
1 TTTAATATGCGAACCCTAATATGATTTAGTATGCGAACCCCCATATGATTTAGTATGT-AAACCT
26031678 TATGGA
65 TATGGA
* * * * *
26031684 TTTAATATGCGAACCCTTATGTGATTTATTATGCGAACCCTCATGTGATTTAGTATGTAAACCTT
1 TTTAATATGCGAACCCTAATATGATTTAGTATGCGAACCCCCATATGATTTAGTATGTAAACCTT
26031749 AT
66 AT
26031751 ATGCGAACCA
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
70 8 0.14
71 48 0.86
ACGTcount: A:0.28, C:0.16, G:0.15, T:0.41
Consensus pattern (70 bp):
TTTAATATGCGAACCCTAATATGATTTAGTATGCGAACCCCCATATGATTTAGTATGTAAACCTT
ATGGA
Found at i:26031712 original size:47 final size:47
Alignment explanation
Indices: 26031581--26031740 Score: 171
Period size: 48 Copynumber: 3.4 Consensus size: 47
26031571 CATGCAAACA
* * *
26031581 CTTATGGATTTGGTATACGAACCCCCATATGTTTTAATT-TGTGAACC
1 CTTATGGATTTAGTATGCGAACCCCCATATGATTT-ATTATGTGAACC
* *
26031628 CTAATAT-GATTTAGTATGTGAACCCCCATATGTTTTATTATGTGAACC
1 CT--TATGGATTTAGTATGCGAACCCCCATATGATTTATTATGTGAACC
* ** * *
26031676 CTTATGGATTTAATATGCGAACCCTTATGTGATTTATTATGCGAACC
1 CTTATGGATTTAGTATGCGAACCCCCATATGATTTATTATGTGAACC
*
26031723 CTCATGTGATTTAGTATG
1 CTTATG-GATTTAGTATG
26031741 TAAACCTTAT
Statistics
Matches: 96, Mismatches: 12, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
46 3 0.03
47 44 0.46
48 46 0.48
49 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (47 bp):
CTTATGGATTTAGTATGCGAACCCCCATATGATTTATTATGTGAACC
Found at i:26031716 original size:24 final size:24
Alignment explanation
Indices: 26031587--26031740 Score: 121
Period size: 24 Copynumber: 6.5 Consensus size: 24
26031577 AACACTTATG
* * * *
26031587 GATTTGGTATACGAACCCCCATAT
1 GATTTAGTATGCGAACCCTCATGT
* * * * * *
26031611 GTTTTAATTTGTGAACCCTAATAT
1 GATTTAGTATGCGAACCCTCATGT
* * *
26031635 GATTTAGTATGTGAACCCCCATAT
1 GATTTAGTATGCGAACCCTCATGT
* * * *
26031659 GTTTTATTATGTGAACCCTTATG-
1 GATTTAGTATGCGAACCCTCATGT
* *
26031682 GATTTAATATGCGAACCCTTATGT
1 GATTTAGTATGCGAACCCTCATGT
*
26031706 GATTTATTATGCGAACCCTCATGT
1 GATTTAGTATGCGAACCCTCATGT
26031730 GATTTAGTATG
1 GATTTAGTATG
26031741 TAAACCTTAT
Statistics
Matches: 105, Mismatches: 24, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
23 20 0.19
24 85 0.81
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39
Consensus pattern (24 bp):
GATTTAGTATGCGAACCCTCATGT
Found at i:26031746 original size:24 final size:24
Alignment explanation
Indices: 26031620--26031746 Score: 130
Period size: 24 Copynumber: 5.3 Consensus size: 24
26031610 TGTTTTAATT
* *
26031620 TGTGAACCCTAATATGATTTAGTA
1 TGTGAACCCTCATGTGATTTAGTA
* * * *
26031644 TGTGAACCCCCATATGTTTTATTA
1 TGTGAACCCTCATGTGATTTAGTA
* *
26031668 TGTGAACCCTTATG-GATTTAATA
1 TGTGAACCCTCATGTGATTTAGTA
* * *
26031691 TGCGAACCCTTATGTGATTTATTA
1 TGTGAACCCTCATGTGATTTAGTA
*
26031715 TGCGAACCCTCATGTGATTTAGTA
1 TGTGAACCCTCATGTGATTTAGTA
*
26031739 TGTAAACC
1 TGTGAACC
26031747 TTATATGCGA
Statistics
Matches: 87, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
23 20 0.23
24 67 0.77
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.38
Consensus pattern (24 bp):
TGTGAACCCTCATGTGATTTAGTA
Found at i:26031749 original size:47 final size:47
Alignment explanation
Indices: 26031623--26031753 Score: 138
Period size: 47 Copynumber: 2.8 Consensus size: 47
26031613 TTTAATTTGT
* ** * *
26031623 GAACCCTAATATGATTTAGTATGTGAACCCCCATATGTTTTATTATGT
1 GAACCCTAATGTGATTTAGTATGT-AACCCTTATATGATTTATTATGC
* * * *
26031671 GAACCCTTATG-GATTTAATATGCGAACCCTTATGTGATTTATTATGC
1 GAACCCTAATGTGATTTAGTATG-TAACCCTTATATGATTTATTATGC
* *
26031718 GAACCCTCATGTGATTTAGTATGTAAACCTTATATG
1 GAACCCTAATGTGATTTAGTATGTAACCCTTATATG
26031754 CGAACCATGT
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
47 48 0.72
48 19 0.28
ACGTcount: A:0.29, C:0.17, G:0.16, T:0.38
Consensus pattern (47 bp):
GAACCCTAATGTGATTTAGTATGTAACCCTTATATGATTTATTATGC
Found at i:26033192 original size:37 final size:40
Alignment explanation
Indices: 26033146--26033237 Score: 106
