Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55462051
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.32
Warning! 2780933 characters in sequence are not A, C, G, or T
File 99 of 163
Found at i:31959481 original size:28 final size:27
Alignment explanation
Indices: 31959449--31959503 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 27
31959439 TCAAAACCCC
31959449 CTTAGTCGTAAATAA-TATAAGATAAAAT
1 CTTAGT-G-AAATAAGTATAAGATAAAAT
31959477 CTTAGTGAAATAAGGTATAAGATAAAA
1 CTTAGTGAAATAA-GTATAAGATAAAA
31959504 AAAAATGAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
26 6 0.24
27 1 0.04
28 18 0.72
ACGTcount: A:0.51, C:0.05, G:0.15, T:0.29
Consensus pattern (27 bp):
CTTAGTGAAATAAGTATAAGATAAAAT
Found at i:31962787 original size:81 final size:81
Alignment explanation
Indices: 31962695--31962862 Score: 300
Period size: 81 Copynumber: 2.1 Consensus size: 81
31962685 TCAATTCATG
*
31962695 AAGATCCATTGAAGCATAAGAGTTTGTTCATCCTTGTTTACAAAATCTTTAACAATAAGGAAGAA
1 AAGATCCATTGAAGCATAAGAGTTAGTTCATCCTTGTTTACAAAATCTTTAACAATAAGGAAGAA
*
31962760 AGAAAGCTGTCACACT
66 AGAAAGCTATCACACT
* *
31962776 AAGATCCATTGAAGCATAAGAGTTAGTTCATCTTTGTTTACAAAATCTTTAATAATAAGGAAGAA
1 AAGATCCATTGAAGCATAAGAGTTAGTTCATCCTTGTTTACAAAATCTTTAACAATAAGGAAGAA
31962841 AGAAAGCTATCACACT
66 AGAAAGCTATCACACT
31962857 AAGATC
1 AAGATC
31962863 TAACCTAAAA
Statistics
Matches: 83, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
81 83 1.00
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (81 bp):
AAGATCCATTGAAGCATAAGAGTTAGTTCATCCTTGTTTACAAAATCTTTAACAATAAGGAAGAA
AGAAAGCTATCACACT
Found at i:31963152 original size:22 final size:22
Alignment explanation
Indices: 31963089--31963136 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
31963079 TTTCACTTGT
31963089 CAGGATTAGGTATTGCGATACC
1 CAGGATTAGGTATTGCGATACC
31963111 CAGGATTAGGTATTGCGATACC
1 CAGGATTAGGTATTGCGATACC
31963133 CAGG
1 CAGG
31963137 TTTGAGTATC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (22 bp):
CAGGATTAGGTATTGCGATACC
Found at i:31966278 original size:45 final size:44
Alignment explanation
Indices: 31966155--31966317 Score: 220
Period size: 45 Copynumber: 3.6 Consensus size: 44
31966145 NNNNNNNNNN
* *
31966155 GAATACTGTTACTGTTACTGTTACCGACTCGGCACTTTGTGTGTC
1 GAATACTGTTACTGTTACTGTTA-CGATTCAGCACTTTGTGTGTC
31966200 GAATAC-GTTACTGTTACTGTTATCGATTCAGCACTTTGTGTGTC
1 GAATACTGTTACTGTTACTGTTA-CGATTCAGCACTTTGTGTGTC
* * *
31966244 GAATACTGTTACCGTTACTGTTACAGATTTAGCACTTTGTGTGTT
1 GAATACTGTTACTGTTACTGTTAC-GATTCAGCACTTTGTGTGTC
* *
31966289 GAATACTGTTACTGCTACCGTTACTGATT
1 GAATACTGTTACTGTTACTGTTAC-GATT
31966318 ACTGTATACT
Statistics
Matches: 106, Mismatches: 10, Indels: 4
0.88 0.08 0.03
Matches are distributed among these distances:
44 42 0.40
45 64 0.60
ACGTcount: A:0.21, C:0.19, G:0.20, T:0.40
Consensus pattern (44 bp):
GAATACTGTTACTGTTACTGTTACGATTCAGCACTTTGTGTGTC
Found at i:31969033 original size:25 final size:25
Alignment explanation
Indices: 31968939--31969057 Score: 98
Period size: 25 Copynumber: 4.8 Consensus size: 25
31968929 CGGACACACT
* * *
31968939 ACAGCTCGTATGAGCTTACTGATTT
1 ACAGCTCGTATGAGCATACCGATTC
* * * *
31968964 GCAACTCGTGA-GAGCTTACTGATTC
1 ACAGCTCGT-ATGAGCATACCGATTC
* *
31968989 TCAGCTCGTATGAGCTTACCGATTC
1 ACAGCTCGTATGAGCATACCGATTC
*
31969014 ACAGCTCGTGA-GAGCATACCAATTC
1 ACAGCTCGT-ATGAGCATACCGATTC
* *
31969039 ATACCTCGTATGAGCATAC
1 ACAGCTCGTATGAGCATAC
31969058 ATGTATACGA
Statistics
Matches: 79, Mismatches: 11, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
24 2 0.03
25 75 0.95
26 2 0.03
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (25 bp):
ACAGCTCGTATGAGCATACCGATTC
Found at i:31969047 original size:50 final size:50
Alignment explanation
Indices: 31968943--31969053 Score: 134
Period size: 50 Copynumber: 2.2 Consensus size: 50
31968933 CACACTACAG
* ** * ** *
31968943 CTCGTATGAGCTTACTGATTTGCAACTCGTGAGAGCTTACTGATTCTCAG
1 CTCGTATGAGCTTACCGATTCACAACTCGTGAGAGCATACCAATTCTCAC
*
31968993 CTCGTATGAGCTTACCGATTCACAGCTCGTGAGAGCATACCAATTCAT-AC
1 CTCGTATGAGCTTACCGATTCACAACTCGTGAGAGCATACCAATTC-TCAC
31969043 CTCGTATGAGC
1 CTCGTATGAGC
31969054 ATACATGTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
50 51 0.98
51 1 0.02
ACGTcount: A:0.24, C:0.25, G:0.21, T:0.30
Consensus pattern (50 bp):
CTCGTATGAGCTTACCGATTCACAACTCGTGAGAGCATACCAATTCTCAC
Found at i:31971498 original size:21 final size:21
Alignment explanation
Indices: 31971448--31971518 Score: 63
Period size: 21 Copynumber: 3.4 Consensus size: 21
31971438 TTGTGTTTAC
* * *
31971448 TTTCCGTTTAGCTCTCACGAG
1 TTTCCGTTTAACTCTAATGAG
* *
31971469 CTTCTGTTTAACTC-ATATGAG
1 TTTCCGTTTAACTCTA-ATGAG
* *
31971490 TTTCCGTTTAACCCTAATGGG
1 TTTCCGTTTAACTCTAATGAG
31971511 TTTCCGTT
1 TTTCCGTT
31971519 CAGCTCCTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
21 38 0.97
22 1 0.03
ACGTcount: A:0.17, C:0.24, G:0.17, T:0.42
Consensus pattern (21 bp):
TTTCCGTTTAACTCTAATGAG
Found at i:31971554 original size:42 final size:43
Alignment explanation
Indices: 31971484--31971625 Score: 152
Period size: 42 Copynumber: 3.4 Consensus size: 43
31971474 GTTTAACTCA
* *
31971484 TATGAGTTTCC-GTTTAACCCTAATGGGTTTCCGTTCAGCTCCT
1 TATGAGCTTCCTGTTTAACCCTTATGGGTTTCCGTTCAGCT-CT
*
31971527 T-TGAGCTT-TTGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
1 TATGAGCTTCCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
* * * *
31971568 TATGAGCTTCCT-TTCAACCCTTACGGGTTTCTGTTTAG-TACT
1 TATGAGCTTCCTGTTTAACCCTTATGGGTTTCCGTTCAGCT-CT
*
31971610 TATGTGCTT-CTGTTTA
1 TATGAGCTTCCTGTTTA
31971626 GCCTTCGGGC
Statistics
Matches: 84, Mismatches: 10, Indels: 11
0.80 0.10 0.10
Matches are distributed among these distances:
41 6 0.07
42 76 0.90
43 2 0.02
ACGTcount: A:0.15, C:0.23, G:0.18, T:0.44
Consensus pattern (43 bp):
TATGAGCTTCCTGTTTAACCCTTATGGGTTTCCGTTCAGCTCT
Found at i:31971571 original size:21 final size:21
Alignment explanation
Indices: 31971484--31971598 Score: 81
Period size: 21 Copynumber: 5.5 Consensus size: 21
31971474 GTTTAACTCA
* *
31971484 TATGAGTTTCCGTTTAACCCT
1 TATGGGTTTCCGTTCAACCCT
* *
31971505 AATGGGTTTCCGTTCAGCTCCT
1 TATGGGTTTCCGTTCAAC-CCT
* * *
31971527 T-TGAGCTTT-TGTTTAACCCT
1 TATG-GGTTTCCGTTCAACCCT
* *
31971547 TATGGGTTTCCGTTCAGCTCT
1 TATGGGTTTCCGTTCAACCCT
* * *
31971568 TATGAGCTTCCTTTCAACCCT
1 TATGGGTTTCCGTTCAACCCT
*
31971589 TACGGGTTTC
1 TATGGGTTTC
31971599 TGTTTAGTAC
Statistics
Matches: 68, Mismatches: 22, Indels: 8
0.69 0.22 0.08
Matches are distributed among these distances:
20 8 0.12
21 53 0.78
22 7 0.10
ACGTcount: A:0.15, C:0.25, G:0.18, T:0.42
Consensus pattern (21 bp):
TATGGGTTTCCGTTCAACCCT
Found at i:31983149 original size:17 final size:18
Alignment explanation
Indices: 31983127--31983160 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
31983117 TATTTTAGTT
31983127 TTTTTATTTA-ATTTTTC
1 TTTTTATTTATATTTTTC
31983144 TTTTTATTTATATTTTT
1 TTTTTATTTATATTTTT
31983161 GAATTTGTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTATTTATATTTTTC
Found at i:31983355 original size:8 final size:9
Alignment explanation
Indices: 31983332--31983356 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
31983322 TTGTAAAAAT
31983332 AATTTTTTG
1 AATTTTTTG
31983341 AATTTTTTG
1 AATTTTTTG
31983350 AATTTTT
1 AATTTTT
31983357 AAAATTTTAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.00, G:0.08, T:0.68
Consensus pattern (9 bp):
AATTTTTTG
Found at i:31991284 original size:25 final size:25
Alignment explanation
Indices: 31991240--31991287 Score: 71
Period size: 25 Copynumber: 1.9 Consensus size: 25
31991230 AATTTTTTTT
*
31991240 ACAATTTCACTTCTTTAATATATTC
1 ACAATTTCACTTCTTAAATATATTC
31991265 ACAATTTCAC-TCTTAAAATATAT
1 ACAATTTCACTTCTT-AAATATAT
31991288 AAAAAATTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.19
25 17 0.81
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.44
Consensus pattern (25 bp):
ACAATTTCACTTCTTAAATATATTC
Found at i:31996551 original size:22 final size:23
Alignment explanation
Indices: 31996525--31996567 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
31996515 ACTTGAATTT
31996525 TTAAATT-TAAAAAATAAAAAAA
1 TTAAATTCTAAAAAATAAAAAAA
*
31996547 TTAAATTCTTAAAAATAAAAA
1 TTAAATTCTAAAAAATAAAAA
31996568 TGTGTGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 7 0.37
23 12 0.63
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.30
Consensus pattern (23 bp):
TTAAATTCTAAAAAATAAAAAAA
Found at i:31997679 original size:3 final size:3
Alignment explanation
Indices: 31997671--31997695 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
31997661 GGCTCATTCG
31997671 TCT TCT TCT TCT TCT TCT TCT TCT T
1 TCT TCT TCT TCT TCT TCT TCT TCT T
31997696 TTGTGTGCGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TCT
Found at i:32005512 original size:17 final size:18
Alignment explanation
Indices: 32005490--32005524 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
32005480 TGTAAGAACT
*
32005490 AAAAAT-GATTAAATTAA
1 AAAAATGGACTAAATTAA
32005507 AAAAATGGACTAAATTAA
1 AAAAATGGACTAAATTAA
32005525 CAACTTGCAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.63, C:0.03, G:0.09, T:0.26
Consensus pattern (18 bp):
AAAAATGGACTAAATTAA
Found at i:32008007 original size:13 final size:14
Alignment explanation
Indices: 32007989--32008053 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 14
32007979 TGAATCTCGA
32007989 GGTTCAGGGTTT-G
1 GGTTCAGGGTTTAG
* *
32008002 GGTTCAGGATTTAA
1 GGTTCAGGGTTTAG
** *
32008016 ATTTTAGGGTTT-G
1 GGTTCAGGGTTTAG
*
32008029 GGCTCAGGGTTTAG
1 GGTTCAGGGTTTAG
*
32008043 GGTTCAAGGTT
1 GGTTCAGGGTT
32008054 CAAGAGTTTG
Statistics
Matches: 37, Mismatches: 13, Indels: 3
0.70 0.25 0.06
Matches are distributed among these distances:
13 19 0.51
14 18 0.49
ACGTcount: A:0.17, C:0.08, G:0.37, T:0.38
Consensus pattern (14 bp):
GGTTCAGGGTTTAG
Found at i:32012230 original size:34 final size:35
Alignment explanation
Indices: 32012181--32012284 Score: 124
Period size: 36 Copynumber: 3.0 Consensus size: 35
32012171 GATCAGATTA
* *
32012181 AAACACGAGAATTTTTTTAAAACAC-AAGAATTTTGG
1 AAACACGATATTTTTTTTAAAACACGAA-AATTTT-G
*
32012217 AAACAC-A-ATTTTTTTTAAAAAACGAAAATTTATG
1 AAACACGATATTTTTTTTAAAACACGAAAATTT-TG
*
32012251 AAACACGATATTTTTTTGAAAACACGAAAATTTT
1 AAACACGATATTTTTTTTAAAACACGAAAATTTT
32012285 CAAAACACCA
Statistics
Matches: 60, Mismatches: 4, Indels: 9
0.82 0.05 0.12
Matches are distributed among these distances:
34 26 0.43
35 6 0.10
36 28 0.47
ACGTcount: A:0.46, C:0.11, G:0.10, T:0.34
Consensus pattern (35 bp):
AAACACGATATTTTTTTTAAAACACGAAAATTTTG
Found at i:32012284 original size:18 final size:18
Alignment explanation
Indices: 32012180--32012646 Score: 305
Period size: 17 Copynumber: 26.6 Consensus size: 18
32012170 AGATCAGATT
* *
32012180 AAAACACGAGAATTTTTTT
1 AAAACACGA-AAATTTTTG
32012199 AAAACAC-AAGAA-TTTTG
1 AAAACACGAA-AATTTTTG
* ** *
32012216 GAAACAC-AATTTTTTTT
1 AAAACACGAAAATTTTTG
* *
32012233 AAAAAACGAAAATTTATG
1 AAAACACGAAAATTTTTG
**
32012251 -AAACACGATATTTTTTTG
1 AAAACACGA-AAATTTTTG
*
32012269 AAAACACGAAAA-TTTTC
1 AAAACACGAAAATTTTTG
*
32012286 AAAACACCAAAATTTTTG
1 AAAACACGAAAATTTTTG
**
32012304 AAAACACGAGGATTTTTG
1 AAAACACGAAAATTTTTG
* *
32012322 -AAATACGAAAAATTTTG
1 AAAACACGAAAATTTTTG
**
32012339 AAAACACTTAAATTTTTG
1 AAAACACGAAAATTTTTG
*
32012357 AAAACACGGAAATTTTT-
1 AAAACACGAAAATTTTTG
32012374 AAAACAC-AAGAATTTTTG
1 AAAACACGAA-AATTTTTG
*
32012392 -AAACGCGCAAAA-TTTTG
1 AAAACACG-AAAATTTTTG
