Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold4639

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 304

Length: 507
ACGTcount: A:0.44, C:0.20, G:0.11, T:0.25


Found at i:205 original size:14 final size:14

Alignment explanation


    Indices: 186--215  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        176 CACGAAAAGC

                          
        186 AAGATGATTAACTA
          1 AAGATGATTAACTA

                      *   
        200 AAGATGATTAGCTA
          1 AAGATGATTAACTA

              
        214 AA
          1 AA

        216 AACCTTTTAT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.50, C:0.07, G:0.17, T:0.27


Consensus pattern (14 bp):   
AAGATGATTAACTA
Done.