Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 85 of 163
Found at i:27639808 original size:40 final size:39
Alignment explanation
Indices: 27639747--27639876 Score: 116
Period size: 40 Copynumber: 3.2 Consensus size: 39
27639737 ATGTTTAGCA
* *
27639747 TTAGTTTGCGATTCGAGATAGCTTCGGCTATTTATGGCAC
1 TTAGTGTGCGATT-GAAATAGCTTCGGCTATTTATGGCAC
** *
27639787 TTAGTGTGCGATTGATAATAGCTTCAACTATATATATGTCAC
1 TTAGTGTGCGATTGA-AATAGCTTCGGCTAT-T-TATGGCAC
* * * * *
27639829 TTAGTGTGAGATACTGAGATAGCTTTGGCTATGTAAGGCAC
1 TTAGTGTGCGAT--TGAAATAGCTTCGGCTATTTATGGCAC
27639870 TTAGTGT
1 TTAGTGT
27639877 ACGGGATTAT
Statistics
Matches: 72, Mismatches: 13, Indels: 9
0.77 0.14 0.10
Matches are distributed among these distances:
39 2 0.03
40 24 0.33
41 14 0.19
42 18 0.25
43 11 0.15
44 3 0.04
ACGTcount: A:0.25, C:0.14, G:0.24, T:0.37
Consensus pattern (39 bp):
TTAGTGTGCGATTGAAATAGCTTCGGCTATTTATGGCAC
Found at i:27640577 original size:22 final size:22
Alignment explanation
Indices: 27640549--27640949 Score: 175
Period size: 22 Copynumber: 17.5 Consensus size: 22
27640539 TATGATGACA
27640549 AAATGCTGTTCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * **
27640571 AAATGCTGTTC-ATTTTTTAGCAT
1 AAATGCTGTTCGA-ATGTT-GGTT
* *
27640594 ACTAATGTTGTCCGAATGTT-GTT
1 A--AATGCTGTTCGAATGTTGGTT
*
27640617 CAAATGCTGTCCGAATGTTGGTT
1 -AAATGCTGTTCGAATGTTGGTT
** * **
27640640 AAATGCTGTTCGTTTTTTAGCAT
1 AAATGCTGTTCGAATGTT-GGTT
* *
27640663 ACTAATGATG-TCTGAATGTTGTTT
1 A--AATGCTGTTC-GAATGTTGGTT
*
27640687 AAATGATGTTCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* *
27640709 AAATGTTGTCCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * **
27640731 AAATGCTGTTC-ATTTTCTAGCAT
1 AAATGCTGTTCGAATGT-T-GGTT
*
27640754 ACTAATGCTGTCCGAATGTTGGTT
1 A--AATGCTGTTCGAATGTTGGTT
* * ** * **
27640778 AAATACTGTTTGTTTTTTTAGCAT
1 AAATGCTGTTCG-AATGTT-GGTT
*
27640802 ACTAATGCTGTCCGAATGTTAGG-T
1 A--AATGCTGTTCGAATGTT-GGTT
*
27640826 AAATGCTGTCCGAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* **
27640848 AAATGCTGTCCTTATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
* * **
27640870 AAATGCTGTTC-ATTTTTTAGCAT
1 AAATGCTGTTCGA-ATGTT-GGTT
* * *
27640893 ACTAATGTTGTCCGAATGTTGTTT
1 A--AATGCTGTTCGAATGTTGGTT
* *
27640917 AAATGATGTTCAAATGTTGGTT
1 AAATGCTGTTCGAATGTTGGTT
27640939 AAATGCTGTTC
1 AAATGCTGTTC
27640950 ATTTTTTAGC
Statistics
Matches: 281, Mismatches: 71, Indels: 54
0.69 0.17 0.13
Matches are distributed among these distances:
21 6 0.02
22 177 0.63
23 21 0.07
24 17 0.06
25 47 0.17
26 13 0.05
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (22 bp):
AAATGCTGTTCGAATGTTGGTT
Found at i:27640613 original size:11 final size:11
Alignment explanation
Indices: 27640597--27640636 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
27640587 TTAGCATACT
27640597 AATGTTGTCCG
1 AATGTTGTCCG
* *
27640608 AATGTTGTTCA
1 AATGTTGTCCG
*
27640619 AATGCTGTCCG
1 AATGTTGTCCG
27640630 AATGTTG
1 AATGTTG
27640637 GTTAAATGCT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.38
Consensus pattern (11 bp):
AATGTTGTCCG
Found at i:27640660 original size:69 final size:70
Alignment explanation
Indices: 27640549--27640856 Score: 324
Period size: 69 Copynumber: 4.4 Consensus size: 70
27640539 TATGATGACA
* * *
27640549 AAATGCTGTTCGAATGTTGGTTAAATGCTGTTCATTTTTTAGCATACTAATGTTGTCCGAATGTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGCTGTCCGAATGTT
27640614 -GTTC
66 AGTTC
* *
27640618 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGATGTCTGAATGTT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGCTGTCCGAATGTT
*
27640683 -GTTT
66 AGTTC
* * * * ** * ** * * *
27640687 AAATGATGTTCGAATGTTGGTTAAATGTTGTCCGAATGTT-GGTTA--AATGCTGTTC-ATTTTC
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGCTGTCCGAATGT-
*
27640748 TAGCATAC
65 TAG--TTC
* * *
27640756 TAATGCTGTCCGAATGTTGGTTAAATACTGTTTGTTTTTTTAGCATACTAATGCTGTCCGAATGT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCG-TTTTTTAGCATACTAATGCTGTCCGAATGT
*
27640821 TAGGT-
65 TAGTTC
27640826 AAATGCTGTCCGAATGTTGGTTAAATGCTGT
1 AAATGCTGTCCGAATGTTGGTTAAATGCTGT
27640857 CCTTATGTTG
Statistics
Matches: 190, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
65 3 0.02
66 8 0.04
67 1 0.01
68 3 0.02
69 125 0.66
70 32 0.17
71 3 0.02
73 12 0.06
74 3 0.02
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (70 bp):
AAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGCTGTCCGAATGTT
AGTTC
Found at i:27640719 original size:91 final size:91
Alignment explanation
Indices: 27640597--27640781 Score: 282
Period size: 91 Copynumber: 2.0 Consensus size: 91
27640587 TTAGCATACT
* * *
27640597 AATGTTGTCCGAATGTTGTTCAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCA
1 AATGATGTCCGAATGTTGTTCAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
* *
27640662 TACTAATGATGTCTGAATGTTGTTTA
66 TACTAATGATGTCCGAATGTTGGTTA
* *
27640688 AATGATGTTCGAATGTTGGTT-AAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGC
1 AATGATGTCCGAATGTT-GTTCAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGC
*
27640752 ATACTAATGCTGTCCGAATGTTGGTTA
65 ATACTAATGATGTCCGAATGTTGGTTA
27640779 AAT
1 AAT
27640782 ACTGTTTGTT
Statistics
Matches: 85, Mismatches: 8, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
91 82 0.96
92 3 0.04
ACGTcount: A:0.24, C:0.12, G:0.22, T:0.42
Consensus pattern (91 bp):
AATGATGTCCGAATGTTGTTCAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
TACTAATGATGTCCGAATGTTGGTTA
Found at i:27640868 original size:139 final size:138
Alignment explanation
Indices: 27640619--27640920 Score: 462
Period size: 139 Copynumber: 2.2 Consensus size: 138
27640609 ATGTTGTTCA
* *
27640619 AATGCTGTCCGAATGTTGGTTAAATGCTGTTCGTTTTTTAGCATACTAATGATGTCTGAATGTTG
1 AATGCTGTCCGAATGTTGGTTAAATACTGTTCGTTTTTTAGCATACTAATGATGTCCGAATGTTG
* * *
27640684 TTTAAATGATGTTCGAATGTTGGTTAAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT
66 TGTAAATGATGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT
27640749 AGCATACT
131 AGCATACT
* *
27640757 AATGCTGTCCGAATGTTGGTTAAATACTGTTTGTTTTTTTAGCATACTAATGCTGTCCGAATGTT
1 AATGCTGTCCGAATGTTGGTTAAATACTGTTCG-TTTTTTAGCATACTAATGATGTCCGAATGTT
* **
27640822 AG-GTAAATGCTGTCCGAATGTTGGTTAAATGCTGTCCTTATGTTGGTTAAATGCTGTTCATTTT
65 -GTGTAAATGATGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTT
*
27640886 TTAGCATACT
129 CTAGCATACT
* *
27640896 AATGTTGTCCGAATGTTGTTTAAAT
1 AATGCTGTCCGAATGTTGGTTAAAT
27640921 GATGTTCAAA
Statistics
Matches: 149, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
138 31 0.21
139 117 0.79
140 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.43
Consensus pattern (138 bp):
AATGCTGTCCGAATGTTGGTTAAATACTGTTCGTTTTTTAGCATACTAATGATGTCCGAATGTTG
TGTAAATGATGTCCGAATGTTGGTTAAATGCTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCT
AGCATACT
Found at i:27640920 original size:91 final size:92
Alignment explanation
Indices: 27640757--27640947 Score: 269
Period size: 91 Copynumber: 2.1 Consensus size: 92
27640747 CTAGCATACT
**
27640757 AATGCTGTCCGAATGTTGGTTAAATACTGTTTGTTTTTTTAGCATACTAATGCTGTCCGAATGTT
1 AATGCTGTCCGAATGTTGGTTAAATACTGTTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
* *
27640822 AGGTAAATGCTGTCCGAATGTTGGTTA
66 AGGTAAATGATGTCCAAATGTTGGTTA
** * *
27640849 AATGCTGTCCTTATGTTGGTTAAATGCTG-TTCATTTTTTAGCATACTAATGTTGTCCGAATGTT
1 AATGCTGTCCGAATGTTGGTTAAATACTGTTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
* *
27640913 -GTTTAAATGATGTTCAAATGTTGGTTA
66 AG-GTAAATGATGTCCAAATGTTGGTTA
27640940 AATGCTGT
1 AATGCTGT
27640948 TCATTTTTTA
Statistics
Matches: 88, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
90 1 0.01
91 61 0.69
92 26 0.30
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (92 bp):
AATGCTGTCCGAATGTTGGTTAAATACTGTTTCATTTTTTAGCATACTAATGCTGTCCGAATGTT
AGGTAAATGATGTCCAAATGTTGGTTA
Found at i:27640921 original size:69 final size:69
Alignment explanation
Indices: 27640688--27640994 Score: 289
Period size: 69 Copynumber: 4.4 Consensus size: 69
27640678 ATGTTGTTTA
* * * * *
27640688 AATGATGTTCGAATGTTGGTTAAATGTTGTCCGAATGTTGGTTAAATGCTGTTCATTTTCTAGCA
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCTAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
27640753 TACT
66 TACT
* ** ** * ** * * *
27640757 AATGCTGTCCGAATGTTGGTTAAATACTGTTTGTTTTTTTAGCATACTAATGCTGTCCGA-ATGT
1 AATGCTGTCCGAATGTTGGTTAAATGCTG-TCCTAATGTT-GGTTA--AATGCTGTTC-ATTTTT
*
27640821 TAG-GTA--
61 TAGCATACT
*
27640827 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCTTATGTTGGTTAAATGCTGTTCATTTTTTAGCA
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCTAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
27640892 TACT
66 TACT
* * * * *
27640896 AATGTTGTCCGAATGTTGTTTAAATGATGTTCAAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
1 AATGCTGTCCGAATGTTGGTTAAATGCTGTCCTAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
*
27640961 TATT
66 TACT
* * *
27640965 AATGCTGTCCAAATTGGTGCTTAAATGCTG
1 AATGCTGTCCGAA-TGTTGGTTAAATGCTG
27640995 ATCATTTTTG
Statistics
Matches: 188, Mismatches: 40, Indels: 19
0.76 0.16 0.08
Matches are distributed among these distances:
65 1 0.01
66 14 0.07
67 2 0.01
68 3 0.02
69 104 0.55
70 45 0.24
71 3 0.02
72 2 0.01
73 13 0.07
74 1 0.01
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (69 bp):
AATGCTGTCCGAATGTTGGTTAAATGCTGTCCTAATGTTGGTTAAATGCTGTTCATTTTTTAGCA
TACT
Found at i:27641452 original size:12 final size:12
Alignment explanation
Indices: 27641437--27641464 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
27641427 TTTTGATGTA
27641437 TAAATTGTTTTG
1 TAAATTGTTTTG
27641449 TAAATTGTTTTG
1 TAAATTGTTTTG
27641461 TAAA
1 TAAA
27641465 AGATGAAAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (12 bp):
TAAATTGTTTTG
Found at i:27642725 original size:58 final size:58
Alignment explanation
Indices: 27642663--27642841 Score: 142
Period size: 58 Copynumber: 3.1 Consensus size: 58
27642653 GTTTAAAATA
27642663 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
1 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
* * ** * * ** *
27642721 AACACTTAAAATATATGCAATAATAAACATGT-G-TTAA-TTTAAAATAAGT-TTA---AA-ATA
1 AACAC-T---AGATA-G-AATGAT-AGTATTTAGATGAATTTTGCAATAAATATTATGCAAGA-A
27642778 -
58 G
27642778 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
1 AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
27642836 AACACT
1 AACACT
27642842 TAAAATATAT
Statistics
Matches: 86, Mismatches: 18, Indels: 34
0.62 0.13 0.25
Matches are distributed among these distances:
50 4 0.05
51 6 0.07
52 4 0.05
53 13 0.15
54 3 0.03
56 1 0.01
57 9 0.10
58 15 0.17
59 1 0.01
61 3 0.03
62 13 0.15
63 4 0.05
64 6 0.07
65 4 0.05
ACGTcount: A:0.47, C:0.08, G:0.13, T:0.31
Consensus pattern (58 bp):
AACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATTATGCAAGAAG
Found at i:27642854 original size:115 final size:115
Alignment explanation
Indices: 27642645--27642997 Score: 638
Period size: 115 Copynumber: 3.1 Consensus size: 115
27642635 AAATAGGCTC
27642645 AAAATAGAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATAT
1 AAAATA-AGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATAT
*
27642710 TATGCAAGAAGAACACTTAAAATATATGCAATAATAAACATGTGTTAATTT
65 TATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
27642761 AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
1 AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
27642826 ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
66 ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
*
27642876 AAAAT--GTTTAAAATAAACACTAGATAAAATGATAGTATTTAGATGAATTTTGCAATAAATATT
1 AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
* * *
27642939 ATGCAGGAAGAACATTTAAAATATATGCAATAATGTACATGTGTTAATTT
66 ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
27642989 AAAATAAGT
1 AAAATAAGT
27642998 AATACATAAT
Statistics
Matches: 230, Mismatches: 5, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
113 109 0.47
115 115 0.50
116 6 0.03
ACGTcount: A:0.48, C:0.07, G:0.13, T:0.33
Consensus pattern (115 bp):
AAAATAAGTTTAAAATAAACACTAGATAGAATGATAGTATTTAGATGAATTTTGCAATAAATATT
ATGCAAGAAGAACACTTAAAATATATGCAATAATATACATGTGTTAATTT
Found at i:27644837 original size:100 final size:100
Alignment explanation
Indices: 27644661--27644847 Score: 250
Period size: 100 Copynumber: 1.9 Consensus size: 100
27644651 AACTTTTGGA
* * *
27644661 AAGTAAGATTCGCCATTGTGGCTTTAATCTTTTTAACTGCAATGTTGGGCAAACAAGATTCATCG
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGCAAACAAGATTCACCG
*
27644726 TCGTAGCTTTAATCTATTCCATTGCACCATCAAGG
66 TCATAGCTTTAATCTATTCCATTGCACCATCAAGG
* ** * *
27644761 AAGTAAGATTTGCTGTTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGGAAGCAAGATTCACCG
1 AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGCAAACAAGATTCACCG
* * *
27644826 AT-ATGGTTTTAATCTGTTCCAT
66 -TCATAGCTTTAATCTATTCCAT
27644848 GCATCGCCTA
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
100 73 0.99
101 1 0.01
ACGTcount: A:0.27, C:0.17, G:0.20, T:0.36
Consensus pattern (100 bp):
AAGTAAGATTCGCCATTGTAGCTTTAATCTTTTTAACTGCAATGTGGGGCAAACAAGATTCACCG
TCATAGCTTTAATCTATTCCATTGCACCATCAAGG
Found at i:27645027 original size:44 final size:43
Alignment explanation
Indices: 27644979--27645517 Score: 143
Period size: 44 Copynumber: 11.8 Consensus size: 43
27644969 CCTTTATTTT
*
27644979 AATCTGCTCCACTGTAATCTCAGTGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTCAG-GAGATAAGATTACTAGCTTC
* * * *
27645023 AATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTC-AGGAGATAAGATTACTAGCTTC
* * * * *
27645067 AATATGATGCGATCTACTCTACTGT-AGCTTCAGAGAGATAAGATCCT-TTA-TTTT
1 -A-AT-CT--G--CT-C-C-ACTGTAATC-TCAG-GAGATAAGAT--TACTAGCTTC
* *
27645121 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTC-AGGAGATAAGATTACTAGCTTC
* * * *
27645165 CATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCA-GGAGATAAGATTACTAGCTTC
* * * * *
27645209 AACCTACTCCATTGTAA-CACCAGGGAGATAAGATTCAC-AACTTCC
1 AATCTGCTCCACTGTAATC-TCA-GGAGATAAGATT-ACTAGCTT-C
* ** * ** ** * *
27645254 GAT-TGGGAACTCTTCGGTCTAATC-CA-CTG-TAATCTCACTAGCTTT
1 AATCT--G--CTC--CACTGTAATCTCAGGAGATAAGATTACTAGCTTC
* * *
27645299 AATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTC
1 AATCTGCTCCACTGTAATCTCA-GGAGATAAGATTACTAGCTTC
* * *
27645343 AATCTGATACGATCTACTCTACTGTAA-CTTCA-GAGATAAGATCCT-TTA-TTTT
1 AATC---T--G--CT-C-C-ACTGTAATC-TCAGGAGATAAGAT--TACTAGCTTC
* *
27645395 AATCCGCTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTC
1 AATCTGCTCCACTGTAATCTC-AGGAGATAAGATTACTAGCTTC
* * * *
27645439 CATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTC
1 AATCTGCTCCACTGTAATCTCA-GGAGATAAGATTACTAGCTTC
* * * *
27645483 AACCTACTCCATTGTAA-CACCAGGGAGATAAGATT
1 AATCTGCTCCACTGTAATC-TCA-GGAGATAAGATT
27645518 CACAACTTCC
Statistics
Matches: 361, Mismatches: 78, Indels: 112
0.66 0.14 0.20
Matches are distributed among these distances:
40 8 0.02
41 2 0.01
42 14 0.04
43 12 0.03
44 213 0.59
45 18 0.05
46 12 0.03
47 6 0.02
48 3 0.01
49 5 0.01
50 5 0.01
51 5 0.01
52 20 0.06
53 9 0.02
54 27 0.07
55 1 0.00
56 1 0.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (43 bp):
AATCTGCTCCACTGTAATCTCAGGAGATAAGATTACTAGCTTC
Found at i:27645102 original size:142 final size:141
Alignment explanation
Indices: 27644935--27645484 Score: 600
Period size: 142 Copynumber: 4.0 Consensus size: 141
27644925 AATCTAATGT
*
27644935 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCTGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
* * * *
27645000 -AGTGAGATAGGATTACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGC
66 AAG-GAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGC
27645064 TTCAATATGATGC
130 TTCAATATGAT-C
*
27645077 GATCTACTCTACTGTAGCTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
*
27645142 AAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCT
66 AAGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCT
27645207 TC---A--A-C
131 TCAATATGATC
* * ** * * ** * * **
27645212 ---CTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAA--CTCTTCGGT
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGA-T--C--CTT--TATT-TTAATCCGCTCCACT
* ** * *
27645272 CTAATC-C-A-CTG-TA--ATCTCACTAGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAG
58 GTAATCTCAAGGAGATAGGAT-T-ACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAG
* *
27645331 ATTTCTGGCTTCAATCTGATAC
121 ATTACTGGCTTCAATATGAT-C
27645353 GATCTACTCTACTGTAACTTC--AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
*
27645416 AAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCT
66 AAGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCT
27645481 TCAA
131 TCAA
27645485 CCTACTCCAT
Statistics
Matches: 332, Mismatches: 47, Indels: 60
0.76 0.11 0.14
Matches are distributed among these distances:
132 26 0.08
133 2 0.01
134 53 0.16
135 6 0.02
136 11 0.03
137 9 0.03
138 11 0.03
139 7 0.02
140 55 0.17
141 3 0.01
142 133 0.40
143 2 0.01
144 14 0.04
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (141 bp):
GATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
AAGGAGATAGGATTACTAGCTTCAATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCT
TCAATATGATC
Found at i:27645448 original size:274 final size:275
Alignment explanation
Indices: 27645014--27645564 Score: 1032
Period size: 274 Copynumber: 2.0 Consensus size: 275
27645004 AGATAGGATT
*
27645014 ACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTCAATATGATGCGA
1 ACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTCAATATGATACGA
*
27645079 TCTACTCTACTGTAGCTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAA
66 TCTACTCTACTGTAACTTCA-AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAA
27645144 GGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTC
130 GGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTC
27645209 AACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCT
195 AACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCT
27645274 AATCCACTGTAATCTC
260 AATCCACTGTAATCTC
* * * *
27645290 ACTAGCTTTAATCTGCTCCGCTGTAATCTCAGGGAGATAAGATTTCTGGCTTCAATCTGATACGA
1 ACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTCAATATGATACGA
27645355 TCTACTCTACTGTAACTTC-AGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAG
66 TCTACTCTACTGTAACTTCAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAG
27645419 GAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTCA
131 GAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTCA
27645484 ACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTA
196 ACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTA
27645549 ATCCACTGTAATCTC
261 ATCCACTGTAATCTC
27645564 A
1 A
27645565 GGGAGATAAG
Statistics
Matches: 269, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
274 191 0.71
276 78 0.29
ACGTcount: A:0.28, C:0.24, G:0.17, T:0.31
Consensus pattern (275 bp):
ACTAGCTTCAATCTGCTCCGCTATAATCTCAAGGAGATAAGATTTCTGGCTTCAATATGATACGA
TCTACTCTACTGTAACTTCAAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTCAAG
GAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAGATAAGATTACTGGCTTCA
ACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGATTGGGAACTCTTCGGTCTA
ATCCACTGTAATCTC
Found at i:27645795 original size:131 final size:131
Alignment explanation
Indices: 27645562--27646772 Score: 1160
Period size: 131 Copynumber: 9.2 Consensus size: 131
27645552 CACTGTAATC
* * * * * * * *
27645562 TCAGGGAGATAAGACCTGTGGCTTAAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTTGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * * *
27645624 CATCGATCTGCT-CAGCTATTGCCTAGGGAGACAAGTTCTGCAATTTCCAACCTATTCCACTGCT
66 CTTCGATCTGCTCCA-CTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCT
27645688 GG
130 GG
* * *
27645690 TCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCCGGGGAAGATAAGATTCGCCAT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * *
27645755 CTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATCTGCAATTTCCAACCTACTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
*
27645820 A
131 G
* * * * * *
27645821 CCAGGGACATAGGACGTATGGCTTAAATCTGTTTCCCTACTCCTAGAGAAGATAAGATTTGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * *
27645886 CTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCAATTCCACTG-TA
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCT-
**
27645950 ATC
130 -GG
* * * ** ** * *
27645953 TCAGGGAGATAGGA-TTACTAGCTTCCATCT-ACTCCGCTGTAAT-CTCAGGG-AGATAAGATT-
1 TCAGGGACATAGGACTT-GTGGCTTAAATCTGTTTCC-C--TACTCCT-GGGGAAGATAAGATTC
* * ** * * * * * * * *
27646013 ACTGGATTCAACCTGCTCCACT-GTAACATCAGGGAGATAAGAT-TCACAACTTCCGATTGGGAA
61 GCCGTCTTCGATCTGCTCCACTACT-GC-TTAGGGAGACAAGATCT-GCAATTTCC-------AA
* * **
27646076 CTCTTCGGTCTAATCCACCG-TAATC
116 -----C---CTATTCCACTGCT--GG
* * * * * * *
27646101 TCAGGGAGATAAGACTTGTGGCTTAAATCTGCTTCCTTAC-ACT--TGAAGATAAGATTTGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * * *
27646163 CATCGATCTGCT-CAGCTATTGCCTAGGGAGACAAGTTCTGCAATTTCCAACCTATTCCACTGCT
66 CTTCGATCTGCTCCA-CTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCT
27646227 GG
130 GG
* *
27646229 TCAGGGATATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCACCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * *
27646294 CTTTGATCTGCTCCGCTACTGCTTAGGGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
27646359 G
131 G
* *
27646360 TCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCAT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * * * * *
27646425 CTTTGATCTGCTCCACTACTACTTAGGGAGACAAGATTTTCAATTTCCAACCTACTCCACTGCTT
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
*
27646490 A
131 G
* * * * *
27646491 CCAGGGACATAGGACGTATGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCTCCAT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * * *
27646556 CTTCGATTTGCTCCGCTACTGCTTAGAGAGACAAGATCTGTAATTTCCAACCTATTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
27646621 G
131 G
*
27646622 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATGAGATTCGCCGT
1 TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
* * ** *
27646687 CTTCGATCTGCTCCACTACTGCTCAGGGAAACAAGATCTATAATTTCCAACCTACTCCACTGCTG
66 CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
*
27646752 A
131 G
* *
27646753 CCAGGGGCATAGGACTTGTG
1 TCAGGGACATAGGACTTGTG
27646773 ATTTCACCGA
Statistics
Matches: 894, Mismatches: 147, Indels: 81
0.80 0.13 0.07
Matches are distributed among these distances:
128 71 0.08
129 12 0.01
130 2 0.00
131 634 0.71
132 43 0.05
133 31 0.03
134 6 0.01
137 2 0.00
140 2 0.00
143 1 0.00
144 30 0.03
145 15 0.02
146 5 0.01
148 35 0.04
149 5 0.01
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.29
Consensus pattern (131 bp):
TCAGGGACATAGGACTTGTGGCTTAAATCTGTTTCCCTACTCCTGGGGAAGATAAGATTCGCCGT
CTTCGATCTGCTCCACTACTGCTTAGGGAGACAAGATCTGCAATTTCCAACCTATTCCACTGCTG
G
Found at i:27646000 original size:44 final size:44
Alignment explanation
Indices: 27645941--27646056 Score: 153
Period size: 44 Copynumber: 2.6 Consensus size: 44
27645931 TCCAACCAAT
* * * *
27645941 TCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTAC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGATTCAACCTAC
* * *
27645985 TCCGCTGTAATCTCAGGGAGATAAGATTACTGGATTCAACCTGC
1 TCCACTGTAATCTCAGGGAGATAAGATTACTAGATTCAACCTAC
27646029 TCCACTGTAA-CATCAGGGAGATAAGATT
1 TCCACTGTAATC-TCAGGGAGATAAGATT
27646057 CACAACTTCC
Statistics
Matches: 63, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
43 1 0.02
44 62 0.98
ACGTcount: A:0.29, C:0.22, G:0.21, T:0.28
Consensus pattern (44 bp):
TCCACTGTAATCTCAGGGAGATAAGATTACTAGATTCAACCTAC
Found at i:27646435 original size:539 final size:539
Alignment explanation
Indices: 27645401--27646486 Score: 1895
Period size: 539 Copynumber: 2.0 Consensus size: 539
27645391 TTTTAATCCG
27645401 CTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAG
* *
27645466 ATAAGATTACTGGCTTCAACCTACTCCATTGTAACACCAGGGAGATAAGATTCACAACTTCCGAT
66 ATAAGATTACTGGATTCAACCTACTCCACTGTAACACCAGGGAGATAAGATTCACAACTTCCGAT
*
27645531 TGGGAACTCTTCGGTCTAATCCACTGTAATCTCAGGGAGATAAGACCTGTGGCTTAAATCTGCTT
131 TGGGAACTCTTCGGTCTAATCCACCGTAATCTCAGGGAGATAAGACCTGTGGCTTAAATCTGCTT
27645596 CCTTACACTTGAAGATAAGATTTGCCGTCATCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTT
196 CCTTACACTTGAAGATAAGATTTGCCGTCATCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTT
27645661 CTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCC
261 CTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCC
*
27645726 CTACTCCCGGGGAAGATAAGATTCGCCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGA
326 CTACTCCCGGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGA
27645791 TCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACGTATGGCTTAAATCTGTTTC
391 TCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACGTATGGCTTAAATCTGTTTC
* * * *
27645856 CCTACTCCTAGAGAAGATAAGATTTGCCGTCTTCGATCTGCTCCGCTACTGCTTAGGGAGACAAG
456 CCTACTCCTAGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAG
27645921 ATCTGT-AATTTCCAACCAA
521 AT-TGTCAATTTCCAACCAA
* *
27645940 TTCCACTGTAATCTCAGGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAG
1 CTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAG
* *
27646005 ATAAGATTACTGGATTCAACCTGCTCCACTGTAACATCAGGGAGATAAGATTCACAACTTCCGAT