32012409 AAAACACGAAAATTTTTG
1 AAAACACGAAAATTTTTG
*
32012427 -AAATACGAAAA-TTTT-
1 AAAACACGAAAATTTTTG
*
32012442 ACAAACACAAAAATTTTT-
1 A-AAACACGAAAATTTTTG
*
32012460 AAAACACGACAATTTTTG
1 AAAACACGAAAATTTTTG
* *
32012478 -AAACACGAGAATTTTTC
1 AAAACACGAAAATTTTTG
* *
32012495 AAAACAC-AAATTTTATTAAA
1 AAAACACGAAAATTT-TT--G
* * *
32012515 AAAACATGACAATTTGTG
1 AAAACACGAAAATTTTTG
* * * **
32012533 -AAACACTAGAGTCATTG
1 AAAACACGAAAATTTTTG
* *
32012550 AAAACACGGAAATTTGTG
1 AAAACACGAAAATTTTTG
*
32012568 AAAA-ACGAAATTTTTTG
1 AAAACACGAAAATTTTTG
*
32012585 -AAGCAC-AGAAATTTTTAG
1 AAAACACGA-AAATTTTT-G
32012603 AAAACACGAAAA-TTTTG
1 AAAACACGAAAATTTTTG
*
32012620 -AATCACCG-AAATTTTTG
1 AAAACA-CGAAAATTTTTG
32012637 AAAACACGAA
1 AAAACACGAA
32012647 GATAGCAATG
Statistics
Matches: 342, Mismatches: 74, Indels: 65
0.71 0.15 0.14
Matches are distributed among these distances:
16 15 0.04
17 177 0.52
18 112 0.33
19 25 0.07
20 8 0.02
21 5 0.01
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.29
Consensus pattern (18 bp):
AAAACACGAAAATTTTTG
Found at i:32012302 original size:70 final size:68
Alignment explanation
Indices: 32012228--32012643 Score: 252
Period size: 69 Copynumber: 5.9 Consensus size: 68
32012218 AACACAATTT
* * *
32012228 TTTTTAAAAAACGAAAATTTATGAAACACGATATTTTTTTGAAAACACGAAAATTTTCAAAACAC
1 TTTTTAAAACACGAAAATTTTTGAAACACGA-A-ATTTTTGAAAACACGAAAATTTTCAAAACAC
32012293 CAAAA
64 CAAAA
** * * * * *
32012298 TTTTTGAAAACACGAGGATTTTTGAAATACGAAAAATTTTGAAAACACTTAAATTTTTGAAAACA
1 TTTTT-AAAACACGAAAATTTTTGAAACACG-AAATTTTTGAAAACAC-GAAAATTTTCAAAACA
**
32012363 CGGAAA
63 CCAAAA
* * ** *
32012369 TTTTTAAAACAC-AAGAATTTTTGAAACGCGCAAAATTTTGAAAACACGAAAATTTTTGAAATAC
1 TTTTTAAAACACGAA-AATTTTTGAAACACG-AAATTTTTGAAAACACGAAAATTTTCAAAACAC
*
32012433 GAAAA
64 CAAAA
* * *
32012438 -TTTTACAAACACAAAAATTTTTAAAACACGACAATTTTTG-AAACACGAGAATTTTTCAAAACA
1 TTTTTA-AAACACGAAAATTTTTGAAACACGA-AATTTTTGAAAACACGA-AAATTTTCAAAACA
*
32012501 -CAAAT
63 CCAAAA
* * * * * ** * *
32012506 TTTATTAAAAAAACATGACAATTTGTGAAACACTAGAGTCATTGAAAACACGGAAATTTGTGAAA
1 TTT-TT---AAAACACGAAAATTTTTGAAACACGA-AATTTTTGAAAACACGAAAATTT-TCAAA
* *
32012571 A-ACGAAAT
60 ACACCAAAA
* * * * * *
32012579 TTTTTGAAGCAC-AGAAATTTTTAGAAAACACGAAAATTTTG-AATCACCGAAATTTTTGAAAAC
1 TTTTTAAAACACGA-AAATTTTT-G-AAACACGAAATTTTTGAAAACA-CGAAAATTTTCAAAAC
32012642 AC
62 AC
32012644 GAAGATAGCA
Statistics
Matches: 266, Mismatches: 59, Indels: 42
0.72 0.16 0.11
Matches are distributed among these distances:
68 18 0.07
69 75 0.28
70 70 0.26
71 50 0.19
72 33 0.12
73 20 0.08
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.29
Consensus pattern (68 bp):
TTTTTAAAACACGAAAATTTTTGAAACACGAAATTTTTGAAAACACGAAAATTTTCAAAACACCA
AAA
Found at i:32012309 original size:35 final size:35
Alignment explanation
Indices: 32012178--32012646 Score: 275
Period size: 35 Copynumber: 13.3 Consensus size: 35
32012168 CGAGATCAGA
* *
32012178 TTAAAACACGAGAATTTTTTTAAAACAC-AAGAATTT
1 TTAAAACACGA-AAATTTTTGAAAACACGAA-AATTT
** ** * *
32012214 TGGAAACAC-AATTTTTTTTAAAAAACGAAAATTT
1 TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
* * **
32012248 ATGAAACACGATATTTTTTTGAAAACACGAAAATTT
1 TTAAAACACGA-AAATTTTTGAAAACACGAAAATTT
* * **
32012284 TCAAAACACCAAAATTTTTGAAAACACGAGGATTT
1 TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
* * * **
32012319 TTGAAATACGAAAAATTTTGAAAACACTTAAATTT
1 TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
*
32012354 TTGAAAACACGGAAATTTTT-AAAACAC-AAGAATTT
1 TT-AAAACACGAAAATTTTTGAAAACACGAA-AATTT
* *
32012389 TTGAAACGCGCAAAA-TTTTGAAAACACGAAAATTT
1 TTAAAACACG-AAAATTTTTGAAAACACGAAAATTT
* * *
32012424 TTGAAATACGAAAA-TTTT-ACAAACACAAAAATTT
1 TTAAAACACGAAAATTTTTGA-AAACACGAAAATTT
* *
32012458 TTAAAACACGACAATTTTTG-AAACACGAGAATTT
1 TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
* * * *
32012492 TTCAAAACAC-AAATTTTATTAAAAAAACATGACAATTT
1 TT-AAAACACGAAAATTT-TT--GAAAACACGAAAATTT
* * * * * ** *
32012530 GTGAAACACTAGAGTCATTGAAAACACGGAAATTT
1 TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
* * *
32012565 GTGAAAA-ACGAAATTTTTTG-AAGCAC-AGAAATTT
1 -TTAAAACACGAAAATTTTTGAAAACACGA-AAATTT
*
32012599 TTAGAAAACACGAAAA-TTTTG-AATCACCG-AAATTT
1 TT--AAAACACGAAAATTTTTGAAAACA-CGAAAATTT
32012634 TTGAAAACACGAA
1 TT-AAAACACGAA
32012647 GATAGCAATG
Statistics
Matches: 340, Mismatches: 69, Indels: 50
0.74 0.15 0.11
Matches are distributed among these distances:
33 2 0.01
34 110 0.32
35 143 0.42
36 61 0.18
37 8 0.02
38 16 0.05
ACGTcount: A:0.47, C:0.12, G:0.11, T:0.29
Consensus pattern (35 bp):
TTAAAACACGAAAATTTTTGAAAACACGAAAATTT
Found at i:32012579 original size:16 final size:18
Alignment explanation
Indices: 32012548--32012644 Score: 69
Period size: 16 Copynumber: 5.6 Consensus size: 18
32012538 CTAGAGTCAT
32012548 TGAAAACACGGAAATTTG
1 TGAAAACACGGAAATTTG
*
32012566 TGAAAA-AC-GAAATTTTT
1 TGAAAACACGGAAA-TTTG
* * *
32012583 TG-AAGCACAGAAATTTT
1 TGAAAACACGGAAATTTG
*
32012600 TAGAAAACACGAAAATTT-
1 T-GAAAACACGGAAATTTG
* * *
32012618 TG-AATCACCGAAATTTT
1 TGAAAACACGGAAATTTG
32012635 TGAAAACACG
1 TGAAAACACG
32012645 AAGATAGCAA
Statistics
Matches: 62, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
16 17 0.27
17 17 0.27
18 17 0.27
19 11 0.18
ACGTcount: A:0.45, C:0.12, G:0.15, T:0.27
Consensus pattern (18 bp):
TGAAAACACGGAAATTTG
Found at i:32012914 original size:11 final size:11
Alignment explanation
Indices: 32012898--32012938 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
32012888 ACAAATTGAA
32012898 TTTTTCTTTTC
1 TTTTTCTTTTC
*
32012909 TTTTTCTCTTC
1 TTTTTCTTTTC
*
32012920 TTTTT-TTCT-
1 TTTTTCTTTTC
32012929 TTTTTCTTTT
1 TTTTTCTTTT
32012939 TTCTTCTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
9 5 0.20
10 5 0.20
11 15 0.60
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTCTTTTC
Found at i:32012932 original size:25 final size:24
Alignment explanation
Indices: 32012898--32012945 Score: 71
Period size: 26 Copynumber: 2.0 Consensus size: 24
32012888 ACAAATTGAA
32012898 TTTTTC-TTTTCTTTTTCTCTTCTT
1 TTTTTCTTTTTCTTTTT-TCTTCTT
32012922 TTTTTCTTTTTTCTTTTTTCTTCT
1 TTTTTC-TTTTTCTTTTTTCTTCT
32012946 CTCTTCTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 6 0.27
25 6 0.27
26 10 0.45
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (24 bp):
TTTTTCTTTTTCTTTTTTCTTCTT
Found at i:32013262 original size:7 final size:7
Alignment explanation
Indices: 32013238--32013310 Score: 51
Period size: 7 Copynumber: 10.1 Consensus size: 7
32013228 CGGCTATTAA
*
32013238 TTTTTAT
1 TTTTTCT
*
32013245 TTTTTAT
1 TTTTTCT
32013252 TTTTT-T
1 TTTTTCT
32013258 CTTTTTCT
1 -TTTTTCT
*
32013266 TTCTTCT
1 TTTTTCT
32013273 TCTTCTTCAT
1 T-TT-TTC-T
*
32013283 TCTTTC-
1 TTTTTCT
*
32013289 TTTCTCT
1 TTTTTCT
32013296 TTTTTCT
1 TTTTTCT
32013303 TTTTTCT
1 TTTTTCT
32013310 T
1 T
32013311 CTCCGATCGG
Statistics
Matches: 54, Mismatches: 6, Indels: 12
0.75 0.08 0.17
Matches are distributed among these distances:
6 5 0.09
7 38 0.70
8 5 0.09
9 4 0.07
10 2 0.04
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (7 bp):
TTTTTCT
Found at i:32013308 original size:20 final size:21
Alignment explanation
Indices: 32013252--32013310 Score: 68
Period size: 20 Copynumber: 2.8 Consensus size: 21
32013242 TATTTTTTAT
32013252 TTTTTTC-TTTTTCTTTCTTC
1 TTTTTTCTTTTTTCTTTCTTC
*
32013272 TTCTTCTTCATTCTTTCTTTC-TC
1 TT-TT-TTC-TTTTTTCTTTCTTC
32013295 TTTTTTCTTTTTTCTT
1 TTTTTTCTTTTTTCTT
32013311 CTCCGATCGG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
20 10 0.30
21 5 0.15
22 5 0.15
23 4 0.12
24 9 0.27
ACGTcount: A:0.02, C:0.22, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTTTCTTTTTTCTTTCTTC
Found at i:32013665 original size:29 final size:29
Alignment explanation
Indices: 32013633--32013699 Score: 116
Period size: 29 Copynumber: 2.3 Consensus size: 29
32013623 ATTTAGGGGC
**
32013633 CAAAATGTAATTTCAAAAAGTTGGTGGGT
1 CAAAATGTAATTTCAAAAAGTTCATGGGT
32013662 CAAAATGTAATTTCAAAAAGTTCATGGGT
1 CAAAATGTAATTTCAAAAAGTTCATGGGT
32013691 CAAAATGTA
1 CAAAATGTA
32013700 TTTTTTGATT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.42, C:0.09, G:0.19, T:0.30
Consensus pattern (29 bp):
CAAAATGTAATTTCAAAAAGTTCATGGGT
Found at i:32013719 original size:15 final size:16
Alignment explanation
Indices: 32013699--32013728 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
32013689 GTCAAAATGT
32013699 ATTTTTTG-ATTTTTG
1 ATTTTTTGAATTTTTG
32013714 ATTTTTTGAATTTTT
1 ATTTTTTGAATTTTT
32013729 TTTGAATTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.17, C:0.00, G:0.10, T:0.73
Consensus pattern (16 bp):
ATTTTTTGAATTTTTG
Found at i:32013731 original size:11 final size:11
Alignment explanation
Indices: 32013715--32013742 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
32013705 TGATTTTTGA
32013715 TTTTTTGAATT
1 TTTTTTGAATT
32013726 TTTTTTGAATT
1 TTTTTTGAATT
32013737 TTTTTT
1 TTTTTT
32013743 AAATATATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.14, C:0.00, G:0.07, T:0.79
Consensus pattern (11 bp):
TTTTTTGAATT
Found at i:32016954 original size:76 final size:76
Alignment explanation
Indices: 32013923--32016953 Score: 5414
Period size: 76 Copynumber: 39.9 Consensus size: 76
32013913 CGCTCGGCAT
* * *
32013923 GTGACCCGAGGCTCAACTCACCTCTTGTATTACGAGTTGA-TTTT-AAAAA--ACAGAAATTTAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAA-TT--
**
32013984 AAGAAATACCTCGGC
63 AA-AAATACCTTAGC
* * * * * * *
32013999 ATGTG-TCCGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTG-AAAA--ATAGAAG
1 --GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGA---TTTTTGAAAAACGACAGAAA
*
32014060 TTAAAACTACCTTAGC
61 TTAAAAATACCTTAGC
* * *
32014076 GTGACCCGAGGCTCCACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
* *
32014141 AATAACTCAGC
66 AATACCTTAGC
* * * * *
32014152 GGGACCCGAGGCTCAACTCACCTCTTGTATTACGAGTTGA-TTTT-CAAAA--ACAGAAATTTAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAA-TT--
**
32014213 AAGAAATACCTCGGC
63 AA-AAATACCTTAGC
* * * * * * *
32014228 ATGTG-TCCGAGGCTCAATTCACCTCTCGCAATATGAGTTGATTTTTTTTG-AAAA--ATAGAAG
1 --GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGA---TTTTTGAAAAACGACAGAAA
*
32014289 TTAAAACTACCTTAGC
61 TTAAAAATACCTTAGC
* * *
32014305 GTGACCCGAGGCTCCACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACAACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014370 AATACCTTAGC
66 AATACCTTAGC
*
32014381 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAA-AACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
*
32014445 AATACCTCAGC
66 AATACCTTAGC
*
32014456 GTGACCCGAGGCTCAACTCACCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014521 AATACCTTAGC
66 AATACCTTAGC
32014532 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014597 AATACCTTAGC
66 AATACCTTAGC
32014608 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014673 AATACCTTAGC
66 AATACCTTAGC
32014684 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014749 AATACCTTAGC
66 AATACCTTAGC
32014760 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014825 AATACCTTAGC
66 AATACCTTAGC
32014836 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014901 AATACCTTAGC
66 AATACCTTAGC
32014912 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32014977 AATACCTTAGC
66 AATACCTTAGC
32014988 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015053 AATACCTTAGC
66 AATACCTTAGC
32015064 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015129 AATACCTTAGC
66 AATACCTTAGC
