Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 81 of 163
Found at i:26484072 original size:9 final size:9
Alignment explanation
Indices: 26484058--26484097 Score: 50
Period size: 9 Copynumber: 4.8 Consensus size: 9
26484048 TTATGTCGTA
26484058 TTATGTAAG
1 TTATGTAAG
26484067 TTATGT-A-
1 TTATGTAAG
*
26484074 TTA-ATAAG
1 TTATGTAAG
26484082 TTATGTAAG
1 TTATGTAAG
26484091 TTATGTA
1 TTATGTA
26484098 CCATTTTAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
6 1 0.04
7 4 0.15
8 4 0.15
9 17 0.65
ACGTcount: A:0.35, C:0.00, G:0.17, T:0.47
Consensus pattern (9 bp):
TTATGTAAG
Found at i:26484770 original size:15 final size:15
Alignment explanation
Indices: 26484742--26484777 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
26484732 TTTATAAAAG
*
26484742 GAAAA-AGTAGAAAT
1 GAAAACAGTACAAAT
26484756 GAAAACAGTACAAAT
1 GAAAACAGTACAAAT
26484771 GAAAACA
1 GAAAACA
26484778 AATTGGTGGT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
14 5 0.25
15 15 0.75
ACGTcount: A:0.64, C:0.08, G:0.17, T:0.11
Consensus pattern (15 bp):
GAAAACAGTACAAAT
Found at i:26497481 original size:21 final size:21
Alignment explanation
Indices: 26497430--26497481 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 21
26497420 TCTTGCTGTG
* *
26497430 GCCTCTGCTTCTCTCGCTATA
1 GCCTCTGCTTCCCTCGCTACA
* * * *
26497451 GCATCAGCTTCCCTCGCTGCC
1 GCCTCTGCTTCCCTCGCTACA
26497472 GCCTCTGCTT
1 GCCTCTGCTT
26497482 TAAGTTGTTG
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.08, C:0.42, G:0.17, T:0.33
Consensus pattern (21 bp):
GCCTCTGCTTCCCTCGCTACA
Found at i:26504019 original size:7 final size:7
Alignment explanation
Indices: 26504009--26504054 Score: 56
Period size: 7 Copynumber: 6.0 Consensus size: 7
26503999 TGATATATTT
26504009 TTATGTA
1 TTATGTA
26504016 TTATGTAA
1 TTATGT-A
26504024 GTTATGTAA
1 -TTATGT-A
26504033 GTTATGTA
1 -TTATGTA
26504041 TTATGTA
1 TTATGTA
26504048 TTATGTA
1 TTATGTA
26504055 AGTACTGTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
7 20 0.54
8 2 0.05
9 15 0.41
ACGTcount: A:0.30, C:0.00, G:0.17, T:0.52
Consensus pattern (7 bp):
TTATGTA
Found at i:26504030 original size:9 final size:9
Alignment explanation
Indices: 26504016--26504146 Score: 102
Period size: 9 Copynumber: 15.4 Consensus size: 9
26504006 TTTTTATGTA
26504016 TTATGTAAG
1 TTATGTAAG
26504025 TTATGTAAG
1 TTATGTAAG
26504034 TTATGT-A-
1 TTATGTAAG
26504041 TTATGT-A-
1 TTATGTAAG
26504048 TTATGTAAG
1 TTATGTAAG
26504057 -TACTGTAAG
1 TTA-TGTAAG
26504066 TTATGTAAG
1 TTATGTAAG
*
26504075 TAATGT-A-
1 TTATGTAAG
*
26504082 TAATGGTAAG
1 TTAT-GTAAG
* *
26504092 TTAAG-AGG
1 TTATGTAAG
26504100 TTATGT-A-
1 TTATGTAAG
*
26504107 TAATGTAAG
1 TTATGTAAG
*
26504116 TCATGTAAG
1 TTATGTAAG
* *
26504125 TTATTTAAT
1 TTATGTAAG
26504134 TTATGTAAG
1 TTATGTAAG
26504143 TTAT
1 TTAT
26504147 TTATGTAAGT
Statistics
Matches: 99, Mismatches: 13, Indels: 20
0.75 0.10 0.15
Matches are distributed among these distances:
7 22 0.22
8 14 0.14
9 59 0.60
10 4 0.04
ACGTcount: A:0.34, C:0.02, G:0.20, T:0.44
Consensus pattern (9 bp):
TTATGTAAG
Found at i:26504150 original size:13 final size:13
Alignment explanation
Indices: 26504132--26504157 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26504122 AAGTTATTTA
26504132 ATTTATGTAAGTT
1 ATTTATGTAAGTT
26504145 ATTTATGTAAGTT
1 ATTTATGTAAGTT
26504158 GTCTTGGCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
ATTTATGTAAGTT
Found at i:26504286 original size:20 final size:20
Alignment explanation
Indices: 26504271--26504322 Score: 104
Period size: 20 Copynumber: 2.6 Consensus size: 20
26504261 GTAAGTGTTG
26504271 TATTATGTAAGTAAGTTATT
1 TATTATGTAAGTAAGTTATT
26504291 TATTATGTAAGTAAGTTATT
1 TATTATGTAAGTAAGTTATT
26504311 TATTATGTAAGT
1 TATTATGTAAGT
26504323 TTTAAGTCAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.35, C:0.00, G:0.15, T:0.50
Consensus pattern (20 bp):
TATTATGTAAGTAAGTTATT
Found at i:26504432 original size:16 final size:16
Alignment explanation
Indices: 26504413--26504448 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
26504403 CTGTAAGTGC
*
26504413 TGTATTATATAAGTTA
1 TGTATTATATAAGATA
*
26504429 TGTATTATGTAAGATA
1 TGTATTATATAAGATA
26504445 TGTA
1 TGTA
26504449 AGTAACGAGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.36, C:0.00, G:0.17, T:0.47
Consensus pattern (16 bp):
TGTATTATATAAGATA
Found at i:26504500 original size:22 final size:22
Alignment explanation
Indices: 26504472--26504585 Score: 62
Period size: 22 Copynumber: 5.4 Consensus size: 22
26504462 GTAAGCTATG
26504472 TAAGTTATGCAAGATTATAATA
1 TAAGTTATGCAAGATTATAATA
* ** *
26504494 TAAGTTATGTATTA-TGTAAT-
1 TAAGTTATGCAAGATTATAATA
* **
26504514 TTA-TTATG--TTATTAT-ATA
1 TAAGTTATGCAAGATTATAATA
* *
26504532 TAAGTTATATGGAAG-TTATTATA
1 TAAG-T-TATGCAAGATTATAATA
* *
26504555 TAAGTTATGCAAGCTTATAAAA
1 TAAGTTATGCAAGATTATAATA
26504577 TAAGTTATG
1 TAAGTTATG
26504586 TATTATGTTA
Statistics
Matches: 71, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
17 5 0.07
18 4 0.06
19 5 0.07
20 3 0.04
21 16 0.23
22 31 0.44
23 7 0.10
ACGTcount: A:0.39, C:0.03, G:0.14, T:0.44
Consensus pattern (22 bp):
TAAGTTATGCAAGATTATAATA
Found at i:26504599 original size:8 final size:7
Alignment explanation
Indices: 26504581--26504626 Score: 51
Period size: 7 Copynumber: 6.6 Consensus size: 7
26504571 ATAAAATAAG
26504581 TTATGTA
1 TTATGTA
26504588 TTATGTTA
1 TTATG-TA
26504596 TTATGTA
1 TTATGTA
26504603 TTATGTA
1 TTATGTA
*
26504610 --ATTTA
1 TTATGTA
26504615 TTATGTTA
1 TTATG-TA
26504623 TTAT
1 TTAT
26504627 ATATAAGTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 7
0.79 0.05 0.17
Matches are distributed among these distances:
5 4 0.12
7 16 0.48
8 13 0.39
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (7 bp):
TTATGTA
Found at i:26504601 original size:15 final size:15
Alignment explanation
Indices: 26504581--26504626 Score: 62
Period size: 15 Copynumber: 3.3 Consensus size: 15
26504571 ATAAAATAAG
26504581 TTATGTATTATGTTA
1 TTATGTATTATGTTA
26504596 TTATGTATTATG-TA
1 TTATGTATTATGTTA
*
26504610 --ATTTATTATGTTA
1 TTATGTATTATGTTA
26504623 TTAT
1 TTAT
26504627 ATATAAGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
12 9 0.33
13 2 0.07
14 2 0.07
15 14 0.52
ACGTcount: A:0.28, C:0.00, G:0.11, T:0.61
Consensus pattern (15 bp):
TTATGTATTATGTTA
Found at i:26504611 original size:98 final size:98
Alignment explanation
Indices: 26504498--26504718 Score: 442
Period size: 98 Copynumber: 2.3 Consensus size: 98
26504488 ATAATATAAG
26504498 TTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGTTAT
1 TTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGTTAT
26504563 GCAAGCTTATAAAATAAGTTATGTATTATGTTA
66 GCAAGCTTATAAAATAAGTTATGTATTATGTTA
26504596 TTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGTTAT
1 TTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGTTAT
26504661 GCAAGCTTATAAAATAAGTTATGTATTATGTTA
66 GCAAGCTTATAAAATAAGTTATGTATTATGTTA
26504694 TTATGTATTATGTAATTTATTATGT
1 TTATGTATTATGTAATTTATTATGT
26504719 GAGTATAGTA
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 123 1.00
ACGTcount: A:0.36, C:0.02, G:0.13, T:0.49
Consensus pattern (98 bp):
TTATGTATTATGTAATTTATTATGTTATTATATATAAGTTATATGGAAGTTATTATATAAGTTAT
GCAAGCTTATAAAATAAGTTATGTATTATGTTA
Found at i:26504863 original size:20 final size:20
Alignment explanation
Indices: 26504840--26504878 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26504830 GTTATTTATT
*
26504840 TATTTATTTAATTTAATTTA
1 TATTTATTTAATATAATTTA
* *
26504860 TATTTGTTTTATATAATTT
1 TATTTATTTAATATAATTT
26504879 TTTCACGTAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.67
Consensus pattern (20 bp):
TATTTATTTAATATAATTTA
Found at i:26505383 original size:33 final size:33
Alignment explanation
Indices: 26505345--26505448 Score: 104
Period size: 33 Copynumber: 3.2 Consensus size: 33
26505335 CTCGGGTTAA
26505345 TAAATTTAAAGTATATTAAATATAAGTTAATGG
1 TAAATTTAAAGTATATTAAATATAAGTTAATGG
* * ** * ** **
26505378 TAAA-TTCAATTATATT-TTTCTCTGCAACATGG
1 TAAATTTAAAGTATATTAAATATAAGTTA-ATGG
26505410 TAAATTTAAAGTATATTAAATATAAGTTAATGG
1 TAAATTTAAAGTATATTAAATATAAGTTAATGG
26505443 TAAATT
1 TAAATT
26505449 CAGGTCTGAT
Statistics
Matches: 50, Mismatches: 18, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
31 4 0.08
32 18 0.36
33 24 0.48
34 4 0.08
ACGTcount: A:0.43, C:0.05, G:0.11, T:0.41
Consensus pattern (33 bp):
TAAATTTAAAGTATATTAAATATAAGTTAATGG
Found at i:26505393 original size:32 final size:32
Alignment explanation
Indices: 26505353--26505450 Score: 90
Period size: 32 Copynumber: 3.0 Consensus size: 32
26505343 AATAAATTTA
26505353 AAGTATATTAAATATAAGTTAATGGTAAATTC
1 AAGTATATTAAATATAAGTTAATGGTAAATTC
* ** * ** ** *
26505385 AATTATATT-TTTCTCTGCAACATGGTAAATTTA
1 AAGTATATTAAATATAAGTTA-ATGGTAAA-TTC
26505418 AAGTATATTAAATATAAGTTAATGGTAAATTC
1 AAGTATATTAAATATAAGTTAATGGTAAATTC
26505450 A
1 A
26505451 GGTCTGATTT
Statistics
Matches: 45, Mismatches: 18, Indels: 6
0.65 0.26 0.09
Matches are distributed among these distances:
31 4 0.09
32 19 0.42
33 18 0.40
34 4 0.09
ACGTcount: A:0.43, C:0.06, G:0.11, T:0.40
Consensus pattern (32 bp):
AAGTATATTAAATATAAGTTAATGGTAAATTC
Found at i:26507612 original size:22 final size:22
Alignment explanation
Indices: 26507571--26507612 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
26507561 AGCCTAAACC
* *
26507571 CTAAATCGTAAACTCTAAACTT
1 CTAAATCGTAAACCCAAAACTT
26507593 CTAAATCGTAAACCCAAAAC
1 CTAAATCGTAAACCCAAAAC
26507613 ACCAAAACTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.45, C:0.26, G:0.05, T:0.24
Consensus pattern (22 bp):
CTAAATCGTAAACCCAAAACTT
Found at i:26507879 original size:17 final size:17
Alignment explanation
Indices: 26507857--26507906 Score: 84
Period size: 17 Copynumber: 3.0 Consensus size: 17
26507847 TATCCTATTT
26507857 CCTACATTATATAATAA
1 CCTACATTATATAATAA
26507874 CCTACATTATATAATAA
1 CCTACATTATATAATAA
*
26507891 ACTACA-TATATAATAA
1 CCTACATTATATAATAA
26507907 TCTAGCAGCG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
16 10 0.31
17 22 0.69
ACGTcount: A:0.50, C:0.16, G:0.00, T:0.34
Consensus pattern (17 bp):
CCTACATTATATAATAA
Found at i:26508588 original size:41 final size:41
Alignment explanation
Indices: 26508509--26508588 Score: 115
Period size: 41 Copynumber: 2.0 Consensus size: 41
26508499 ACGCCGCTAA
* * *
26508509 CGCCGCTAATGCTCCGGTCTTTAGCGGCGGGTTCTAAGATG
1 CGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGATG
* *
26508550 CGCCGCTAATGCTCAGGTATTTAGCGGCGCTTTTTAAGA
1 CGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGA
26508589 AATGCCGCTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.17, C:0.25, G:0.29, T:0.29
Consensus pattern (41 bp):
CGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGATG
Found at i:26508596 original size:41 final size:41
Alignment explanation
Indices: 26508507--26508599 Score: 114
Period size: 41 Copynumber: 2.3 Consensus size: 41
26508497 AAACGCCGCT
* * *
26508507 AACGCCGCTAATGCTCCGGTCTTTAGCGGCGGGTTCTAAGA
1 AACGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGA
** * *
26508548 TGCGCCGCTAATGCTCAGGTATTTAGCGGCGCTTTTTAAGA
1 AACGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGA
*
26508589 AATGCCGCTAA
1 AACGCCGCTAA
26508600 AGACTGGAGC
Statistics
Matches: 42, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.27
Consensus pattern (41 bp):
AACGCCGCTAATGCTCAGGTATTTAGCGGCGCGTTCTAAGA
Found at i:26508615 original size:41 final size:41
Alignment explanation
Indices: 26508570--26508722 Score: 161
Period size: 41 Copynumber: 3.7 Consensus size: 41
26508560 GCTCAGGTAT
*
26508570 TTAGCGGCGCTTTTTAAGAAATGCCGCTAAAGACTGGAGCA
1 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACTGGAGCA
* * * *
26508611 TTAGCGGCGCTTTCTAATAAACGGCGGTAAAGACCT-GAGCA
1 TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGA-CTGGAGCA
* * * *
26508652 TTAGCGGCGCATCTT-AGAAAACGCTGCTAAAGACAGGAGCA
1 TTAGCGGCGCTTTTTAAG-AAACGCCGCTAAAGACTGGAGCA
26508693 TTAGCGGCG-TGTTTTAA-AAAGCGCCGCTAA
1 TTAGCGGCGCT-TTTTAAGAAA-CGCCGCTAA
26508723 GGGCCCCAAC
Statistics
Matches: 90, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
40 5 0.06
41 82 0.91
42 3 0.03
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (41 bp):
TTAGCGGCGCTTTTTAAGAAACGCCGCTAAAGACTGGAGCA
Found at i:26508915 original size:41 final size:40
Alignment explanation
Indices: 26508786--26508897 Score: 138
Period size: 40 Copynumber: 2.8 Consensus size: 40
26508776 TTATTTGAAA
* * * *
26508786 ACGCCGCTAATGCTTG-TTTTTAGCGGCGTTTTAC-AAAT
1 ACGCCGCTAATGCTCGATTTTTTGTGGCGTTTTACGTAAT
* *
26508824 AGCGCCGCTAATGCTCGTTTTTTTGTGGTGTTTTACGTAAT
1 A-CGCCGCTAATGCTCGATTTTTTGTGGCGTTTTACGTAAT
*
26508865 TCGCCGCTAATGCTCGATTTTTTGTGGCGTTTT
1 ACGCCGCTAATGCTCGATTTTTTGTGGCGTTTT
26508898 TTGTCCAAAC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
38 1 0.02
39 14 0.22
40 45 0.71
41 3 0.05
ACGTcount: A:0.15, C:0.20, G:0.23, T:0.42
Consensus pattern (40 bp):
ACGCCGCTAATGCTCGATTTTTTGTGGCGTTTTACGTAAT
Found at i:26508919 original size:12 final size:12
Alignment explanation
Indices: 26508904--26508929 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
26508894 TTTTTTGTCC
26508904 AAACGCCGCTAA
1 AAACGCCGCTAA
26508916 AAACGCCGCTAA
1 AAACGCCGCTAA
26508928 AA
1 AA
26508930 CCCTATTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.46, C:0.31, G:0.15, T:0.08
Consensus pattern (12 bp):
AAACGCCGCTAA
Found at i:26513232 original size:12 final size:12
Alignment explanation
Indices: 26513217--26513261 Score: 63
Period size: 12 Copynumber: 3.8 Consensus size: 12
26513207 CGTGTCCGAA
26513217 CCCGTGTGTCCG
1 CCCGTGTGTCCG
26513229 CCCGTGTGTCCG
1 CCCGTGTGTCCG
** *
26513241 CCTATGTGTCTG
1 CCCGTGTGTCCG
26513253 CCCGTGTGT
1 CCCGTGTGT
26513262 ATATTCGAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
12 28 1.00
ACGTcount: A:0.02, C:0.36, G:0.31, T:0.31
Consensus pattern (12 bp):
CCCGTGTGTCCG
Found at i:26514352 original size:35 final size:34
Alignment explanation
Indices: 26514278--26514368 Score: 101
Period size: 35 Copynumber: 2.6 Consensus size: 34
26514268 TGCGCCTTGT
* **
26514278 GCTAGTCGGATAACCGACAATAGTTGTACCCTGC
1 GCTAGTCGGATAACCGACAATAATTGTACCCAAC
* * **
26514312 ACTAGTCGAATAATTGACAAATAATTGTACCCAAC
1 GCTAGTCGGATAACCGAC-AATAATTGTACCCAAC
*
26514347 GCTAGTCGGATAACCGAAAATA
1 GCTAGTCGGATAACCGACAATA
26514369 TCAATTTCAC
Statistics
Matches: 44, Mismatches: 12, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
34 18 0.41
35 26 0.59
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (34 bp):
GCTAGTCGGATAACCGACAATAATTGTACCCAAC
Found at i:26523163 original size:179 final size:181
Alignment explanation
Indices: 26522859--26523228 Score: 496
Period size: 179 Copynumber: 2.1 Consensus size: 181
26522849 AGGGTTTTCT
** * *
26522859 ATGATCTGCTCTACTGGAACTTCAGAGGGATAAGATCTATAATTTATAGCCTCAACCTGTTCCAC
1 ATGATCTGCTCTACTACAACTTCAGAGAGATAAGATATATAATTTATAGCCTCAACCTGTTCCAC
* * *
26522924 TACAACTTTAGGGAAATAGGATTCGCCATCTTCAGTCTGCTCCACTGCAACTTCAGGGAGATAAA
66 TACAACTTCAGGGAAATAAGATTCGCCATCTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAA
* *
26522989 ACTAGTAGCTTCAATCTACTCCACTACAACTTCGGGGAGATAAGATTCGCC
131 ACTAGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTCGCC
* * * *
26523040 ATGATCTGCTCTACTACAACTTCAGAGAGATAAGATATGTTA-TT-TAGCTTCAA-TTCGTTCCA
1 ATGATCTGCTCTACTACAACTTCAGAGAGATAAGATATATAATTTATAGCCTCAACCT-GTTCCA
* * * *
26523102 CTGCAACTTCAGGGAAATAAGATTCGCTATCTGT-AGTATGCTCCGCTGCAACTTTAGGGAGATA
65 CTACAACTTCAGGGAAATAAGATTCGCCATCT-TCAGTATGCTCCACTGCAACTTCAGGGAGATA
* * * * *
26523166 AGACTTGTAACTTTAATCTACTCCACTGCAACTTCAGGGAGATAAGATTTGCC
129 AAACTAGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTCGCC
26523219 ATGATCTGCT
1 ATGATCTGCT
26523229 TGTTCATTAA
Statistics
Matches: 165, Mismatches: 22, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
178 1 0.01
179 125 0.76
180 3 0.02
181 36 0.22
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.30
Consensus pattern (181 bp):
ATGATCTGCTCTACTACAACTTCAGAGAGATAAGATATATAATTTATAGCCTCAACCTGTTCCAC
TACAACTTCAGGGAAATAAGATTCGCCATCTTCAGTATGCTCCACTGCAACTTCAGGGAGATAAA
ACTAGTAACTTCAATCTACTCCACTACAACTTCAGGGAGATAAGATTCGCC
Found at i:26523201 original size:89 final size:89
Alignment explanation
Indices: 26522919--26523220 Score: 296
Period size: 89 Copynumber: 3.4 Consensus size: 89
26522909 CTCAACCTGT
* *
26522919 TCCACTACAACTTTAGGGAAATAGGATTCGCCATCT-TCAGTCTGCTCCACTGCAACTTCAGGGA
1 TCCACTACAACTTCAGGGAAATAAGATTCGCCATCTGT-AGTCTGCTCCACTGCAACTTCAGGGA
* * *
26522983 GATAAAACTAGTAGCTTCAATCTAC
65 GATAAGACTTGTAACTTCAATCTAC
* * * * *
26523008 TCCACTACAACTTCGGGGAGATAAGATTCGCCA--TG-A-TCTGCTCTACTACAACTTCAGAGAG
1 TCCACTACAACTTCAGGGAAATAAGATTCGCCATCTGTAGTCTGCTCCACTGCAACTTCAGGGAG
26523069 ATAAGA-TATGTTATTTAGCTTCAAT-T-C
66 ATAAGACT-TG-TA---A-CTTCAATCTAC
* * * * *
26523096 GTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTGTAGTATGCTCCGCTGCAACTTTAGGG
1 --TCCACTACAACTTCAGGGAAATAAGATTCGCCATCTGTAGTCTGCTCCACTGCAACTTCAGGG
*
26523161 AGATAAGACTTGTAACTTTAATCTAC
64 AGATAAGACTTGTAACTTCAATCTAC
* * *
26523187 TCCACTGCAACTTCAGGGAGATAAGATTTGCCAT
1 TCCACTACAACTTCAGGGAAATAAGATTCGCCAT
26523221 GATCTGCTTG
Statistics
Matches: 173, Mismatches: 24, Indels: 32
0.76 0.10 0.14
Matches are distributed among these distances:
84 1 0.01
85 28 0.16
86 3 0.02
87 1 0.01
88 1 0.01
89 67 0.39
90 38 0.22
91 1 0.01
92 2 0.01
93 3 0.02
94 27 0.16
95 1 0.01
ACGTcount: A:0.30, C:0.23, G:0.18, T:0.29
Consensus pattern (89 bp):
TCCACTACAACTTCAGGGAAATAAGATTCGCCATCTGTAGTCTGCTCCACTGCAACTTCAGGGAG
ATAAGACTTGTAACTTCAATCTAC
Found at i:26523205 original size:44 final size:43
Alignment explanation
Indices: 26522963--26523214 Score: 154
Period size: 44 Copynumber: 5.7 Consensus size: 43
26522953 CTTCAGTCTG
* * * *
26522963 CTCCACTGCAACTTCAGGGAGATAAAACTAGTAGCTTCAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTTAATCTA
* * ** * *
26523007 CTCCACTACAACTTCGGGGAGATAAGATTCG---CCATGATCTG
1 CTCCACTGCAACTTCAGGGAGATAAGATT-GTAACTTTAATCTA
* * * *
26523048 CTCTACTACAACTTCAGAGAGATAAGATATGTTATTTAGCTTCAAT-T-
1 CTCCACTGCAACTTCAGGGAGATAAGAT-TG-TA---A-CTTTAATCTA
* * * * * *
26523095 CGTTCCACTGCAACTTCAGGGAAATAAGATTCGCTATCTGTAGTATG
1 C--TCCACTGCAACTTCAGGGAGATAAGATT-G-TAACTTTAATCTA
* *
26523142 CTCCGCTGCAACTTTAGGGAGATAAGACTTGTAACTTTAATCTA
1 CTCCACTGCAACTTCAGGGAGATAAGA-TTGTAACTTTAATCTA
26523186 CTCCACTGCAACTTCAGGGAGATAAGATT
1 CTCCACTGCAACTTCAGGGAGATAAGATT
26523215 TGCCATGATC
Statistics
Matches: 157, Mismatches: 35, Indels: 33
0.70 0.16 0.15
Matches are distributed among these distances:
41 31 0.20
42 1 0.01
43 3 0.02
44 58 0.37
45 28 0.18
46 3 0.02
47 2 0.01
48 2 0.01
49 29 0.18
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (43 bp):
CTCCACTGCAACTTCAGGGAGATAAGATTGTAACTTTAATCTA
Found at i:26524956 original size:12 final size:11
Alignment explanation
Indices: 26524912--26524953 Score: 68
Period size: 12 Copynumber: 3.8 Consensus size: 11
26524902 GGCCTCTCAT
26524912 TTTTCTTTTCC
1 TTTTCTTTTCC
26524923 TTTTCTTTTTCC
1 TTTTC-TTTTCC
26524935 TTTTCTTTT-C
1 TTTTCTTTTCC
26524945 TTTTCTTTT
1 TTTTCTTTT
26524954 TTCATCATTT
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
10 10 0.33
11 9 0.30
12 11 0.37
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (11 bp):
TTTTCTTTTCC
Found at i:26524973 original size:6 final size:5
Alignment explanation
Indices: 26524912--26524953 Score: 57
Period size: 5 Copynumber: 7.8 Consensus size: 5
26524902 GGCCTCTCAT
26524912 TTTTC TTTTCC TTTTC TTTTTCC TTTTC TTTTC TTTTC TTTT
1 TTTTC TTTT-C TTTTC -TTTT-C TTTTC TTTTC TTTTC TTTT
26524954 TTCATCATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
5 20 0.59
6 13 0.38
7 1 0.03
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:26529014 original size:17 final size:16
Alignment explanation
Indices: 26528964--26529014 Score: 57
Period size: 18 Copynumber: 2.9 Consensus size: 16
26528954 ATTAAACTTT
*
26528964 AAAATAATAAAAGAATA
1 AAAATAATAACAG-ATA
26528981 AAAATAAATATACAGATA
1 AAAAT-AATA-ACAGATA
26528999 AACAATAATAACAGAT
1 AA-AATAATAACAGAT
26529015 TAATAGACAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
17 11 0.37
18 13 0.43
19 6 0.20
ACGTcount: A:0.69, C:0.06, G:0.06, T:0.20
Consensus pattern (16 bp):
AAAATAATAACAGATA
Found at i:26530215 original size:17 final size:17
Alignment explanation
Indices: 26530195--26530243 Score: 55
Period size: 19 Copynumber: 2.8 Consensus size: 17
26530185 AAAAAATGAG
26530195 TTTTGTATTTATTATATT
1 TTTTGTATTTATTAT-TT
*
26530213 TTTTGTGTTTTATTATTT
1 TTTTGT-ATTTATTATTT
26530231 GTTTT-TATTTATT
1 -TTTTGTATTTATT
26530244 TTGATTTTGG
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
17 6 0.22
18 9 0.33
19 12 0.44
ACGTcount: A:0.16, C:0.00, G:0.08, T:0.76
Consensus pattern (17 bp):
TTTTGTATTTATTATTT
Found at i:26530611 original size:20 final size:19
Alignment explanation
Indices: 26530588--26530641 Score: 54
Period size: 20 Copynumber: 2.7 Consensus size: 19
26530578 CAAGCTTATT
*
26530588 GTACCGATACTTTTCTCTAG
1 GTACCGATACATTTC-CTAG
* *
26530608 GTACCAATACATTTCCTTG
1 GTACCGATACATTTCCTAG
*
26530627 GTATCGATACCATTT
1 GTACCGATA-CATTT
26530642 TCATATTTTG