66 ATAAGATTACTGGATTCAACCTACTCCACTGTAACACCAGGGAGATAAGATTCACAACTTCCGAT
*
27646070 TGGGAACTCTTCGGTCTAATCCACCGTAATCTCAGGGAGATAAGACTTGTGGCTTAAATCTGCTT
131 TGGGAACTCTTCGGTCTAATCCACCGTAATCTCAGGGAGATAAGACCTGTGGCTTAAATCTGCTT
27646135 CCTTACACTTGAAGATAAGATTTGCCGTCATCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTT
196 CCTTACACTTGAAGATAAGATTTGCCGTCATCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTT
* *
27646200 CTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGATATAGGACTTGTGGCTTAAATCTGTTTCC
261 CTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCC
* * * *
27646265 CTACTCCTGGGGAAGATAAGATTCACCGTCTTTGATCTGCTCCGCTACTGCTTAGGGAGACAAGA
326 CTACTCCCGGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGA
* * ** *
27646330 TCTGTAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTGTTTC
391 TCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACGTATGGCTTAAATCTGTTTC
* * *
27646395 CCTACTCCTGGGGAAGATAAGATTCGCCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAG
456 CCTACTCCTAGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAG
* *
27646460 ATTTTCAATTTCCAACCTA
521 ATTGTCAATTTCCAACCAA
27646479 CTCCACTG
1 CTCCACTG
27646487 CTTACCAGGG
Statistics
Matches: 516, Mismatches: 30, Indels: 2
0.94 0.05 0.00
Matches are distributed among these distances:
538 2 0.00
539 514 1.00
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (539 bp):
CTCCACTGTAATCTCAAGGAGATAGGATTACTAGCTTCCATCTACTCCGCTGTAATCTCAGGGAG
ATAAGATTACTGGATTCAACCTACTCCACTGTAACACCAGGGAGATAAGATTCACAACTTCCGAT
TGGGAACTCTTCGGTCTAATCCACCGTAATCTCAGGGAGATAAGACCTGTGGCTTAAATCTGCTT
CCTTACACTTGAAGATAAGATTTGCCGTCATCGATCTGCTCAGCTATTGCCTAGGGAGACAAGTT
CTGCAATTTCCAACCTATTCCACTGCTGGTCAGGGACATAGGACGTGTGGCTTAAATCTGTTTCC
CTACTCCCGGGGAAGATAAGATTCACCATCTTTGATCTGCTCCACTACTACTTAGGGAGACAAGA
TCTGCAATTTCCAACCTACTCCACTGCTGACCAGGGACATAGGACGTATGGCTTAAATCTGTTTC
CCTACTCCTAGAGAAGATAAGATTCGCCATCTTCGATCTGCTCCACTACTACTTAGGGAGACAAG
ATTGTCAATTTCCAACCAA
Found at i:27652918 original size:21 final size:22
Alignment explanation
Indices: 27652868--27652918 Score: 54
Period size: 21 Copynumber: 2.4 Consensus size: 22
27652858 AAATATACGC
*
27652868 TAACGAATACAAACAATCCATAG
1 TAAC-AATACAAACAATACATAG
27652891 -ATA-AATACAAACAA-ACATAG
1 TA-ACAATACAAACAATACATAG
27652911 TAACAATA
1 TAACAATA
27652919 GCCTCAATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 8
0.73 0.03 0.24
Matches are distributed among these distances:
20 6 0.25
21 16 0.67
22 1 0.04
23 1 0.04
ACGTcount: A:0.59, C:0.18, G:0.06, T:0.18
Consensus pattern (22 bp):
TAACAATACAAACAATACATAG
Found at i:27653102 original size:2 final size:2
Alignment explanation
Indices: 27653095--27653124 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
27653085 TTTTAAAGAA
27653095 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27653125 GTCTTGTTGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27653452 original size:20 final size:21
Alignment explanation
Indices: 27653420--27653459 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
27653410 GTAATTGAAT
*
27653420 GAATAATAATACATGATAAAG
1 GAATAATAATACATAATAAAG
27653441 GAATAA-AATACATAATAAA
1 GAATAATAATACATAATAAA
27653460 ATAAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.62, C:0.05, G:0.10, T:0.23
Consensus pattern (21 bp):
GAATAATAATACATAATAAAG
Found at i:27655361 original size:87 final size:87
Alignment explanation
Indices: 27655216--27655685 Score: 694
Period size: 87 Copynumber: 5.4 Consensus size: 87
27655206 CTTGTAATCT
* *
27655216 TCGATCTGCTTCACTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTACAAC
1 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
* * *
27655281 CGATGGAGGTAAGGCTTTGTTT
66 CGATGGAGGCAAGGCTTCGTTC
* *
27655303 TCGATCTAG-TTCGCTGTTAATGCAGGAAGGCAAGATCTGTTATCTTTAACCAGCTCCACTGCAA
1 TCGATCT-GCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAA
*
27655367 CCGATGGAGGCAAGGCTTTGTTC
65 CCGATGGAGGCAAGGCTTCGTTC
* * * * * * *
27655390 TTGATCTGCTTCACTGTTAATGTAGGAAGGCAAGATTTTCTATCTTTAACCAGCTCCACTACAAC
1 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
27655455 CGATGGAGGCAAGGCTTCGTTC
66 CGATGGAGGCAAGGCTTCGTTC
* * *
27655477 TCGATTTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTACAATCTTTAACCAGCTCCACTGCAAC
1 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
*
27655542 TGATGGAGGCAAGGCTTCGTTC
66 CGATGGAGGCAAGGCTTCGTTC
*
27655564 TCGATCTGCTTCGCTGTTAACACAGGAAGGCAAGATCTGCT-TCTTTAACCAGCTCCACTGCAAC
1 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
*
27655628 CGATGGAGGCAA-GATCTCGTTC
66 CGATGGAGGCAAGGCT-TCGTTC
* *
27655650 ACGATCTACTTCGCTGTTAACGCAGGAAGGCAAGAT
1 TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGAT
27655686 ATGTTTCTTT
Statistics
Matches: 347, Mismatches: 33, Indels: 7
0.90 0.09 0.02
Matches are distributed among these distances:
85 2 0.01
86 74 0.21
87 270 0.78
88 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.23, T:0.28
Consensus pattern (87 bp):
TCGATCTGCTTCGCTGTTAACGCAGGAAGGCAAGATCTGCTATCTTTAACCAGCTCCACTGCAAC
CGATGGAGGCAAGGCTTCGTTC
Found at i:27656934 original size:6 final size:7
Alignment explanation
Indices: 27656884--27656933 Score: 50
Period size: 7 Copynumber: 7.1 Consensus size: 7
27656874 CATTAGCCTC
27656884 TTCATTT
1 TTCATTT
*
27656891 TT-ACTCT
1 TTCA-TTT
27656898 TTCATTT
1 TTCATTT
27656905 TTCATTTT
1 TTCA-TTT
27656913 TTCA-TT
1 TTCATTT
*
27656919 CTCATTT
1 TTCATTT
27656926 TTCATTT
1 TTCATTT
27656933 T
1 T
27656934 CTCTTTTTTT
Statistics
Matches: 35, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
6 6 0.17
7 21 0.60
8 8 0.23
ACGTcount: A:0.14, C:0.18, G:0.00, T:0.68
Consensus pattern (7 bp):
TTCATTT
Found at i:27657404 original size:14 final size:14
Alignment explanation
Indices: 27657387--27657422 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
27657377 TTTTTCTTCT
27657387 TTTTGTTTTTTTGA
1 TTTTGTTTTTTTGA
*
27657401 TTTTGATTTTTTGA
1 TTTTGTTTTTTTGA
27657415 TTTT-TTTT
1 TTTTGTTTT
27657423 GACTTTGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
13 3 0.15
14 17 0.85
ACGTcount: A:0.08, C:0.00, G:0.11, T:0.81
Consensus pattern (14 bp):
TTTTGTTTTTTTGA
Found at i:27669260 original size:112 final size:116
Alignment explanation
Indices: 27669139--27669383 Score: 259
Period size: 122 Copynumber: 2.1 Consensus size: 116
27669129 CCTGGTTCGA
* * *
27669139 TCTATCGATAC-AA-C-C-AGAGTAATACTGA-TACCTTGAGGACTTCTATCGAAACAAGTCAAA
1 TCTATCGATACAAACCACTAGAGTAATAC-CATTACCTTGAGGACTTCTACCAAAACAAGTCAAA
* * * *
27669199 ACAGTGGCCAAAGTTCAACC-CCTCCTGCACTTCAACCGATACTCTACTGGGT
65 ACAGTAGCCAAAGTTCAACCTCC-CCTGCACTTCAACCAATACTCTAATAGGT
**
27669251 TCTATCGATACCAGTTGAAACCACTAGAGTTTTACCATTACCTTGAGGACTTCTACCAAAACAAG
1 TCTATCGATA-C-----AAACCACTAGAGTAATACCATTACCTTGAGGACTTCTACCAAAACAAG
* * *
27669316 TCAAAATAGTAGCCAAAGTTCATCCTCCCCTGCACTTCTACCAATACTCTAATAGGT
60 TCAAAACAGTAGCCAAAGTTCAACCTCCCCTGCACTTCAACCAATACTCTAATAGGT
*
27669373 TCTATTGATAC
1 TCTATCGATAC
27669384 CAAATGAAAC
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
112 10 0.09
113 1 0.01
119 2 0.02
120 1 0.01
121 3 0.03
122 89 0.82
123 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (116 bp):
TCTATCGATACAAACCACTAGAGTAATACCATTACCTTGAGGACTTCTACCAAAACAAGTCAAAA
CAGTAGCCAAAGTTCAACCTCCCCTGCACTTCAACCAATACTCTAATAGGT
Found at i:27669374 original size:122 final size:122
Alignment explanation
Indices: 27669167--27669403 Score: 334
Period size: 122 Copynumber: 1.9 Consensus size: 122
27669157 GTAATACTGA
* * *
27669167 TACCTTGAGGACTTCTATCGAAACAAGTCAAAACAGTGGCCAAAGTTCAACCCCTCCTGCACTTC
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACCCCTCCTGCACTTC
* * * **
27669232 AACCGATACTCTACTGGGTTCTATCGATACCAGTTGAAACCACT-AGAGTTTTACCAT
66 AACCAATACTCTAATAGGTTCTATCGATACCAAATGAAACC-CTCAGAGTTTTACCAT
* *
27669289 TACCTTGAGGACTTCTACCAAAACAAGTCAAAATAGTAGCCAAAGTTCATCCTCC-CCTGCACTT
1 TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACC-CCTCCTGCACTT
* *
27669353 CTACCAATACTCTAATAGGTTCTATTGATACCAAATGAAACCCTCAGAGTT
65 CAACCAATACTCTAATAGGTTCTATCGATACCAAATGAAACCCTCAGAGTT
27669404 CTACTGATAC
Statistics
Matches: 101, Mismatches: 12, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
121 2 0.02
122 97 0.96
123 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (122 bp):
TACCTTGAGGACTTCTACCAAAACAAGTCAAAACAGTAGCCAAAGTTCAACCCCTCCTGCACTTC
AACCAATACTCTAATAGGTTCTATCGATACCAAATGAAACCCTCAGAGTTTTACCAT
Found at i:27670869 original size:86 final size:86
Alignment explanation
Indices: 27670721--27670890 Score: 295
Period size: 86 Copynumber: 2.0 Consensus size: 86
27670711 AGTGTTCCAA
* *
27670721 ACGAAGGAAATCTGCAAATAGCATCAGGTGTGTAAGCACCCCACTGTAACTGTAGAAAGGAAAAA
1 ACGAAGGAAATCTGCAAATAGCATCAGGTGTATAAGCAACCCACTGTAACTGTAGAAAGGAAAAA
27670786 GTCGAAAAGCTGAAATACGGC
66 GTCGAAAAGCTGAAATACGGC
* *
27670807 ACGAAGGGAATCTGCAAATAGCATCAGGTGTATAAGCAACCCACTGTAACTGTAGAACGGAAAAA
1 ACGAAGGAAATCTGCAAATAGCATCAGGTGTATAAGCAACCCACTGTAACTGTAGAAAGGAAAAA
*
27670872 GTCGAAAAGTTGAAATACG
66 GTCGAAAAGCTGAAATACG
27670891 ACGTTGAGAC
Statistics
Matches: 79, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.41, C:0.18, G:0.24, T:0.17
Consensus pattern (86 bp):
ACGAAGGAAATCTGCAAATAGCATCAGGTGTATAAGCAACCCACTGTAACTGTAGAAAGGAAAAA
GTCGAAAAGCTGAAATACGGC
Found at i:27671254 original size:26 final size:27
Alignment explanation
Indices: 27671165--27671276 Score: 136
Period size: 27 Copynumber: 4.2 Consensus size: 27
27671155 TTACACTGTT
27671165 ATGACCGAAATACCCCCATAGGGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
27671192 ATGATCGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
27671219 ATGATCGAAATACCCCCACA-AGTAGA
1 ATGACCGAAATACCCCCATAGGGTAGA
* * *
27671245 ATGACCGAAATACCCTCATAGGATAAA
1 ATGACCGAAATACCCCCATAGGGTAGA
27671272 ATGAC
1 ATGAC
27671277 TGTTATATCC
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
26 21 0.30
27 50 0.70
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (27 bp):
ATGACCGAAATACCCCCATAGGGTAGA
Found at i:27671254 original size:53 final size:54
Alignment explanation
Indices: 27671165--27671276 Score: 156
Period size: 53 Copynumber: 2.1 Consensus size: 54
27671155 TTACACTGTT
* * * *
27671165 ATGACCGAAATACCCCCATAGGGTAGAATGATCGAAATACCC-CTATAGGGTAAA
1 ATGACCGAAATACCCCCACAGAGTAGAATGACCGAAATACCCTC-ATAGGATAAA
*
27671219 ATGATCGAAATACCCCCACA-AGTAGAATGACCGAAATACCCTCATAGGATAAA
1 ATGACCGAAATACCCCCACAGAGTAGAATGACCGAAATACCCTCATAGGATAAA
27671272 ATGAC
1 ATGAC
27671277 TGTTATATCC
Statistics
Matches: 51, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
53 32 0.63
54 19 0.37
ACGTcount: A:0.41, C:0.23, G:0.18, T:0.18
Consensus pattern (54 bp):
ATGACCGAAATACCCCCACAGAGTAGAATGACCGAAATACCCTCATAGGATAAA
Found at i:27673256 original size:105 final size:105
Alignment explanation
Indices: 27673068--27673259 Score: 276
Period size: 105 Copynumber: 1.8 Consensus size: 105
27673058 AGATTGTTAC
* * *
27673068 GATCTTAAATCAACTAACCTTTGTAAAATCAACTATGAACGTAGCTCATCAAGTTGTTTAAGAGT
1 GATCTTAAATCAACAAACCTTTGTAAAATCAACCATGAACGTAGCTCATCAAGCTGTTTAAGAGT
*
27673133 TGCGATCTTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
66 TGCGATATTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
* * * * * *
27673173 GATCTTAAATCAACAAACCTTTGTAAAATTAGCCGTGAACGTAGGTCATCATGCTGTTTAGGAGT
1 GATCTTAAATCAACAAACCTTTGTAAAATCAACCATGAACGTAGCTCATCAAGCTGTTTAAGAGT
**
27673238 TGCGATATTAAATTAGCTAACT
66 TGCGATATTAAACCAGCTAACT
27673260 CACTTCAATC
Statistics
Matches: 75, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
105 75 1.00
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.32
Consensus pattern (105 bp):
GATCTTAAATCAACAAACCTTTGTAAAATCAACCATGAACGTAGCTCATCAAGCTGTTTAAGAGT
TGCGATATTAAACCAGCTAACTTAAAGATGAGTAGGTTGT
Found at i:27674836 original size:8 final size:8
Alignment explanation
Indices: 27674823--27674856 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
27674813 AAATTTGATT
27674823 TATATACA
1 TATATACA
*
27674831 TATATATA
1 TATATACA
27674839 TATATACA
1 TATATACA
27674847 TATATTACA
1 TATA-TACA
27674856 T
1 T
27674857 GGTAAATATT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 18 0.78
9 5 0.22
ACGTcount: A:0.47, C:0.09, G:0.00, T:0.44
Consensus pattern (8 bp):
TATATACA
Found at i:27675386 original size:2 final size:2
Alignment explanation
Indices: 27675379--27675403 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
27675369 AGGGCATGCT
27675379 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
27675404 GTGAGATTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:27682357 original size:20 final size:20
Alignment explanation
Indices: 27682332--27682375 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
27682322 TTTTTCGTTT
