Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold3718

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 406

Length: 678
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.31


Found at i:632 original size:20 final size:20

Alignment explanation


    Indices: 607--659  Score: 88
    Period size: 21  Copynumber: 2.6  Consensus size: 20

        597 TTGAAGGATA

                                
        607 TTGAATTTTGACGAGTCCAC
          1 TTGAATTTTGACGAGTCCAC

                      *          
        627 TTGAATTTTTAACGAGTCCAC
          1 TTGAA-TTTTGACGAGTCCAC

                        
        648 TTGAATTTTGAC
          1 TTGAATTTTGAC

        660 TTGCTAATTT


Statistics
Matches: 30,  Mismatches: 2, Indels: 2
        0.88            0.06        0.06

Matches are distributed among these distances:
  20   11  0.37
  21   19  0.63

ACGTcount: A:0.26, C:0.17, G:0.17, T:0.40


Consensus pattern (20 bp):   
TTGAATTTTGACGAGTCCAC

Done.