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
19 10 0.36
20 18 0.64
ACGTcount: A:0.24, C:0.24, G:0.13, T:0.39
Consensus pattern (19 bp):
GTACCGATACATTTCCTAG
Found at i:26531732 original size:22 final size:22
Alignment explanation
Indices: 26531706--26531789 Score: 87
Period size: 22 Copynumber: 3.8 Consensus size: 22
26531696 ACCCTACCAA
*
26531706 AGAGCACCGAAGTGCTAAACAG
1 AGAGCACAGAAGTGCTAAACAG
* * *
26531728 AGAGCACAAAAGTACTAATCAG
1 AGAGCACAGAAGTGCTAAACAG
* * * *
26531750 AGAGCACCGAAGTGTTGAACAA
1 AGAGCACAGAAGTGCTAAACAG
*
26531772 AGAGTACAGAAGTGCTAA
1 AGAGCACAGAAGTGCTAA
26531790 TCAATTAATA
Statistics
Matches: 47, Mismatches: 15, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 47 1.00
ACGTcount: A:0.44, C:0.18, G:0.25, T:0.13
Consensus pattern (22 bp):
AGAGCACAGAAGTGCTAAACAG
Found at i:26531790 original size:44 final size:44
Alignment explanation
Indices: 26531706--26531792 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
26531696 ACCCTACCAA
*
26531706 AGAGCACCGAAGTGCTAAACAGAGAGCACAAAAGTACTAATCAG
1 AGAGCACCGAAGTGCTAAACAAAGAGCACAAAAGTACTAATCAG
* * * * *
26531750 AGAGCACCGAAGTGTTGAACAAAGAGTACAGAAGTGCTAATCA
1 AGAGCACCGAAGTGCTAAACAAAGAGCACAAAAGTACTAATCA
26531793 ATTAATAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
44 37 1.00
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (44 bp):
AGAGCACCGAAGTGCTAAACAAAGAGCACAAAAGTACTAATCAG
Found at i:26533174 original size:31 final size:30
Alignment explanation
Indices: 26533106--26533164 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 30
26533096 GCGAGAGTTA
* *
26533106 AATAAAAACTTTCAAATAGTTTAGTGACTT
1 AATAAAAACTTTCAAATAGTTTAATAACTT
26533136 AAATAAAAACTTTCAAATAGTTTAATAAC
1 -AATAAAAACTTTCAAATAGTTTAATAAC
26533165 CATTTTAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.49, C:0.10, G:0.07, T:0.34
Consensus pattern (30 bp):
AATAAAAACTTTCAAATAGTTTAATAACTT
Found at i:26537934 original size:2 final size:2
Alignment explanation
Indices: 26537927--26537951 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26537917 TGGCCGAATG
26537927 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26537952 TTATCCAACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26538186 original size:41 final size:41
Alignment explanation
Indices: 26538127--26538354 Score: 350
Period size: 41 Copynumber: 5.6 Consensus size: 41
26538117 TTTAAACAGA
* * *
26538127 TTCACTGGCACTTCA-CCTGCTAGCCTTATAGCCTGATCCAG
1 TTCACCGGCACTT-AGCCTGCTAGGCTTATAGCCTGATTCAG
*
26538168 TTCACCGGCACTTAACCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
26538209 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
* * *
26538250 TTCACCGGCATTTAGCCTGCTAGGCTTATAGCCTAATTCGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
* *
26538291 TTCACCGGCACTTAGCCTACTAGGCTTATAGCCTGATTCGG
1 TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
*
26538332 ATCACCGGCACTTAGCCTGCTAG
1 TTCACCGGCACTTAGCCTGCTAG
26538355 ACGTAAAGTT
Statistics
Matches: 174, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
40 1 0.01
41 173 0.99
ACGTcount: A:0.20, C:0.30, G:0.21, T:0.29
Consensus pattern (41 bp):
TTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTGATTCAG
Found at i:26538377 original size:123 final size:123
Alignment explanation
Indices: 26538120--26538382 Score: 332
Period size: 123 Copynumber: 2.1 Consensus size: 123
26538110 CACTTAATTT
* * *
26538120 AAACAGATTCACTGGCACTTCA-CCTGCTAGCCTTATAGCCTGATCCAGTTCACCGGCACTTAAC
1 AAACAG-TTCACCGGCA-TTTAGCCTGCTAGCCTTATAGCCTAATCCAGTTCACCGGCACTTAAC
* * * * *
26538184 CTGCTAGGCTTATAGCCTGATTCAGTTCACCGGCACTTAGCCTGCTAGGCTTATAGCCTG
64 CTACTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGCCTG
** * * * *
26538244 ATTCAGTTCACCGGCATTTAGCCTGCTAGGCTTATAGCCTAATTCGGTTCACCGGCACTTAGCCT
1 AAACAGTTCACCGGCATTTAGCCTGCTAGCCTTATAGCCTAATCCAGTTCACCGGCACTTAACCT
* *
26538309 ACTAGGCTTATAGCCTGATTCGGATCACCGGCACTTAGCCTGCTAGACGTAAAG-TTCG
66 ACTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGCCT-G
*
26538367 AAACATTTCACCGGCA
1 AAACAGTTCACCGGCA
26538383 ATTAATCTGA
Statistics
Matches: 118, Mismatches: 19, Indels: 5
0.83 0.13 0.04
Matches are distributed among these distances:
122 4 0.03
123 110 0.93
124 4 0.03
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (123 bp):
AAACAGTTCACCGGCATTTAGCCTGCTAGCCTTATAGCCTAATCCAGTTCACCGGCACTTAACCT
ACTAGGCTTATAGCCTGATTCAGATCACCGGCACTTAGCCTGCTAGACGTAAAGCCTG
Found at i:26540094 original size:28 final size:31
Alignment explanation
Indices: 26540062--26540120 Score: 79
Period size: 28 Copynumber: 2.0 Consensus size: 31
26540052 TGTTTTGTTT
26540062 TTATTATAATAA-CATTAT-AAT-ATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
* *
26540090 TTATTATTATAACCTTTATAAATAATATAAA
1 TTATTATAATAACCATTATAAATAATATAAA
26540121 AACTATATAT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
28 11 0.42
29 5 0.19
30 3 0.12
31 7 0.27
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (31 bp):
TTATTATAATAACCATTATAAATAATATAAA
Found at i:26543392 original size:14 final size:15
Alignment explanation
Indices: 26543373--26543406 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26543363 TCATACAGCA
26543373 TCATAACTCAAATG-
1 TCATAACTCAAATGC
*
26543387 TCATAACTCATATGC
1 TCATAACTCAAATGC
26543402 TCATA
1 TCATA
26543407 TAATTATAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 13 0.72
15 5 0.28
ACGTcount: A:0.38, C:0.24, G:0.06, T:0.32
Consensus pattern (15 bp):
TCATAACTCAAATGC
Found at i:26550459 original size:17 final size:15
Alignment explanation
Indices: 26550425--26550468 Score: 52
Period size: 17 Copynumber: 2.7 Consensus size: 15
26550415 ATAACTATGA
*
26550425 TAATAAAAATAATCC
1 TAATAAAAATAATAC
26550440 TAATAAATATATAATAC
1 TAATAAA-A-ATAATAC
26550457 TAATAAACAATA
1 TAATAAA-AATA
26550469 TAGTAGTAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
15 7 0.28
16 4 0.16
17 14 0.56
ACGTcount: A:0.61, C:0.09, G:0.00, T:0.30
Consensus pattern (15 bp):
TAATAAAAATAATAC
Found at i:26550518 original size:16 final size:16
Alignment explanation
Indices: 26550493--26550523 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26550483 AAACAACACA
26550493 ATTAAAAATAAATAAT
1 ATTAAAAATAAATAAT
*
26550509 ATTAATAATAAATAA
1 ATTAAAAATAAATAA
26550524 ATACAAAAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (16 bp):
ATTAAAAATAAATAAT
Found at i:26561584 original size:40 final size:40
Alignment explanation
Indices: 26561518--26561608 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 40
26561508 GCTTCATAAA
* *
26561518 ATCAACATGGAAAGGGAAAATTAATTCTAAACTTTGCAAC
1 ATCAACATGGAAAGGGAAAATCAATTCCAAACTTTGCAAC
* * * *
26561558 ATCAACATGGTACA-GGAAGATCAATTCCGAACTTTGCAAT
1 ATCAACATGG-AAAGGGAAAATCAATTCCAAACTTTGCAAC
*
26561598 ATCAATATGGA
1 ATCAACATGGA
26561609 GACAATTTTG
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
39 1 0.02
40 40 0.93
41 2 0.05
ACGTcount: A:0.42, C:0.16, G:0.16, T:0.25
Consensus pattern (40 bp):
ATCAACATGGAAAGGGAAAATCAATTCCAAACTTTGCAAC
Found at i:26565798 original size:18 final size:20
Alignment explanation
Indices: 26565763--26565802 Score: 66
Period size: 18 Copynumber: 2.1 Consensus size: 20
26565753 ACGAAATGGA
26565763 ATATTTAATATAATTAATAT
1 ATATTTAATATAATTAATAT
26565783 ATATTT-ATATAA-TAATAT
1 ATATTTAATATAATTAATAT
26565801 AT
1 AT
26565803 GTAAAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 6 0.30
20 6 0.30
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (20 bp):
ATATTTAATATAATTAATAT
Found at i:26567798 original size:100 final size:100
Alignment explanation
Indices: 26567625--26568398 Score: 948
Period size: 100 Copynumber: 8.0 Consensus size: 100
26567615 AACTTTTGGA
** * ** *
26567625 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCCAGGAATCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
26567690 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
66 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* ** *
26567725 AAGTAGGATTCGCTGTTGTAGCTTTAATCTTTTTAAC-GACAATGTCAAGGAGGCAAGATTCACC
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTG-CAATGTCGGGGAAGCAAGATTCACC
* * * * *
26567789 GTTGTGGCTTTAATCTGCTCTATTGCATCGCCAGGG
65 GATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *** * *
26567825 AGGTAGGATTCGCCACTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGC--GATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
** *
26567888 ATGTGGCTTTAATCCATTCCACTGCATCGCCTAGGG
66 ATGTGGCTTTAATCTGTTCCACTGCACCGCC-AGGG
* *
26567924 -AGATAAGATTCGCTGTTGTAGCTTTAATCATTTTAACTGCAATGTCGGGGAAGCAAGATTCACG
1 AAG-TAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACC
26567988 GATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
65 GATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * * *
26568024 AAGTATGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTGGGGAA--ACGATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
*
26568087 ATGTGGCTTTAATCTGTACCACTGCACCGCCAGGG
66 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* *
26568122 AAGTAAGATTCGTTGTTGTAGCTTTAA------T--CTGCAATGTCAGGGAAGCAAGATTCACCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
26568179 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
66 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *
26568214 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGC--GATTCACCA
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
* *
26568277 ATGTGGCTTTAATCTGTTCCAATACACCGCCAGGG
66 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *
26568312 AAGTAAAATTCGTTGTTGTAGCTTTAA------T--CTGCAATGTCGGGGAAGCAAGATTCGCCG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
* * *
26568369 TTGTGGCTTTAATCTGTTTCACTACACCGC
66 ATGTGGCTTTAATCTGTTCCACTGCACCGC
26568399 TTGGGAGATA
Statistics
Matches: 586, Mismatches: 69, Indels: 46
0.84 0.10 0.07
Matches are distributed among these distances:
90 31 0.05
92 104 0.18
98 167 0.28
99 50 0.09
100 196 0.33
101 38 0.06
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (100 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCAAGATTCACCG
ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
Found at i:26568149 original size:50 final size:50
Alignment explanation
Indices: 26567625--26568342 Score: 304
Period size: 50 Copynumber: 14.6 Consensus size: 50
26567615 AACTTTTGGA
** * * ** **
26567625 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCCA-GG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCG-CCAGGG
* * * *
26567675 AA-TCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
1 AAGT-AAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * ** ** * *