*
27682332 AAAAAAGTAAAAAAGGAAAA
1 AAAAAAGTAAAAAAGCAAAA
*
27682352 AAAAAAGTTAAAAAGCAAAA
1 AAAAAAGTAAAAAAGCAAAA
27682372 AAAA
1 AAAA
27682376 TTTTATAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.80, C:0.02, G:0.11, T:0.07
Consensus pattern (20 bp):
AAAAAAGTAAAAAAGCAAAA
Found at i:27683398 original size:35 final size:34
Alignment explanation
Indices: 27683351--27683426 Score: 93
Period size: 35 Copynumber: 2.2 Consensus size: 34
27683341 CCAAAATAAC
*
27683351 AATTTTTTTTTATAAA-TTTTCAAT-ATTTTCAAT
1 AATTTTTTTTTATAAACTTCT-AATAATTTTCAAT
*
27683384 AACTTTTTATTTTATAAACTTCTAATAATTTTTAAT
1 AA-TTTTT-TTTTATAAACTTCTAATAATTTTCAAT
27683420 AATTTTT
1 AATTTTT
27683427 GTATTCTTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
33 2 0.05
34 5 0.14
35 17 0.46
36 13 0.35
ACGTcount: A:0.34, C:0.07, G:0.00, T:0.59
Consensus pattern (34 bp):
AATTTTTTTTTATAAACTTCTAATAATTTTCAAT
Found at i:27684695 original size:151 final size:152
Alignment explanation
Indices: 27684515--27684817 Score: 599
Period size: 151 Copynumber: 2.0 Consensus size: 152
27684505 GATTTAATAT
27684515 ATTAATAATAATTTATTTTATATAAGTTTTAACAGAATGTATTATAATTTTTAAATTATTTTTTT
1 ATTAATAATAATTTATTTTATATAAGTTTTAACAGAATGTATTATAATTTTTAAATTATTTTTTT
27684580 ACTATATAAATCAAAACTCGATCATTAAGTATAGATTTGTCGATGGGCAGGGCTAGGCTAAGGCC
66 ACTATATAAATCAAAACTCGATCATTAAGTATAGATTTGTCGATGGGCAGGGCTAGGCTAAGGCC
27684645 TGGTTTCAAAAAAAAAATCATG
131 TGGTTTCAAAAAAAAAATCATG
27684667 ATTAATAAT-ATTTATTTTATATAAGTTTTAACAGAATGTATTATAATTTTTAAATTATTTTTTT
1 ATTAATAATAATTTATTTTATATAAGTTTTAACAGAATGTATTATAATTTTTAAATTATTTTTTT
27684731 ACTATATAAATCAAAACTCGATCATTAAGTATAGATTTGTCGATGGGCAGGGCTAGGCTAAGGCC
66 ACTATATAAATCAAAACTCGATCATTAAGTATAGATTTGTCGATGGGCAGGGCTAGGCTAAGGCC
27684796 TGGTTTCAAAAAAAAAATCATG
131 TGGTTTCAAAAAAAAAATCATG
27684818 CTTGGAATGT
Statistics
Matches: 151, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
151 142 0.94
152 9 0.06
ACGTcount: A:0.38, C:0.09, G:0.14, T:0.39
Consensus pattern (152 bp):
ATTAATAATAATTTATTTTATATAAGTTTTAACAGAATGTATTATAATTTTTAAATTATTTTTTT
ACTATATAAATCAAAACTCGATCATTAAGTATAGATTTGTCGATGGGCAGGGCTAGGCTAAGGCC
TGGTTTCAAAAAAAAAATCATG
Found at i:27686678 original size:40 final size:39
Alignment explanation
Indices: 27686596--27686689 Score: 111
Period size: 40 Copynumber: 2.4 Consensus size: 39
27686586 TTTGAACAAC
*
27686596 AAACGCCGCTAAAAATCGAGCATTAGCTGCGCTTAGCATA
1 AAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTAG-ATA
* * *
27686636 AAACGCCGCTAAAGATCTAGCATTAGCGGCGCTCTTTG-TA
1 AAACGCCGCTAAAAATCGAGCATTAGCGGCG--CTTAGATA
27686676 AAACGCCGC-AAAAA
1 AAACGCCGCTAAAAA
27686690 GTTGAACCTG
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
39 4 0.09
40 39 0.83
42 4 0.09
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.19
Consensus pattern (39 bp):
AAACGCCGCTAAAAATCGAGCATTAGCGGCGCTTAGATA
Found at i:27687053 original size:114 final size:114
Alignment explanation
Indices: 27686868--27687374 Score: 746
Period size: 114 Copynumber: 4.4 Consensus size: 114
27686858 GTTTATTTGT
* * * ** * *
27686868 AAGCGCCGCAGAAA-ATGTTAAACAAAACGCAGCGTACGATCTTGAGGTATACTAGAATTAGTGG
1 AAGCGCTGCA-AAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGG
* * * * * *
27686932 CGATTATGCAACAATGCCGCTAAAGTACAGTATTAGCAGCGCATTATAAA
65 CGATTATGAAAAAACGCCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
27686982 AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
1 AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
* * *
27687047 GCTTATGAAACAACGCCGCTAAAGCACAGCATTAGCGGCGCCTTATAAA
66 GATTATGAAAAAACGCCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
*
27687096 AAGCGCTGCAAAATATCTAAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
1 AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
* * * *
27687161 GCTTATGAAAAAACACCGCTAAAGCACAGAATTAGTGGCGCATTATAAA
66 GATTATGAAAAAACGCCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
* *
27687210 AAGCGCTGCAAAATATCTTAAGCAAAACGCAACGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
1 AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
* * *
27687275 GATTATGAAAAAACGTCACTAAAGCACAGCATTAGCGGCGCCTTATAAA
66 GATTATGAAAAAACGCCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
* *
27687324 AAACGCCGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA
1 AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATA
27687375 GAGCCAATAG
Statistics
Matches: 358, Mismatches: 34, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
113 3 0.01
114 355 0.99
ACGTcount: A:0.36, C:0.19, G:0.21, T:0.23
Consensus pattern (114 bp):
AAGCGCTGCAAAATATCTTAACCAAAACGCAGCGTTTGGTCTTGAGGTATATTAGAATTAGTGGC
GATTATGAAAAAACGCCGCTAAAGCACAGCATTAGCGGCGCATTATAAA
Found at i:27688102 original size:22 final size:21
Alignment explanation
Indices: 27688074--27688116 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 21
27688064 TGGTTGTTGT
27688074 TGTTTATGGTTTACGGGTTTAA
1 TGTTTATGGTTTA-GGGTTTAA
27688096 TGTTTATGGTTTAGGGTTTAA
1 TGTTTATGGTTTAGGGTTTAA
27688117 GATTTACAGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 8 0.38
22 13 0.62
ACGTcount: A:0.19, C:0.02, G:0.28, T:0.51
Consensus pattern (21 bp):
TGTTTATGGTTTAGGGTTTAA
Found at i:27688207 original size:7 final size:7
Alignment explanation
Indices: 27688195--27688264 Score: 77
Period size: 7 Copynumber: 10.0 Consensus size: 7
27688185 GTTAATTGAC
27688195 GGGTTTA
1 GGGTTTA
27688202 GGGTTTA
1 GGGTTTA
*
27688209 AGGTTTA
1 GGGTTTA
* *
27688216 TGATTTA
1 GGGTTTA
27688223 GGGTTTA
1 GGGTTTA
27688230 GGGTTTA
1 GGGTTTA
* *
27688237 AGATTTA
1 GGGTTTA
27688244 GGGTTTA
1 GGGTTTA
**
27688251 TAGTTTA
1 GGGTTTA
27688258 GGGTTTA
1 GGGTTTA
27688265 AGATTTACGG
Statistics
Matches: 50, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
7 50 1.00
ACGTcount: A:0.21, C:0.00, G:0.33, T:0.46
Consensus pattern (7 bp):
GGGTTTA
Found at i:27688215 original size:14 final size:14
Alignment explanation
Indices: 27688196--27688280 Score: 93
Period size: 14 Copynumber: 6.1 Consensus size: 14
27688186 TTAATTGACG
27688196 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
* * *
27688210 GGTTTATGATTTAG
1 GGTTTAGGGTTTAA
27688224 GGTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
*
27688238 GATTTAGGGTTTATA
1 GGTTTAGGGTTTA-A
27688253 -GTTTAGGGTTTAA
1 GGTTTAGGGTTTAA
* *
27688266 GATTTACGG-TTAA
1 GGTTTAGGGTTTAA
27688279 GG
1 GG
27688281 CTTATAGTAT
Statistics
Matches: 58, Mismatches: 11, Indels: 5
0.78 0.15 0.07
Matches are distributed among these distances:
13 6 0.10
14 51 0.88
15 1 0.02
ACGTcount: A:0.24, C:0.01, G:0.32, T:0.44
Consensus pattern (14 bp):
GGTTTAGGGTTTAA
Found at i:27688222 original size:21 final size:21
Alignment explanation
Indices: 27688198--27688250 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
27688188 AATTGACGGG
*
27688198 TTTAGGGTTTAAGGTTTATGA
1 TTTAGGGTTTAAGGTTTAAGA
*
27688219 TTTAGGGTTTAGGGTTTAAGA
1 TTTAGGGTTTAAGGTTTAAGA
27688240 TTTAGGGTTTA
1 TTTAGGGTTTA
27688251 TAGTTTAGGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.23, C:0.00, G:0.30, T:0.47
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTTTAAGA
Found at i:27688235 original size:28 final size:28
Alignment explanation
Indices: 27688195--27688271 Score: 109
Period size: 28 Copynumber: 2.8 Consensus size: 28
27688185 GTTAATTGAC
* *
27688195 GGGTTTAGGGTTTAAGGTTTATGATTTA
1 GGGTTTAGGGTTTAAGATTTAGGATTTA
*
27688223 GGGTTTAGGGTTTAAGATTTAGGGTTTA
1 GGGTTTAGGGTTTAAGATTTAGGATTTA
**
27688251 TAGTTTAGGGTTTAAGATTTA
1 GGGTTTAGGGTTTAAGATTTA
27688272 CGGTTAAGGC
Statistics
Matches: 44, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.23, C:0.00, G:0.31, T:0.45
Consensus pattern (28 bp):
GGGTTTAGGGTTTAAGATTTAGGATTTA
Found at i:27688271 original size:7 final size:7
Alignment explanation
Indices: 27688196--27688280 Score: 57
Period size: 7 Copynumber: 12.3 Consensus size: 7
27688186 TTAATTGACG
*
27688196 GGTTTAG
1 GGTTTAA
27688203 GGTTTAA
1 GGTTTAA
*
27688210 GGTTTAT
1 GGTTTAA
* *
27688217 GATTTAG
1 GGTTTAA
*
27688224 GGTTTAG
1 GGTTTAA
27688231 GGTTTAA
1 GGTTTAA
* *
27688238 GATTTAG
1 GGTTTAA
27688245 GGTTTATA
1 GGTTTA-A
*
27688253 -GTTTAG
1 GGTTTAA
27688259 GGTTTAA
1 GGTTTAA
* *
27688266 GATTTAC
1 GGTTTAA
27688273 GG-TTAA
1 GGTTTAA
27688279 GG
1 GG
27688281 CTTATAGTAT
Statistics
Matches: 60, Mismatches: 16, Indels: 5
0.74 0.20 0.06
Matches are distributed among these distances:
6 5 0.08
7 55 0.92
ACGTcount: A:0.24, C:0.01, G:0.32, T:0.44
Consensus pattern (7 bp):
GGTTTAA
Found at i:27688677 original size:21 final size:20
Alignment explanation
Indices: 27688637--27688674 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
27688627 AATATATTGA
*
27688637 TGTATTTATTTTTTAAAATG
1 TGTAATTATTTTTTAAAATG
27688657 TGTAATTATTTTTTAAAA
1 TGTAATTATTTTTTAAAA
27688675 ATGCATTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.00, G:0.08, T:0.58
Consensus pattern (20 bp):
TGTAATTATTTTTTAAAATG
Found at i:27689227 original size:24 final size:24
Alignment explanation
Indices: 27689199--27689256 Score: 82
Period size: 24 Copynumber: 2.5 Consensus size: 24
27689189 AAGCTCATTT
27689199 TTCCCCTCAAAATTTTCCCCAAAA
1 TTCCCCTCAAAATTTTCCCCAAAA
* * *
27689223 TTCCCCTCTAATTTTTCCCTAAAA
1 TTCCCCTCAAAATTTTCCCCAAAA
27689247 TTCCCC-CAAA
1 TTCCCCTCAAA
27689257 TCTAGAACCC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
23 3 0.10
24 27 0.90
ACGTcount: A:0.29, C:0.38, G:0.00, T:0.33
Consensus pattern (24 bp):
TTCCCCTCAAAATTTTCCCCAAAA
Found at i:27690004 original size:39 final size:40
Alignment explanation
Indices: 27689932--27690034 Score: 138
Period size: 39 Copynumber: 2.5 Consensus size: 40
27689922 ACCAAAAATT
27689932 TATTTTAAAAATTAAAACAAAAATTAAAAAAAGTATTTTAAAAA
1 TATTTT-AAAATT--AA-AAAAATTAAAAAAAGTATTTTAAAAA
27689976 TATTTTAAAATTAAAAAAATT-AAAAAAGTATTTTAAAAA
1 TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
*
27690015 -AATTTAAAATTTAAAAAAAT
1 TATTTTAAAA-TTAAAAAAAT
27690035 NNNNNNNNNN
Statistics
Matches: 57, Mismatches: 1, Indels: 7
0.88 0.02 0.11
Matches are distributed among these distances:
38 8 0.14
39 28 0.49
40 7 0.12
41 2 0.04
43 6 0.11
44 6 0.11
ACGTcount: A:0.63, C:0.01, G:0.02, T:0.34
Consensus pattern (40 bp):
TATTTTAAAATTAAAAAAATTAAAAAAAGTATTTTAAAAA
Found at i:27690996 original size:28 final size:29
Alignment explanation
Indices: 27690964--27691039 Score: 84
Period size: 28 Copynumber: 2.6 Consensus size: 29
27690954 TCAATCATAT
* *
27690964 CATAACTTATAT-ATAAATTTACATAAT-A
1 CATAACTTACATAAT-AACTTACATAATAA
27690992 CATAACTTACATAATAACTTACATAATAA
1 CATAACTTACATAATAACTTACATAATAA
27691021 CATAATAACTTACATAATA
1 C---ATAACTTACATAATA
27691040 TATAGCCTAC
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
28 22 0.54
29 4 0.10
32 15 0.37
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.34
Consensus pattern (29 bp):
CATAACTTACATAATAACTTACATAATAA
Found at i:27691004 original size:9 final size:9
Alignment explanation
Indices: 27690982--27691317 Score: 157
Period size: 9 Copynumber: 39.1 Consensus size: 9
27690972 ATATATAAAT
27690982 TTACATAA-
1 TTACATAAC
27690990 -TACATAAC
1 TTACATAAC
27690998 TTACATAA-
1 TTACATAAC
* *
27691006 TAAC-TTAC
1 TTACATAAC
*
27691014 ATA-ATAAC
1 TTACATAAC
*
27691022 ATA-ATAAC
1 TTACATAAC
27691030 TTACATAA-
1 TTACATAAC
* *
27691038 -TATATAGC
1 TTACATAAC
* *
27691046 CTACATAAA
1 TTACATAAC
*
27691055 TTGCATAAC
1 TTACATAAC
*
27691064 TCACATAA-
1 TTACATAAC
*
27691072 -TACACAAC
1 TTACATAAC
27691080 TTACATAAC
1 TTACATAAC
*
27691089 TTAAATAAC
1 TTACATAAC
*
27691098 TTATATAA-
1 TTACATAAC
27691106 -TACATAAC
1 TTACATAAC
*
27691114 TTACATTAATAT
1 TTACA-T-A-AC
27691126 TATACATAAC
1 T-TACATAAC
27691136 TTACATAAC
1 TTACATAAC
27691145 TTA-ATTAA-
1 TTACA-TAAC
*
27691153 TTA-AT-AT
1 TTACATAAC
27691160 TATACATAAC
1 T-TACATAAC
27691170 TTACATAAC
1 TTACATAAC
27691179 TTAC--AAC
1 TTACATAAC
27691186 TTACATAAC
1 TTACATAAC
*
27691195 TTA-ATTACAT
1 TTACA-TA-AC
*
27691205 TATACACAAC
1 T-TACATAAC
27691215 TTACATAAC
1 TTACATAAC
* *
27691224 ATACACAA-
1 TTACATAAC
27691232 -TACATAAC
1 TTACATAAC
27691240 TTACATAA-
1 TTACATAAC
* *
27691248 -TATATTAC
1 TTACATAAC
27691256 TTACATAAC
1 TTACATAAC
*
27691265 TTACATAAT
1 TTACATAAC
*
27691274 TTACGTAA-
1 TTACATAAC
27691282 -TACATAA-
1 TTACATAAC
* * *
27691289 ATATATATC
1 TTACATAAC
*
27691298 ATATCATAAC
1 TTA-CATAAC
27691308 TTACATAAC
1 TTACATAAC
27691317 T
1 T
27691318 CATATATACT
Statistics
Matches: 251, Mismatches: 44, Indels: 65
0.70 0.12 0.18
Matches are distributed among these distances:
6 1 0.00
7 51 0.20
8 30 0.12
9 141 0.56
10 15 0.06
11 5 0.02
12 4 0.02
13 4 0.02
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (9 bp):