Period size: 37 Copynumber: 2.4 Consensus size: 40
26033136 AAATTTGTGC
*
26033146 TTAAAAATAACAT-ATAATAA-ATAATAAA-ATGTATGAT-
1 TTAAAAATAA-ATAATAATAACACAATAAATATGTATGATA
* *
26033183 TTAAAAATAATTAATAATAACACATTAAATATGTATGATA
1 TTAAAAATAAATAATAATAACACAATAAATATGTATGATA
26033223 TT-AAAATAAA-AATAA
1 TTAAAAATAAATAATAA
26033238 ATTAAATTGT
Statistics
Matches: 47, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
36 1 0.02
37 17 0.36
38 11 0.23
39 16 0.34
40 2 0.04
ACGTcount: A:0.60, C:0.03, G:0.04, T:0.33
Consensus pattern (40 bp):
TTAAAAATAAATAATAATAACACAATAAATATGTATGATA
Found at i:26040769 original size:42 final size:43
Alignment explanation
Indices: 26040689--26040774 Score: 113
Period size: 42 Copynumber: 2.0 Consensus size: 43
26040679 TTATGTTCTA
*
26040689 GAACCACACGGGTATAGGACAAAGGCATGTGCCTAGGCCGTGT
1 GAACCACACGGGTAAAGGACAAAGGCATGTGCCTAGGCCGTGT
** *
26040732 GAACCACACGGG-AAAGGACATGGGCGTGTGTCC-AGGCCGTGT
1 GAACCACACGGGTAAAGGACAAAGGCATGTG-CCTAGGCCGTGT
26040774 G
1 G
26040775 GCATATAAAT
Statistics
Matches: 38, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
42 24 0.63
43 14 0.37
ACGTcount: A:0.26, C:0.23, G:0.36, T:0.15
Consensus pattern (43 bp):
GAACCACACGGGTAAAGGACAAAGGCATGTGCCTAGGCCGTGT
Found at i:26049684 original size:31 final size:32
Alignment explanation
Indices: 26049649--26049717 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
26049639 GTATAACAAT
26049649 ATTTTGAGATAAATATTA-AATTT-ATACATAA
1 ATTTTGAGATAAATA-TACAATTTAATACATAA
* *
26049680 ATTTTG-GTTTAATATACAATTTAATACATAA
1 ATTTTGAGATAAATATACAATTTAATACATAA
26049711 ATTTTGA
1 ATTTTGA
26049718 TTTGACGTAG
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
29 2 0.06
30 11 0.33
31 20 0.61
ACGTcount: A:0.43, C:0.04, G:0.07, T:0.45
Consensus pattern (32 bp):
ATTTTGAGATAAATATACAATTTAATACATAA
Found at i:26052609 original size:19 final size:19
Alignment explanation
Indices: 26052567--26052610 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 19
26052557 AATTGAACTT
*
26052567 AAAAATTGGACTTGAGATC
1 AAAAATTGGACTTGAGAAC
26052586 AAAAATTGGA-TCTGAGAACC
1 AAAAATTGGACT-TGAGAA-C
26052606 AAAAA
1 AAAAA
26052611 CCAAGACCAA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 1 0.05
19 15 0.68
20 6 0.27
ACGTcount: A:0.50, C:0.11, G:0.18, T:0.20
Consensus pattern (19 bp):
AAAAATTGGACTTGAGAAC
Found at i:26053040 original size:61 final size:61
Alignment explanation
Indices: 26052905--26053037 Score: 200
Period size: 61 Copynumber: 2.2 Consensus size: 61
26052895 TTCAAAAATA
* *
26052905 ATATTATTTTAATAGTTTTAATATTAAATTTAATCTAATAATTATCTTATAGATAAGTATT
1 ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATAATTATCTTATAGATAAGTATT
* * *
26052966 CTATTAATTTAATAGATTTAATATTAAATTTAATCTAATATTTGTC-T-T-GATAAGTATT
1 ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATAATTATCTTATAGATAAGTATT
26053024 ATATTAATTTAATA
1 ATATTAATTTAATA
26053038 ATAAAGTGAT
Statistics
Matches: 66, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
58 23 0.35
59 1 0.02
60 1 0.02
61 41 0.62
ACGTcount: A:0.41, C:0.04, G:0.05, T:0.50
Consensus pattern (61 bp):
ATATTAATTTAATAGATTTAATATTAAATTTAATCTAATAATTATCTTATAGATAAGTATT
Found at i:26054073 original size:34 final size:34
Alignment explanation
Indices: 26054035--26054141 Score: 83
Period size: 34 Copynumber: 3.1 Consensus size: 34
26054025 AAAATAGGAT
26054035 CATATTGTGTAAGACCACAACTAGGCTATGGCAA
1 CATATTGTGTAAGACCACAACTAGGCTATGGCAA
*** ** * ** * *
26054069 CATATAAAGTCCG-CCAGAACAATAAAC-ATGGGAT
1 CATATTGTGTAAGACCACAAC--TAGGCTATGGCAA
*
26054103 CATATTGTGTAAGACCACAACTAGGCTATAGCAA
1 CATATTGTGTAAGACCACAACTAGGCTATGGCAA
26054137 CATAT
1 CATAT
26054142 AAAGTTCGCC
Statistics
Matches: 48, Mismatches: 21, Indels: 8
0.62 0.27 0.10
Matches are distributed among these distances:
33 9 0.19
34 30 0.62
35 9 0.19
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.22
Consensus pattern (34 bp):
CATATTGTGTAAGACCACAACTAGGCTATGGCAA
Done.