26567725 AAGTAGGATTCGCTGTTGTAGCTTTAATCTTTTTAAC-GACAATGTCAAGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTG-CACCGCCAGGG
* * * * * * * * *
26567775 AGGCAAGATTCACCGTTGTGGCTTTAATCTGCTCTATTGCATCGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *** * * ** ** * *
26567825 AGGTAGGATTCGCCACTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *** * ** *
26567875 AAG--CGATTCACCAATGTGGCTTTAATCCATTCCACTGCATCGCCTAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCC-AGGG
** ** * *
26567924 -AGATAAGATTCGCTGTTGTAGCTTTAATCAT-TTTAACTGCAATGTCGGGG
1 AAG-TAAGATTCGCTGTTGTAGCTTTAATC-TGTTCCACTGCACCGCCAGGG
* * * * *
26567974 AAGCAAGATTCACGGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * ** ** ***
26568024 AAGTATGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *** * *
26568074 AA--ACGATTCACCAATGTGGCTTTAATCTGTACCACTGCACCGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *
26568122 AAGTAAGATTCGTTGTTGTAGCTTTAATCTG---CA----A-TGTCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * * * *
26568164 AAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * ** * ** * *
26568214 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *** * * *
26568264 AAG--CGATTCACCAATGTGGCTTTAATCTGTTCCAATACACCGCCAGGG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
* *
26568312 AAGTAAAATTCGTTGTTGTAGCTTTAATCTG
1 AAGTAAGATTCGCTGTTGTAGCTTTAATCTG
26568343 CAATGTCGGG
Statistics
Matches: 477, Mismatches: 167, Indels: 48
0.69 0.24 0.07
Matches are distributed among these distances:
42 31 0.06
43 1 0.00
45 2 0.00
47 2 0.00
48 100 0.21
49 10 0.02
50 299 0.63
51 32 0.07
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (50 bp):
AAGTAAGATTCGCTGTTGTAGCTTTAATCTGTTCCACTGCACCGCCAGGG
Found at i:26568216 original size:92 final size:92
Alignment explanation
Indices: 26568055--26568398 Score: 446
Period size: 92 Copynumber: 3.7 Consensus size: 92
26568045 CTTTAATCTT
* * * *
26568055 TTTAA-CTGCAATGTTGGGGAA--ACGATTCACCAATGTGGCTTTAATCTGTACCACTGCACCGC
1 TTTAATCTGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACCGC
26568117 CAGGGAAGTAAGATTCGTTGTTGTAGC
66 CAGGGAAGTAAGATTCGTTGTTGTAGC
* * *
26568144 TTTAATCTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
1 TTTAATCTGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACCGC
* *
26568209 CAGGGAAGTAAGATTCGCTATTGTAGC
66 CAGGGAAGTAAGATTCGTTGTTGTAGC
*
26568236 TTTAATCTTTTTAATTGCAATGTCGGGGAAGC--GATTCACCAATGTGGCTTTAATCTGTTCCAA
1 TTTAATC--------TGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCAC
*
26568299 TACACCGCCAGGGAAGTAAAATTCGTTGTTGTAGC
58 TACACCGCCAGGGAAGTAAGATTCGTTGTTGTAGC
* ** *
26568334 TTTAATCTGCAATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTACACCGC
1 TTTAATCTGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACCGC
26568399 TTGGGAGATA
Statistics
Matches: 223, Mismatches: 19, Indels: 23
0.84 0.07 0.09
Matches are distributed among these distances:
89 5 0.02
90 31 0.14
92 104 0.47
98 67 0.30
100 16 0.07
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (92 bp):
TTTAATCTGCAATGTCGGGGAAGCAAGATTCACCAATGTGGCTTTAATCTGTTCCACTACACCGC
CAGGGAAGTAAGATTCGTTGTTGTAGC
Found at i:26568226 original size:190 final size:190
Alignment explanation
Indices: 26567625--26568398 Score: 992
Period size: 190 Copynumber: 4.0 Consensus size: 190
26567615 AACTTTTGGA
* ** * *
26567625 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTCCAGGAATCAAGATTCACCG
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAA--ACGATTCACCA
*
26567690 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAGGATTCGCTGTTGTAGCTTTAATCT
64 ATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATC-
* * * * * * *
26567755 TTTTAACGACAATGTCAAGGAGGCAAGATTCACCGTTGTGGCTTTAATCTGCTCTATTGCATCGC
128 ---T---G-CAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
26567820 CAGGG
186 CAGGG
* * * * *
26567825 AGGTAGGATTCGCCACTGTGGCTTTAATCTTTTTAACTGCAATGTCGGGGAAGCGATTCACCAAT
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACGATTCACCAAT
** *
26567890 GTGGCTTTAATCCATTCCACTGCATCGCCTAGGG-AGATAAGATTCGCTGTTGTAGCTTTAATCA
66 GTGGCTTTAATCTGTTCCACTGCACCGCC-AGGGAAG-TAAGATTCGCTGTTGTAGCTTT-A--A
* *
26567954 TTTTAACTGCAATGTCGGGGAAGCAAGATTCACGGATGTGGCTTTAATCTGTTCCACTGCACCGC
126 ---T--CTGCAATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
26568019 CAGGG
186 CAGGG
* ** *
26568024 AAGTATGATTCGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTTGGGGAAACGATTCACCAAT
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACGATTCACCAAT
* *
26568089 GTGGCTTTAATCTGTACCACTGCACCGCCAGGGAAGTAAGATTCGTTGTTGTAGCTTTAATCTGC
66 GTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGC
26568154 AATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
131 AATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
* * *
26568214 AAGTAAGATTCGCTATTGTAGCTTTAATCTTTTTAATTGCAATGTCGGGGAAGCGATTCACCAAT
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACGATTCACCAAT
* * * *
26568279 GTGGCTTTAATCTGTTCCAATACACCGCCAGGGAAGTAAAATTCGTTGTTGTAGCTTTAATCTGC
66 GTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGC
* * * * *
26568344 AATGTCGGGGAAGCAAGATTCGCCGTTGTGGCTTTAATCTGTTTCACTACACCGC
131 AATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGC
26568399 TTGGGAGATA
Statistics
Matches: 513, Mismatches: 50, Indels: 32
0.86 0.08 0.05
Matches are distributed among these distances:
190 233 0.45
192 1 0.00
195 1 0.00
197 1 0.00
198 63 0.12
199 161 0.31
200 49 0.10
202 1 0.00
203 1 0.00
205 1 0.00
207 1 0.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (190 bp):
AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTCGGGGAAACGATTCACCAAT
GTGGCTTTAATCTGTTCCACTGCACCGCCAGGGAAGTAAGATTCGCTGTTGTAGCTTTAATCTGC
AATGTCAGGGAAGCAAGATTCACCGATGTGGCTTTAATCTGTTCCACTGCACCGCCAGGG
Found at i:26568538 original size:44 final size:42
Alignment explanation
Indices: 26568438--26568914 Score: 181
Period size: 44 Copynumber: 10.5 Consensus size: 42
26568428 CTATTCCCCC
** * * * * *
26568438 GTAATCTCAGGGAGATAAGACCTGA-TGCGATCTACTCTACT
1 GTAATCTCAGGGAGATAAGATTTTACTTCAATCTGCTCCACT
* * * *
26568479 GTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACT
1 GTAATC-TCAGGGAGATAAGAT--TTTACTTCAATCTGCTCCACT
* * **
26568523 GTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCT
1 GTAATCTCAGGGAGATAAGATT-TTA-CTTCAATCTGCTCCACT
* *
26568567 GTAATCTCAGGAAGATAAGATTTCTGGCTTCAATCTGCTCCACT
1 GTAATCTCAGGGAGATAAGATTT-T-ACTTCAATCTGCTCCACT
* *
26568611 GTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTACT
1 GTAATCTCAGGGAGATAAGA-TTTT-ACTTCAATC---T--G--CT-C-C-ACT
* ** * * * *
26568665 GTAA-CTTTAGAAAGATATGATCCTTATTTTAATCTGCTCCACT
1 GTAATC-TCAGGGAGATAAGAT-TTTACTTCAATCTGCTCCACT
* *
26568708 GTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTACT
1 GTAATCTCAGGGAGATAAGA-TTTT-ACTTCAATC---T--G--CT-C-C-ACT
* ** * * * *
26568762 GTAA-CTTTAGAAAGATATGATCCTTATTTTAATCTGCTCCACT
1 GTAATC-TCAGGGAGATAAGAT-TTTACTTCAATCTGCTCCACT
* * **
26568805 GTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTGCTCTGCT
1 GTAATCTCAGGGAGATAAGATT-TTA-CTTCAATCTGCTCCACT
* * *
26568849 GTAATCTCAGGAAGATAAGATTTCTGGCTTCAATCTACTCCACT
1 GTAATCTCAGGGAGATAAGATTT-T-ACTTCAATCTGCTCCACT
26568893 GTAA-CATCAGGGAGATAAGATT
1 GTAATC-TCAGGGAGATAAGATT
26568915 CACCATTTCC
Statistics
Matches: 328, Mismatches: 65, Indels: 83
0.69 0.14 0.17
Matches are distributed among these distances:
40 1 0.00
41 17 0.05
42 1 0.00
43 45 0.14
44 182 0.55
45 6 0.02
46 4 0.01
47 2 0.01
48 2 0.01
49 2 0.01
50 2 0.01
51 4 0.01
52 2 0.01
53 18 0.05
54 40 0.12
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (42 bp):
GTAATCTCAGGGAGATAAGATTTTACTTCAATCTGCTCCACT
Found at i:26568732 original size:97 final size:97
Alignment explanation
Indices: 26568598--26568841 Score: 443
Period size: 97 Copynumber: 2.5 Consensus size: 97
26568588 TTCTGGCTTC
26568598 AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTA
1 AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTA
26568663 CTGTAACTTTAGAAAGATATGATCCTTATTTT
66 CTGTAACTTTAGAAAGATATGATCCTTATTTT
26568695 AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTA
1 AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTA
26568760 CTGTAACTTTAGAAAGATATGATCCTTATTTT
66 CTGTAACTTTAGAAAGATATGATCCTTATTTT
* * ** *
26568792 AATCTGCTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCAATCTG
1 AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTG
26568842 CTCTGCTGTA
Statistics
Matches: 142, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
97 142 1.00
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.36
Consensus pattern (97 bp):
AATCTGCTCCACTGTAATCTTAGGGAGATAAGATTTTTGGCTTCAATCTGATGCGATCTACTCTA
CTGTAACTTTAGAAAGATATGATCCTTATTTT
Found at i:26569209 original size:6 final size:6
Alignment explanation
Indices: 26569198--26569231 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
26569188 GAATGCAGAG
26569198 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTT
26569232 TTTCGAGAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:26570338 original size:7 final size:7
Alignment explanation
Indices: 26570318--26570374 Score: 64
Period size: 8 Copynumber: 8.0 Consensus size: 7
26570308 TTAGCCTCTC
26570318 CATTTTT
1 CATTTTT
*
26570325 TACTTTTT
1 CA-TTTTT
26570333 CA-TTTT
1 CATTTTT
26570339 CATTTTT
1 CATTTTT
26570346 CA-TTTT
1 CATTTTT
26570352 CATTTTTT
1 CA-TTTTT
26570360 CATTTTT
1 CATTTTT
26570367 CACTTTTT
1 CA-TTTTT
26570375 TTTTGAGAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 9
0.80 0.04 0.17
Matches are distributed among these distances:
6 12 0.28
7 14 0.33
8 17 0.40
ACGTcount: A:0.14, C:0.16, G:0.00, T:0.70
Consensus pattern (7 bp):
CATTTTT
Found at i:26570344 original size:13 final size:14
Alignment explanation
Indices: 26570328--26570375 Score: 71
Period size: 13 Copynumber: 3.4 Consensus size: 14
26570318 CATTTTTTAC
26570328 TTTTTCATTTTCA-
1 TTTTTCATTTTCAT
26570341 TTTTTCATTTTCAT
1 TTTTTCATTTTCAT
26570355 TTTTTCATTTTTCACT
1 TTTTTCA-TTTTCA-T
26570371 TTTTT
1 TTTTT
26570376 TTTGAGAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
13 13 0.41
14 7 0.22
15 6 0.19
16 6 0.19
ACGTcount: A:0.12, C:0.15, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTCATTTTCAT
Found at i:26570378 original size:21 final size:21
Alignment explanation
Indices: 26570318--26570378 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 21
26570308 TTAGCCTCTC
* **
26570318 CATTTTTTACTTTTTCATTTT
1 CATTTTTCACTTTTTTTTTTT
*
26570339 CATTTTTCA-TTTTCATTTTTT
1 CATTTTTCACTTTT-TTTTTTT
26570360 CATTTTTCACTTTTTTTTT
1 CATTTTTCACTTTTTTTTT