TTACATAAC
Found at i:27691010 original size:12 final size:12
Alignment explanation
Indices: 27690993--27691039 Score: 66
Period size: 12 Copynumber: 4.2 Consensus size: 12
27690983 TACATAATAC
27690993 ATAACTTACATA
1 ATAACTTACATA
27691005 ATAACTTACATA
1 ATAACTTACATA
27691017 AT-A---ACATA
1 ATAACTTACATA
27691025 ATAACTTACATA
1 ATAACTTACATA
27691037 ATA
1 ATA
27691040 TATAGCCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
8 7 0.23
9 1 0.03
11 1 0.03
12 22 0.71
ACGTcount: A:0.53, C:0.15, G:0.00, T:0.32
Consensus pattern (12 bp):
ATAACTTACATA
Found at i:27691025 original size:20 final size:20
Alignment explanation
Indices: 27690990--27691039 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
27690980 ATTTACATAA
*
27690990 TACATAACTTACATAATAACT
1 TACATAA-TAACATAATAACT
27691011 TACATAATAACATAATAACT
1 TACATAATAACATAATAACT
27691031 TACATAATA
1 TACATAATA
27691040 TATAGCCTAC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
20 21 0.75
21 7 0.25
ACGTcount: A:0.52, C:0.16, G:0.00, T:0.32
Consensus pattern (20 bp):
TACATAATAACATAATAACT
Found at i:27691130 original size:22 final size:22
Alignment explanation
Indices: 27691100--27691141 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
27691090 TAAATAACTT
27691100 ATATAATACATAACTTACATTA
1 ATATAATACATAACTTACATTA
*
27691122 ATATTATACATAACTTACAT
1 ATATAATACATAACTTACAT
27691142 AACTTAATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.48, C:0.14, G:0.00, T:0.38
Consensus pattern (22 bp):
ATATAATACATAACTTACATTA
Found at i:27691270 original size:34 final size:34
Alignment explanation
Indices: 27690982--27691283 Score: 146
Period size: 34 Copynumber: 8.8 Consensus size: 34
27690972 ATATATAAAT
27690982 TTACATAA--TACATAACTTACATAATA-ACTTAC
1 TTACATAACTTACATAACTTACATAATATA-TTAC
* *
27691014 ATA-ATAACATA-ATAACTTACATAATATA-TAGC
1 TTACATAACTTACATAACTTACATAATATATTA-C
* * * * * **
27691046 CTACATAAATTGCATAACTCACATAATACACAAC
1 TTACATAACTTACATAACTTACATAATATATTAC
* * * *
27691080 TTACATAACTTAAATAACTTATATAATACATAAC
1 TTACATAACTTACATAACTTACATAATATATTAC
* *
27691114 TTACATTAATATTATACATAACTTACATAACT-TAATTAA
1 TTACA-T-A-ACT-TACATAACTTACATAA-TAT-ATTAC
* **
27691153 TTA-AT-ATTATACATAACTTACATAACT-TACAAC
1 TTACATAACT-TACATAACTTACATAA-TATATTAC
* *
27691186 TTACATAACTTA-ATTACATT--ATACACA-ACTTAC
1 TTACATAACTTACATAAC-TTACATA-ATATA-TTAC
* *
27691219 ATAACATACACAATACATAACTTACATAATATATTAC
1 -TTACATA-AC-TTACATAACTTACATAATATATTAC
* *
27691256 TTACATAACTTACATAATTTACGTAATA
1 TTACATAACTTACATAACTTACATAATA
27691284 CATAAATATA
Statistics
Matches: 207, Mismatches: 37, Indels: 50
0.70 0.13 0.17
Matches are distributed among these distances:
31 6 0.03
32 24 0.12
33 20 0.10
34 99 0.48
35 8 0.04
36 11 0.05
37 13 0.06
38 19 0.09
39 7 0.03
ACGTcount: A:0.47, C:0.18, G:0.01, T:0.34
Consensus pattern (34 bp):
TTACATAACTTACATAACTTACATAATATATTAC
Found at i:27691285 original size:25 final size:25
Alignment explanation
Indices: 27691058--27691288 Score: 103
Period size: 25 Copynumber: 9.2 Consensus size: 25
27691048 ACATAAATTG
* * *
27691058 CATAACTCACATAATACACA-ACTTA
1 CATAACTTACATAATATACATA-ATA
* *
27691083 CATAACTTAAATAACT-TATATAATA
1 CATAACTTACATAA-TATACATAATA
27691108 CATAACTTACATTAATAT---T-ATA
1 CATAACTTACA-TAATATACATAATA
27691130 CATAACTTACATAACT-TA-ATTAATTA
1 CATAACTTACATAA-TATACA-TAA-TA
*
27691156 -AT-ATTATACATAACT-TACATAACTTA
1 CATAACT-TACATAA-TATACATAA--TA
*
27691182 C--AACTTACATAACTTAATTACATTATA
1 CATAACTTACATAA--T-A-TACATAATA
* * *
27691209 CACAACTTACATAACATACACAATA
1 CATAACTTACATAATATACATAATA
* *
27691234 CATAACTTACATAATATA-TTACTTA
1 CATAACTTACATAATATACATA-ATA
* *
27691259 CATAACTTACATAATTTACGTAATA
1 CATAACTTACATAATATACATAATA
27691284 CATAA
1 CATAA
27691289 ATATATATCA
Statistics
Matches: 162, Mismatches: 21, Indels: 46
0.71 0.09 0.20
Matches are distributed among these distances:
21 4 0.02
22 15 0.09
23 1 0.01
24 4 0.02
25 100 0.62
26 18 0.11
27 3 0.02
29 17 0.10
ACGTcount: A:0.47, C:0.18, G:0.00, T:0.34
Consensus pattern (25 bp):
CATAACTTACATAATATACATAATA
Found at i:27695793 original size:44 final size:43
Alignment explanation
Indices: 27695738--27696016 Score: 186
Period size: 44 Copynumber: 6.5 Consensus size: 43
27695728 GCGTTTTTAT
*
27695738 AAAAGCGCCGCTAAA-AGTCATATTCTATAGCGGCGTTTGTGGAA
1 AAAAGCGCCGCTAAAGA-ACATATTCT-TAGCGGCGTTTGTGGAA
* *
27695782 AAAATCGCCGCTAAAGAACATGA-CCTTTAGCGGCGTTTGTGGAA
1 AAAAGCGCCGCTAAAGAACAT-ATTC-TTAGCGGCGTTTGTGGAA
*
27695826 AAAAACGCCGCTAAAGAACATTACTT-TTAGCGGCGTTTGTGG-A
1 AAAAGCGCCGCTAAAGAACA-TA-TTCTTAGCGGCGTTTGTGGAA
* * *
27695869 GAAAGCGCCGCTAAAGAACATGA-CCTTTAGCGGCGTTTCTTGG--
1 AAAAGCGCCGCTAAAGAACAT-ATTC-TTAGCGGCGTTT-GTGGAA
* * ** * * *
27695912 -TATGCGCCGCTAAAGGTCATGTTCTTTAGCGGCGTTTGTTG-T
1 AAAAGCGCCGCTAAAGAACATATTC-TTAGCGGCGTTTGTGGAA
* * * *
27695954 AAAAGCGCCACTAAAGAACAT-TACCTTTAGCGGAGTTT-TTG-A
1 AAAAGCGCCGCTAAAGAACATAT-TC-TTAGCGGCGTTTGTGGAA
**
27695996 GGAAGCGCCGCTAAAGAACAT
1 AAAAGCGCCGCTAAAGAACAT
27696017 GACCTTTAGC
Statistics
Matches: 193, Mismatches: 28, Indels: 30
0.77 0.11 0.12
Matches are distributed among these distances:
41 2 0.01
42 53 0.27
43 60 0.31
44 74 0.38
45 4 0.02
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (43 bp):
AAAAGCGCCGCTAAAGAACATATTCTTAGCGGCGTTTGTGGAA
Found at i:27696012 original size:42 final size:43
Alignment explanation
Indices: 27695765--27696033 Score: 301
Period size: 42 Copynumber: 6.3 Consensus size: 43
27695755 TCATATTCTA
* * *
27695765 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTTG-AGAAAGCGCCGCTAAAGAACATGACCTT
* * * * *
27695809 TAGCGGCGTTTGTGGAAAAAAACGCCGCTAAAGAACATTACTTT
1 TAGCGGCGTTTGTTG-AGAAAGCGCCGCTAAAGAACATGACCTT
*
27695853 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
* * * ** **
27695896 TAGCGGCGTTTCTTG-GTATGCGCCGCTAAAGGTCATGTTCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
* *
27695938 TAGCGGCGTTTGTTGTA-AAAGCGCCACTAAAGAACATTACCTT
1 TAGCGGCGTTTGTTG-AGAAAGCGCCGCTAAAGAACATGACCTT
* *
27695981 TAGCGGAGTTT-TTGAGGAAGCGCCGCTAAAGAACATGACCTT
1 TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
*
27696023 TAGCGGTGTTT
1 TAGCGGCGTTT
27696034 ATTTTTGTAA
Statistics
Matches: 193, Mismatches: 29, Indels: 8
0.84 0.13 0.03
Matches are distributed among these distances:
41 1 0.01
42 71 0.37
43 65 0.34
44 56 0.29
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (43 bp):
TAGCGGCGTTTGTTGAGAAAGCGCCGCTAAAGAACATGACCTT
Found at i:27696024 original size:85 final size:86
Alignment explanation
Indices: 27695765--27696033 Score: 308
Period size: 85 Copynumber: 3.1 Consensus size: 86
27695755 TCATATTCTA
* * * * *
27695765 TAGCGGCGTTTGTGGAAAAAATCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTGTGGAAAAAA
1 TAGCGGCGTTTGTTG-AAAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTCTTG-AGAAA
* * *
27695830 ACGCCGCTAAAGAACATTACTTT
64 GCGCCGCTAAAGAACATGACCTT
* * * *
27695853 TAGCGGCGTTTGTGGAGAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTCTTG-GTATGC
1 TAGCGGCGTTTGTTGAAAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTCTTGAGAAAGC
** **
27695917 GCCGCTAAAGGTCATGTTCTT
66 GCCGCTAAAGAACATGACCTT
* * * * *
27695938 TAGCGGCGTTTGTTGTAAAAGCGCCACTAAAGAACATTACCTTTAGCGGAGTTT-TTGAGGAAGC
1 TAGCGGCGTTTGTTGAAAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTCTTGAGAAAGC
27696002 GCCGCTAAAGAACATGACCTT
66 GCCGCTAAAGAACATGACCTT
*
27696023 TAGCGGTGTTT
1 TAGCGGCGTTT
27696034 ATTTTTGTAA
Statistics
Matches: 153, Mismatches: 27, Indels: 5
0.83 0.15 0.03
Matches are distributed among these distances:
84 3 0.02
85 96 0.63
87 39 0.25
88 15 0.10
ACGTcount: A:0.27, C:0.20, G:0.26, T:0.27
Consensus pattern (86 bp):
TAGCGGCGTTTGTTGAAAAAGCGCCGCTAAAGAACATGACCTTTAGCGGCGTTTCTTGAGAAAGC
GCCGCTAAAGAACATGACCTT
Found at i:27700305 original size:20 final size:20
Alignment explanation
Indices: 27700288--27700349 Score: 90
Period size: 20 Copynumber: 3.1 Consensus size: 20
27700278 ACCGAAGTCT
*
27700288 AAACAGAAGCACCAAAGTGC
1 AAACAGAGGCACCAAAGTGC
*
27700308 AACCAGAGGCACCGAAA-TGC
1 AAACAGAGGCACC-AAAGTGC
27700328 AAACAGAGGCACCAAAGTGC
1 AAACAGAGGCACCAAAGTGC
27700348 AA
1 AA
27700350 TCCCATACAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
19 3 0.08
20 31 0.84
21 3 0.08
ACGTcount: A:0.47, C:0.26, G:0.23, T:0.05
Consensus pattern (20 bp):
AAACAGAGGCACCAAAGTGC
Found at i:27700321 original size:40 final size:40
Alignment explanation
Indices: 27700272--27700349 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
27700262 TAGTGCCAAT
*
27700272 AGAGACACCGAAGT-CTAAACAGAAGCACCAAAGTGCAACC
1 AGAGACACCGAAATGC-AAACAGAAGCACCAAAGTGCAACC
* *
27700312 AGAGGCACCGAAATGCAAACAGAGGCACCAAAGTGCAA
1 AGAGACACCGAAATGCAAACAGAAGCACCAAAGTGCAA
27700350 TCCCATACAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 33 0.97
41 1 0.03
ACGTcount: A:0.45, C:0.26, G:0.23, T:0.06
Consensus pattern (40 bp):
AGAGACACCGAAATGCAAACAGAAGCACCAAAGTGCAACC
Found at i:27703702 original size:15 final size:15
Alignment explanation
Indices: 27703682--27703715 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
27703672 TTGATATCGC
27703682 GATACCCATCTTCTA
1 GATACCCATCTTCTA
27703697 GATACCCATCTTCTA
1 GATACCCATCTTCTA
27703712 GATA
1 GATA
27703716 ATGTTTTTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.32
Consensus pattern (15 bp):
GATACCCATCTTCTA
Found at i:27713432 original size:31 final size:31
Alignment explanation
Indices: 27713394--27713461 Score: 127
Period size: 31 Copynumber: 2.2 Consensus size: 31
27713384 TAAGGACTTC
27713394 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
*
27713425 CAAGTTGAGTCTATATAAAGGTTATTGTAAT
1 CAAGTTGAGTCTATATAAAGGCTATTGTAAT
27713456 CAAGTT
1 CAAGTT
27713462 AAACACACAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.35, C:0.09, G:0.19, T:0.37
Consensus pattern (31 bp):
CAAGTTGAGTCTATATAAAGGCTATTGTAAT
Found at i:27716989 original size:26 final size:26
Alignment explanation
Indices: 27716960--27717009 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
27716950 ATAAAAATCG
27716960 AGAAAAAGT-CAAAAGTAAAAACAAGA
1 AGAAAAAGTACAAAA-TAAAAACAAGA
*
27716986 AGAAAAAGTACAAAATAGAAACAA
1 AGAAAAAGTACAAAATAAAAACAA
27717010 AAGTACTGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.70, C:0.08, G:0.14, T:0.08
Consensus pattern (26 bp):
AGAAAAAGTACAAAATAAAAACAAGA
Found at i:27717005 original size:19 final size:20
Alignment explanation
Indices: 27716969--27717015 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 20
27716959 GAGAAAAAGT
27716969 CAAAAGTA-AAAACAAGAAGA
1 CAAAAGTACAAAACAAGAA-A
*
27716989 -AAAAGTACAAAA-TAGAAA
1 CAAAAGTACAAAACAAGAAA
27717007 CAAAAGTAC
1 CAAAAGTAC
27717016 TGTGATTGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
18 1 0.04
19 19 0.79
20 4 0.17
ACGTcount: A:0.68, C:0.11, G:0.13, T:0.09
Consensus pattern (20 bp):
CAAAAGTACAAAACAAGAAA
Found at i:27719102 original size:13 final size:13
Alignment explanation
Indices: 27719084--27719108 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27719074 AGTAGATTAG
27719084 TAATTATTTCCCA
1 TAATTATTTCCCA
27719097 TAATTATTTCCC
1 TAATTATTTCCC
27719109 CAAACTGCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.24, G:0.00, T:0.48
Consensus pattern (13 bp):
TAATTATTTCCCA
Found at i:27721768 original size:28 final size:28
Alignment explanation
Indices: 27721732--27721806 Score: 132
Period size: 28 Copynumber: 2.7 Consensus size: 28
27721722 AAATATTTAA
* *
27721732 TAAATTCGCACACTTAGTGCTTTACCAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
27721760 TAAACTCGCACACTTAGTGCTTTACAAT
1 TAAACTCGCACACTTAGTGCTTTACAAT
27721788 TAAACTCGCACACTTAGTG
1 TAAACTCGCACACTTAGTG
27721807 TCGAAAGTCA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 45 1.00
ACGTcount: A:0.31, C:0.25, G:0.12, T:0.32
Consensus pattern (28 bp):
TAAACTCGCACACTTAGTGCTTTACAAT
Found at i:27722417 original size:14 final size:15
Alignment explanation
Indices: 27722398--27722426 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
27722388 TCATGAAACC
27722398 TTCACACAT-ATAAA
1 TTCACACATCATAAA
27722412 TTCACACATCATAAA
1 TTCACACATCATAAA
27722427 CACACAAAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (15 bp):
TTCACACATCATAAA
Found at i:27726356 original size:261 final size:261
Alignment explanation
Indices: 27725892--27726404 Score: 1026
Period size: 261 Copynumber: 2.0 Consensus size: 261
27725882 AAATACCTCT
27725892 AACATAGTAGTAAAATTAACAATAAAACAAGAGTTATACAATATCTAAACAATAATAATAAAATA
1 AACATAGTAGTAAAATTAACAATAAAACAAGAGTTATACAATATCTAAACAATAATAATAAAATA
27725957 GTAGCAATATAATAGTGAAATGGTGTTAAAACAACAACATAATTGTAACAAACTATAACATAACA