32015140 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015205 AATACCTTAGC
66 AATACCTTAGC
32015216 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015281 AATACCTTAGC
66 AATACCTTAGC
32015292 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015357 AATACCTTAGC
66 AATACCTTAGC
32015368 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015433 AATACCTTAGC
66 AATACCTTAGC
32015444 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015509 AATACCTTAGC
66 AATACCTTAGC
32015520 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015585 AATACCTTAGC
66 AATACCTTAGC
32015596 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015661 AATACCTTAGC
66 AATACCTTAGC
32015672 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015737 AATACCTTAGC
66 AATACCTTAGC
32015748 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015813 AATACCTTAGC
66 AATACCTTAGC
32015824 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015889 AATACCTTAGC
66 AATACCTTAGC
32015900 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32015965 AATACCTTAGC
66 AATACCTTAGC
32015976 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016041 AATACCTTAGC
66 AATACCTTAGC
32016052 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016117 AATACCTTAGC
66 AATACCTTAGC
32016128 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016193 AATACCTTAGC
66 AATACCTTAGC
32016204 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016269 AATACCTTAGC
66 AATACCTTAGC
32016280 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016345 AATACCTTAGC
66 AATACCTTAGC
32016356 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016421 AATACCTTAGC
66 AATACCTTAGC
32016432 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016497 AATACCTTAGC
66 AATACCTTAGC
32016508 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016573 AATACCTTAGC
66 AATACCTTAGC
32016584 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016649 AATACCTTAGC
66 AATACCTTAGC
32016660 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016725 AATACCTTAGC
66 AATACCTTAGC
32016736 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016801 AATACCTTAGC
66 AATACCTTAGC
32016812 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016877 AATACCTTAGC
66 AATACCTTAGC
*
32016888 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAA-AACAGAAATTAAA
1 GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
32016952 AA
66 AA
32016954 AAATTTCTTG
Statistics
Matches: 2872, Mismatches: 56, Indels: 53
0.96 0.02 0.02
Matches are distributed among these distances:
72 7 0.00
73 14 0.00
74 12 0.00
75 99 0.03
76 2623 0.91
77 78 0.03
78 9 0.00
80 4 0.00
81 26 0.01
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28
Consensus pattern (76 bp):
GTGACCCGAGGCTCAACTCGCCTCTCGTATTATGAGTTGATTTTTGAAAAACGACAGAAATTAAA
AATACCTTAGC
Found at i:32029492 original size:20 final size:20
Alignment explanation
Indices: 32029467--32029504 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
32029457 CGTGATCCGA
32029467 TTAAAACACGAGAATTTTTT
1 TTAAAACACGAGAATTTTTT
32029487 TTAAAACACGAGAATTTT
1 TTAAAACACGAGAATTTT
32029505 GGAAACACAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.42, C:0.11, G:0.11, T:0.37
Consensus pattern (20 bp):
TTAAAACACGAGAATTTTTT
Found at i:32029520 original size:34 final size:34
Alignment explanation
Indices: 32029478--32029682 Score: 132
Period size: 34 Copynumber: 5.8 Consensus size: 34
32029468 TAAAACACGA
*
32029478 GAATTTTTTTTAAAACACGAGAATTTTGGAAACAC
1 GAATTTTTTTTAAAACACGAAAATTTT-GAAACAC
*
32029513 -AATTTTTTTTAAAAAACGAAAATTTATGAAACAC
1 GAATTTTTTTTAAAACACGAAAATTT-TGAAACAC
* *
32029547 GAGATTTTTTTTTGAAAACACAAAAATTTTCAAAACACC
1 GA-A-TTTTTTTT-AAAACACGAAAATTTT-GAAACA-C
* * * * *
32029586 GAA-ATTTTTGACAACACGAGGATTTTTGAAACAC
1 GAATTTTTTTTAAAACACGA-AAATTTTGAAACAC
* * * *
32029620 GGGAA-TTTTCTGAAAACATGTAAAATTTTGAAA-ATTG
1 --GAATTTTTTTTAAAACACG-AAAATTTTGAAACA--C
*
32029657 GAA-TTTTTTGAAAACACGAAAATTTT
1 GAATTTTTTTTAAAACACGAAAATTTT
32029683 TCTGATTTTT
Statistics
Matches: 136, Mismatches: 21, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
34 39 0.29
35 31 0.23
36 34 0.25
37 10 0.07
38 19 0.14
39 3 0.02
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (34 bp):
GAATTTTTTTTAAAACACGAAAATTTTGAAACAC
Found at i:32029682 original size:17 final size:17
Alignment explanation
Indices: 32029555--32029683 Score: 89
Period size: 18 Copynumber: 7.3 Consensus size: 17
32029545 ACGAGATTTT
*
32029555 TTTTTGAAAACACAAAA
1 TTTTTGAAAACACGAAA
* *
32029572 ATTTTCAAAACACCGAAA
1 TTTTTGAAAACA-CGAAA
* *
32029590 TTTTTGACAACACGAGGA
1 TTTTTGAAAACACGA-AA
*
32029608 TTTTTG-AAACACGGGAA
1 TTTTTGAAAACAC-GAAA
*
32029625 TTTTCTGAAAACATGTAAA
1 TTTT-TGAAAACACG-AAA
* *** *
32029644 ATTTTGAAAATTGGAAT
1 TTTTTGAAAACACGAAA
32029661 TTTTTGAAAACACGAAAA
1 TTTTTGAAAACACG-AAA
32029679 TTTTT
1 TTTTT
32029684 CTGATTTTTT
Statistics
Matches: 83, Mismatches: 22, Indels: 13
0.70 0.19 0.11
Matches are distributed among these distances:
17 35 0.42
18 38 0.46
19 10 0.12
ACGTcount: A:0.42, C:0.12, G:0.13, T:0.33
Consensus pattern (17 bp):
TTTTTGAAAACACGAAA
Found at i:32029809 original size:181 final size:181
Alignment explanation
Indices: 32029609--32029946 Score: 393
Period size: 186 Copynumber: 1.8 Consensus size: 181
32029599 ACACGAGGAT
* * **
32029609 TTTTGAAACACGGGAA-TTTTCTGAAAACATGTAAAATTTTGAAA-ATTGGAATTTTTTGAAAAC
1 TTTTGAAACACGAGAATTTTTC-GAAAACACG-AAAATTTTGAAACAGAGGAATTTTTTGAAAAC
* *
32029672 ACGAAAATTTTTCTG-AT-TTTTTTA-TT-AAGCACGTATCGTA-TTTAACACTAATCGGTGATA
64 ACG--AATTTTT-TGAATATTTTTTATTTAAAGCACGTATCG-AGTTTAACACAAACCGGTGATA
*
32029732 TTCACTCAACAGAGCAATGAAATCAACGAATTAGTGTCAAATCGATTCGTTACTTTA
125 TTCACCCAACAGAGCAATGAAATCAACGAATTAGTGTCAAATCGATTCGTTACTTTA
* * * *
32029789 TTTTGAAAACACGAGAATTTTTCGAAGACACGAAAATTTTGAAACCCGAGGATTTTTTTGAAAAT
1 TTTTG-AAACACGAGAATTTTTCGAAAACACGAAAATTTTGAAA-CAGAGGAATTTTTTGAAAAC
**
32029854 ACGAATTTTTTGAATATTTTTTATTTTTAAAAGGGCGTATCGAGTTTAACACAAACCGGTGATAT
64 ACGAATTTTTTGAATATTTTTTA--TTT-AAAGCACGTATCGAGTTTAACACAAACCGGTGATAT
* *
32029919 TCACCCAACATAGCGATGAAATCAACGA
126 TCACCCAACAGAGCAATGAAATCAACGA
32029947 TTTTATGATA
Statistics
Matches: 131, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
179 2 0.02
180 26 0.20
181 24 0.18
182 22 0.17
184 2 0.02
185 1 0.01
186 54 0.41
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.34
Consensus pattern (181 bp):
TTTTGAAACACGAGAATTTTTCGAAAACACGAAAATTTTGAAACAGAGGAATTTTTTGAAAACAC
GAATTTTTTGAATATTTTTTATTTAAAGCACGTATCGAGTTTAACACAAACCGGTGATATTCACC
CAACAGAGCAATGAAATCAACGAATTAGTGTCAAATCGATTCGTTACTTTA
Found at i:32030201 original size:6 final size:6
Alignment explanation
Indices: 32030192--32030226 Score: 52
Period size: 6 Copynumber: 5.7 Consensus size: 6
32030182 TGAATTTTTG
*
32030192 TTTTCT TTTTCT CTTTTCT TTTCCT TTTTCT TTTT
1 TTTTCT TTTTCT -TTTTCT TTTTCT TTTTCT TTTT
32030227 TCTTCTCTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
6 20 0.77
7 6 0.23
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTCT
Found at i:32030218 original size:19 final size:18
Alignment explanation
Indices: 32030187--32030230 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
32030177 CAAATTGAAT
*
32030187 TTTTGTTTTCTTTTTCTC
1 TTTTCTTTTCTTTTTCTC
*
32030205 TTTTCTTTTCCTTTTTCTT
1 TTTTCTTTT-CTTTTTCTC
32030224 TTTTCTT
1 TTTTCTT
32030231 CTCTCTTCTT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 8 0.35
19 15 0.65
ACGTcount: A:0.00, C:0.18, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTCTTTTCTTTTTCTC
Found at i:32030530 original size:7 final size:7
Alignment explanation
Indices: 32030520--32030578 Score: 50
Period size: 7 Copynumber: 8.3 Consensus size: 7
32030510 ATTATTTTAT
32030520 TTTTTTC
1 TTTTTTC
32030527 -TTTTTC
1 TTTTTTC
32030533 TTTCTTTC
1 TTT-TTTC
32030541 TTCTTCTTC
1 TT-TT-TTC
*
32030550 CTTTTTC
1 TTTTTTC
*
32030557 -TTTCTC
1 TTTTTTC
*
32030563 CTTTTTC
1 TTTTTTC
32030570 TTTTTTC
1 TTTTTTC
32030577 TT
1 TT
32030579 CTCCGATCGG
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 11 0.26
7 18 0.42
8 9 0.21
9 5 0.12
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (7 bp):
TTTTTTC
Found at i:32030556 original size:20 final size:20
Alignment explanation
Indices: 32030533--32030582 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
32030523 TTTCTTTTTC
*
32030533 TTTCTTTCTTCTTCTTCCTT
1 TTTCTTTCTCCTTCTTCCTT
* *
32030553 TTTCTTTCTCCTTTTTCTTT
1 TTTCTTTCTCCTTCTTCCTT
32030573 TTTC-TTCTCC
1 TTTCTTTCTCC
32030583 GATCGGCCTT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
19 6 0.22
20 21 0.78
ACGTcount: A:0.00, C:0.30, G:0.00, T:0.70
Consensus pattern (20 bp):
TTTCTTTCTCCTTCTTCCTT
Found at i:32030564 original size:13 final size:13
Alignment explanation
Indices: 32030526--32030572 Score: 55
Period size: 13 Copynumber: 3.8 Consensus size: 13
32030516 TTATTTTTTT
32030526 CTTTTTCTTTCT-
1 CTTTTTCTTTCTC
*
32030538 -TTCTTC-TTCTTC
1 CTTTTTCTTTC-TC
32030550 CTTTTTCTTTCTC
1 CTTTTTCTTTCTC
32030563 CTTTTTCTTT
1 CTTTTTCTTT
32030573 TTTCTTCTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 7
0.76 0.05 0.18
Matches are distributed among these distances:
10 3 0.10
11 6 0.21
13 17 0.59
14 3 0.10
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (13 bp):
CTTTTTCTTTCTC
Found at i:32030934 original size:29 final size:29
Alignment explanation
Indices: 32030902--32030981 Score: 126
Period size: 29 Copynumber: 2.8 Consensus size: 29
32030892 AAATTTTGAG
32030902 AAAATTTAGGGGTCAAAATGTAATTTCAA
1 AAAATTTAGGGGTCAAAATGTAATTTCAA
*
32030931 AAAA-TTGGTGGGTCAAAATGTAATTTCAA
1 AAAATTTAG-GGGTCAAAATGTAATTTCAA
*
32030960 AAAGTTTAGGGGTCAAAATGTA
1 AAAATTTAGGGGTCAAAATGTA
32030982 TTTTTTGATT
Statistics
Matches: 46, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
28 3 0.07
29 40 0.87
30 3 0.07
ACGTcount: A:0.42, C:0.06, G:0.21, T:0.30
Consensus pattern (29 bp):
AAAATTTAGGGGTCAAAATGTAATTTCAA
Found at i:32035558 original size:21 final size:22
Alignment explanation
Indices: 32035523--32035572 Score: 66
Period size: 21 Copynumber: 2.3 Consensus size: 22
32035513 TATATTTTAT
*
32035523 ATATCATTATATAATTTATTAA
1 ATATAATTATATAATTTATTAA
* *
32035545 ATATAATT-TATAATTTTTTAT
1 ATATAATTATATAATTTATTAA
32035566 ATATAAT
1 ATATAAT
32035573 NNNNNNNNNN
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
21 18 0.72
22 7 0.28
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (22 bp):
ATATAATTATATAATTTATTAA
Found at i:32035855 original size:24 final size:23
Alignment explanation
Indices: 32035823--32035870 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
32035813 NNNNNNNNNN
* * *
32035823 AATTTTTTATATATCATTATATTT
1 AATTATTTAAATATAATT-TATTT
32035847 AATTATTTAAATATAATTTATTT
1 AATTATTTAAATATAATTTATTT
32035870 A
1 A
32035871 TATATATAAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 6 0.29
24 15 0.71
ACGTcount: A:0.40, C:0.02, G:0.00, T:0.58
Consensus pattern (23 bp):
AATTATTTAAATATAATTTATTT
Found at i:32036602 original size:20 final size:19
Alignment explanation
Indices: 32036577--32036636 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 19
32036567 GTTAGCGTTT
32036577 GAATCGAGTTAAACAACAAA
1 GAATCGA-TTAAACAACAAA
* * *
32036597 GAATCGATTTAAGCAATAAT
1 GAATCGA-TTAAACAACAAA
32036617 GAATCGATTCAAACAACAAA
1 GAATCGATT-AAACAACAAA
32036637 AAGAATTGGG
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
19 2 0.06
20 30 0.94
ACGTcount: A:0.52, C:0.15, G:0.13, T:0.20