26570379 GAGAAATCAA
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
20 4 0.12
21 25 0.76
22 4 0.12
ACGTcount: A:0.13, C:0.15, G:0.00, T:0.72
Consensus pattern (21 bp):
CATTTTTCACTTTTTTTTTTT
Found at i:26575696 original size:3 final size:3
Alignment explanation
Indices: 26575688--26575720 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
26575678 TAGTGACCAG
26575688 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26575721 ACCTATTTAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:26581981 original size:20 final size:20
Alignment explanation
Indices: 26581958--26581996 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26581948 AAATAAAAGC
26581958 ATTAAAATTTAAAAAAATAT
1 ATTAAAATTTAAAAAAATAT
***
26581978 ATTATTTTTTAAAAAAATA
1 ATTAAAATTTAAAAAAATA
26581997 AAAATTATGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATTAAAATTTAAAAAAATAT
Found at i:26582025 original size:36 final size:36
Alignment explanation
Indices: 26581985--26582053 Score: 90
Period size: 36 Copynumber: 1.9 Consensus size: 36
26581975 TATATTATTT
26581985 TTTAAAAA-AATAA-AAATTATGAAAAA-ATAAAAACTC
1 TTTAAAAATAA-AATAAATT-T-AAAAATATAAAAACTC
26582021 TTTAAAAATAAAATAAATTTAAAAATATAAAAA
1 TTTAAAAATAAAATAAATTTAAAAATATAAAAA
26582054 ATTTCAAACT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
35 5 0.17
36 18 0.60
37 7 0.23
ACGTcount: A:0.68, C:0.03, G:0.01, T:0.28
Consensus pattern (36 bp):
TTTAAAAATAAAATAAATTTAAAAATATAAAAACTC
Found at i:26582041 original size:17 final size:17
Alignment explanation
Indices: 26581985--26582057 Score: 62
Period size: 18 Copynumber: 4.2 Consensus size: 17
26581975 TATATTATTT
*
26581985 TTTAAAAAAAT-AAAAA
1 TTTAAAAATATAAAAAA
*
26582001 TTATGAAAAA-ATAAAAACTC
1 TT-T-AAAAATATAAAAA--A
26582021 TTTAAAAATA-AAATAAA
1 TTTAAAAATATAAA-AAA
26582038 TTTAAAAATATAAAAAA
1 TTTAAAAATATAAAAAA
26582055 TTT
1 TTT
26582058 CAAACTTCAA
Statistics
Matches: 47, Mismatches: 2, Indels: 15
0.73 0.03 0.23
Matches are distributed among these distances:
16 2 0.04
17 19 0.40
18 20 0.43
19 4 0.09
20 2 0.04
ACGTcount: A:0.66, C:0.03, G:0.01, T:0.30
Consensus pattern (17 bp):
TTTAAAAATATAAAAAA
Found at i:26616357 original size:22 final size:21
Alignment explanation
Indices: 26616327--26616375 Score: 53
Period size: 22 Copynumber: 2.3 Consensus size: 21
26616317 ATGAGATTTT
* *
26616327 TTTATTATAATTATATTATTA
1 TTTACTATAATTATAGTATTA
* *
26616348 TTGTACTATATTTATCGTATTA
1 TT-TACTATAATTATAGTATTA
26616370 TTTACT
1 TTTACT
26616376 GTATAATATT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.31, C:0.06, G:0.04, T:0.59
Consensus pattern (21 bp):
TTTACTATAATTATAGTATTA
Found at i:26617752 original size:30 final size:30
Alignment explanation
Indices: 26617700--26617759 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
26617690 TGATATCTTC
* * *
26617700 AGCCCATTACCACAATAGTACTCTACTCCT
1 AGCCCATTACCACAACAATACTCCACTCCT
*
26617730 AGCCCATTACCACCACAATACTCCACTCCT
1 AGCCCATTACCACAACAATACTCCACTCCT
26617760 CCTGACCCAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.30, C:0.42, G:0.05, T:0.23
Consensus pattern (30 bp):
AGCCCATTACCACAACAATACTCCACTCCT
Found at i:26618093 original size:22 final size:23
Alignment explanation
Indices: 26618063--26618106 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
26618053 GTATTTATTT
*
26618063 AATTGAGATTCATTGGAACAAAG
1 AATTGAGATTCATTGCAACAAAG
26618086 AATT-AGATTCATTGCAACAAA
1 AATTGAGATTCATTGCAACAAA
26618107 CTTGGTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 16 0.80
23 4 0.20
ACGTcount: A:0.45, C:0.11, G:0.16, T:0.27
Consensus pattern (23 bp):
AATTGAGATTCATTGCAACAAAG
Found at i:26624027 original size:21 final size:23
Alignment explanation
Indices: 26623983--26624032 Score: 66
Period size: 25 Copynumber: 2.1 Consensus size: 23
26623973 AAAGTATGGA
*
26623983 GAATAAATTTGTGTACAATAAAAAT
1 GAATAAATTTGTGTA-TA-AAAAAT
26624008 GAATAAATTTGTGT-TAAAAAAT
1 GAATAAATTTGTGTATAAAAAAT
26624030 GAA
1 GAA
26624033 AAAAATAGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 1 0.04
25 14 0.58
ACGTcount: A:0.52, C:0.02, G:0.14, T:0.32
Consensus pattern (23 bp):
GAATAAATTTGTGTATAAAAAAT
Found at i:26624044 original size:21 final size:22
Alignment explanation
Indices: 26624002--26624045 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
26623992 TGTGTACAAT
* * *
26624002 AAAAATGAATAAATTTGTGTTA
1 AAAAATGAAAAAAATAGTGTTA
26624024 AAAAATGAAAAAAATAG-GTTA
1 AAAAATGAAAAAAATAGTGTTA
26624045 A
1 A
26624046 CGAGGTGTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.59, C:0.00, G:0.14, T:0.27
Consensus pattern (22 bp):
AAAAATGAAAAAAATAGTGTTA
Found at i:26646784 original size:21 final size:22
Alignment explanation
Indices: 26646747--26646790 Score: 72
Period size: 21 Copynumber: 2.0 Consensus size: 22
26646737 TCTTTAGGGT
*
26646747 ATCTTCAGGGGTGTGTCGCGAC
1 ATCTTCAGGGCTGTGTCGCGAC
26646769 ATCTTCA-GGCTGTGTCGCGAC
1 ATCTTCAGGGCTGTGTCGCGAC
26646790 A
1 A
26646791 CTGAAAGCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.16, C:0.25, G:0.32, T:0.27
Consensus pattern (22 bp):
ATCTTCAGGGCTGTGTCGCGAC
Found at i:26656972 original size:5 final size:5
Alignment explanation
Indices: 26656964--26656997 Score: 50
Period size: 5 Copynumber: 6.8 Consensus size: 5
26656954 AATATATTAT
* *
26656964 ATATG ATATG ATATG ATATG ATATT ATATA ATAT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATAT
26656998 ATTTAGAGGG
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (5 bp):
ATATG
Found at i:26657483 original size:17 final size:17
Alignment explanation
Indices: 26657448--26657488 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
26657438 TTTCTACCGA
*
26657448 AAAATATATTATATGAT
1 AAAATATAGTATATGAT
26657465 AAAATATAGTAT-T-AT
1 AAAATATAGTATATGAT
*
26657480 ATAATATAG
1 AAAATATAG
26657489 CAGGATGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 10 0.45
16 1 0.05
17 11 0.50
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (17 bp):
AAAATATAGTATATGAT
Found at i:26663480 original size:18 final size:18
Alignment explanation
Indices: 26663459--26663497 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
26663449 AAATAAAACA
26663459 AAGGAAA-GAAAGAAAAAG
1 AAGGAAATG-AAGAAAAAG
*
26663477 AAGGAAATGAAGAAGAAG
1 AAGGAAATGAAGAAAAAG
26663495 AAG
1 AAG
26663498 AGAACGAACG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (18 bp):
AAGGAAATGAAGAAAAAG
Found at i:26664229 original size:25 final size:25
Alignment explanation
Indices: 26664181--26664229 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
26664171 CATAATTGAA
** * *
26664181 ATGAAATGGATTGATTTTGTATATT
1 ATGAAATAAATTGATTATGAATATT
26664206 ATGAAATAAATTGATTATGAATAT
1 ATGAAATAAATTGATTATGAATAT
26664230 ATGTGTATTG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.16, T:0.43
Consensus pattern (25 bp):
ATGAAATAAATTGATTATGAATATT
Found at i:26665743 original size:48 final size:49
Alignment explanation
Indices: 26665666--26665760 Score: 129
Period size: 48 Copynumber: 2.0 Consensus size: 49
26665656 CTAGAAGGGA
* * * *
26665666 TAAATAGTAATAAGAGTGTAGATAGTGGAAGACTAAGTTTAGCAATGTG
1 TAAATAGTAATAAGAGTGTAGACAGTGGAAGACCAAATTTAGAAATGTG
* *
26665715 TAAATAGTGAT-AGAGTGTAGACATTGGAAGACCAAATTTAGAAATG
1 TAAATAGTAATAAGAGTGTAGACAGTGGAAGACCAAATTTAGAAATG
26665761 CATAGCATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
48 30 0.75
49 10 0.25
ACGTcount: A:0.42, C:0.05, G:0.25, T:0.27
Consensus pattern (49 bp):
TAAATAGTAATAAGAGTGTAGACAGTGGAAGACCAAATTTAGAAATGTG
Found at i:26672251 original size:43 final size:43
Alignment explanation
Indices: 26672190--26672275 Score: 118
Period size: 43 Copynumber: 2.0 Consensus size: 43
26672180 TAAGTGATTG
* *
26672190 ATATTGAAATGGCAAATATGATAAATGAATATGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
* * * *
26672233 ATATTGAATTGACAAATATGGGAAATGATTGTGAGATGAGAAA
1 ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
26672276 TGAAATATGA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.48, C:0.02, G:0.23, T:0.27
Consensus pattern (43 bp):
ATATTGAAATGACAAATATGAGAAATGAATATGAGATGAGAAA
Found at i:26673593 original size:49 final size:49
Alignment explanation
Indices: 26673521--26673617 Score: 167
Period size: 49 Copynumber: 2.0 Consensus size: 49
26673511 TCTAGAAGGG
* * *
26673521 ATAAATAGTGATAAGAGTGTAGACAGTGGAAGACTAAGTTTAGCAATGT
1 ATAAATAGTGATAAGAGAGTAGACAGTGGAAGACCAAGTTTAGAAATGT
26673570 ATAAATAGTGATAAGAGAGTAGACAGTGGAAGACCAAGTTTAGAAATG
1 ATAAATAGTGATAAGAGAGTAGACAGTGGAAGACCAAGTTTAGAAATG
26673618 CATAGCATAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.43, C:0.06, G:0.27, T:0.24
Consensus pattern (49 bp):
ATAAATAGTGATAAGAGAGTAGACAGTGGAAGACCAAGTTTAGAAATGT
Found at i:26685822 original size:45 final size:45
Alignment explanation
Indices: 26685771--26685860 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
26685761 GAGTCATTGG
*
26685771 GTATGTTGATTCTGATTTTTCTAGAGACCTTGATAAAAGAAAATC
1 GTATGTTGATTCTGATTTTGCTAGAGACCTTGATAAAAGAAAATC
26685816 GTATGTTGATTCTGATTTTGCTAGAGACCTTGATAAAAGAAAATC
1 GTATGTTGATTCTGATTTTGCTAGAGACCTTGATAAAAGAAAATC
26685861 TTTAACAGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.33, C:0.11, G:0.19, T:0.37
Consensus pattern (45 bp):
GTATGTTGATTCTGATTTTGCTAGAGACCTTGATAAAAGAAAATC
Found at i:26688897 original size:94 final size:95
Alignment explanation
Indices: 26688781--26688969 Score: 371
Period size: 94 Copynumber: 2.0 Consensus size: 95
26688771 CACATTTGAA
26688781 TATATATATATACATTCATTTTCTCTATCAATAAGCCAAACGTAATTAATCACCAATATTTACAA
1 TATATATATATACATTCATTTTCTCTATCAATAAGCCAAACGTAATTAATCACCAATATTTACAA
26688846 GCATACTTCAATTTATAAATCATCTCCTAT
66 GCATACTTCAATTTATAAATCATCTCCTAT
26688876 TATATATATAT-CATTCATTTTCTCTATCAATAAGCCAAACGTAATTAATCACCAATATTTACAA
1 TATATATATATACATTCATTTTCTCTATCAATAAGCCAAACGTAATTAATCACCAATATTTACAA
26688940 GCATACTTCAATTTATAAATCATCTCCTAT
66 GCATACTTCAATTTATAAATCATCTCCTAT
26688970 ATTCACTTAA
Statistics
Matches: 94, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
94 83 0.88
95 11 0.12
ACGTcount: A:0.39, C:0.20, G:0.03, T:0.38
Consensus pattern (95 bp):
TATATATATATACATTCATTTTCTCTATCAATAAGCCAAACGTAATTAATCACCAATATTTACAA
GCATACTTCAATTTATAAATCATCTCCTAT
Found at i:26689166 original size:14 final size:15
Alignment explanation
Indices: 26689142--26689176 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
26689132 TATACACATT
26689142 ACCATATAAATACTA
1 ACCATATAAATACTA
26689157 ACCATA-AAATACTA
1 ACCATATAAATACTA
26689171 ATCCAT
1 A-CCAT
26689177 GATTAAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (15 bp):
ACCATATAAATACTA