66 GTAGCAATATAATAGTGAAATGGTGTTAAAACAACAACATAATTGTAACAAACTATAACATAACA
27726022 GTAATAAATAACAACAAACAACAATATTTTTTATGTAAAATTCAGGCTGGGCTAGGCTCGATCAA
131 GTAATAAATAACAACAAACAACAATATTTTTTATGTAAAATTCAGGCTGGGCTAGGCTCGATCAA
27726087 AAAGTCTTGGTTGAGGTCCAACTTATTTTCTAAACAGGTTTTATTTTTTTGTTCAAAAGCAAATA
196 AAAGTCTTGGTTGAGGTCCAACTTATTTTCTAAACAGGTTTTATTTTTTTGTTCAAAAGCAAATA
27726152 C
261 C
27726153 AACATAGTAGTAAAATTAACAATAAAACAAGAGTTATACAATATCTAAACAATAATAATAAAATA
1 AACATAGTAGTAAAATTAACAATAAAACAAGAGTTATACAATATCTAAACAATAATAATAAAATA
27726218 GTAGCAATATAATAGTGAAATGGTGTTAAAACAACAACATAATTGTAACAAACTATAACATAACA
66 GTAGCAATATAATAGTGAAATGGTGTTAAAACAACAACATAATTGTAACAAACTATAACATAACA
27726283 GTAATAAATAACAACAAACAACAATATTTTTTATGTAAAATTCAGGCTGGGCTAGGCTCGATCAA
131 GTAATAAATAACAACAAACAACAATATTTTTTATGTAAAATTCAGGCTGGGCTAGGCTCGATCAA
27726348 AAAGTCTTGGTTGAGGTCCAACTTATTTTCTAAACAGGTTTTATTTTTTTGTTCAAA
196 AAAGTCTTGGTTGAGGTCCAACTTATTTTCTAAACAGGTTTTATTTTTTTGTTCAAA
27726405 CCCATTTTTT
Statistics
Matches: 252, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
261 252 1.00
ACGTcount: A:0.45, C:0.12, G:0.12, T:0.30
Consensus pattern (261 bp):
AACATAGTAGTAAAATTAACAATAAAACAAGAGTTATACAATATCTAAACAATAATAATAAAATA
GTAGCAATATAATAGTGAAATGGTGTTAAAACAACAACATAATTGTAACAAACTATAACATAACA
GTAATAAATAACAACAAACAACAATATTTTTTATGTAAAATTCAGGCTGGGCTAGGCTCGATCAA
AAAGTCTTGGTTGAGGTCCAACTTATTTTCTAAACAGGTTTTATTTTTTTGTTCAAAAGCAAATA
C
Found at i:27734632 original size:21 final size:22
Alignment explanation
Indices: 27734592--27734634 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27734582 CAGGTTTTTA
* *
27734592 TTTTTAAAAATAGTGGATAAGT
1 TTTTTAAAAATAATGAATAAGT
27734614 TTTTTAAAAA-AATGAATAAGT
1 TTTTTAAAAATAATGAATAAGT
27734635 ATTTCTATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.47, C:0.00, G:0.14, T:0.40
Consensus pattern (22 bp):
TTTTTAAAAATAATGAATAAGT
Found at i:27734669 original size:18 final size:19
Alignment explanation
Indices: 27734643--27734682 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
27734633 GTATTTCTAT
*
27734643 TTATTTTTAATATTAT-AA
1 TTATATTTAATATTATCAA
27734661 TTATATTTAATATTATCAA
1 TTATATTTAATATTATCAA
27734680 TTA
1 TTA
27734683 ATTATATTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 15 0.75
19 5 0.25
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (19 bp):
TTATATTTAATATTATCAA
Found at i:27737048 original size:6 final size:6
Alignment explanation
Indices: 27737031--27737060 Score: 51
Period size: 6 Copynumber: 5.0 Consensus size: 6
27737021 TAATGAACTC
*
27737031 TCACCA TTACCA TCACCA TCACCA TCACCA
1 TCACCA TCACCA TCACCA TCACCA TCACCA
27737061 ACAACTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.33, C:0.47, G:0.00, T:0.20
Consensus pattern (6 bp):
TCACCA
Found at i:27742523 original size:63 final size:63
Alignment explanation
Indices: 27742456--27742631 Score: 165
Period size: 63 Copynumber: 2.8 Consensus size: 63
27742446 CATATACAAT
* * * * * * *
27742456 CATTCCCCACATCT-ACACCTTCAACTCCAGTTTATTTTTCACAAGCACCACAACATACGTAAC
1 CATTCCCCACAT-TAACACATACAACACCAATTTATTTTCCACAAGCACCACAACACACGCAAC
** * * *
27742519 CATTCCCTGCATTAACACATACAACACTAATTTATTTTCCACAAGCACCTCAACACACGCAAT
1 CATTCCCCACATTAACACATACAACACCAATTTATTTTCCACAAGCACCACAACACACGCAAC
*** ** * *
27742582 CATTCCTTTCACCAACACATACAACACCAGTTTATTTTCCATAAGCACCA
1 CATTCCCCACATTAACACATACAACACCAATTTATTTTCCACAAGCACCA
27742632 TAGCACGTGC
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
62 1 0.01
63 91 0.99
ACGTcount: A:0.34, C:0.35, G:0.05, T:0.27
Consensus pattern (63 bp):
CATTCCCCACATTAACACATACAACACCAATTTATTTTCCACAAGCACCACAACACACGCAAC
Found at i:27742644 original size:63 final size:64
Alignment explanation
Indices: 27742477--27742694 Score: 201
Period size: 63 Copynumber: 3.5 Consensus size: 64
27742467 TCTACACCTT
* * * * * * ** **
27742477 CAACTCCAGTTTATTTTTCACAAGCACCA-CAACATACGTAACCATTCCCTGCATTAACACATA
1 CAACACCAGTTTATTTTCCACAAGCACCATCAACACACGCAATCATTCACTAAACCAACACATA
* * **
27742540 CAACACTAATTTATTTTCCACAAGCACC-TCAACACACGCAATCATTC-CTTTCACCAACACATA
1 CAACACCAGTTTATTTTCCACAAGCACCATCAACACACGCAATCATTCAC-TAAACCAACACATA
* * ** * *
27742603 CAACACCAGTTTATTTTCCATAAGCACCAT-AGCACGTGCAATCATTCACTAAACCGACACATT
1 CAACACCAGTTTATTTTCCACAAGCACCATCAACACACGCAATCATTCACTAAACCAACACATA
* *
27742666 CATCACCAGTTTATTTTACACAAGCACCA
1 CAACACCAGTTTATTTTCCACAAGCACCA
27742695 CAGTACGCAC
Statistics
Matches: 128, Mismatches: 23, Indels: 8
0.81 0.14 0.05
Matches are distributed among these distances:
62 1 0.01
63 125 0.98
64 2 0.02
ACGTcount: A:0.35, C:0.32, G:0.06, T:0.26
Consensus pattern (64 bp):
CAACACCAGTTTATTTTCCACAAGCACCATCAACACACGCAATCATTCACTAAACCAACACATA
Found at i:27742732 original size:63 final size:63
Alignment explanation
Indices: 27742549--27742752 Score: 178
Period size: 63 Copynumber: 3.2 Consensus size: 63
27742539 ACAACACTAA
* * * * * ** *
27742549 TTTATTTTCCACAAGCACCTCAACACACGCAATCATTC-CTTTCACCAACACA-TACAACACCAG
1 TTTATTTTACACAAGCACCACAGCACGCACAATCATTCAC-TAAACCAACACAGT-CATCACCAG
* * * ** * *
27742612 TTTATTTTCCATAAGCACCATAGCACGTGCAATCATTCACTAAACCGACACATTCATCACCAG
1 TTTATTTTACACAAGCACCACAGCACGCACAATCATTCACTAAACCAACACAGTCATCACCAG
* * * * * * *
27742675 TTTATTTTACACAAGCACCACAGTACGCACAGTTATTCCCTACACCAACATAGTCATCACCAT
1 TTTATTTTACACAAGCACCACAGCACGCACAATCATTCACTAAACCAACACAGTCATCACCAG
27742738 TTTATTTTACACAAG
1 TTTATTTTACACAAG
27742753 TATCACAATA
Statistics
Matches: 115, Mismatches: 24, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
63 113 0.98
64 2 0.02
ACGTcount: A:0.34, C:0.31, G:0.07, T:0.27
Consensus pattern (63 bp):
TTTATTTTACACAAGCACCACAGCACGCACAATCATTCACTAAACCAACACAGTCATCACCAG
Found at i:27750580 original size:42 final size:41
Alignment explanation
Indices: 27750532--27750611 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 41
27750522 GCACGTAGAC
*
27750532 TGCTAGGCTCAATGCCTGAAACAAATACACTGGCACGAAACT
1 TGCTAGGCTCAAGGCCTGAAAC-AATACACTGGCACGAAACT
*
27750574 TGCTAGGCTCAAGGCCTGATACAATACACTGGCACGAA
1 TGCTAGGCTCAAGGCCTGAAACAATACACTGGCACGAA
27750612 GCCTACTAGG
Statistics
Matches: 36, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
41 16 0.44
42 20 0.56
ACGTcount: A:0.34, C:0.26, G:0.21, T:0.19
Consensus pattern (41 bp):
TGCTAGGCTCAAGGCCTGAAACAATACACTGGCACGAAACT
Found at i:27750649 original size:41 final size:41
Alignment explanation
Indices: 27750521--27750676 Score: 136
Period size: 41 Copynumber: 3.8 Consensus size: 41
27750511 ACAATTCATC
* * * *
27750521 GGCACGTAGACTGCTAGGCTCAATGCCTGAAACAAATACACT
1 GGCACGAAGCCTGCTAGGCTCAAAGCCTGATA-AAATACACT
* * * *
27750563 GGCACGAAACTTGCTAGGCTCAAGGCCTGATACAATACACT
1 GGCACGAAGCCTGCTAGGCTCAAAGCCTGATAAAATACACT
* * * *
27750604 GGCACGAAGCCTACTAGGCTTAAAGCCTGATATAATTCA-T
1 GGCACGAAGCCTGCTAGGCTCAAAGCCTGATAAAATACACT
* * *
27750644 CGGCACAAAGTCTGCT-GGACTCAAAACCTGATA
1 -GGCACGAAGCCTGCTAGG-CTCAAAGCCTGATA
27750677 TATTATCTCC
Statistics
Matches: 93, Mismatches: 19, Indels: 5
0.79 0.16 0.04
Matches are distributed among these distances:
40 3 0.03
41 64 0.69
42 26 0.28
ACGTcount: A:0.33, C:0.26, G:0.21, T:0.21
Consensus pattern (41 bp):
GGCACGAAGCCTGCTAGGCTCAAAGCCTGATAAAATACACT
Found at i:27750976 original size:14 final size:14
Alignment explanation
Indices: 27750957--27750983 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
27750947 TCTTATTAAC
27750957 ATAAAATTCTATAT
1 ATAAAATTCTATAT
27750971 ATAAAATTCTATA
1 ATAAAATTCTATA
27750984 GTTCATTAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAAATTCTATAT
Found at i:27760754 original size:25 final size:25
Alignment explanation
Indices: 27760726--27760783 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
27760716 ACAGCTTGTG
*
27760726 AGAGCATACTAATTTATAGCTCGTA
1 AGAGCATACTAATTTATAGCTCATA
* *
27760751 AGAGCATACTGATTTATAGCTCATG
1 AGAGCATACTAATTTATAGCTCATA
27760776 AGAGCATA
1 AGAGCATA
27760784 TCGATCTACA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.29
Consensus pattern (25 bp):
AGAGCATACTAATTTATAGCTCATA
Found at i:27760829 original size:25 final size:25
Alignment explanation
Indices: 27760727--27760834 Score: 78
Period size: 25 Copynumber: 4.3 Consensus size: 25
27760717 CAGCTTGTGA
** * *
27760727 GAGCATACTAATTTATAGCTCGTAA
1 GAGCATACCGATTCATAGCTCGTAT
* * *
27760752 GAGCATACTGATTTATAGCTCATGA-
1 GAGCATACCGATTCATAGCTCGT-AT
* * *
27760777 GAGCATATCGA-TCTACAGCTC-AAGT
1 GAGCATACCGATTC-ATAGCTCGTA-T
27760802 GAGCATACCGATTCATAGCTCGTAT
1 GAGCATACCGATTCATAGCTCGTAT
27760827 GAGCATAC
1 GAGCATAC
27760835 ATGTACAAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 12
0.75 0.11 0.13
Matches are distributed among these distances:
23 1 0.01
24 1 0.01
25 61 0.91
26 4 0.06
ACGTcount: A:0.32, C:0.20, G:0.19, T:0.28
Consensus pattern (25 bp):
GAGCATACCGATTCATAGCTCGTAT
Found at i:27778844 original size:20 final size:20
Alignment explanation
Indices: 27778819--27778917 Score: 78
Period size: 20 Copynumber: 5.0 Consensus size: 20
27778809 TAGATGCATA
27778819 ACAGGGGCACCGAAGTGCAG
1 ACAGGGGCACCGAAGTGCAG
* *
27778839 ACAGGGGCA-CAAATGTGCAA
1 ACAGGGGCACCGAA-GTGCAG
*
27778859 ACAGGGGCACC-ATAGTG-TG
1 ACAGGGGCACCGA-AGTGCAG
* * * *
27778878 AATAGGGACACCGAAGTGTAT
1 -ACAGGGGCACCGAAGTGCAG
*
27778899 ACAGGGGCATCGAAGTGCA
1 ACAGGGGCACCGAAGTGCA
27778918 AATCCCATAC
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
19 3 0.05
20 55 0.90
21 3 0.05
ACGTcount: A:0.33, C:0.20, G:0.34, T:0.12
Consensus pattern (20 bp):
ACAGGGGCACCGAAGTGCAG
Found at i:27781656 original size:41 final size:40
Alignment explanation
Indices: 27781562--27781675 Score: 120
Period size: 41 Copynumber: 2.8 Consensus size: 40
27781552 ATTTTACCTT
* * * * *
27781562 ATACAATTCACTGGTACGTAACCTACTAAGCTCAAGCCTA
1 ATACAATTCACCGGCACGAAACCTGCTAGGCTCAAGCCTA
* * *
27781602 AAACAAATACACCGGCACGAAACCTGCTAGGCTCAAAGCCTG
1 ATAC-AATTCACCGGCACGAAACCTGCTAGGCTC-AAGCCTA
* *
27781644 ATACAATTCACCGGCATGAAGCCTGCTAGGCT
1 ATACAATTCACCGGCACGAAACCTGCTAGGCT
27781676 TAAGGCCGGA
Statistics
Matches: 60, Mismatches: 12, Indels: 3
0.80 0.16 0.04
Matches are distributed among these distances:
40 3 0.05
41 48 0.80
42 9 0.15
ACGTcount: A:0.34, C:0.29, G:0.18, T:0.19
Consensus pattern (40 bp):
ATACAATTCACCGGCACGAAACCTGCTAGGCTCAAGCCTA
Found at i:27783943 original size:16 final size:16
Alignment explanation
Indices: 27783917--27783950 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
27783907 GATTAAGGGC
27783917 TTTAAGTTT-AATTAA
1 TTTAAGTTTAAATTAA
27783932 TTTAATGTTTAAATTAA
1 TTTAA-GTTTAAATTAA
27783949 TT
1 TT
27783951 AAACTATGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 5 0.29
16 4 0.24
17 8 0.47
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (16 bp):
TTTAAGTTTAAATTAA
Found at i:27790092 original size:6 final size:6
Alignment explanation
Indices: 27790081--27790121 Score: 82
Period size: 6 Copynumber: 6.8 Consensus size: 6
27790071 GTTTTTAAGC
27790081 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTG
1 TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTGG TTTTG
27790122 TTTCCTTGTT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.00, C:0.00, G:0.32, T:0.68
Consensus pattern (6 bp):
TTTTGG
Found at i:27795169 original size:18 final size:18
Alignment explanation
Indices: 27795146--27795206 Score: 61
Period size: 18 Copynumber: 3.1 Consensus size: 18
27795136 TTCTTTTTCC
27795146 TTATTTTTATTTATTTAT
1 TTATTTTTATTTATTTAT
27795164 TTATTTATT-TTTATTCTTAGTT
1 TTATTT-TTATTTA-T-TTA--T
27795186 TTATTTTTATTTTATTTAT
1 TTATTTTTA-TTTATTTAT
27795205 TT
1 TT
27795207 TGAGAATTAT
Statistics
Matches: 36, Mismatches: 0, Indels: 13
0.73 0.00 0.27
Matches are distributed among these distances:
18 10 0.28
19 6 0.17
20 3 0.08
21 5 0.14
22 8 0.22
23 4 0.11
ACGTcount: A:0.20, C:0.02, G:0.02, T:0.77
Consensus pattern (18 bp):
TTATTTTTATTTATTTAT
Found at i:27795217 original size:45 final size:40
Alignment explanation
Indices: 27795146--27795235 Score: 90
Period size: 45 Copynumber: 2.1 Consensus size: 40
27795136 TTCTTTTTCC
* * *
27795146 TTATTTTTATTTATTTATTTATTTATTTTTATTCTTAGTT
1 TTATTTTTATTTATTTATTTAATTATTATTATTATTAGTT
* *
27795186 TTATTTTTATTTTATTTATTTTGAGAATTATTATTGTTATTATTT
1 TTATTTTTA-TTTATTTA-TTT---AATTATTATTATTATTAGTT
27795231 TTATT
1 TTATT
27795236 ACCATTGTTC
Statistics
Matches: 40, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
40 9 0.22
41 8 0.20
42 3 0.08
45 20 0.50
ACGTcount: A:0.22, C:0.01, G:0.04, T:0.72
Consensus pattern (40 bp):
TTATTTTTATTTATTTATTTAATTATTATTATTATTAGTT
Found at i:27808633 original size:17 final size:17
Alignment explanation
Indices: 27808600--27808633 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
27808590 TTGTGTTTTG
*