Consensus pattern (19 bp):
GAATCGATTAAACAACAAA
Found at i:32036671 original size:21 final size:22
Alignment explanation
Indices: 32036577--32036714 Score: 62
Period size: 21 Copynumber: 6.6 Consensus size: 22
32036567 GTTAGCGTTT
32036577 GAATCGAGTT-AAACAAC--AAA
1 GAATCGA-TTCAAACAACAAAAA
* * * *
32036597 GAATCGATTTAAGC-A-ATAAT
1 GAATCGATTCAAACAACAAAAA
32036617 GAATCGATTCAAACAACAAAAA
1 GAATCGATTCAAACAACAAAAA
* ** *
32036639 GAATTGGGTCAATCAA-AAAAA
1 GAATCGATTCAAACAACAAAAA
* *
32036660 TAATCGATTCAAATAAGC--AAA
1 GAATCGATTCAAACAA-CAAAAA
* *
32036681 GAATCGATTTAAGATAAC--AAA
1 GAATCGATTCAA-ACAACAAAAA
*
32036702 TAATCGATTCAAA
1 GAATCGATTCAAA
32036715 AGAAACAACA
Statistics
Matches: 90, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
19 3 0.03
20 25 0.28
21 43 0.48
22 19 0.21
ACGTcount: A:0.52, C:0.13, G:0.13, T:0.22
Consensus pattern (22 bp):
GAATCGATTCAAACAACAAAAA
Found at i:32060535 original size:53 final size:53
Alignment explanation
Indices: 32060440--32060540 Score: 159
Period size: 53 Copynumber: 1.9 Consensus size: 53
32060430 GGGGTGTTAC
*
32060440 AGACCATATAGTGTAAGATCGTAACTGGTGGGTTATGGCATCATATGGGAATA
1 AGACCATATAGTGTAAGATCGTAACTGGTGGGTTATGACATCATATGGGAATA
* *
32060493 AGACTATATTGTGTAAGA-CAGTAACTGGTGGGTTATGACATCATATGG
1 AGACCATATAGTGTAAGATC-GTAACTGGTGGGTTATGACATCATATGG
32060541 AAAATAACAA
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
52 1 0.02
53 43 0.98
ACGTcount: A:0.32, C:0.11, G:0.28, T:0.30
Consensus pattern (53 bp):
AGACCATATAGTGTAAGATCGTAACTGGTGGGTTATGACATCATATGGGAATA
Found at i:32060820 original size:61 final size:61
Alignment explanation
Indices: 32060665--32060927 Score: 285
Period size: 61 Copynumber: 4.3 Consensus size: 61
32060655 TAAAGGACGT
* * * * *
32060665 CTTTGTGGCATAACTTTGGACAAGAAAGCCTTTGTGGCGAGAAGTGGATGTAAATGACAAC
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGGATGTAAAGGACAAC
* * * * * * * *
32060726 CTTTGTGGCATAACTCGAGATAGGATAGACTTTGAGGCGAGTACTAGATGTAAAGGATAAC
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGGATGTAAAGGACAAC
* * * *
32060787 CTTTGTGGCATATCTCTAGACAAGAAAGCCTTTGTGACGAGTATTGGATGTAAAGGACAGC
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGGATGTAAAGGACAAC
* * * * * * **
32060848 CATTGTGACACAACTCTAGACAGGAAAGCCTCTGTGGCGAGTACTGGATGTAAGGGA-TGC
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGGATGTAAAGGACAAC
*
32060908 CTTTGTGGCAAAACTCTAGA
1 CTTTGTGGCATAACTCTAGA
32060928 AAGGTAAGCC
Statistics
Matches: 164, Mismatches: 38, Indels: 1
0.81 0.19 0.00
Matches are distributed among these distances:
60 19 0.12
61 145 0.88
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (61 bp):
CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGGCGAGTACTGGATGTAAAGGACAAC
Found at i:32060887 original size:122 final size:121
Alignment explanation
Indices: 32060665--32060927 Score: 328
Period size: 122 Copynumber: 2.2 Consensus size: 121
32060655 TAAAGGACGT
* * * * *
32060665 CTTTGTGGCATAACTTTGGACAAGAAAGCCTTTGTGGCGAGAAGTGGATGTAAATGACAACCTTT
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGACGAGAAGTGGATGTAAAGGACAACCATT
* * * * *
32060730 GTGGCATAACTCGAGATAGGATAGACTTTGAGGCGAGTACTAGATGTAAAGGATAAC
66 GTGACACAACTCGAGACAGGAAAGACTCTGAGGCGAGTACTAGATGTAAAGGAT-AC
* * * *
32060787 CTTTGTGGCATATCTCTAGACAAGAAAGCCTTTGTGACGAGTATTGGATGTAAAGGACAGCCATT
1 CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGACGAGAAGTGGATGTAAAGGACAACCATT
* * * * * *
32060852 GTGACACAACTCTAGACAGGAAAGCCTCTGTGGCGAGTACTGGATGTAAGGGATGC
66 GTGACACAACTCGAGACAGGAAAGACTCTGAGGCGAGTACTAGATGTAAAGGATAC
*
32060908 CTTTGTGGCAAAACTCTAGA
1 CTTTGTGGCATAACTCTAGA
32060928 AAGGTAAGCC
Statistics
Matches: 119, Mismatches: 22, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
121 19 0.16
122 100 0.84
ACGTcount: A:0.30, C:0.16, G:0.27, T:0.26
Consensus pattern (121 bp):
CTTTGTGGCATAACTCTAGACAAGAAAGCCTTTGTGACGAGAAGTGGATGTAAAGGACAACCATT
GTGACACAACTCGAGACAGGAAAGACTCTGAGGCGAGTACTAGATGTAAAGGATAC
Found at i:32061159 original size:146 final size:146
Alignment explanation
Indices: 32060878--32061177 Score: 379
Period size: 146 Copynumber: 2.1 Consensus size: 146
32060868 CAGGAAAGCC
* *
32060878 TCTGTGGCGAGTACTGGATGTAAGGGATGCCTTTGTGGCAAAACTCTAGAAAGGTAAGCCCTTAT
1 TCTGTGGTGAGTACTGGATGTAAGGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTAT
** * * **
32060943 GACAATGTCTATTTAAGAACGTCTTTGTGGAAAATCTTTGAAAAGAAACAACTCTATGATGATCT
66 GACAACCTCTATTTAAGAACGCCTTTGTGGAAAATCTCTGAAAAGAAACAACTCTATGACAATCT
32061008 ATGTTAAAGAAAAGTCT
131 ATGTTAAAGAAAAGT-T
* * * *
32061025 T-TGTGGTGAGTACTGGATGTAAGGGATGCCTTTATGGCAAAACTCTGGAAATGTAAGTCCTTGT
1 TCTGTGGTGAGTACTGGATGTAAGGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTAT
* * * * * * *
32061089 GACAACCTTTGTTTAAGAACGCCTTTGT-GACAAATCTCTGAAACGAAACACCTTTGTGGCAATC
66 GACAACCTCTATTTAAGAACGCCTTTGTGGA-AAATCTCTGAAAAGAAACAACTCTATGACAATC
* *
32061153 TCTGTTAAAGGAAAGTT
130 TATGTTAAAGAAAAGTT
32061170 TCTGTGGT
1 TCTGTGGT
32061178 AATTTTCGTA
Statistics
Matches: 130, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
145 4 0.03
146 125 0.96
147 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.31
Consensus pattern (146 bp):
TCTGTGGTGAGTACTGGATGTAAGGGATGCCTTTATGGCAAAACTCTAGAAAGGTAAGCCCTTAT
GACAACCTCTATTTAAGAACGCCTTTGTGGAAAATCTCTGAAAAGAAACAACTCTATGACAATCT
ATGTTAAAGAAAAGTT
Found at i:32063250 original size:42 final size:42
Alignment explanation
Indices: 32063203--32063306 Score: 115
Period size: 42 Copynumber: 2.5 Consensus size: 42
32063193 GTGCTAAACG
*
32063203 GAAACCCATAAGGGTTGAA-TGGAAGCTCATAAA-AGCTGAACA
1 GAAACCCATAAGGGTTAAACT-GAAGCTCA-AAAGAGCTGAACA
* **
32063245 GAAACCCATAGGGGTTAAACTGAAGCTCAAAAGAGCTGAATT
1 GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACA
*
32063287 GAAACCTATTAA-GGTTAAAC
1 GAAACCCA-TAAGGGTTAAAC
32063307 GGAAACTTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 6
0.82 0.09 0.09
Matches are distributed among these distances:
41 3 0.06
42 47 0.89
43 3 0.06
ACGTcount: A:0.42, C:0.16, G:0.22, T:0.19
Consensus pattern (42 bp):
GAAACCCATAAGGGTTAAACTGAAGCTCAAAAGAGCTGAACA
Found at i:32073644 original size:33 final size:33
Alignment explanation
Indices: 32073565--32073633 Score: 102
Period size: 33 Copynumber: 2.1 Consensus size: 33
32073555 TGCAAGAGAA
* *
32073565 GGCAAGCTGTGGACATCAGGCGGACAGGGGGAT
1 GGCAAGCTGTGGACATCAAGCGAACAGGGGGAT
* *
32073598 GGCAAGCTGTGGACATCAAGTGAATAGGGGGAT
1 GGCAAGCTGTGGACATCAAGCGAACAGGGGGAT
32073631 GGC
1 GGC
32073634 GAATTGTGGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.26, C:0.16, G:0.43, T:0.14
Consensus pattern (33 bp):
GGCAAGCTGTGGACATCAAGCGAACAGGGGGAT
Found at i:32073654 original size:23 final size:23
Alignment explanation
Indices: 32073628--32073690 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
32073618 TGAATAGGGG
** *
32073628 GATGGCGAATTGTGGACGTGGGA
1 GATGGCGAGCTGTGGACGCGGGA
32073651 GATGGCGAGCTGTGGACGCGGGA
1 GATGGCGAGCTGTGGACGCGGGA
*
32073674 GAAGGCGAGCTGTGGAC
1 GATGGCGAGCTGTGGAC
32073691 ATTATGCGGA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.21, C:0.14, G:0.49, T:0.16
Consensus pattern (23 bp):
GATGGCGAGCTGTGGACGCGGGA
Found at i:32073711 original size:56 final size:56
Alignment explanation
Indices: 32073651--32073779 Score: 179
Period size: 56 Copynumber: 2.3 Consensus size: 56
32073641 GGACGTGGGA
* *
32073651 GATGGCGAGCTGTGGACGCGGGAGAAGGCGAGCTGTGGACATTATGCGGAC-AGGAG
1 GATGGTGAGCTGTGGACGCGGGAGAAGGCGAGCTGTGGACATTAGGCGGACTAGG-G
* * * *
32073707 GATGGTGAGTTATGGATGTGGGAGAAGGCGAGCTGTGGACATTAGGCGGACTAGGG
1 GATGGTGAGCTGTGGACGCGGGAGAAGGCGAGCTGTGGACATTAGGCGGACTAGGG
*
32073763 AATGGTGAGCTGTGGAC
1 GATGGTGAGCTGTGGAC
32073780 AGCAGAGGGA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
56 59 0.95
57 3 0.05
ACGTcount: A:0.23, C:0.12, G:0.46, T:0.19
Consensus pattern (56 bp):
GATGGTGAGCTGTGGACGCGGGAGAAGGCGAGCTGTGGACATTAGGCGGACTAGGG
Found at i:32076450 original size:21 final size:21
Alignment explanation
Indices: 32076426--32076483 Score: 71
Period size: 23 Copynumber: 2.7 Consensus size: 21
32076416 AATCCTTCGA
32076426 AAACTTTATTCTTTTCAATTG
1 AAACTTTATTCTTTTCAATTG
* *
32076447 AAACTTCTTATTATTTTTAATTG
1 AAAC-T-TTATTCTTTTCAATTG
*
32076470 AAACTTAATTCTTT
1 AAACTTTATTCTTT
32076484 CTATAATTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
21 11 0.35
22 2 0.06
23 18 0.58
ACGTcount: A:0.31, C:0.12, G:0.03, T:0.53
Consensus pattern (21 bp):
AAACTTTATTCTTTTCAATTG
Found at i:32076463 original size:23 final size:23
Alignment explanation
Indices: 32076431--32076475 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
32076421 TTCGAAAACT
*
32076431 TTATTCTTTTCAATTGAAACTTC
1 TTATTATTTTCAATTGAAACTTC
*
32076454 TTATTATTTTTAATTGAAACTT
1 TTATTATTTTCAATTGAAACTT
32076476 AATTCTTTCT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.29, C:0.11, G:0.04, T:0.56
Consensus pattern (23 bp):
TTATTATTTTCAATTGAAACTTC
Found at i:32076716 original size:16 final size:16
Alignment explanation
Indices: 32076695--32076726 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
32076685 ATGGACACTT
32076695 GTGAAATGCAAGATTC
1 GTGAAATGCAAGATTC
*
32076711 GTGAAATGCAGGATTC
1 GTGAAATGCAAGATTC
32076727 TTATACGTGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.34, C:0.12, G:0.28, T:0.25
Consensus pattern (16 bp):
GTGAAATGCAAGATTC
Found at i:32076773 original size:45 final size:45
Alignment explanation
Indices: 32076709--32076801 Score: 177
Period size: 45 Copynumber: 2.1 Consensus size: 45
32076699 AATGCAAGAT
*
32076709 TCGTGAAATGCAGGATTCTTATACGTGGTTAGACCTGTTCATGAG
1 TCGTGAAATGCAGGATTCTTATACGTGGTTAGACATGTTCATGAG
32076754 TCGTGAAATGCAGGATTCTTATACGTGGTTAGACATGTTCATGAG
1 TCGTGAAATGCAGGATTCTTATACGTGGTTAGACATGTTCATGAG
32076799 TCG
1 TCG
32076802 GGCCATCCGC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (45 bp):
TCGTGAAATGCAGGATTCTTATACGTGGTTAGACATGTTCATGAG
Found at i:32084607 original size:31 final size:32
Alignment explanation
Indices: 32084552--32084612 Score: 115
Period size: 32 Copynumber: 1.9 Consensus size: 32
32084542 AATTACAAGA
32084552 GTAATTGAATCCTAATAAAAACTCTTTAAAGG
1 GTAATTGAATCCTAATAAAAACTCTTTAAAGG
32084584 GTAATTGAATCCTAAT-AAAACTCTTTAAA
1 GTAATTGAATCCTAATAAAAACTCTTTAAA
32084613 ATTATCTAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 13 0.45
32 16 0.55
ACGTcount: A:0.44, C:0.13, G:0.10, T:0.33
Consensus pattern (32 bp):
GTAATTGAATCCTAATAAAAACTCTTTAAAGG
Found at i:32096264 original size:31 final size:32
Alignment explanation
Indices: 32096229--32096293 Score: 123
Period size: 31 Copynumber: 2.1 Consensus size: 32
32096219 ATTAATTTTG
32096229 TAAATACATCTAACAGTTAAC-TGTAATAAGT
1 TAAATACATCTAACAGTTAACTTGTAATAAGT
32096260 TAAATACATCTAACAGTTAACTTGTAATAAGT
1 TAAATACATCTAACAGTTAACTTGTAATAAGT
32096292 TA
1 TA
32096294 TCCTTATTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
31 21 0.64
32 12 0.36
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (32 bp):
TAAATACATCTAACAGTTAACTTGTAATAAGT
Found at i:32098947 original size:17 final size:18
Alignment explanation
Indices: 32098917--32098955 Score: 53
Period size: 17 Copynumber: 2.2 Consensus size: 18
32098907 ATTTTTTGAG
* *
32098917 TTTTAAATCTTTTATATT
1 TTTTAAATCCTTTAAATT
32098935 TTTTAAA-CCTTTAAATT
1 TTTTAAATCCTTTAAATT
32098952 TTTT
1 TTTT
32098956 TTTCAGTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 12 0.63
18 7 0.37
ACGTcount: A:0.28, C:0.08, G:0.00, T:0.64
Consensus pattern (18 bp):
TTTTAAATCCTTTAAATT