Found at i:26691174 original size:28 final size:28
Alignment explanation
Indices: 26691120--26691176 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
26691110 TTTGTTTGTT
*
26691120 TTTATTATAATAACTTTATAATTTATTA
1 TTTATTATAATAACTTTATAATATATTA
*
26691148 TTTATTATTATAACCTTTATAA-ATATTA
1 TTTATTATAATAA-CTTTATAATATATTA
26691176 T
1 T
26691177 AAAAACTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
28 18 0.69
29 8 0.31
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACTTTATAATATATTA
Found at i:26698524 original size:28 final size:28
Alignment explanation
Indices: 26698484--26698540 Score: 89
Period size: 28 Copynumber: 2.0 Consensus size: 28
26698474 TATGTTTGTT
26698484 TTTATTATAATAA-CTTTATAATATATTA
1 TTTATTATAATAACCTTTATAAT-TATTA
*
26698512 TTTATTATTATAACCTTTATAATTATTA
1 TTTATTATAATAACCTTTATAATTATTA
26698540 T
1 T
26698541 AAAAACTATA
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
28 18 0.67
29 9 0.33
ACGTcount: A:0.39, C:0.05, G:0.00, T:0.56
Consensus pattern (28 bp):
TTTATTATAATAACCTTTATAATTATTA
Found at i:26700313 original size:83 final size:83
Alignment explanation
Indices: 26700216--26700465 Score: 500
Period size: 83 Copynumber: 3.0 Consensus size: 83
26700206 AAAAAATACT
26700216 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
1 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
26700281 AATACCACAACTTCATCA
66 AATACCACAACTTCATCA
26700299 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
1 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
26700364 AATACCACAACTTCATCA
66 AATACCACAACTTCATCA
26700382 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
1 TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
26700447 AATACCACAACTTCATCA
66 AATACCACAACTTCATCA
26700465 T
1 T
26700466 AGCATACATA
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 167 1.00
ACGTcount: A:0.46, C:0.17, G:0.06, T:0.32
Consensus pattern (83 bp):
TTTTACATATGATTTAGAATATTTTAACAAAATTAATAATAGCTTCTACAACGATAAGCAAAAAC
AATACCACAACTTCATCA
Found at i:26702657 original size:148 final size:149
Alignment explanation
Indices: 26702479--26702777 Score: 582
Period size: 148 Copynumber: 2.0 Consensus size: 149
26702469 ATAAAAACTA
26702479 TATTTTAAGAATTAACTTTCCCACACATATTTGATTTTTTTACTATATTCAAATACAAAAACATT
1 TATTTTAAGAATTAACTTTCCCACACATATTTGATTTTTTTACTATATTCAAATACAAAAACATT
*
26702544 CGGTGGTAGTTGAAAGACGGGTTTTTTACAAAAATAATATTAAAAAAAATAAAAATTACCAAAAT
66 CGGTGGTAGTTGAAAGACGGGTTTTTTACAAAAAAAATATTAAAAAAAATAAAAATTACCAAAAT
26702609 GTTATAATTTTTTTTTATT
131 GTTATAATTTTTTTTTATT
26702628 TATTTTAAGAATT-ACTTTCCCACACATATTTGATTTTTTTACTATATTCAAATACAAAAACATT
1 TATTTTAAGAATTAACTTTCCCACACATATTTGATTTTTTTACTATATTCAAATACAAAAACATT
26702692 CGGTGGTAGTTGAAAGACGGGTTTTTTACAAAAAAAATATTAAAAAAAATAAAAATTACCAAAAT
66 CGGTGGTAGTTGAAAGACGGGTTTTTTACAAAAAAAATATTAAAAAAAATAAAAATTACCAAAAT
26702757 GTTATAATTTTTTTTTATT
131 GTTATAATTTTTTTTTATT
26702776 TA
1 TA
26702778 CCAAAATATA
Statistics
Matches: 149, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
148 136 0.91
149 13 0.09
ACGTcount: A:0.41, C:0.10, G:0.09, T:0.40
Consensus pattern (149 bp):
TATTTTAAGAATTAACTTTCCCACACATATTTGATTTTTTTACTATATTCAAATACAAAAACATT
CGGTGGTAGTTGAAAGACGGGTTTTTTACAAAAAAAATATTAAAAAAAATAAAAATTACCAAAAT
GTTATAATTTTTTTTTATT
Found at i:26702797 original size:27 final size:28
Alignment explanation
Indices: 26702747--26702815 Score: 106
Period size: 27 Copynumber: 2.5 Consensus size: 28
26702737 AAAATAAAAA
*
26702747 TTACCAAAATGT-TATAATTTTTTTTTAT
1 TTACCAAAATATATATAA-TTTTTTTTAT
26702775 TTACCAAAATATATATAA-TTTTTTTAT
1 TTACCAAAATATATATAATTTTTTTTAT
26702802 TTACCAAAATATAT
1 TTACCAAAATATAT
26702816 CCAAAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
27 23 0.59
28 11 0.28
29 5 0.13
ACGTcount: A:0.39, C:0.09, G:0.01, T:0.51
Consensus pattern (28 bp):
TTACCAAAATATATATAATTTTTTTTAT
Found at i:26702914 original size:27 final size:27
Alignment explanation
Indices: 26702873--26702952 Score: 133
Period size: 27 Copynumber: 3.0 Consensus size: 27
26702863 ACTCCCTGGG
*
26702873 ACAAGGGAACACTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
26702900 ACAAGGGAACCCTGTTGGCGGCACCAA
1 ACAAGGGAACCCTGTTGGCGGCACCAA
**
26702927 ACAAGGGTTCCCTGTTGGCGGCACCA
1 ACAAGGGAACCCTGTTGGCGGCACCA
26702953 CTCGTGTTAT
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.28, C:0.29, G:0.30, T:0.14
Consensus pattern (27 bp):
ACAAGGGAACCCTGTTGGCGGCACCAA
Found at i:26708435 original size:22 final size:23
Alignment explanation
Indices: 26708400--26708443 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 23
26708390 ATCAATAATT
26708400 TAAAAAATAAGATATTTTTTGTA
1 TAAAAAATAAGATATTTTTTGTA
*
26708423 TAAAAAAT-TGATATTTTTTGT
1 TAAAAAATAAGATATTTTTTGT
26708444 GGTGACCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.48
Consensus pattern (23 bp):
TAAAAAATAAGATATTTTTTGTA
Found at i:26710231 original size:22 final size:20
Alignment explanation
Indices: 26710172--26710233 Score: 54
Period size: 22 Copynumber: 3.0 Consensus size: 20
26710162 GTTATTCGAG
*
26710172 TCAACTCGAATAATT-AATT
1 TCAATTCGAATAATTGAATT
* *
26710191 TGAATTTGAATCAAGTTGAATT
1 TCAATTCGAAT-AA-TTGAATT
26710213 TACAATTCGAATAACTTGAAT
1 T-CAATTCGAATAA-TTGAAT
26710234 AGTTCGAATA
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
19 8 0.24
20 2 0.06
21 2 0.06
22 13 0.39
23 8 0.24
ACGTcount: A:0.40, C:0.11, G:0.11, T:0.37
Consensus pattern (20 bp):
TCAATTCGAATAATTGAATT
Found at i:26713678 original size:20 final size:20
Alignment explanation
Indices: 26713644--26713685 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
26713634 AACTATTTAA
** *
26713644 ATAATATTATTTGAATAGTT
1 ATAATATTAAATGAATAATT
26713664 ATAATATTAAATGAATAATT
1 ATAATATTAAATGAATAATT
26713684 AT
1 AT
26713686 GTGTTTATTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.48, C:0.00, G:0.07, T:0.45
Consensus pattern (20 bp):
ATAATATTAAATGAATAATT
Found at i:26717654 original size:3 final size:3
Alignment explanation
Indices: 26717646--26717722 Score: 56
Period size: 3 Copynumber: 25.7 Consensus size: 3
26717636 ATAAATTTGA
* *
26717646 TAT TAT TAT TAT TATT TAT TAT TAT T-T TTT TAT T-T TCCT T-T TAT
1 TAT TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT
26717690 CTAT CTAT TCAT TAT TAT TA- TAT TAT TA- TAT TA
1 -TAT -TAT T-AT TAT TAT TAT TAT TAT TAT TAT TA
26717723 ATTAGTTTTG
Statistics
Matches: 64, Mismatches: 1, Indels: 18
0.77 0.01 0.22
Matches are distributed among these distances:
2 10 0.16
3 39 0.61
4 15 0.23
ACGTcount: A:0.27, C:0.06, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:26717666 original size:13 final size:13
Alignment explanation
Indices: 26717648--26717722 Score: 61
Period size: 13 Copynumber: 5.9 Consensus size: 13
26717638 AAATTTGATA
26717648 TTATTATTATTAT
1 TTATTATTATTAT
26717661 TTATTATTATT-T
1 TTATTATTATTAT
**
26717673 TT-TTATT-TTCC
1 TTATTATTATTAT
26717684 TT-TTATCTATCTAT
1 TTATTAT-TAT-TAT
*
26717698 TCATTATTATTAT
1 TTATTATTATTAT
26717711 ATTATTA-TATTA
1 -TTATTATTATTA
26717723 ATTAGTTTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 12
0.75 0.07 0.18
Matches are distributed among these distances:
10 2 0.04
11 11 0.22
12 4 0.08
13 20 0.39
14 10 0.20
15 4 0.08
ACGTcount: A:0.27, C:0.07, G:0.00, T:0.67
Consensus pattern (13 bp):
TTATTATTATTAT
Found at i:26718127 original size:20 final size:21
Alignment explanation
Indices: 26718097--26718137 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
26718087 TTATATATAT
26718097 TTATCTTATTATATCA-TTTTA
1 TTATCTTATTAT-TCACTTTTA
26718118 TTAT-TTATTATTCACTTTTA
1 TTATCTTATTATTCACTTTTA
26718138 GCTTTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 3 0.16
20 12 0.63
21 4 0.21
ACGTcount: A:0.27, C:0.10, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATCTTATTATTCACTTTTA
Found at i:26723591 original size:28 final size:24
Alignment explanation
Indices: 26723560--26723621 Score: 72
Period size: 23 Copynumber: 2.5 Consensus size: 24
26723550 AATATCTTAA
26723560 AAAAATGAAAATGATGAAAAAAGAAAAG
1 AAAAATGAAAA-GA-G-AAAAA-AAAAG
*
26723588 AAAAAT-AGAAGAGAAAAAAAAAG
1 AAAAATGAAAAGAGAAAAAAAAAG
26723611 AAAAATGAAAA
1 AAAAATGAAAA
26723622 ATTAGAAGCC
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
23 11 0.35
24 8 0.26
25 1 0.03
26 2 0.06
27 3 0.10
28 6 0.19
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (24 bp):
AAAAATGAAAAGAGAAAAAAAAAG
Found at i:26723599 original size:16 final size:16
Alignment explanation
Indices: 26723580--26723629 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
26723570 ATGATGAAAA
26723580 AAGAAAAGAAAAATAG
1 AAGAAAAGAAAAATAG
26723596 AAGAGAAA-AAAAA-AG
1 AAGA-AAAGAAAAATAG
*
26723611 AA-AAATGAAAAATTAG
1 AAGAAAAGAAAAA-TAG
26723627 AAG
1 AAG
26723630 CCAAGGTGAA
Statistics
Matches: 28, Mismatches: 1, Indels: 9
0.74 0.03 0.24
Matches are distributed among these distances:
13 2 0.07
14 6 0.21
15 4 0.14
16 13 0.46
17 3 0.11
ACGTcount: A:0.74, C:0.00, G:0.18, T:0.08
Consensus pattern (16 bp):
AAGAAAAGAAAAATAG
Found at i:26724975 original size:44 final size:45
Alignment explanation
Indices: 26724867--26724980 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
26724857 TTACAACTCT
* * *** *
26724867 TATCTCCCTGAAGTTGCAGCGGAGCAGACTGAAGATGGTGAATCT
1 TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAATGAATCC
* * *
26724912 TAAT-TCCCTAAAGTTGCAGTGGAGCAGATTAAAGCCAAT-AATCC
1 T-ATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAATGAATCC
26724956 TATCTCCCTGAAGTTGCAGTGGAGC
1 TATCTCCCTGAAGTTGCAGTGGAGC
26724981 GAATTGAAGT
Statistics
Matches: 57, Mismatches: 10, Indels: 5
0.79 0.14 0.07
Matches are distributed among these distances:
43 2 0.04
44 25 0.44
45 28 0.49
46 2 0.04
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (45 bp):
TATCTCCCTGAAGTTGCAGTGGAGCAGACTAAAGACAATGAATCC
Found at i:26725004 original size:44 final size:43
Alignment explanation
Indices: 26724847--26725027 Score: 143
Period size: 44 Copynumber: 4.1 Consensus size: 43
26724837 CCCCAGAAAA
*
26724847 CAGATTGAAGTTACAACTCTTATCTCCCTGAAGTTGCAGCGGAG
1 CAGATTGAAGTTACAA-TCTTATCTCCCTGAAGTTGCAGTGGAG
* * *
26724891 CAGACTGAAGATGGT-GAATCTTAAT-TCCCTAAAGTTGCAGTGGAG
1 CAGATTGAAG-T--TACAATCTT-ATCTCCCTGAAGTTGCAGTGGAG
* ** * *
26724936 CAGATTAAAGCCAATAATCCTATCTCCCTGAAGTTGCAGTGGAG
1 CAGATTGAAG-TTACAATCTTATCTCCCTGAAGTTGCAGTGGAG
** * * *
26724980 C-GAATTGAAGTTACAAGTCTTATCTATCTAAAGTTACAGCGGAG
1 CAG-ATTGAAGTTACAA-TCTTATCTCCCTGAAGTTGCAGTGGAG
26725024 CAGA
1 CAGA
26725028 CTAAAGCGAA
Statistics
Matches: 106, Mismatches: 22, Indels: 18
0.73 0.15 0.12
Matches are distributed among these distances:
43 6 0.06
44 63 0.59
45 32 0.30
46 4 0.04
47 1 0.01
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (43 bp):
CAGATTGAAGTTACAATCTTATCTCCCTGAAGTTGCAGTGGAG
Found at i:26725256 original size:44 final size:44
Alignment explanation
Indices: 26725190--26725779 Score: 341
Period size: 44 Copynumber: 13.0 Consensus size: 44
26725180 ATCAAGACTA
* *
26725190 AAGATAACCAACCTTATCTCCCTGAAGTTGCAGTAGAGCAGGTTG
1 AAGATAA-CAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
*
26725235 AAGATAACAATCTCATCTCCCTGAAGTTGCAGT-GAAGCAGATTG
1 AAGATAACAATCTTATCTCCCTGAAGTTGCAGTAG-AGCAGATTG
* ** * * *
26725279 AAGCTATTAATCCTATCTCCCTGAAGTTGCAGTGGAGCGGATT-
1 AAGATAACAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * * * * *
26725322 AAAATGATCAATCCTATAC-CTCTGAAGTTGCAGTAGATCGGATTAA
1 AAGAT-AACAATCTTAT-CTCCCTGAAGTTGCAGTAGAGCAGATT-G
* ** * *
26725368 ATCTACCATAACGAGCCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
1 A---A-GATAAC-AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * ** *
26725417 AAAATAGCGAATCTTATTTCCCTGAAGTTGCAGTAGAATAGATTA
1 AAGATAAC-AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * *
26725462 AAGCTATAAATTATCGATCTTATCTCTCTGAAGTTGCAGTAGAGCA-AAT-
1 AAG--AT--A--A-CAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * * * * * *
26725511 CATATCA-AACCTTATCTCCTTGAAGTTGCAGTGGAGCAGGTTA
1 AAGATAACAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * * *
26725554 AAAATAAACAATCTTATCTCCTTAAAGTTACAGTGGAGCAGATTG
1 AAGAT-AACAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * * *
26725599 AAGACAGGCTACAAATCTTATCTCCCTAAAGTTGTAGTTGAGCAGATTA
1 AAGATA----AC-AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
** * * *
26725648 AAG-CCACAAACCTTATCTCCCTGAAGTTGCAGTAGGGTAGATTG
1 AAGATAAC-AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* *
26725692 AAGAT-ACAAGTCTTATCTCCCTGAAGTTGCAGTGGAGCAGACTG
1 AAGATAACAA-TCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
* * * * *
26725736 AAGATAGCGAATCTTATTTCCCTAAAGTTGCAGTGGAACAGATT
1 AAGATAAC-AATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATT
26725780 AAAGCTATAA
Statistics
Matches: 425, Mismatches: 88, Indels: 64
0.74 0.15 0.11
Matches are distributed among these distances:
41 26 0.06
42 1 0.00
43 10 0.02
44 172 0.40
45 108 0.25
46 4 0.01
47 4 0.01
48 3 0.01
49 41 0.10
50 29 0.07
51 26 0.06
52 1 0.00
ACGTcount: A:0.33, C:0.19, G:0.20, T:0.28
Consensus pattern (44 bp):
AAGATAACAATCTTATCTCCCTGAAGTTGCAGTAGAGCAGATTG
Found at i:26726526 original size:11 final size:12
Alignment explanation
Indices: 26726502--26726532 Score: 55
Period size: 11 Copynumber: 2.7 Consensus size: 12
26726492 CTTTAAATAT
26726502 ATATATATACAA
1 ATATATATACAA
26726514 ATATATA-ACAA
1 ATATATATACAA
26726525 ATATATAT
1 ATATATAT
26726533 TTAAAAAAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
ATATATATACAA
Found at i:26728693 original size:9 final size:11
Alignment explanation
Indices: 26728666--26728694 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
26728656 TGATAAAATT
26728666 AAATATATCTC
1 AAATATATCTC
26728677 AAATATATCTC
1 AAATATATCTC
26728688 AAATATA
1 AAATATA
26728695 AATAGTATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.52, C:0.14, G:0.00, T:0.34
Consensus pattern (11 bp):
AAATATATCTC
Found at i:26729389 original size:41 final size:41
Alignment explanation
Indices: 26729332--26729612 Score: 239
Period size: 41 Copynumber: 6.9 Consensus size: 41
26729322 GATTTTTTAA
*
26729332 ATCTTTAGCGGCGTTTTTATCTAAGCGACGCTAATGCTCGG
1 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG
* * * *
26729373 ATCTTTAGTGGCGTTTTTCTATAAGCGCCGCTATTGCTCGG
1 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG
* * * *
26729414 GTATTTAGCGGCGTTGTTATCCT-AGCGCCGCTAATTCTCTGG
1 ATCTTTAGCGGCGTTTTTAT-CTAAGCGCCGCTAATGCTC-GG
* * * * *
26729456 -CCTTTGGCGGCGTTTTTATGTAAGCGCCGGTAATGGTCGG
1 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG
* * * * *
26729496 ATCTTTAGCGGCGTTTTTAACTGAGCGCCACTAATTCTCTTG
1 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTC-GG
* * * **
26729538 -TCTTCAGCGGCGTTTGTAGCTAAGCGCCGCTAATGCAT-TT
1 ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGC-TCGG
* * *
26729578 ACCTTTAGCGGCGTTTTT-GCAAAAGCGCCGCTAAT
1 ATCTTTAGCGGCGTTTTTATC-TAAGCGCCGCTAAT
26729613 AGTAACAAAA
Statistics
Matches: 190, Mismatches: 42, Indels: 16
0.77 0.17 0.06
Matches are distributed among these distances:
40 6 0.03
41 179 0.94
42 5 0.03
ACGTcount: A:0.17, C:0.23, G:0.25, T:0.35
Consensus pattern (41 bp):
ATCTTTAGCGGCGTTTTTATCTAAGCGCCGCTAATGCTCGG
Found at i:26729564 original size:123 final size:123
Alignment explanation
Indices: 26729334--26729595 Score: 291
Period size: 123 Copynumber: 2.1 Consensus size: 123
26729324 TTTTTTAAAT
* *
26729334 CTTTAGCGGCGTTTTTATCTAAGCGACGCTAATGCTCGGATCTTTAGTGGCGTTTTTCTATAAGC
1 CTTTAGCGGCGTTTTTATCTAAGCGACGCTAATGCTCGGATCTTTAGCGGCGTTTTTCAATAAGC
* *
26729399 GCCGCTATTGCTCGGGTATTTAGCGGCGTTGTTATCCTAGCGCCGCTAATTCTCTGGC
66 GCCACTATTGCTCGGGTATTCAGCGGCGTTGTTATCCTAGCGCCGCTAATTCTCTGGC
* * * * * *
26729457 CTTTGGCGGCGTTTTTATGTAAGCGCCGGTAATGGTCGGATCTTTAGCGGCGTTTTT-AACTGAG
1 CTTTAGCGGCGTTTTTATCTAAGCGACGCTAATGCTCGGATCTTTAGCGGCGTTTTTCAA-TAAG
** * * * **
26729521 CGCCACTAATT-CTCTTGTCTTCAGCGGCGTT-TGTA-GCTAAGCGCCGCTAATGCAT-TTAC
65 CGCCACT-ATTGCTCGGGTATTCAGCGGCGTTGT-TATCCT-AGCGCCGCTAATTC-TCTGGC
26729580 CTTTAGCGGCGTTTTT
1 CTTTAGCGGCGTTTTT
26729596 GCAAAAGCGC
Statistics
Matches: 116, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
122 4 0.03
123 108 0.93
124 4 0.03
ACGTcount: A:0.16, C:0.23, G:0.26, T:0.36
Consensus pattern (123 bp):
CTTTAGCGGCGTTTTTATCTAAGCGACGCTAATGCTCGGATCTTTAGCGGCGTTTTTCAATAAGC
GCCACTATTGCTCGGGTATTCAGCGGCGTTGTTATCCTAGCGCCGCTAATTCTCTGGC
Found at i:26744462 original size:86 final size:87
Alignment explanation
Indices: 26744328--26744530 Score: 221
Period size: 86 Copynumber: 2.3 Consensus size: 87
26744318 GTTTTTGGTC
* *
26744328 AAAGCGCCGCTAAAGATTAGGGTCTTTTGCGGCGTTTGTGGAAAAGGCGCCACTAAAGA-TCATG
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTGTGGAAAAGGCGCCACTAAAGACCCATG
*
26744392 GTCTTTAGCGGCGTTTGTAATG
66 ATCTTTAGCGGCGTTTGTAATG
* * *** * *
26744414 AAAGCGCCGCTAAAGATTAGGTTCTTTAGTGGCGTTTGCT-GTCGAGGCGCCGCTAAAGACCCCT
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTG-TGGAAAAGGCGCCACTAAAGACCCAT
* * ****
26744478 GATCTTTAGCGGCGCTTATCCCA
65 GATCTTTAGCGGCGTTTGTAATG
* *
26744501 AAAACGCCGCTAAAGATCAGGGTCTTTAGC
1 AAAGCGCCGCTAAAGATTAGGGTCTTTAGC
26744531 AGCGCTTCTA
Statistics
Matches: 95, Mismatches: 20, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
86 50 0.53
87 45 0.47
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (87 bp):
AAAGCGCCGCTAAAGATTAGGGTCTTTAGCGGCGTTTGTGGAAAAGGCGCCACTAAAGACCCATG
ATCTTTAGCGGCGTTTGTAATG
Found at i:26744464 original size:43 final size:42
Alignment explanation
Indices: 26744308--26744472 Score: 163
Period size: 43 Copynumber: 3.9 Consensus size: 42
26744298 GGTGTTTTGC
* *
26744308 CTTTAGTGGCGTTTTTGGTCAAAGCGCCGCTAAAGATTAGGGT
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATTA-GGT
* * * *
26744351 CTTTTGCGGCGTTTGTGG-AAAAGGCGCCACTAAAGATCATGGT
1 CTTTAGCGGCGTTTGTGGTCAAA-GCGCCGCTAAAGATTA-GGT
** *
26744394 CTTTAGCGGCGTTTGTAATGAAAGCGCCGCTAAAGATTAGGTT
1 CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATTAGG-T
* * *
26744437 CTTTAGTGGCGTTTGCT-GTCGAGGCGCCGCTAAAGA
1 CTTTAGCGGCGTTTG-TGGTCAAAGCGCCGCTAAAGA
26744473 CCCCTGATCT
Statistics
Matches: 100, Mismatches: 18, Indels: 8
0.79 0.14 0.06
Matches are distributed among these distances:
42 5 0.05
43 91 0.91
44 4 0.04
ACGTcount: A:0.22, C:0.18, G:0.30, T:0.30
Consensus pattern (42 bp):
CTTTAGCGGCGTTTGTGGTCAAAGCGCCGCTAAAGATTAGGT
Found at i:26744634 original size:129 final size:128
Alignment explanation
Indices: 26744375--26744644 Score: 296
Period size: 129 Copynumber: 2.1 Consensus size: 128
26744365 GTGGAAAAGG
* * * * *
26744375 CGCCACTAAAGATCATGGTCTTTAGCGGCGTTTGTAATGAAAGCGCCGCTAAAGATTAGGTTCTT
1 CGCCGCTAAAGATCAGGGTCTTTAGCAGCGCTTCTAATGAAAGCGCCGCTAAAGATTA-GTTCTT
* * * * * *
26744440 TAGTGGCGTTTGCTGTCGAGGCGCCGCTAAAGACCCCTGATCTTTAGCGGCGCTTATCCCAAAAA
65 CAGCGGCGTTTGCTGTAGAAGCGCCGCTAAAGACCAC-GACCTTTAGCGGCGCTTATCCCAAAAA
* *
26744505 CGCCGCTAAAGATCAGGGTCTTTAGCAGCGCTTCTACT-AAAGCGCCGCTAAAGGTCTTA-TTCT
1 CGCCGCTAAAGATCAGGGTCTTTAGCAGCGCTTCTAATGAAAGCGCCGCTAAA-G-ATTAGTTCT
* * **
26744568 TCAGCGGCGTTTG-TGCTAGAAGCGCCGCTAAAGACCAAC-ACCTTTAGCGGCGTTTATTTCTGA
64 TCAGCGGCGTTTGCTG-TAGAAGCGCCGCTAAAGACC-ACGACCTTTAGCGGCGCTTA-TCCCAA
26744631 AAA
126 AAA
26744634 CGCCGCTAAAG
1 CGCCGCTAAAG
26744645 TTAGCGGCGC
Statistics
Matches: 118, Mismatches: 17, Indels: 11
0.81 0.12 0.08
Matches are distributed among these distances:
128 17 0.14
129 64 0.54
130 34 0.29
131 3 0.03
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.26
Consensus pattern (128 bp):
CGCCGCTAAAGATCAGGGTCTTTAGCAGCGCTTCTAATGAAAGCGCCGCTAAAGATTAGTTCTTC
AGCGGCGTTTGCTGTAGAAGCGCCGCTAAAGACCACGACCTTTAGCGGCGCTTATCCCAAAAA
Found at i:26748410 original size:167 final size:167
Alignment explanation
Indices: 26748134--26748466 Score: 630
Period size: 167 Copynumber: 2.0 Consensus size: 167
26748124 ATTGATAATC
* *
26748134 TTACTGTCATTCATTTTACTTTGTATCCACACATAAGTACTATTATGGTATTTACTACTGGAAAT
1 TTACTGTCATTCATTTTACTTTGTATCCACACATAAGTACTATTATGGCATTTACCACTGGAAAT
*
26748199 GTCTAAATCAATGTGAAGTCTATAATGTCACTAAGTCAACAAAATAAATATAAATTCTAAATAAT
66 GTCTAAATCAATGTGAAGTCTATAATGTCACTAAGTCAACAAAATAAATATAAATTCCAAATAAT
26748264 TATATGCAATATTCGCTTCAAGGAATATGCCAAAATT
131 TATATGCAATATTCGCTTCAAGGAATATGCCAAAATT
26748301 TTACTGTCATTCATTTTACTTTGTATCCACACATAAGTACTATTATGGCATTTACCACTGGAAAT
1 TTACTGTCATTCATTTTACTTTGTATCCACACATAAGTACTATTATGGCATTTACCACTGGAAAT
26748366 GTCTAAATCAATGTGAAGTCTATAATGTCACTAAGTCAACAAAATAAATATAAATTCCAAATAAT
66 GTCTAAATCAATGTGAAGTCTATAATGTCACTAAGTCAACAAAATAAATATAAATTCCAAATAAT
*
26748431 TATATGCAATATTCGCTTCAAGGAATATGTCAAAAT
131 TATATGCAATATTCGCTTCAAGGAATATGCCAAAAT
26748467 CTTTTTTTCT
Statistics
Matches: 162, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
167 162 1.00
ACGTcount: A:0.38, C:0.16, G:0.11, T:0.35
Consensus pattern (167 bp):
TTACTGTCATTCATTTTACTTTGTATCCACACATAAGTACTATTATGGCATTTACCACTGGAAAT
GTCTAAATCAATGTGAAGTCTATAATGTCACTAAGTCAACAAAATAAATATAAATTCCAAATAAT
TATATGCAATATTCGCTTCAAGGAATATGCCAAAATT
Found at i:26756414 original size:19 final size:18
Alignment explanation
Indices: 26756367--26756414 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
26756357 AATATTATTT
26756367 TAAAAACTAAATAAAACA
1 TAAAAACTAAATAAAACA
* *
26756385 AAAAAATTAAATTAAAA-A