27808600 TGCAAAAAGGGCTAAAT
1 TGCAAAAAGGGCAAAAT
*
27808617 TGCAAAAAGTGCAAAAT
1 TGCAAAAAGGGCAAAAT
27808634 GTTAGGGGCA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.12, G:0.21, T:0.18
Consensus pattern (17 bp):
TGCAAAAAGGGCAAAAT
Found at i:27811669 original size:3 final size:3
Alignment explanation
Indices: 27811663--27811701 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
27811653 ATAGTAGTAG
27811663 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
27811702 CTTAATAACA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:27813555 original size:100 final size:100
Alignment explanation
Indices: 27813380--27813569 Score: 247
Period size: 100 Copynumber: 1.9 Consensus size: 100
27813370 CGCCATCTGG
** * * *
27813380 AATGTCGGGGAAACAAGATTCATTGTCGTAGCTTCAATCTGTTCCACTACACTGCCAGGGAAGTA
1 AATGTCGGGGAAACAAGATTCACCGTCGTACCTTCAATCTGTTCCACTACACCGCCAGAGAAGTA
*
27813445 AGATTCGTCGTTGTGGCATCAATCTTTTTAATTGC
66 AGATTCGTCGTTGCGGCATCAATCTTTTTAATTGC
* * * * *
27813480 AATGTTGGGGAAACGAGATTCGCCGTCGTACCTTTAATCTGTTCCACTACACCGGCAGA-AGAGT
1 AATGTCGGGGAAACAAGATTCACCGTCGTACCTTCAATCTGTTCCACTACACCGCCAGAGA-AGT
* *
27813544 AAGATTTGTCGTTGCGGCTTCAATCT
65 AAGATTCGTCGTTGCGGCATCAATCT
27813570 GCTCTACTGT
Statistics
Matches: 76, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
99 1 0.01
100 75 0.99
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.31
Consensus pattern (100 bp):
AATGTCGGGGAAACAAGATTCACCGTCGTACCTTCAATCTGTTCCACTACACCGCCAGAGAAGTA
AGATTCGTCGTTGCGGCATCAATCTTTTTAATTGC
Found at i:27813927 original size:131 final size:131
Alignment explanation
Indices: 27813755--27814001 Score: 372
Period size: 131 Copynumber: 1.9 Consensus size: 131
27813745 ACAGGAAGGC
** *
27813755 AAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGGTAGGATTCACAATCTTCAACCT
1 AAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGACAAGATTCACAATCTTCAACCT
27813820 ATTCCACTGCTGACCAGGGAGATAAGGCTGGGGACTTCGATCTGCTACACTACTGCTTAGGGAGA
66 ATTCCACTGCTGACCAGGGAGATAAGGCTGGGGACTTCGATCTGCTACACTACTGCTTAGGGAGA
27813885 T
131 T
* * *
27813886 AAGATCTG-TAATTTTCAACCTACTCCACTGCTGGC-CGGGGAGACAAGATTCATAATCTTCAAC
1 AAGATCTGCT-ATTTTCAACCTACTCCACTACT-GCTCAGGGAGACAAGATTCACAATCTTCAAC
* * * *
27813949 CTATTCCACTGCTGACCAGGGAGATAAGGTTGGTGTCTTCGATCTGCTTCACT
64 CTATTCCACTGCTGACCAGGGAGATAAGGCTGGGGACTTCGATCTGCTACACT
27814002 GTCGGTGCAG
Statistics
Matches: 104, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
130 1 0.01
131 101 0.97
132 2 0.02
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (131 bp):
AAGATCTGCTATTTTCAACCTACTCCACTACTGCTCAGGGAGACAAGATTCACAATCTTCAACCT
ATTCCACTGCTGACCAGGGAGATAAGGCTGGGGACTTCGATCTGCTACACTACTGCTTAGGGAGA
T
Found at i:27814038 original size:88 final size:88
Alignment explanation
Indices: 27813964--27814649 Score: 942
Period size: 88 Copynumber: 7.8 Consensus size: 88
27813954 CCACTGCTGA
** *
27813964 CCAGGGAGATAAGGTTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
*
27814029 TTTTTAACCTGCTCCGCTACAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * *
27814052 CTAGGGAGGCAAGGTTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
27814117 TTTTTAACCTGCTCCGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* *
27814140 CCAGGGA-GCAAGGCTGGTGTTTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGTTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
27814204 TTTTTAACCTGCTCCGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * * * * *
27814227 CCAGGGAGGCAAGGCTGGTATCTTTGATCTGCTTCACTATCGATGTAGGAAGGTAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
*
27814292 TTTTTAACTTGCTCCGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * * * * * *
27814315 CCAGGGAGGTAAGGCTGGTATTTTCGATTTGTTTCACTGTCGGTGCAGGAAGGTAAGATCTGTTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
*
27814380 TTTTTAACCTACTCCGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * * * * ** * * *
27814403 CCAGGGATGCAAGGCTAGTTTCTTTGATCTGCTTCGCTGTCGGTATAGGAAGACAAGATTTGTTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
**
27814468 TTTTTAACCTGCTTTGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * * **
27814491 CCAGAGAGGCAAGGCTAGTGTCTTTGATCTGCTTCGTTGTCGGTGCAGGAAGGCAAGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
*
27814556 TTTTTAACCTGCTTCGCTGCAAC
66 TTTTTAACCTGCTCCGCTGCAAC
* * * * *
27814579 CTAGGGAGGCAAGGCTGGTGTCTTCGATTTGCTTCGCTGTCGGTGCAGGAAGGTATGATCTGCTA
1 CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
27814644 TTTTTA
66 TTTTTA
27814650 CTAATTTGCT
Statistics
Matches: 534, Mismatches: 63, Indels: 2
0.89 0.11 0.00
Matches are distributed among these distances:
87 85 0.16
88 449 0.84
ACGTcount: A:0.21, C:0.21, G:0.27, T:0.31
Consensus pattern (88 bp):
CCAGGGAGGCAAGGCTGGTGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTA
TTTTTAACCTGCTCCGCTGCAAC
Found at i:27814076 original size:131 final size:128
Alignment explanation
Indices: 27813719--27814067 Score: 330
Period size: 131 Copynumber: 2.6 Consensus size: 128
27813709 ATAAAACTGA
* *
27813719 TGTCTTCGATCTGCTTCACTGCCAATACAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACT
1 TGTCTTCGATCTGCTTCACTG--ACTGCAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACT
** *
27813784 ACTGCTCAGGGAGG-TAGGATTCACA-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGG
64 ACACCT-AGGGAGGCAAGG-TT-A-ATATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGG
27813847 CTGG
125 CTGG
* * * * **
27813851 GGACTTCGATCTGCTACACT-ACTGCTTAGGGAGATAAGATCTG-TAATTTTCAACCTACTCCAC
1 TGTCTTCGATCTGCTTCACTGACTGC--AGGAAGGCAAGATCTGCT-ATTTTCAACCTACTCCAC
* * * * * *
27813914 TGCTGGCC-GGGGAGACAAGATTCATAATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGG
63 TAC--ACCTAGGGAGGCAAGGTTAAT-ATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGG
*
27813978 TTGG
125 CTGG
* * * *
27813982 TGTCTTCGATCTGCTTCACTGTCGGTGCAGGAAGGCAAGATCTGCTATTTTTAACCTGCTCCGCT
1 TGTCTTCGATCTGCTTCACTGAC--TGCAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACT
27814047 ACAACCTAGGGAGGCAAGGTT
64 AC-ACCTAGGGAGGCAAGGTT
27814068 GGTGTCTTCG
Statistics
Matches: 171, Mismatches: 33, Indels: 26
0.74 0.14 0.11
Matches are distributed among these distances:
129 4 0.02
130 1 0.01
131 100 0.58
132 61 0.36
133 2 0.01
134 3 0.02
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.27
Consensus pattern (128 bp):
TGTCTTCGATCTGCTTCACTGACTGCAGGAAGGCAAGATCTGCTATTTTCAACCTACTCCACTAC
ACCTAGGGAGGCAAGGTTAATATCTTCAACCTATTCCACTGCTGACCAGGGAGATAAGGCTGG
Found at i:27815977 original size:14 final size:15
Alignment explanation
Indices: 27815954--27815986 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
27815944 ATCATCGTTT
*
27815954 TTCCAGATAAGA-CC
1 TTCCACATAAGATCC
27815968 TTCCACATAAGATCC
1 TTCCACATAAGATCC
27815983 TTCC
1 TTCC
27815987 CGGCTTGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 11 0.65
15 6 0.35
ACGTcount: A:0.30, C:0.33, G:0.09, T:0.27
Consensus pattern (15 bp):
TTCCACATAAGATCC
Found at i:27820561 original size:13 final size:14
Alignment explanation
Indices: 27820542--27820579 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
27820532 CAATGGCATA
27820542 GAAATAATATAAAC
1 GAAATAATATAAAC
27820556 -AAATAA-ATAAAC
1 GAAATAATATAAAC
27820568 GAAATTAATATA
1 GAAA-TAATATA
27820580 CAAAAAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 9 0.43
14 3 0.14
15 3 0.14
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.24
Consensus pattern (14 bp):
GAAATAATATAAAC
Found at i:27820649 original size:14 final size:15
Alignment explanation
Indices: 27820620--27820649 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
27820610 AAAGTATCAA
27820620 ATAAATGAACAAAAT
1 ATAAATGAACAAAAT
27820635 ATAAATGAA-AAAAT
1 ATAAATGAACAAAAT
27820649 A
1 A
27820650 AAACAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 6 0.40
15 9 0.60
ACGTcount: A:0.70, C:0.03, G:0.07, T:0.20
Consensus pattern (15 bp):
ATAAATGAACAAAAT
Found at i:27820962 original size:28 final size:27
Alignment explanation
Indices: 27820930--27821033 Score: 81
Period size: 26 Copynumber: 3.8 Consensus size: 27
27820920 AAAAAAATAT
27820930 AAATATATACATGTACATATATATAAAA
1 AAATATATACAT-TACATATATATAAAA
* * * *
27820958 AAATATCTACA-TATATATAGATTATAA
1 AAATATATACATTACATATATA-TAAAA
*
27820985 AAA-AGATA-ATTACATATATATAAAAA
1 AAATATATACATTACATATATAT-AAAA
27821011 CAAATAATAATA-ATTACATATAT
1 -AAAT-AT-ATACATTACATATAT
27821034 TAATTTCGTT
Statistics
Matches: 59, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
25 2 0.03
26 22 0.37
27 10 0.17
28 10 0.17
29 1 0.02
30 14 0.24
ACGTcount: A:0.58, C:0.07, G:0.03, T:0.33
Consensus pattern (27 bp):
AAATATATACATTACATATATATAAAA
Found at i:27821063 original size:13 final size:14
Alignment explanation
Indices: 27821029--27821066 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
27821019 AATAATTACA
27821029 TATATTAATTTCGTT
1 TATATT-ATTTCGTT
27821044 TAT-TTATTT-GTT
1 TATATTATTTCGTT
27821056 TATATTATTTC
1 TATATTATTTC
27821067 TATGCCATTG
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 6 0.29
13 10 0.48
14 2 0.10
15 3 0.14
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.66
Consensus pattern (14 bp):
TATATTATTTCGTT
Found at i:27821274 original size:3 final size:3
Alignment explanation
Indices: 27821266--27821322 Score: 69
Period size: 3 Copynumber: 19.0 Consensus size: 3
27821256 GTATATATAG
* * * * *
27821266 TAA TAA TAA TAA TAA TAA TAA TGA TAA TGA TAA TAA TAA CAA CAA CAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
27821314 TAA TAA TAA
1 TAA TAA TAA
27821323 CTTAATAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 48 1.00
ACGTcount: A:0.63, C:0.05, G:0.04, T:0.28
Consensus pattern (3 bp):
TAA
Found at i:27823906 original size:18 final size:20
Alignment explanation
Indices: 27823885--27823923 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
27823875 TATTAAAGTT
27823885 AAACTCT-TCC-CATCAATA
1 AAACTCTATCCTCATCAATA
*
27823903 AAACTTTATCCTCATCAATA
1 AAACTCTATCCTCATCAATA
27823923 A
1 A
27823924 CTTAGAAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 6 0.33
19 3 0.17
20 9 0.50
ACGTcount: A:0.41, C:0.28, G:0.00, T:0.31
Consensus pattern (20 bp):
AAACTCTATCCTCATCAATA
Found at i:27826691 original size:27 final size:27
Alignment explanation
Indices: 27826653--27826784 Score: 147
Period size: 27 Copynumber: 4.9 Consensus size: 27
27826643 CATAAACACG
*
27826653 TCATGAAAGAAAAGCCTTTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
27826680 TCATGAAAGAAAAACCTTTGTGGCAAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
27826707 TCGTTAAAGAACAACCTTTATGGTGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
*
27826734 TCATGAAAGAAAAACCTCTGTGGCGAA
1 TCATGAAAGAAAAACCTTTGTGGCGAA
* * * * *
27826761 CCCTGCAAGGATAACCTTTGTGGC
1 TCATGAAAGAAAAACCTTTGTGGC
27826785 ATACTACGGA
Statistics
Matches: 85, Mismatches: 20, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 85 1.00
ACGTcount: A:0.36, C:0.18, G:0.22, T:0.23
Consensus pattern (27 bp):
TCATGAAAGAAAAACCTTTGTGGCGAA
Found at i:27835227 original size:25 final size:26
Alignment explanation
Indices: 27835193--27835244 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
27835183 TTTAAAATAC
* *
27835193 TTTTAAAAT-ATTTTTTATTTTTTAT
1 TTTTAAAATAATTTTTTAATGTTTAT
27835218 TTTTAAAATAATTTTTTAATGTTTAT
1 TTTTAAAATAATTTTTTAATGTTTAT
27835244 T
1 T
27835245 AAAAAATAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (26 bp):
TTTTAAAATAATTTTTTAATGTTTAT
Found at i:27842590 original size:22 final size:22
Alignment explanation
Indices: 27842562--27842606 Score: 81
Period size: 22 Copynumber: 2.0 Consensus size: 22
27842552 TAAACCAATT
27842562 TGCGGTACTAAACATTTTTCCA
1 TGCGGTACTAAACATTTTTCCA
*
27842584 TGCGGTACTAAATATTTTTCCA
1 TGCGGTACTAAACATTTTTCCA
27842606 T
1 T
27842607 ACAGTACAAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (22 bp):
TGCGGTACTAAACATTTTTCCA
Found at i:27842613 original size:22 final size:22
Alignment explanation
Indices: 27842566--27842613 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
27842556 CCAATTTGCG
* *
27842566 GTACTAAACATTTTTCCATGCG
1 GTACTAAACATTTTTCCATACA
*
27842588 GTACTAAATATTTTTCCATACA
1 GTACTAAACATTTTTCCATACA
27842610 GTAC
1 GTAC
27842614 AATTAAGGTA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (22 bp):
GTACTAAACATTTTTCCATACA
Found at i:27850472 original size:2 final size:2
Alignment explanation
Indices: 27850427--27850452 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27850417 ATCCAAAGCC
27850427 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
27850453 TATTTTAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27852707 original size:19 final size:19