Found at i:32099064 original size:19 final size:20
Alignment explanation
Indices: 32099026--32099066 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
32099016 TTTTATACTG
32099026 AAAATTTTAGAATATTATAT
1 AAAATTTTAGAATATTATAT
* *
32099046 AAAATTTT-TAATGTTATAT
1 AAAATTTTAGAATATTATAT
32099065 AA
1 AA
32099067 TTTTCTTGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 11 0.58
20 8 0.42
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (20 bp):
AAAATTTTAGAATATTATAT
Found at i:32100700 original size:38 final size:38
Alignment explanation
Indices: 32100635--32100708 Score: 105
Period size: 38 Copynumber: 1.9 Consensus size: 38
32100625 GTGGTGGGGG
*
32100635 AGTGTTAGAGTGATTTTAAGAGAAAAATATGGGATTGA
1 AGTGTTAGAGTGACTTTAAGAGAAAAATATGGGATTGA
* *
32100673 AGTGTTGGAGTGACTTT-AGAAGGAAAATATGGGATT
1 AGTGTTAGAGTGACTTTAAG-AGAAAAATATGGGATT
32100709 ATGGAGTTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
37 2 0.06
38 30 0.94
ACGTcount: A:0.36, C:0.01, G:0.31, T:0.31
Consensus pattern (38 bp):
AGTGTTAGAGTGACTTTAAGAGAAAAATATGGGATTGA
Found at i:32106075 original size:74 final size:74
Alignment explanation
Indices: 32105988--32106356 Score: 510
Period size: 74 Copynumber: 4.9 Consensus size: 74
32105978 AACTAATAGT
*
32105988 GGATAATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATA
1 GGAT-ATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATA
32106053 TATAAAGTTC
65 TATAAAGTTC
* *
32106063 GGTTATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATAT
1 GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATAT
32106128 ATAAAGTTC
66 ATAAAGTTC
* *
32106137 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGCATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATG-T-TA--TAT
32106202 ATATATAAAGTTC
62 ATATATAAAGTTC
* *
32106215 GGATATATATATGTATATACATGAATAAATTCTTGAATTTAGTTACAAGTATGTATGTTATATTT
1 GG--ATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATG-T-TA--T
32106280 ATATGTATATAAAGTTC
60 ATA--TATATAAAGTTC
* * *
32106297 GGATATATGTGTATATACATGAATAAGTT-TTGAATTTAGTT-AATGT-TGAATGTTATATAT
1 GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATAT
32106357 GTTTACAAGA
Statistics
Matches: 274, Mismatches: 12, Indels: 20
0.90 0.04 0.07
Matches are distributed among these distances:
71 1 0.00
73 4 0.01
74 121 0.44
75 6 0.02
76 3 0.01
77 5 0.02
78 21 0.08
79 12 0.04
80 87 0.32
82 14 0.05
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (74 bp):
GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATAT
ATAAAGTTC
Found at i:32106145 original size:148 final size:154
Alignment explanation
Indices: 32105988--32106356 Score: 531
Period size: 154 Copynumber: 2.4 Consensus size: 154
32105978 AACTAATAGT
* *
32105988 GGATAATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTATGTTATATATA
1 GGAT-ATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGAATGTTATATATA
* *
32106053 TATAAAGTTCGG-T-TATATATGTATATACATGTATAAGTTCTTGAATTTAGTTAAAAGTATGTA
65 TATAAAGTTCGGATATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTA
32106116 TG-T-TA-TATA-TATATAAAGTTC
130 TGTTATATTATAGTATATAAAGTTC
* *
32106137 GGATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGCATGTTATATTTAT
1 GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGAATG-T-TA--TAT
*
32106202 ATATATAAAGTTCGGATATATATATGTATATACATGAATAAATTCTTGAATTTAGTTACAAGTAT
62 ATATATAAAGTTCGGATATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTAT
32106267 GTATGTTATATTTATATGTATATAAAGTTC
127 GTATGTTATA-TTATA-GTATATAAAGTTC
* *
32106297 GGATATATGTGTATATACATGAATAAGTT-TTGAATTTAGTT-AATGT-TGAATGTTATATAT
1 GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGAATGTTATATAT
32106357 GTTTACAAGA
Statistics
Matches: 198, Mismatches: 10, Indels: 20
0.87 0.04 0.09
Matches are distributed among these distances:
148 48 0.24
149 5 0.03
150 2 0.01
152 18 0.09
153 6 0.03
154 49 0.25
155 3 0.02
156 3 0.02
157 5 0.03
158 8 0.04
159 12 0.06
160 39 0.20
ACGTcount: A:0.38, C:0.04, G:0.15, T:0.44
Consensus pattern (154 bp):
GGATATATATGTATATACATGAATAAGTTCTTGAATTTAGTTAAAAGTATGAATGTTATATATAT
ATAAAGTTCGGATATATATATGTATATACATGAATAAATTCTTGAATTTAGTTAAAAGTATGTAT
GTTATATTATAGTATATAAAGTTC
Found at i:32107136 original size:41 final size:41
Alignment explanation
Indices: 32107070--32107230 Score: 216
Period size: 41 Copynumber: 3.9 Consensus size: 41
32107060 CGATGTACTG
* *
32107070 AATCAGGTTTTAAAACCTAGCAGGCTAAGTGCCGGTGATCTA
1 AATCAGGTTAT-AAGCCTAGCAGGCTAAGTGCCGGTGATCTA
* * *
32107112 AACCAGGTTATAAGCCTAGCAGGCTAAGTGCCAGTGATCTG
1 AATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTA
* *
32107153 AATCAGGCTATAAGCCTAGCAGGCTAAGTGCCGATGATCTA
1 AATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTA
* *
32107194 AATCAGGCTT-TAATCCTAACAGGCTAAGTGCCGGTGA
1 AATCAGG-TTATAAGCCTAGCAGGCTAAGTGCCGGTGA
32107231 ATCTGTTTAA
Statistics
Matches: 104, Mismatches: 14, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
41 94 0.90
42 10 0.10
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.24
Consensus pattern (41 bp):
AATCAGGTTATAAGCCTAGCAGGCTAAGTGCCGGTGATCTA
Found at i:32107444 original size:34 final size:35
Alignment explanation
Indices: 32107396--32107469 Score: 98
Period size: 34 Copynumber: 2.1 Consensus size: 35
32107386 GATATATATA
* *
32107396 TATATATGTATGCATTCGGCATATGTGGATT-ATAAG
1 TATATATG-ATGCATTCGGCACATGT-AATTGATAAG
32107432 TATATATG-TGCATTCGGCACATGTAATTGATAAG
1 TATATATGATGCATTCGGCACATGTAATTGATAAG
32107466 TATA
1 TATA
32107470 AATAAATGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
33 3 0.09
34 24 0.69
36 8 0.23
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (35 bp):
TATATATGATGCATTCGGCACATGTAATTGATAAG
Found at i:32111713 original size:43 final size:43
Alignment explanation
Indices: 32111653--32111766 Score: 183
Period size: 43 Copynumber: 2.7 Consensus size: 43
32111643 CATATACGAA
*
32111653 GCCAATGTTCCAGACATGGTCTTACACGTTATCTCACTTCGAT
1 GCCAATGTACCAGACATGGTCTTACACGTTATCTCACTTCGAT
*
32111696 GCCAATGTACCAAACATGGTCTTACACGTTATCTCACTTCGAT
1 GCCAATGTACCAGACATGGTCTTACACGTTATCTCACTTCGAT
* * *
32111739 TCCAATGTCCCAGATATGGTCTTACACG
1 GCCAATGTACCAGACATGGTCTTACACG
32111767 AAATCACATC
Statistics
Matches: 65, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
43 65 1.00
ACGTcount: A:0.25, C:0.28, G:0.16, T:0.31
Consensus pattern (43 bp):
GCCAATGTACCAGACATGGTCTTACACGTTATCTCACTTCGAT
Found at i:32116173 original size:38 final size:38
Alignment explanation
Indices: 32116122--32116197 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
32116112 TGACTTAAAG
32116122 CATTACCAACAACATTGGCCTTTCCCGGATGGTAGTCA
1 CATTACCAACAACATTGGCCTTTCCCGGATGGTAGTCA
*
32116160 CATTAGCAACAACATTGGCCTTTCCCGGATGGTAGTCA
1 CATTACCAACAACATTGGCCTTTCCCGGATGGTAGTCA
32116198 ATCACTAGCT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (38 bp):
CATTACCAACAACATTGGCCTTTCCCGGATGGTAGTCA
Found at i:32122904 original size:19 final size:19
Alignment explanation
Indices: 32122880--32122990 Score: 159
Period size: 19 Copynumber: 5.8 Consensus size: 19
32122870 AATTTTTGAG
*
32122880 GATATGCAATCTTATATAT
1 GATATGCAATCTTAGATAT
*
32122899 GATATGCAATCCTAGATAT
1 GATATGCAATCTTAGATAT
32122918 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
32122937 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
* ** *
32122956 GATGTATAATCTTTGATAT
1 GATATGCAATCTTAGATAT
*
32122975 GATATGTAATCTTAGA
1 GATATGCAATCTTAGA
32122991 GATACCCTTT
Statistics
Matches: 82, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 82 1.00
ACGTcount: A:0.36, C:0.10, G:0.15, T:0.39
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:32130001 original size:21 final size:21
Alignment explanation
Indices: 32129941--32130025 Score: 91
Period size: 21 Copynumber: 4.0 Consensus size: 21
32129931 TGATCAGTAA
* *
32129941 ACGACACAT-AAGTGCTTGAA
1 ACGACACATAAAGTGCCTGAT
** * *
32129961 ACGACACACGAGGTGTCTGAT
1 ACGACACATAAAGTGCCTGAT
32129982 ACGACACATAAAGTGCCTGATGT
1 ACGACACATAAAGTGCCTGA--T
32130005 ACGACACATAAAGTGCCTGAT
1 ACGACACATAAAGTGCCTGAT
32130026 CGGCAAAGCC
Statistics
Matches: 53, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
20 8 0.15
21 24 0.45
23 21 0.40
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.20
Consensus pattern (21 bp):
ACGACACATAAAGTGCCTGAT
Found at i:32130010 original size:23 final size:23
Alignment explanation
Indices: 32129981--32130025 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
32129971 AGGTGTCTGA
32129981 TACGACACATAAAGTGCCTGATG
1 TACGACACATAAAGTGCCTGATG
32130004 TACGACACATAAAGTGCCTGAT
1 TACGACACATAAAGTGCCTGAT
32130026 CGGCAAAGCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.36, C:0.22, G:0.20, T:0.22
Consensus pattern (23 bp):
TACGACACATAAAGTGCCTGATG
Found at i:32132041 original size:33 final size:33
Alignment explanation
Indices: 32132004--32132072 Score: 138
Period size: 33 Copynumber: 2.1 Consensus size: 33
32131994 GGAACCCGAA
32132004 ATCAATCTAACATTGTCTCACAAAAATTCATAT
1 ATCAATCTAACATTGTCTCACAAAAATTCATAT
32132037 ATCAATCTAACATTGTCTCACAAAAATTCATAT
1 ATCAATCTAACATTGTCTCACAAAAATTCATAT
32132070 ATC
1 ATC
32132073 TCATAATATG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.42, C:0.22, G:0.03, T:0.33
Consensus pattern (33 bp):
ATCAATCTAACATTGTCTCACAAAAATTCATAT
Found at i:32138161 original size:186 final size:186
Alignment explanation
Indices: 32137847--32138219 Score: 746
Period size: 186 Copynumber: 2.0 Consensus size: 186
32137837 TTATTTTTGT
32137847 TATTCTTATAAAATTTAATTTCAAAATGGGACAAACCTAACATGCAAATAAGTCAAAAGTTTAAC
1 TATTCTTATAAAATTTAATTTCAAAATGGGACAAACCTAACATGCAAATAAGTCAAAAGTTTAAC
32137912 TAGATGTCATCATACTCTCATGCGGCACTCTTTTTTCAGCCACTTAGGACGCTTCAATCTGATCC
66 TAGATGTCATCATACTCTCATGCGGCACTCTTTTTTCAGCCACTTAGGACGCTTCAATCTGATCC
32137977 CTCAATTTGTTAGGAGACACCAAAATTTTATTAATTTTTTTAGATTTCTAGGGTGG
131 CTCAATTTGTTAGGAGACACCAAAATTTTATTAATTTTTTTAGATTTCTAGGGTGG
32138033 TATTCTTATAAAATTTAATTTCAAAATGGGACAAACCTAACATGCAAATAAGTCAAAAGTTTAAC
1 TATTCTTATAAAATTTAATTTCAAAATGGGACAAACCTAACATGCAAATAAGTCAAAAGTTTAAC
32138098 TAGATGTCATCATACTCTCATGCGGCACTCTTTTTTCAGCCACTTAGGACGCTTCAATCTGATCC
66 TAGATGTCATCATACTCTCATGCGGCACTCTTTTTTCAGCCACTTAGGACGCTTCAATCTGATCC
32138163 CTCAATTTGTTAGGAGACACCAAAATTTTATTAATTTTTTTAGATTTCTAGGGTGG
131 CTCAATTTGTTAGGAGACACCAAAATTTTATTAATTTTTTTAGATTTCTAGGGTGG
32138219 T
1 T
32138220 GTGTAATAGC
Statistics
Matches: 187, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
186 187 1.00
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (186 bp):
TATTCTTATAAAATTTAATTTCAAAATGGGACAAACCTAACATGCAAATAAGTCAAAAGTTTAAC
TAGATGTCATCATACTCTCATGCGGCACTCTTTTTTCAGCCACTTAGGACGCTTCAATCTGATCC
CTCAATTTGTTAGGAGACACCAAAATTTTATTAATTTTTTTAGATTTCTAGGGTGG
Found at i:32141043 original size:3 final size:3
Alignment explanation
Indices: 32141035--32141068 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
32141025 TATTAAAATG
32141035 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
32141069 AGAAGTAGGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:32155024 original size:88 final size:89
Alignment explanation
Indices: 32154875--32155052 Score: 349
Period size: 88 Copynumber: 2.0 Consensus size: 89
32154865 CACCTAAATT
32154875 TATTAAATGTTATACAAATTACGCGAAATATTGTCAGTATTAGAGGAAATTCATGTTAAAAAAAT
1 TATTAAATGTTATACAAATTACGCGAAATATTGTCAGTATTAGAGGAAATTCATGTTAAAAAAAT
32154940 AGTTATTGAGCTAT-CTTAACGAA
66 AGTTATTGAGCTATGCTTAACGAA
32154963 TATTAAATGTTATACAAATTACGCGAAATATTGTCAGTATTAGAGGAAATTCATGTTAAAAAAAT