1 TAAAAACTAAA-TAAAACA
26756403 TAAATAACTAAA
1 TAAA-AACTAAA
26756415 CTTATGATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 13 0.54
19 11 0.46
ACGTcount: A:0.73, C:0.06, G:0.00, T:0.21
Consensus pattern (18 bp):
TAAAAACTAAATAAAACA
Found at i:26761990 original size:12 final size:12
Alignment explanation
Indices: 26761973--26761997 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
26761963 CTCCTTTTTC
26761973 TTTTTTGTTCTT
1 TTTTTTGTTCTT
26761985 TTTTTTGTTCTT
1 TTTTTTGTTCTT
26761997 T
1 T
26761998 ATTTCTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.08, G:0.08, T:0.84
Consensus pattern (12 bp):
TTTTTTGTTCTT
Found at i:26784315 original size:30 final size:30
Alignment explanation
Indices: 26784281--26784345 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
26784271 CAACTTAACA
*
26784281 AACAAATGCCTCTAAAATTATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
*
26784311 AACAAATGCCTTTAAAATAATAACAAAATT
1 AACAAATGCCTCTAAAATAATAACAAAATT
26784341 AACAA
1 AACAA
26784346 TAAAATAATT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.57, C:0.15, G:0.03, T:0.25
Consensus pattern (30 bp):
AACAAATGCCTCTAAAATAATAACAAAATT
Found at i:26784400 original size:22 final size:22
Alignment explanation
Indices: 26784375--26784417 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
26784365 TATCTAAACA
26784375 ATAACAATAAAATAGTAGCAAC
1 ATAACAATAAAATAGTAGCAAC
* * *
26784397 ATAATAGTAAAATGGTAGCAA
1 ATAACAATAAAATAGTAGCAA
26784418 AATAGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.56, C:0.09, G:0.14, T:0.21
Consensus pattern (22 bp):
ATAACAATAAAATAGTAGCAAC
Found at i:26786132 original size:132 final size:133
Alignment explanation
Indices: 26785969--26786235 Score: 527
Period size: 132 Copynumber: 2.0 Consensus size: 133
26785959 TAAAGAAATA
26785969 AACTATTAAAAATTAAAATTACTAAAAGAATTTTCCCCTGATTAATTCCCTTTGAAATAAAGTTA
1 AACTATTAAAAATTAAAATTACTAAAAGAATTTTCCCCTGATTAATTCCCTTTGAAATAAAGTTA
26786034 AATTTATAATTTGAAGTGACTAATTGACGCATATTACACTACTCTTCATCATAGTGAAAGTTTGA
66 AATTTATAATTTGAAGTGACTAATTGACGCATATTACACTACTCTTCATCATAGTGAAAGTTTGA
26786099 ATC
131 ATC
26786102 AACTATT-AAAATTAAAATTACTAAAAGAATTTTCCCCTGATTAATTCCCTTTGAAATAAAGTTA
1 AACTATTAAAAATTAAAATTACTAAAAGAATTTTCCCCTGATTAATTCCCTTTGAAATAAAGTTA
26786166 AATTTATAATTTGAAGTGACTAATTGACGCATATTACACTACTCTTCATCATAGTGAAAGTTTGA
66 AATTTATAATTTGAAGTGACTAATTGACGCATATTACACTACTCTTCATCATAGTGAAAGTTTGA
26786231 ATC
131 ATC
26786234 AA
1 AA
26786236 GATTTTTAAG
Statistics
Matches: 134, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
132 127 0.95
133 7 0.05
ACGTcount: A:0.40, C:0.14, G:0.10, T:0.36
Consensus pattern (133 bp):
AACTATTAAAAATTAAAATTACTAAAAGAATTTTCCCCTGATTAATTCCCTTTGAAATAAAGTTA
AATTTATAATTTGAAGTGACTAATTGACGCATATTACACTACTCTTCATCATAGTGAAAGTTTGA
ATC
Found at i:26788250 original size:17 final size:17
Alignment explanation
Indices: 26788223--26788268 Score: 74
Period size: 17 Copynumber: 2.6 Consensus size: 17
26788213 AGAGTAACTC
26788223 CCAATGGAAAGTTAGATT
1 CCAA-GGAAAGTTAGATT
*
26788241 CTAAGGAAAGTTAGATT
1 CCAAGGAAAGTTAGATT
26788258 CCAAGGAAAGT
1 CCAAGGAAAGT
26788269 AAATAAATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
17 23 0.88
18 3 0.12
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (17 bp):
CCAAGGAAAGTTAGATT
Found at i:26790504 original size:22 final size:23
Alignment explanation
Indices: 26790450--26790502 Score: 97
Period size: 23 Copynumber: 2.3 Consensus size: 23
26790440 ATCAAGGTTT
*
26790450 ATAAAAAATATATTTGATTAAAA
1 ATAAAAAATATATTTCATTAAAA
26790473 ATAAAAAATATATTTCATTAAAA
1 ATAAAAAATATATTTCATTAAAA
26790496 ATAAAAA
1 ATAAAAA
26790503 TAAAAATATT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (23 bp):
ATAAAAAATATATTTCATTAAAA
Found at i:26792214 original size:9 final size:10
Alignment explanation
Indices: 26792194--26792222 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
26792184 ATTGTGCGTT
26792194 TGAATAGAAA
1 TGAATAGAAA
26792204 TGAAT-GAAA
1 TGAATAGAAA
26792213 TGAATAGAAA
1 TGAATAGAAA
26792223 AAGAGAAATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.59, C:0.00, G:0.21, T:0.21
Consensus pattern (10 bp):
TGAATAGAAA
Found at i:26792508 original size:25 final size:26
Alignment explanation
Indices: 26792463--26792511 Score: 66
Period size: 25 Copynumber: 1.9 Consensus size: 26
26792453 ACATATTTTC
*
26792463 TCAAAATTTTACTAGGTGTAAAATTG
1 TCAAAATTTTACTAAGTGTAAAATTG
26792489 TCAAAA-TTTACTGAAG-GTAAAAT
1 TCAAAATTTTACT-AAGTGTAAAAT
26792512 AAGGGTGAGA
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.43, C:0.08, G:0.14, T:0.35
Consensus pattern (26 bp):
TCAAAATTTTACTAAGTGTAAAATTG
Found at i:26793766 original size:13 final size:13
Alignment explanation
Indices: 26793748--26793772 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26793738 TATACATATG
26793748 TTTTGTAATTAAA
1 TTTTGTAATTAAA
26793761 TTTTGTAATTAA
1 TTTTGTAATTAA
26793773 CTACATCGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.08, T:0.56
Consensus pattern (13 bp):
TTTTGTAATTAAA
Found at i:26798257 original size:26 final size:27
Alignment explanation
Indices: 26798206--26798257 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 27
26798196 TAAATTCTCT
* *
26798206 TTGAGTTTTTCTTTTCAAGAATTTTTC
1 TTGAGTTTTTCTTTTCAAAAAGTTTTC
26798233 TTGAG-TTTTCTTTT-AGAAAAGTTTT
1 TTGAGTTTTTCTTTTCA-AAAAGTTTT
26798258 AACAATCTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 1 0.05
26 16 0.73
27 5 0.23
ACGTcount: A:0.21, C:0.08, G:0.13, T:0.58
Consensus pattern (27 bp):
TTGAGTTTTTCTTTTCAAAAAGTTTTC
Found at i:26806630 original size:14 final size:14
Alignment explanation
Indices: 26806611--26806638 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
26806601 TTAGCTTCTC
26806611 CTCCCATTAACCCA
1 CTCCCATTAACCCA
26806625 CTCCCATTAACCCA
1 CTCCCATTAACCCA
26806639 ATCCAAACGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.50, G:0.00, T:0.21
Consensus pattern (14 bp):
CTCCCATTAACCCA
Found at i:26810945 original size:13 final size:13
Alignment explanation
Indices: 26810927--26810954 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
26810917 CACACCTGGG
26810927 AAGTTCATTTTCC
1 AAGTTCATTTTCC
26810940 AAGTTCATTTTCC
1 AAGTTCATTTTCC
26810953 AA
1 AA
26810955 TTATAATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.21, G:0.07, T:0.43
Consensus pattern (13 bp):
AAGTTCATTTTCC
Found at i:26813379 original size:21 final size:23
Alignment explanation
Indices: 26813353--26813403 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
26813343 TTATAAAATT
26813353 TTAATTTAT-T-TATT-CATTAAA
1 TTAATTTATGTATATTGCA-TAAA
*
26813374 TTAATTTTTGTATATTGCATAAA
1 TTAATTTATGTATATTGCATAAA
26813397 TTAATTT
1 TTAATTT
26813404 GATAAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 8 0.31
22 1 0.04
23 15 0.58
24 2 0.08
ACGTcount: A:0.35, C:0.04, G:0.04, T:0.57
Consensus pattern (23 bp):
TTAATTTATGTATATTGCATAAA
Found at i:26813592 original size:16 final size:16
Alignment explanation
Indices: 26813571--26813634 Score: 101
Period size: 16 Copynumber: 4.0 Consensus size: 16
26813561 TTTGGTTCGC
26813571 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
26813587 TGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
* *
26813603 TGTAATGAAATAGATG
1 TGTAATGGAATAGAGG
*
26813619 CGTAATGGAATAGAGG
1 TGTAATGGAATAGAGG
26813635 CATAATAGGT
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 43 1.00
ACGTcount: A:0.39, C:0.02, G:0.34, T:0.25
Consensus pattern (16 bp):
TGTAATGGAATAGAGG
Found at i:26813706 original size:44 final size:46
Alignment explanation
Indices: 26813622--26813710 Score: 128
Period size: 44 Copynumber: 2.0 Consensus size: 46
26813612 ATAGATGCGT
*
26813622 AATGGAATAGAGGCATAATAGGTAAATCTTTTGTTTGGTTGAATGA
1 AATGGAATAGAGGCATAATAGGTAAATCTTGTGTTTGGTTGAATGA
* * *
26813668 AATGGAATAGGGGCGTAAT-GGT-ATTCTTGTGTTTGGTTGAATG
1 AATGGAATAGAGGCATAATAGGTAAATCTTGTGTTTGGTTGAATG
26813711 TAATAGAGGT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 19 0.49
45 3 0.08
46 17 0.44
ACGTcount: A:0.29, C:0.04, G:0.30, T:0.36
Consensus pattern (46 bp):
AATGGAATAGAGGCATAATAGGTAAATCTTGTGTTTGGTTGAATGA
Found at i:26825513 original size:33 final size:33
Alignment explanation
Indices: 26825487--26825564 Score: 93
Period size: 33 Copynumber: 2.4 Consensus size: 33
26825477 TGCTCACTCA
* *
26825487 AGCCAATCCATCCATCACACCAATGCTTATAAG
1 AGCCAATCCAACCATCACACCAATGCTCATAAG
* * * *
26825520 AGCTAATTCAACCATCATACCAATGCTCATAAA
1 AGCCAATCCAACCATCACACCAATGCTCATAAG
*
26825553 AGCTAATCCAAC
1 AGCCAATCCAAC
26825565 TAGACACCAA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.40, C:0.31, G:0.08, T:0.22
Consensus pattern (33 bp):
AGCCAATCCAACCATCACACCAATGCTCATAAG
Found at i:26828624 original size:4 final size:4
Alignment explanation
Indices: 26828615--26828639 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
26828605 TGATTTTTGT
26828615 TATC TATC TATC TATC TATC TATC T
1 TATC TATC TATC TATC TATC TATC T
26828640 TCTTCTTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Found at i:26830942 original size:20 final size:20
Alignment explanation
Indices: 26830917--26830956 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
26830907 AAATATTTTC
26830917 AGTAAATCATCTTCCAGAAA
1 AGTAAATCATCTTCCAGAAA
* *
26830937 AGTAAATCATTTTCTAGAAA
1 AGTAAATCATCTTCCAGAAA
26830957 TCATTTTCCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.15, G:0.10, T:0.30
Consensus pattern (20 bp):
AGTAAATCATCTTCCAGAAA
Found at i:26830958 original size:34 final size:33
Alignment explanation
Indices: 26830907--26830971 Score: 87
Period size: 34 Copynumber: 1.9 Consensus size: 33
26830897 AAACACCAGA
26830907 AAATATTTTCAGTAAATCATCTTCCAGAAAAGT
1 AAATATTTTCAGTAAATCATCTTCCAGAAAAGT
* *
26830940 AAATCATTTTCTAG-AAATCATTTTCCGGAAAA
1 AAAT-ATTTTC-AGTAAATCATCTTCCAGAAAA
26830972 CATTTTACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
33 4 0.14
34 22 0.79
35 2 0.07
ACGTcount: A:0.42, C:0.15, G:0.09, T:0.34
Consensus pattern (33 bp):
AAATATTTTCAGTAAATCATCTTCCAGAAAAGT
Found at i:26835317 original size:6 final size:6
Alignment explanation
Indices: 26835308--26835365 Score: 64
Period size: 6 Copynumber: 9.8 Consensus size: 6
26835298 ATAAAACAAC
** * *
26835308 TAAAAA TAAAAA TAATCA TAAACA T-AAAA TAAAAA TAAAAA TAAAAC
1 TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA TAAAAA
*
26835355 TAAAAA GAAAA
1 TAAAAA TAAAA
26835366 CAAATAAAAT
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
5 4 0.09
6 40 0.91
ACGTcount: A:0.76, C:0.05, G:0.02, T:0.17
Consensus pattern (6 bp):
TAAAAA
Done.