Alignment explanation
Indices: 27852672--27852709 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
27852662 AACAAGTTCT
**
27852672 ATACTTTCTTTGGAAATTC
1 ATACTTTCTTTCAAAATTC
27852691 ATACTTTCTTTCAAAATTC
1 ATACTTTCTTTCAAAATTC
27852710 TCTCTGTACT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.29, C:0.18, G:0.05, T:0.47
Consensus pattern (19 bp):
ATACTTTCTTTCAAAATTC
Found at i:27856744 original size:27 final size:28
Alignment explanation
Indices: 27856700--27856774 Score: 100
Period size: 27 Copynumber: 2.8 Consensus size: 28
27856690 ACACCTTGTA
*
27856700 ATCCCTGTGTTTACTATCCCAACGGACT
1 ATCCCCGTGTTTACTATCCCAACGGACT
*
27856728 A-CCCCGTGTTTACTATCCCAATGGACT
1 ATCCCCGTGTTTACTATCCCAACGGACT
**
27856755 ATCTTC-TGTTTACTATCCCA
1 ATCCCCGTGTTTACTATCCCA
27856775 GGAGACTATA
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
27 39 0.93
28 3 0.07
ACGTcount: A:0.21, C:0.32, G:0.12, T:0.35
Consensus pattern (28 bp):
ATCCCCGTGTTTACTATCCCAACGGACT
Found at i:27858341 original size:27 final size:27
Alignment explanation
Indices: 27858311--27858560 Score: 256
Period size: 27 Copynumber: 9.3 Consensus size: 27
27858301 TATAATAGTT
*
27858311 ATTTTACCC-TACGAGGGTATTTCAATA
1 ATTTTACCCAT-CGAGGGTATTTCGATA
* *
27858338 ATTTTACCCATCGAGGGTATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
**
27858365 ATTTTACCC-TTTAGGGTTATTTCGATA
1 ATTTTACCCATCGAGGG-TATTTCGATA
* * * *
27858392 GTTTTACCCTTCGGGGGTATTTCGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
** * * *
27858419 ATTTTACCTTTCGAGGGAATTTTGGTA
1 ATTTTACCCATCGAGGGTATTTCGATA
*
27858446 ATTTTACCCATCGAGGGTATTT-TAGTA
1 ATTTTACCCATCGAGGGTATTTCGA-TA
27858473 ATTTTACCCATCGAGGGTATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGATA
*
27858500 ATTTTACCCATCGAGGATATTTCGATA
1 ATTTTACCCATCGAGGGTATTTCGATA
** * *
27858527 ATTTTACCTTTTG-GGAGTATTTCGGTA
1 ATTTTACCCATCGAGG-GTATTTCGATA
27858554 ATTTTAC
1 ATTTTAC
27858561 AACCTTTTCA
Statistics
Matches: 188, Mismatches: 29, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 7 0.04
27 175 0.93
28 6 0.03
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (27 bp):
ATTTTACCCATCGAGGGTATTTCGATA
Found at i:27858433 original size:81 final size:80
Alignment explanation
Indices: 27858311--27858560 Score: 295
Period size: 81 Copynumber: 3.1 Consensus size: 80
27858301 TATAATAGTT
* *
27858311 ATTTTACCCTACGAGGGTATTTCAATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCTT
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCTT
27858376 TAGGGTTATTTCGATA
66 TAGGG-TATTTCGATA
* * * ** *
27858392 GTTTTACCCTTCGGGGGTATTTCGGTAATTTTACCTTTCGAGGGAATTTTGGTAATTTTACCCAT
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCC-T
** *
27858457 CGAGGGTATTT-TAGTA
65 TTAGGGTATTTCGA-TA
* * * * *
27858473 ATTTTACCCATCGAGGGTATTTCGATAATTTTACCCATCGAGGATATTTCGATAATTTTACCTTT
1 ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCTT
* *
27858538 TGGGAGTATTTCGGTA
66 TAGG-GTATTTCGATA
27858554 ATTTTAC
1 ATTTTAC
27858561 AACCTTTTCA
Statistics
Matches: 138, Mismatches: 27, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
80 4 0.03
81 129 0.93
82 5 0.04
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (80 bp):
ATTTTACCCTTCGAGGGTATTTCGATAATTTTACCCATCGAGGGTATTTTGGTAATTTTACCCTT
TAGGGTATTTCGATA
Found at i:27862832 original size:27 final size:27
Alignment explanation
Indices: 27862787--27862884 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
27862777 TGTACATGTA
* *
27862787 TGCTCACACGGGCTCTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
*
27862814 TGCTTACACGAGCTGTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
* *
27862841 TGCTCACACAAGCTGTGAAAATAGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
* *
27862868 TGCTCAAATGAGCTGTG
1 TGCTCACACGAGCTGTG
27862885 GGTCGAAACG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (27 bp):
TGCTCACACGAGCTGTGAAAATGGGCC
Found at i:27883201 original size:27 final size:27
Alignment explanation
Indices: 27883156--27883253 Score: 133
Period size: 27 Copynumber: 3.6 Consensus size: 27
27883146 TGTACATGTA
* *
27883156 TGCTCACACGGGCTCTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
*
27883183 TGCTTACACGAGCTGTGAAAATGGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
* *
27883210 TGCTCACACAAGCTGTGAAAATAGGCC
1 TGCTCACACGAGCTGTGAAAATGGGCC
* *
27883237 TGCTCAAATGAGCTGTG
1 TGCTCACACGAGCTGTG
27883254 GGTCGAAACG
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 62 1.00
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (27 bp):
TGCTCACACGAGCTGTGAAAATGGGCC
Found at i:27886691 original size:22 final size:22
Alignment explanation
Indices: 27886660--27886703 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27886650 TACACCAAAA
* *
27886660 TAGGCTTTTAGCGGCGTTTTTT
1 TAGGCCTTTAGCGGCGCTTTTT
*
27886682 TAGGCCTTTAGTGGCGCTTTTT
1 TAGGCCTTTAGCGGCGCTTTTT
27886704 ACCGCCGCTA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.09, C:0.16, G:0.27, T:0.48
Consensus pattern (22 bp):
TAGGCCTTTAGCGGCGCTTTTT
Found at i:27886850 original size:43 final size:43
Alignment explanation
Indices: 27886797--27886998 Score: 316
Period size: 43 Copynumber: 4.7 Consensus size: 43
27886787 TTATGAAACA
*
27886797 AAACGCCGCTAAAGAACATGATCTTTAGCGGCACTTTACCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
* *
27886840 AAACGCCGCTAAAAAACATGACCTTTAGCGGCGCTTTACCCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
* * *
27886883 AAACGCCGCTAAAGATCATGACCTTTAGTGGCGCTTTTA-CCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGC-TTTACCCAC
* *
27886926 AAACGCCACTAAAGAACATGATCTTTAGCGGCGCTTTAACCAC
1 AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
27886969 AAACGCCGCTAAAGAACATGATCTTTAGCG
1 AAACGCCGCTAAAGAACATGATCTTTAGCG
27886999 TCGTTTTTGA
Statistics
Matches: 146, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
42 4 0.03
43 138 0.95
44 4 0.03
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (43 bp):
AAACGCCGCTAAAGAACATGATCTTTAGCGGCGCTTTACCCAC
Found at i:27897532 original size:4 final size:4
Alignment explanation
Indices: 27897523--27897856 Score: 625
Period size: 4 Copynumber: 83.5 Consensus size: 4
27897513 TGACAAGTTG
27897523 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
27897571 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
27897619 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
27897667 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
27897715 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT
*
27897763 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AATGT GTGT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT -ATGT ATGT
* *
27897812 AT-T GTGT ATGT ATGT ATGT ATGT GTGT ATGT ATGT ATGT ATGT AT
1 ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT ATGT AT
27897857 ATGAGAAGTT
Statistics
Matches: 322, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
3 2 0.01
4 316 0.98
5 4 0.01
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
ATGT
Found at i:27900335 original size:2 final size:2
Alignment explanation
Indices: 27900328--27900362 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
27900318 GTGTCTTTTC
27900328 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27900363 TGTAGTTTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:27900850 original size:12 final size:11
Alignment explanation
Indices: 27900828--27900857 Score: 51
Period size: 12 Copynumber: 2.6 Consensus size: 11
27900818 TAGCTTAAGG
27900828 TTTCTTTAGTT
1 TTTCTTTAGTT
27900839 TTTCTCTTAGTT
1 TTTCT-TTAGTT
27900851 TTTCTTT
1 TTTCTTT
27900858 TTCTTCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 7 0.39
12 11 0.61
ACGTcount: A:0.07, C:0.13, G:0.07, T:0.73
Consensus pattern (11 bp):
TTTCTTTAGTT
Found at i:27901683 original size:31 final size:31
Alignment explanation
Indices: 27901645--27901706 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
27901635 AGGCAAATTA
*
27901645 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCATAATAAAACTCTTT
27901676 CAAGAGTAATTGAATCATAATAAAACTCTTT
1 CAAGAGTAATTGAATCATAATAAAACTCTTT
27901707 AAAATTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.44, C:0.15, G:0.10, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCATAATAAAACTCTTT
Found at i:27907690 original size:12 final size:11
Alignment explanation
Indices: 27907649--27907709 Score: 54
Period size: 12 Copynumber: 5.5 Consensus size: 11
27907639 AGGTAGGTAA
27907649 CTTTTTTTTTG
1 CTTTTTTTTTG
*
27907660 CGGTTTTTTTTG
1 C-TTTTTTTTTG
**
27907672 C--GCTTTTTG
1 CTTTTTTTTTG
27907681 CTTCTTTTTTTG
1 CTT-TTTTTTTG
*
27907693 CTTTTTTTTCG
1 CTTTTTTTTTG
27907704 CTTTTT
1 CTTTTT
27907710 GCTTTTTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
9 7 0.17
11 14 0.35
12 19 0.47
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (11 bp):
CTTTTTTTTTG
Found at i:27907696 original size:9 final size:9
Alignment explanation
Indices: 27907684--27907728 Score: 54
Period size: 9 Copynumber: 4.9 Consensus size: 9
27907674 CTTTTTGCTT
27907684 CTTTTTTTG
1 CTTTTTTTG
*
27907693 CTTTTTTTT
1 CTTTTTTTG
**
27907702 CGCTTTTTG
1 CTTTTTTTG
27907711 CTTTTTTTG
1 CTTTTTTTG
27907720 CTGTTTTTT
1 CT-TTTTTT
27907729 TAAAGAATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
9 23 0.79
10 6 0.21
ACGTcount: A:0.00, C:0.13, G:0.11, T:0.76
Consensus pattern (9 bp):
CTTTTTTTG
Found at i:27907728 original size:30 final size:30
Alignment explanation
Indices: 27907652--27907729 Score: 106
Period size: 30 Copynumber: 2.6 Consensus size: 30
27907642 TAGGTAACTT
*
27907652 TTTTTTTGCGGTTTTTTTTGCGCTTTTTGC
1 TTTTTTTGCTGTTTTTTTTGCGCTTTTTGC
*
27907682 TTCTTTTT-TTGCTTTTTTTT-CGCTTTTTGC
1 TT-TTTTTGCTG-TTTTTTTTGCGCTTTTTGC
27907712 TTTTTTTGCTGTTTTTTT
1 TTTTTTTGCTGTTTTTTT
27907730 AAAGAATAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
29 12 0.29
30 17 0.40
31 13 0.31
ACGTcount: A:0.00, C:0.13, G:0.14, T:0.73
Consensus pattern (30 bp):
TTTTTTTGCTGTTTTTTTTGCGCTTTTTGC
Found at i:27908312 original size:31 final size:31
Alignment explanation
Indices: 27908269--27908330 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
27908259 AGGCAAATTA
27908269 CAAGAGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
*
27908300 CAAGGGTAATTGAATCCTAATAAAACTCTTT
1 CAAGAGTAATTGAATCCTAATAAAACTCTTT
27908331 AAAATTATCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.32
Consensus pattern (31 bp):
CAAGAGTAATTGAATCCTAATAAAACTCTTT
Found at i:27914547 original size:49 final size:50
Alignment explanation
Indices: 27914467--27914570 Score: 165
Period size: 49 Copynumber: 2.1 Consensus size: 50
27914457 GTATGCTCAT
* * *
27914467 ACGAGCTGTGAATCGGTAAGCTTATACGAGCTGAGAATCGATAAGCTCTC
1 ACGAGATGTGAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
*
27914517 ACGAGATGT-AATCGGTAAGCTCATAAGAGCTGAGAATCGGTAAGCTCTC
1 ACGAGATGTGAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
27914566 ACGAG
1 ACGAG
27914571 CTGCAATTGG
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
49 42 0.84
50 8 0.16
ACGTcount: A:0.32, C:0.19, G:0.27, T:0.22
Consensus pattern (50 bp):
ACGAGATGTGAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
Found at i:27914563 original size:25 final size:25
Alignment explanation
Indices: 27914461--27914573 Score: 133
Period size: 25 Copynumber: 4.6 Consensus size: 25
27914451 GTATATGTAT
*
27914461 GCTCATACGAGCTGTGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
* *
27914486 GCTTATACGAGCTGAGAATCGATAA
1 GCTCATACGAGCTGAGAATCGGTAA
* *
27914511 GCTC-TCACGAGATG-TAATCGGTAA
1 GCTCAT-ACGAGCTGAGAATCGGTAA
*
27914535 GCTCATAAGAGCTGAGAATCGGTAA
1 GCTCATACGAGCTGAGAATCGGTAA
27914560 GCTC-TCACGAGCTG
1 GCTCAT-ACGAGCTG
27914574 CAATTGGTAA
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
24 20 0.27
25 53 0.73
ACGTcount: A:0.30, C:0.20, G:0.27, T:0.23
Consensus pattern (25 bp):
GCTCATACGAGCTGAGAATCGGTAA
Found at i:27914583 original size:49 final size:49
Alignment explanation
Indices: 27914467--27914583 Score: 162
Period size: 49 Copynumber: 2.4 Consensus size: 49
27914457 GTATGCTCAT
* * *
27914467 ACGAGCTGTGAATCGGTAAGCTTATACGAGCTGAGAATCGATAAGCTCTC
1 ACGAGCTG-CAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
* * *
27914517 ACGAGATGTAATCGGTAAGCTCATAAGAGCTGAGAATCGGTAAGCTCTC
1 ACGAGCTGCAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
*
27914566 ACGAGCTGCAATTGGTAA
1 ACGAGCTGCAATCGGTAA
27914584 TCCCTAATGA
Statistics
Matches: 59, Mismatches: 8, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 52 0.88
50 7 0.12
ACGTcount: A:0.32, C:0.19, G:0.26, T:0.23
Consensus pattern (49 bp):
ACGAGCTGCAATCGGTAAGCTCATAAGAGCTGAGAATCGATAAGCTCTC
Done.