1 TATTAAATGTTATACAAATTACGCGAAATATTGTCAGTATTAGAGGAAATTCATGTTAAAAAAAT
32155028 AGTTATTGAGCTATGCTTAACGAA
66 AGTTATTGAGCTATGCTTAACGAA
32155052 T
1 T
32155053 TAATATTAAA
Statistics
Matches: 89, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
88 79 0.89
89 10 0.11
ACGTcount: A:0.42, C:0.09, G:0.15, T:0.34
Consensus pattern (89 bp):
TATTAAATGTTATACAAATTACGCGAAATATTGTCAGTATTAGAGGAAATTCATGTTAAAAAAAT
AGTTATTGAGCTATGCTTAACGAA
Found at i:32161459 original size:24 final size:26
Alignment explanation
Indices: 32161432--32161523 Score: 91
Period size: 25 Copynumber: 3.7 Consensus size: 26
32161422 GTACATGTAT
* *
32161432 GCTCATACGAGCTG-TAAAT-GGTAA
1 GCTCATACGAGCTGAAAAATCGATAA
* *
32161456 GCTCCTCCGAGCTGAAAAATCGATAA
1 GCTCATACGAGCTGAAAAATCGATAA
* **
32161482 GCTCATACGAGTTG-AGTATCGATAA
1 GCTCATACGAGCTGAAAAATCGATAA
*
32161507 GCTCATAAGAGCTGAAA
1 GCTCATACGAGCTGAAA
32161524 CCGGTAACTC
Statistics
Matches: 53, Mismatches: 12, Indels: 4
0.77 0.17 0.06
Matches are distributed among these distances:
24 12 0.23
25 25 0.47
26 16 0.30
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.23
Consensus pattern (26 bp):
GCTCATACGAGCTGAAAAATCGATAA
Found at i:32168561 original size:13 final size:13
Alignment explanation
Indices: 32168518--32168566 Score: 57
Period size: 13 Copynumber: 3.8 Consensus size: 13
32168508 ATTTGTTTTT
32168518 ATTT-TTATGTTA
1 ATTTCTTATGTTA
*
32168530 ATTTCTTAT-TTT
1 ATTTCTTATGTTA
*
32168542 ATATTCTGATGTTA
1 AT-TTCTTATGTTA
32168556 ATTTCTTATGT
1 ATTTCTTATGT
32168567 CCCTTGTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 5
0.77 0.10 0.13
Matches are distributed among these distances:
12 8 0.27
13 18 0.60
14 4 0.13
ACGTcount: A:0.22, C:0.06, G:0.08, T:0.63
Consensus pattern (13 bp):
ATTTCTTATGTTA
Found at i:32174414 original size:16 final size:17
Alignment explanation
Indices: 32174389--32174425 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
32174379 CGCTCTTCAA
32174389 CTCCTGCTTTCCCAC-T
1 CTCCTGCTTTCCCACTT
*
32174405 CTCCTTCTTTCCCACTT
1 CTCCTGCTTTCCCACTT
32174422 CTCC
1 CTCC
32174426 CGGAAAAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.05, C:0.51, G:0.03, T:0.41
Consensus pattern (17 bp):
CTCCTGCTTTCCCACTT
Found at i:32179714 original size:131 final size:132
Alignment explanation
Indices: 32179576--32179840 Score: 491
Period size: 131 Copynumber: 2.0 Consensus size: 132
32179566 ATATTAATAA
32179576 TTTTAAAAAGTAAAATAATTTTAAAAAA-TTCTATTAT-TATTTAATTCTAGTCTGATGTCCTTA
1 TTTTAAAAAGTAAAATAA-TTTAAAAAACTTCTATTATATA-TTAATTCTAGTCTGATGTCCTTA
32179639 GTAGTCATTTTTTATTCTCACCTCACTGCTATAGTTGCGTTTGAATCCAAACACACA-TCCACCA
64 GTAGTCATTTTTTATTCTCACCTCACTGCTATAGTTGCGTTTGAATCCAAACACACACTCCACCA
32179703 TTGT
129 TTGT
32179707 TTTTAAAAAGTAAAATAATTTAAAAAACTTCTATTATATATTAATTCTAGTCTGATGTCCTTAGT
1 TTTTAAAAAGTAAAATAATTTAAAAAACTTCTATTATATATTAATTCTAGTCTGATGTCCTTAGT
32179772 AGTCATTTTTTATTCTCACCTCACTGCTATAGTTGCGTTTGAATCCAAACACACACTCCACCATT
66 AGTCATTTTTTATTCTCACCTCACTGCTATAGTTGCGTTTGAATCCAAACACACACTCCACCATT
32179837 GT
131 GT
32179839 TT
1 TT
32179841 CTAATCTCAC
Statistics
Matches: 131, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
130 9 0.07
131 107 0.82
132 15 0.11
ACGTcount: A:0.32, C:0.18, G:0.09, T:0.41
Consensus pattern (132 bp):
TTTTAAAAAGTAAAATAATTTAAAAAACTTCTATTATATATTAATTCTAGTCTGATGTCCTTAGT
AGTCATTTTTTATTCTCACCTCACTGCTATAGTTGCGTTTGAATCCAAACACACACTCCACCATT
GT
Found at i:32179878 original size:21 final size:21
Alignment explanation
Indices: 32179854--32179894 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32179844 ATCTCACTAC
*
32179854 TACAGTATCCAATCTCACCTT
1 TACAGTAACCAATCTCACCTT
*
32179875 TACAGTAACTAATCTCACCT
1 TACAGTAACCAATCTCACCT
32179895 CCACCGCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.05, T:0.32
Consensus pattern (21 bp):
TACAGTAACCAATCTCACCTT
Found at i:32189412 original size:19 final size:17
Alignment explanation
Indices: 32189380--32189431 Score: 61
Period size: 19 Copynumber: 3.0 Consensus size: 17
32189370 TCTAAAATTT
*
32189380 ATTAAAAA-TCTAAAAA
1 ATTAAAAATTATAAAAA
*
32189396 ATTAAAATATATATAAAAT
1 ATTAAAA-AT-TATAAAAA
32189415 ATTAAAAATTATAAAAA
1 ATTAAAAATTATAAAAA
32189432 TCAAAATCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
16 7 0.23
17 8 0.27
18 2 0.07
19 13 0.43
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (17 bp):
ATTAAAAATTATAAAAA
Found at i:32189955 original size:23 final size:23
Alignment explanation
Indices: 32189912--32189955 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
32189902 ATGATGGCAT
*
32189912 CACATCTTAAATATTTATTGGAC
1 CACATCTTAAATATTCATTGGAC
* *
32189935 CACATGTTAAATATTCGTTGG
1 CACATCTTAAATATTCATTGG
32189956 TTTACATAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.39
Consensus pattern (23 bp):
CACATCTTAAATATTCATTGGAC
Found at i:32196826 original size:19 final size:19
Alignment explanation
Indices: 32196790--32196828 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
32196780 ATTTTCAATT
* **
32196790 TTTAAAATAATTTTTTAAA
1 TTTAAAAAAATTAATTAAA
32196809 TTTAAAAAAATTAATTAAA
1 TTTAAAAAAATTAATTAAA
32196828 T
1 T
32196829 GTTGATGTTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (19 bp):
TTTAAAAAAATTAATTAAA
Found at i:32198310 original size:21 final size:19
Alignment explanation
Indices: 32198273--32198311 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
32198263 TCTAAATCTC
*
32198273 TGTTTAACTATGTTTTCTT
1 TGTTTAACTATATTTTCTT
32198292 TGTTGTAACTTATATTTTCT
1 TGTT-TAAC-TATATTTTCT
32198312 CGATAGTCTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 4 0.24
21 9 0.53
ACGTcount: A:0.18, C:0.10, G:0.10, T:0.62
Consensus pattern (19 bp):
TGTTTAACTATATTTTCTT
Found at i:32207537 original size:22 final size:22
Alignment explanation
Indices: 32207502--32207543 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
32207492 TGCTTGTTGC
* * *
32207502 GAAATTTAATTATAACTTTTTA
1 GAAATTAAAATATAAATTTTTA
32207524 GAAATTAAAATATAAATTTT
1 GAAATTAAAATATAAATTTT
32207544 ATTATATTAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.45
Consensus pattern (22 bp):
GAAATTAAAATATAAATTTTTA
Found at i:32208010 original size:81 final size:82
Alignment explanation
Indices: 32207916--32208078 Score: 319
Period size: 81 Copynumber: 2.0 Consensus size: 82
32207906 TTTATACTTC
32207916 CAAAAAATTAACCGAACTGGCCGACCCTGACCAAATACTTATATATTATAATATTATTTATTAAG
1 CAAAAAATTAACCGAACTGGCCGACCCTGACCAAATACTTATATATTATAATATTATTTATTAAG
32207981 TTCGA-TAATTCGATTA
66 TTCGATTAATTCGATTA
32207997 CAAAAAATTAACCGAACTGGCCGACCCTGACCAAATACTTATATATTATAATATTATTTATTAAG
1 CAAAAAATTAACCGAACTGGCCGACCCTGACCAAATACTTATATATTATAATATTATTTATTAAG
32208062 TTCGATTAATTCGATTA
66 TTCGATTAATTCGATTA
32208079 ATTGACTGAT
Statistics
Matches: 81, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
81 70 0.86
82 11 0.14
ACGTcount: A:0.39, C:0.17, G:0.10, T:0.34
Consensus pattern (82 bp):
CAAAAAATTAACCGAACTGGCCGACCCTGACCAAATACTTATATATTATAATATTATTTATTAAG
TTCGATTAATTCGATTA
Found at i:32209496 original size:53 final size:54
Alignment explanation
Indices: 32209429--32209534 Score: 151
Period size: 53 Copynumber: 2.0 Consensus size: 54
32209419 TCAATACTAA
*
32209429 AAAAAAAAAGTTAAACAATTTTGTTCAAAACCGAAAATATTGTATATTACAAAC
1 AAAAAAAAAGTTAAACAATTTTGTTCAAAACCGAAAACATTGTATATTACAAAC
* * * * *
32209483 AAAAAATAA-TTAAACAATTTTGTTCAATACCGACAACATTGTGTCTTACAAA
1 AAAAAAAAAGTTAAACAATTTTGTTCAAAACCGAAAACATTGTATATTACAAA
32209535 TTGAAAAATA
Statistics
Matches: 46, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 38 0.83
54 8 0.17
ACGTcount: A:0.50, C:0.13, G:0.08, T:0.29
Consensus pattern (54 bp):
AAAAAAAAAGTTAAACAATTTTGTTCAAAACCGAAAACATTGTATATTACAAAC
Found at i:32212708 original size:3 final size:3
Alignment explanation
Indices: 32212700--32212793 Score: 170
Period size: 3 Copynumber: 31.0 Consensus size: 3
32212690 GTTCTCAGGT
*
32212700 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC ATC TTC TTC TTC TTC TTC
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
32212748 TTC TTC TTTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
1 TTC TTC -TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC
32212794 ATACTAGATA
Statistics
Matches: 88, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
3 85 0.97
4 3 0.03
ACGTcount: A:0.01, C:0.33, G:0.00, T:0.66
Consensus pattern (3 bp):
TTC
Found at i:32213290 original size:29 final size:29
Alignment explanation
Indices: 32213234--32213291 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
32213224 AAGAAAAAGC
* *
32213234 GTAAACATATTGGGCCATTTAATCAAAAA
1 GTAAAAATATTGGGCCATTTAATAAAAAA
* *
32213263 GTAAAAATATTGGGTCATTTATTAAAAAA
1 GTAAAAATATTGGGCCATTTAATAAAAAA
32213292 ATGGAAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.47, C:0.09, G:0.14, T:0.31
Consensus pattern (29 bp):
GTAAAAATATTGGGCCATTTAATAAAAAA
Found at i:32214070 original size:16 final size:16
Alignment explanation
Indices: 32214049--32214103 Score: 67
Period size: 16 Copynumber: 3.4 Consensus size: 16
32214039 GTTTGGTTCA
*
32214049 CTGTAATGGAATAAGG
1 CTGTAATTGAATAAGG
*
32214065 CTGTAATTGAATAGGG
1 CTGTAATTGAATAAGG
*
32214081 TTGTAATTGAAT-AGAG
1 CTGTAATTGAATAAG-G
32214097 CTGTAAT
1 CTGTAAT
32214104 CAGTAATTCA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
15 1 0.03
16 32 0.97
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (16 bp):
CTGTAATTGAATAAGG
Found at i:32214173 original size:44 final size:46
Alignment explanation
Indices: 32214089--32214175 Score: 126
Period size: 44 Copynumber: 1.9 Consensus size: 46
32214079 GGTTGTAATT
*
32214089 GAATAGAGCTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATG
1 GAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATG
*
32214135 GAATAGAACTGTAAT-AGT-ATTC-TTGTGTTTGGTTGAATGGA
1 GAATAGAACTGTAATCAGTAATTCAAT-TGTTTGGTTGAATGGA
32214176 GTGATGTTGT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
43 1 0.03
44 20 0.53
45 3 0.08
46 14 0.37
ACGTcount: A:0.31, C:0.06, G:0.26, T:0.37
Consensus pattern (46 bp):
GAATAGAACTGTAATCAGTAATTCAATTGTTTGGTTGAATGGAATG
Found at i:32214328 original size:20 final size:20
Alignment explanation
Indices: 32214299--32214341 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
32214289 CTATACAGAT
32214299 AATATATAATTTAATTAAAA
1 AATATATAATTTAATTAAAA
*
32214319 AATATGTAATTTAATTAAAA
1 AATATATAATTTAATTAAAA
32214339 AAT
1 AAT
32214342 TCTTAAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.02, T:0.40
Consensus pattern (20 bp):
AATATATAATTTAATTAAAA
Found at i:32218957 original size:51 final size:51
Alignment explanation
Indices: 32218895--32219001 Score: 196
Period size: 51 Copynumber: 2.1 Consensus size: 51
32218885 TTAAATAATA
* *
32218895 ATTATATATTTATATTTATATTAAATCACTAACTCAATAATAATTAAACCC
1 ATTATACATTTATATTTATATTAAATCACTAACCCAATAATAATTAAACCC
32218946 ATTATACATTTATATTTATATTAAATCACTAACCCAATAATAATTAAACCC
1 ATTATACATTTATATTTATATTAAATCACTAACCCAATAATAATTAAACCC
32218997 ATTAT
1 ATTAT
32219002 CCAAAACCTA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.45, C:0.15, G:0.00, T:0.40
Consensus pattern (51 bp):
ATTATACATTTATATTTATATTAAATCACTAACCCAATAATAATTAAACCC
Found at i:32220667 original size:50 final size:50
Alignment explanation
Indices: 32220607--32220817 Score: 325
Period size: 50 Copynumber: 4.2 Consensus size: 50
32220597 AATTAAATTA
*
32220607 GGTTAGGGTTTTTATTTAAGGGTTCAGAGCTTTTAATTAAATTAGGCTAG
1 GGTTAGGGTTTTTATTTAAGGGTTTAGAGCTTTTAATTAAATTAGGCTAG
* * *
