Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2389

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 961
ACGTcount: A:0.39, C:0.18, G:0.12, T:0.31


Found at i:751 original size:10 final size:10

Alignment explanation


    Indices: 738--763  Score: 52
    Period size: 10  Copynumber: 2.6  Consensus size: 10

        728 AAAACACAAA

                      
        738 CACACACGTG
          1 CACACACGTG

                      
        748 CACACACGTG
          1 CACACACGTG

                  
        758 CACACA
          1 CACACA

        764 TTCCATAATA


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   16  1.00

ACGTcount: A:0.35, C:0.42, G:0.15, T:0.08


Consensus pattern (10 bp):   
CACACACGTG
Done.