Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold1301

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2089
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.33


Found at i:915 original size:18 final size:19

Alignment explanation


    Indices: 881--924  Score: 56
    Period size: 18  Copynumber: 2.4  Consensus size: 19

        871 ATTTTTATAG

                         *     
        881 AAAGA-AAAGGGAGAAATA
          1 AAAGAGAAAGGGAAAAATA

                              *
        899 AAAGAGAAA-GGAAAAATT
          1 AAAGAGAAAGGGAAAAATA

                    
        917 AAAGAGAA
          1 AAAGAGAA

        925 TAGAGGAAAT


Statistics
Matches: 23,  Mismatches: 2, Indels: 2
        0.85            0.07        0.07

Matches are distributed among these distances:
  18   20  0.87
  19    3  0.13

ACGTcount: A:0.68, C:0.00, G:0.25, T:0.07


Consensus pattern (19 bp):   
AAAGAGAAAGGGAAAAATA
Done.