32220657 GGTTAGGGTTTTTATTTAAGGGTTTA-AGGTTTTTAATTGAATTAGGTTAG
1 GGTTAGGGTTTTTATTTAAGGGTTTAGA-GCTTTTAATTAAATTAGGCTAG
* * *
32220707 GGTTAGGGTTTTTATTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAG
1 GGTTAGGGTTTTTATTTAAGGGTTTAGAGCTTTTAATTAAATTAGGCTAG
* *
32220757 GTTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGGCTAG
1 GGTTAGGGTTTTTATTTAAGGGTTTAGAGCTTTTAATTAAATTAGGCTAG
32220807 GGTTAGGGTTT
1 GGTTAGGGTTT
32220818 AGGGTTTTTA
Statistics
Matches: 149, Mismatches: 10, Indels: 4
0.91 0.06 0.02
Matches are distributed among these distances:
49 1 0.01
50 148 0.99
ACGTcount: A:0.24, C:0.02, G:0.28, T:0.46
Consensus pattern (50 bp):
GGTTAGGGTTTTTATTTAAGGGTTTAGAGCTTTTAATTAAATTAGGCTAG
Found at i:32220735 original size:21 final size:20
Alignment explanation
Indices: 32220705--32220746 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 20
32220695 GAATTAGGTT
*
32220705 AGGGTTAGGGTTTTTATTTA
1 AGGGTTAGGGTTTTTAATTA
32220725 AGGGTTTAGGGTTTTTAATTA
1 AGGG-TTAGGGTTTTTAATTA
32220746 A
1 A
32220747 ATTAGGTTAG
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.24, C:0.00, G:0.29, T:0.48
Consensus pattern (20 bp):
AGGGTTAGGGTTTTTAATTA
Found at i:32220781 original size:21 final size:21
Alignment explanation
Indices: 32220756--32220796 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
32220746 AATTAGGTTA
* *
32220756 GGTTTAGGGTTTTTATTTAAG
1 GGTTTAGGGCTTTTAATTAAG
32220777 GGTTTAGGGCTTTTAATTAA
1 GGTTTAGGGCTTTTAATTAA
32220797 ATTAGGCTAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.22, C:0.02, G:0.27, T:0.49
Consensus pattern (21 bp):
GGTTTAGGGCTTTTAATTAAG
Found at i:32220815 original size:36 final size:36
Alignment explanation
Indices: 32220775--32220853 Score: 131
Period size: 36 Copynumber: 2.2 Consensus size: 36
32220765 TTTTTATTTA
32220775 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTT
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTT
* *
32220811 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTT
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTT
*
32220847 ATGGTTT
1 AGGGTTT
32220854 TTAATTAAGG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.24, C:0.03, G:0.30, T:0.43
Consensus pattern (36 bp):
AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTT
Found at i:32220815 original size:86 final size:86
Alignment explanation
Indices: 32220725--32221002 Score: 340
Period size: 86 Copynumber: 3.1 Consensus size: 86
32220715 TTTTTATTTA
*
32220725 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGTTTAGGGTTTTTATTTAAGGGTTTAGGGCTTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTT
32220790 TAATTAAATTAGGCTAGGGTT
66 TAATTAAATTAGGCTAGGGTT
* * *
32220811 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTATGGTTTTTAATTAAGGGTTTAGGGTTTT
1 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGG-CTT
* *
32220876 TAAATGAATTAAATTAGGTTAGAGTTTTTAATT
65 T---T-AATTAAATTAGGCTAG-G------GTT
* * * * *
32220909 AAAGGTTTAAGGTTTTTAACTGAATTAGGTTAGGGTTAGGGTTTTTATTTAAAGGTTTAGGGCTT
1 -AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTT
32220974 TTAATTAAATTAGGCTAGGGTT
65 TTAATTAAATTAGGCTAGGGTT
32220996 AGGGTTT
1 AGGGTTT
32221003 TTATTTAATG
Statistics
Matches: 162, Mismatches: 17, Indels: 26
0.79 0.08 0.13
Matches are distributed among these distances:
86 64 0.40
87 5 0.03
90 1 0.01
91 15 0.09
92 1 0.01
93 1 0.01
94 15 0.09
95 1 0.01
98 5 0.03
99 54 0.33
ACGTcount: A:0.27, C:0.02, G:0.27, T:0.45
Consensus pattern (86 bp):
AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGCTTT
TAATTAAATTAGGCTAGGGTT
Found at i:32220829 original size:136 final size:135
Alignment explanation
Indices: 32220675--32221102 Score: 451
Period size: 136 Copynumber: 3.1 Consensus size: 135
32220665 TTTTTATTTA
* *
32220675 AGGGTTTAAGGTTTTTAATTGAATTAGGTTAGGGTTAGGGTTTTTATTTAAGGGTTTAGGGTTTT
1 AGGGTTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTT
* ** * * * * *
32220740 TAATTAAATTAGGTTAGGTTTAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGGCT
66 TAAATAAATTAAATTAGG-TTAGAGTTTTTAATTAAAGGTTTAAGGCTTTTAACTAAATTAGGCT
32220805 AGGGTT
130 AGGGTT
* *
32220811 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTATGGTTTTTAATTAAGGGTTTAGGGTTTT
1 AGGGTTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTT
* * * *
32220876 TAAATGAATTAAATTAGGTTAGAGTTTTTAATTAAAGGTTTAAGGTTTTTAACTGAATTAGGTTA
66 TAAATAAATTAAATTAGGTTAGAGTTTTTAATTAAAGGTTTAAGGCTTTTAACTAAATTAGGCTA
32220941 GGGTT
131 GGGTT
* *
32220946 AGGGTTTTTATTTAAAGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAA
1 AGGG------TTT-AAGG--T-----TTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAA
* * * *** * * * *
32221011 TGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAATGGTTTAGGGCTTTT
52 GGGTTTAGGGTTTTTAAATAAATTAAATTA-GGTTAGAGTTTTTAATTAAAGGTTTAAGGCTTTT
*
32221076 AATTAAATTAGGCTAGGGTT
116 AACTAAATTAGGCTAGGGTT
32221096 AGGGTTT
1 AGGGTTT
32221103 TTATTTAATG
Statistics
Matches: 242, Mismatches: 35, Indels: 22
0.81 0.12 0.07
Matches are distributed among these distances:
135 48 0.20
136 75 0.31
141 3 0.01
142 3 0.01
144 4 0.02
149 59 0.24
150 50 0.21
ACGTcount: A:0.26, C:0.02, G:0.27, T:0.46
Consensus pattern (135 bp):
AGGGTTTAAGGTTTTTAATTAAATTAGGTTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTT
TAAATAAATTAAATTAGGTTAGAGTTTTTAATTAAAGGTTTAAGGCTTTTAACTAAATTAGGCTA
GGGTT
Found at i:32220865 original size:50 final size:50
Alignment explanation
Indices: 32220811--32221208 Score: 505
Period size: 50 Copynumber: 8.0 Consensus size: 50
32220801 GGCTAGGGTT
* * *
32220811 AGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTATGGTTTTTAATTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* * * *** *
32220861 AGGGTTTAGGGTTTTTAAATGAATTAAATTA-GGTTAGAGTTTTTAATTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* * * * * * *
32220910 AAGGTTTAAGGTTTTTAACTGAATTAGGTTAGGGTTAGGGTTTTTATTTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* *
32220960 AAGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* *
32221010 ATGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* *
32221060 ATGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
*
32221110 ATGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
* * * * * *
32221160 AGGGTTTAGAGTTTTTAAATGAATTAGGTTA-GGCTAGGGTTTTT-ATTA
1 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
32221208 A
1 A
32221209 ATGTCATAAA
Statistics
Matches: 320, Mismatches: 27, Indels: 4
0.91 0.08 0.01
Matches are distributed among these distances:
48 5 0.02
49 54 0.17
50 261 0.82
ACGTcount: A:0.27, C:0.03, G:0.26, T:0.45
Consensus pattern (50 bp):
AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTA
Found at i:32220968 original size:21 final size:21
Alignment explanation
Indices: 32220944--32221132 Score: 63
Period size: 21 Copynumber: 7.9 Consensus size: 21
32220934 TAGGTTAGGG
32220944 TTAGGGTTTTTATTTAAAGGT
1 TTAGGGTTTTTATTTAAAGGT
* *
32220965 TTAGGGCTTTTAATTAAATTAGGCT
1 TTAGGG-TTTTTATTTAA--AGG-T
*
32220990 AGGGTTAGGGTTTTTATTTAATGGT
1 ----TTAGGGTTTTTATTTAAAGGT
* *
32221015 TTAGGGCTTTTAATTAAATTAGGCT
1 TTAGGG-TTTTTATTTAA--AGG-T
*
32221040 AGGGTTAGGGTTTTTATTTAATGGT
1 ----TTAGGGTTTTTATTTAAAGGT
* *
32221065 TTAGGGCTTTTAATTAAATTAGGCT
1 TTAGGG-TTTTTATTTAA--AGG-T
*
32221090 AGGGTTAGGGTTTTTATTTAATGGT
1 ----TTAGGGTTTTTATTTAAAGGT
* *
32221115 TTAGGGCTTTTAATTAAA
1 TTAGGGTTTTTATTTAAA
32221133 TTAGGCTAGG
Statistics
Matches: 124, Mismatches: 20, Indels: 48
0.65 0.10 0.25
Matches are distributed among these distances:
21 33 0.27
22 27 0.22
24 7 0.06
25 6 0.05
26 6 0.05
28 27 0.22
29 18 0.15
ACGTcount: A:0.25, C:0.04, G:0.25, T:0.47
Consensus pattern (21 bp):
TTAGGGTTTTTATTTAAAGGT
Found at i:32221091 original size:285 final size:287
Alignment explanation
Indices: 32220581--32221209 Score: 895
Period size: 285 Copynumber: 2.2 Consensus size: 287
32220571 TACGTTAAGG
* * *
32220581 TTAGGGTTTTTAAATGAATTAAATTAGGTTAGGGTTTTTATTTAAGGGTTCAGAGCTTTTAATTA
1 TTAGGGTTTTTAAATGAATTAAATTAGGTTAGGGTTTTTATTAAAGGGTTAAGAGCTTTTAACTA
* * * *
32220646 AATTAGGCTAGGGTTAGGGTTTTTATTTAAGGGTTTAAGGTTTTTAATTGAATTAGGTTAGGGTT
66 AATTAGGCTAGGGTTAGGGTTTTTATTTAAAGGTTTAAGGCTTTTAATTAAATTAGGCTAGGGTT
* * *
32220711 AGGGTTTTTATTTAAGGGTTTAGGGTTTTTAATTAAATTAGGTTAGGTTTAGGGTTTTTATTTAA
131 AGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAA
*
32220776 GGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTA-G-GGTTTAGGGTTTTTAATTAAATTAGG
196 GGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGTGGTTTAGGGCTTTTAATTAAATTAGG
* *
32220839 TTAGGGTTATGGTTTTTAATTAAGGGT
261 CTAGGGTTAGGGTTTTTAATTAAGGGT
* * *
32220866 TTAGGGTTTTTAAATGAATTAAATTAGGTTAGAGTTTTTAATTAAAGGTTTAAG-GTTTTTAACT
1 TTAGGGTTTTTAAATGAATTAAATTAGGTTAGGGTTTTT-ATTAAAGGGTTAAGAGCTTTTAACT
* * *
32220930 GAATTAGGTTAGGGTTAGGGTTTTTATTTAAAGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGT
65 AAATTAGGCTAGGGTTAGGGTTTTTATTTAAAGGTTTAAGGCTTTTAATTAAATTAGGCTAGGGT
*
32220995 TAGGGTTTTTATTTAATGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTA
130 TAGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTA
*
32221060 ATGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAATGGTTTAGGGCTTT
195 AGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTA-GG-----------TGGTTTAGGGCTTT
32221125 TAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGT
248 TAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGT
* ** *
32221165 TTAGAGTTTTTAAATGAATTAGGTTAGGCTAGGGTTTTTATTAAA
1 TTAGGGTTTTTAAATGAATTAAATTAGGTTAGGGTTTTTATTAAA
32221210 TGTCATAAAC
Statistics
Matches: 303, Mismatches: 26, Indels: 17
0.88 0.08 0.05
Matches are distributed among these distances:
285 201 0.66
286 11 0.04
287 1 0.00
298 6 0.02
299 84 0.28
ACGTcount: A:0.26, C:0.02, G:0.26, T:0.45
Consensus pattern (287 bp):
TTAGGGTTTTTAAATGAATTAAATTAGGTTAGGGTTTTTATTAAAGGGTTAAGAGCTTTTAACTA
AATTAGGCTAGGGTTAGGGTTTTTATTTAAAGGTTTAAGGCTTTTAATTAAATTAGGCTAGGGTT
AGGGTTTTTATTTAAGGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAA
GGGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGTGGTTTAGGGCTTTTAATTAAATTAGG
CTAGGGTTAGGGTTTTTAATTAAGGGT
Found at i:32221118 original size:150 final size:149
Alignment explanation
Indices: 32220813--32221211 Score: 582
Period size: 150 Copynumber: 2.7 Consensus size: 149
32220803 CTAGGGTTAG
* * *
32220813 GGTTTAGGGTTTTTAATTAAATTAGGTTAGGGTTATGGTTTTTAATTAAGGGTTTAGGGTTTTTA
1 GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTTTA
** * * * * * *
32220878 AATGAATTAAATTAGGTTAGAGTTTTTAATTAAAGGTTTAAGGTTTTTAACTGAATTAGGTTAGG
66 AATGAATTAGGTTAGGTTAGGGTTTTTATTTAATGGTTTAAGGCTTTTAACTAAATTAGGCTAGG
32220943 GTTAGGGTTTTTATTTAAA
131 GTTAGGGTTTTTATTTAAA
* * *
32220962 GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAATGGTTTAGGGCTTTTA
1 GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTTTA
* * * * *
32221027 ATTAAATTAGGCTAGGGTTAGGGTTTTTATTTAATGGTTTAGGGCTTTTAATTAAATTAGGCTAG
66 AATGAATTAGGTTA-GGTTAGGGTTTTTATTTAATGGTTTAAGGCTTTTAACTAAATTAGGCTAG
*
32221092 GGTTAGGGTTTTTATTTAAT
130 GGTTAGGGTTTTTATTTAAA
*
32221112 GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGTTTAGAGTTTTTA
1 GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTTTA
* *
32221177 AATGAATTAGGTTAGGCTAGGGTTTTTATTAAATG
66 AATGAATTAGGTTAGGTTAGGGTTTTTATTTAATG
32221212 TCATAAACTT
Statistics
Matches: 220, Mismatches: 29, Indels: 2
0.88 0.12 0.01
Matches are distributed among these distances:
149 87 0.40
150 133 0.60
ACGTcount: A:0.27, C:0.03, G:0.26, T:0.45
Consensus pattern (149 bp):
GGTTTAGGGCTTTTAATTAAATTAGGCTAGGGTTAGGGTTTTTAATTAAGGGTTTAGGGTTTTTA
AATGAATTAGGTTAGGTTAGGGTTTTTATTTAATGGTTTAAGGCTTTTAACTAAATTAGGCTAGG
GTTAGGGTTTTTATTTAAA
Found at i:32221741 original size:18 final size:18
Alignment explanation
Indices: 32221718--32221752 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
32221708 CGGAAAAGGA
*
32221718 TACATATAAGGGTTAGGG
1 TACATATAAGGGCTAGGG
32221736 TACATATAAGGGCTAGG
1 TACATATAAGGGCTAGG
32221753 AAACGTACCT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.34, C:0.09, G:0.31, T:0.26
Consensus pattern (18 bp):
TACATATAAGGGCTAGGG
Found at i:32222417 original size:7 final size:7
Alignment explanation
Indices: 32222405--32222429 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
32222395 ATACATAGAT
32222405 AATACTA
1 AATACTA
32222412 AATACTA
1 AATACTA
32222419 AATACTA
1 AATACTA
32222426 AATA
1 AATA
32222430 TCAATCGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.60, C:0.12, G:0.00, T:0.28
Consensus pattern (7 bp):
AATACTA
Found at i:32223620 original size:51 final size:51
Alignment explanation
Indices: 32223565--32223684 Score: 170
Period size: 51 Copynumber: 2.4 Consensus size: 51
32223555 TTTAAAACAA
* * * *
32223565 GAAATTGATAAGAAATTTAAATTAAATATGGATTTGAGAGAATTTTTGAAG
1 GAAATTGAGAAGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGGAAG
*
32223616 GAAATTGAGAGGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGGAAG
1 GAAATTGAGAAGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGGAAG
* *
32223667 GAATTTGAG-AGGAATTGA
1 GAAATTGAGAAGAAATTGA
32223685 GAGGAAATAT
Statistics
Matches: 61, Mismatches: 8, Indels: 1
0.87 0.11 0.01
Matches are distributed among these distances:
50 7 0.11
51 54 0.89
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (51 bp):
GAAATTGAGAAGAAATTGAAATTAAATATAGATTTGAGAGAATTTTGGAAG
Found at i:32224844 original size:41 final size:40
Alignment explanation
Indices: 32224799--32224933 Score: 112
Period size: 41 Copynumber: 3.3 Consensus size: 40
32224789 TATATTTTAA
*
32224799 TTAAATTTTATGAATAATTAATATTTATTGCGTAAAAATAT
1 TTAAATTTTATAAATAATTAATATTTATTGC-TAAAAATAT
* ** * * * ** *
32224840 TTAAAATTTATATTTCA-T-ATATTAAAATATTAACAACATAA
1 TTAAATTTTATAAATAATTAATATT-TATTGCTAA-AA-ATAT
32224881 TTAAATTTTATAAATAATTAATATTTATTGCTTAAAAATAT
1 TTAAATTTTATAAATAATTAATATTTATTGC-TAAAAATAT
*
32224922 TTAAAATTTATA
1 TTAAATTTTATA
32224934 TTTCATATAT
Statistics
Matches: 68, Mismatches: 20, Indels: 12
0.68 0.20 0.12
Matches are distributed among these distances:
39 8 0.12
40 5 0.07
41 42 0.62
42 5 0.07
43 8 0.12
ACGTcount: A:0.47, C:0.04, G:0.03, T:0.46
Consensus pattern (40 bp):
TTAAATTTTATAAATAATTAATATTTATTGCTAAAAATAT
Found at i:32224905 original size:82 final size:82
Alignment explanation
Indices: 32224796--32224959 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 82
32224786 TTATATATTT
*
32224796 TAATTAAATTTTATGAATAATTAATATTTATTGCGTAAAAATATTTAAAATTTATATTTCATATA
1 TAATTAAATTTTATAAATAATTAATATTTATTGCGTAAAAATATTTAAAATTTATATTTCATATA
32224861 TTAAAATATTAACAACA
66 TTAAAATATTAACAACA
*
32224878 TAATTAAATTTTATAAATAATTAATATTTATTGCTTAAAAATATTTAAAATTTATATTTCATATA
1 TAATTAAATTTTATAAATAATTAATATTTATTGCGTAAAAATATTTAAAATTTATATTTCATATA
32224943 TTAAAATATTAACAACA
66 TTAAAATATTAACAACA
32224960 AGTTATAATA
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (82 bp):
TAATTAAATTTTATAAATAATTAATATTTATTGCGTAAAAATATTTAAAATTTATATTTCATATA
TTAAAATATTAACAACA
Found at i:32225469 original size:6 final size:6
Alignment explanation
Indices: 32225452--32225489 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
32225442 ACCCTTCTTC
*
32225452 TCCCCTT TCCCCT TCCCCT TCCCTT TCCCCT TCCCCT T
1 TCCCC-T TCCCCT TCCCCT TCCCCT TCCCCT TCCCCT T
32225490 GGGTTGCAAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (6 bp):
TCCCCT
Found at i:32225489 original size:18 final size:18
Alignment explanation
Indices: 32225454--32225489 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
32225444 CCTTCTTCTC
32225454 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
32225472 CCCTTTCCCCTTCCCCTT
1 CCCTTTCCCCTTCCCCTT
32225490 GGGTTGCAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.00, C:0.61, G:0.00, T:0.39
Consensus pattern (18 bp):
CCCTTTCCCCTTCCCCTT
Found at i:32229758 original size:21 final size:21
Alignment explanation
Indices: 32229732--32229786 Score: 85
Period size: 21 Copynumber: 2.6 Consensus size: 21
32229722 ACCGCTGTTT
*
32229732 CTAATCTCACTGCTACAGTATC
1 CTAATCTCACCGCTACAGTA-C
32229754 C-AATCTCACCGCTACAGTAC
1 CTAATCTCACCGCTACAGTAC
32229774 CTAATCTCACCGC
1 CTAATCTCACCGC
32229787 CACCTTATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
20 2 0.06
21 28 0.90
22 1 0.03
ACGTcount: A:0.27, C:0.38, G:0.09, T:0.25
Consensus pattern (21 bp):
CTAATCTCACCGCTACAGTAC
Found at i:32232186 original size:27 final size:27
Alignment explanation
Indices: 32232156--32232210 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
32232146 TGCACACATA
32232156 TAATAAATAAACAGGGGCTTAGGGGAT
1 TAATAAATAAACAGGGGCTTAGGGGAT
* *
32232183 TAATAAATGAATAGGGGCTTAGGGGAT
1 TAATAAATAAACAGGGGCTTAGGGGAT
32232210 T
1 T
32232211 CCCGTCTTAG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.38, C:0.05, G:0.31, T:0.25
Consensus pattern (27 bp):
TAATAAATAAACAGGGGCTTAGGGGAT
Found at i:32232495 original size:23 final size:25
Alignment explanation
Indices: 32232467--32232529 Score: 94
Period size: 23 Copynumber: 2.6 Consensus size: 25
32232457 TTTGCCCTCA
32232467 TCTCTGCCCTCTGCTGGTTCTTTG-
1 TCTCTGCCCTCTGCTGGTTCTTTGT
*
32232491 T-TCTGCCCTTTGCTGGTTCTTTGTT
1 TCTCTGCCCTCTGCTGGTTCTTTG-T
32232516 TCTCTGCCCTCTGC
1 TCTCTGCCCTCTGC
32232530 GGGTGAGTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
23 21 0.62
24 1 0.03
25 1 0.03
26 11 0.32
ACGTcount: A:0.00, C:0.33, G:0.19, T:0.48
Consensus pattern (25 bp):
TCTCTGCCCTCTGCTGGTTCTTTGT
Found at i:32233681 original size:128 final size:125
Alignment explanation
Indices: 32233399--32233669 Score: 271
Period size: 128 Copynumber: 2.1 Consensus size: 125
32233389 TTCATGCGGC
* ** * * *
32233399 CCGGCCCGACGGCCCGCCCGAAATATGGAAAAGTTCGGGTAAAAATATAGGCCAAAATATGGGTT
1 CCGGCCC-ACGGCCCGACATAAAAATAGAAAAGTTCGAGTAAAAATATAGGCCAAAATATGGGTT
* * * * *
32233464 TGGGCAAAAAATAATGCCCGTTTAGAAAATGGGCCGGGCCTCGGGCACCATTTTTTTGGCT
65 TGGACAAAAAATAAGGCCCGTTTAGAAAATGGCCCGGGCCTCAGGCACCATTTTTTGGGCT
* * * * * *
32233525 CGGGCTCCCAACGGCTCGCCCTAAAAATAGAAAGGTTCGAGTAAAAATATAGGCTCGAAATATGG
1 CCGG--CCC-ACGGCCCGACATAAAAATAGAAAAGTTCGAGTAAAAATATAGGC-CAAAATATGG
*
32233590 GTTTGGACAAAAAA-AGGAGGCCTGTTTAGAAAATAGGCCCGGGCCTCAGGCACCACTTTTTTGG
62 GTTTGGACAAAAAATA--AGGCCCGTTTAGAAAAT-GGCCCGGGCCTCAGGCACCA-TTTTTTGG
32233654 GC-
123 GCT
32233656 CCGG-CC-CGGCCCGA
1 CCGGCCCACGGCCCGA
32233670 ATATAATAAA
Statistics
Matches: 120, Mismatches: 18, Indels: 14
0.79 0.12 0.09
Matches are distributed among these distances:
126 9 0.08
128 44 0.37
129 22 0.18
130 15 0.12
131 21 0.17
132 9 0.08
ACGTcount: A:0.29, C:0.24, G:0.28, T:0.20
Consensus pattern (125 bp):
CCGGCCCACGGCCCGACATAAAAATAGAAAAGTTCGAGTAAAAATATAGGCCAAAATATGGGTTT
GGACAAAAAATAAGGCCCGTTTAGAAAATGGCCCGGGCCTCAGGCACCATTTTTTGGGCT
Found at i:32233707 original size:11 final size:11
Alignment explanation
Indices: 32233691--32233716 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
32233681 ATATTTTTTA
32233691 TTTTAAAATAT
1 TTTTAAAATAT
32233702 TTTTAAAATAT
1 TTTTAAAATAT
32233713 TTTT
1 TTTT
32233717 TTTATTTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
TTTTAAAATAT
Found at i:32233711 original size:30 final size:32
Alignment explanation
Indices: 32233677--32233741 Score: 98
Period size: 30 Copynumber: 2.1 Consensus size: 32
32233667 CGAATATAAT
*
32233677 AAATATATTTTTTA-TTTTAAAAT-ATTTTTA
1 AAATATATTTTTTATTTTTAAAATAAATTTTA
*
32233707 AAATATTTTTTTTATTTTTAAAATAAATTTTA
1 AAATATATTTTTTATTTTTAAAATAAATTTTA
32233739 AAA
1 AAA
32233742 AAATGGGCTG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
30 13 0.42
31 9 0.29
32 9 0.29
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (32 bp):
AAATATATTTTTTATTTTTAAAATAAATTTTA
Found at i:32233737 original size:20 final size:20
Alignment explanation
Indices: 32233699--32233737 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
32233689 TATTTTAAAA
**
32233699 TATTTTTAAAATATTTTTTT
1 TATTTTTAAAATAAATTTTT
32233719 TATTTTTAAAATAAATTTT
1 TATTTTTAAAATAAATTTT
32233738 AAAAAAATGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
TATTTTTAAAATAAATTTTT
Found at i:32246649 original size:20 final size:20
Alignment explanation
Indices: 32246620--32246659 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
32246610 ATATTTTCCA
*
32246620 GTAAATCATTTTACAGAAAT
1 GTAAAACATTTTACAGAAAT
*
32246640 GTAAAACATTTTCCAGAAAT
1 GTAAAACATTTTACAGAAAT
32246660 CATTTTACCG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.45, C:0.12, G:0.10, T:0.33
Consensus pattern (20 bp):
GTAAAACATTTTACAGAAAT
Found at i:32246664 original size:34 final size:35
Alignment explanation
Indices: 32246607--32246672 Score: 107
Period size: 34 Copynumber: 1.9 Consensus size: 35
32246597 CAAACACCAG
*
32246607 AAAATATTTTCCAGTAAATCATTTTACAGAAATGT
1 AAAACATTTTCCAGTAAATCATTTTACAGAAATGT
*
32246642 AAAACATTTTCCAG-AAATCATTTTACCGAAA
1 AAAACATTTTCCAGTAAATCATTTTACAGAAA
32246673 GCATTTTACT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
34 16 0.55
35 13 0.45
ACGTcount: A:0.44, C:0.15, G:0.08, T:0.33
Consensus pattern (35 bp):
AAAACATTTTCCAGTAAATCATTTTACAGAAATGT
Found at i:32247676 original size:6 final size:6
Alignment explanation
Indices: 32247668--32247962 Score: 518
Period size: 6 Copynumber: 49.2 Consensus size: 6
32247658 CTCATCTTAA
* * * * * * * *
32247668 TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA TAATAA
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247716 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247764 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247812 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247860 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247908 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
1 TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC TAATAC
32247956 TAATAC T
1 TAATAC T
32247963 TACCTCACAT
Statistics
Matches: 288, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 288 1.00
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (6 bp):
TAATAC
Found at i:32249906 original size:6 final size:6
Alignment explanation
Indices: 32249895--32249932 Score: 58
Period size: 6 Copynumber: 6.2 Consensus size: 6
32249885 TAATTTTCCC
*
32249895 TTTCTT TCTCTTT TTTCTT TTTCTT TTTCTT TTTCTT T
1 TTTCTT TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT T
32249933 CTTTCTTTCT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
6 24 0.83
7 5 0.17
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:32250452 original size:30 final size:27
Alignment explanation
Indices: 32250416--32250480 Score: 76
Period size: 30 Copynumber: 2.3 Consensus size: 27
32250406 TTTCCTATAA
*
32250416 TATAATATCTTAACTTTAATTAATATAATT
1 TATAATATCTTAA--TTAAATAATAT-ATT
* *
32250446 TATAATATTTTAATTAAATAATATTTT
1 TATAATATCTTAATTAAATAATATATT
32250473 TATAATAT
1 TATAATAT
32250481 AAATCAAGAA
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
27 10 0.31
28 10 0.31
30 12 0.38
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (27 bp):
TATAATATCTTAATTAAATAATATATT
Done.