Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2525

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 550

Length: 918
ACGTcount: A:0.37, C:0.12, G:0.13, T:0.27

Warning! 100 characters in sequence are not A, C, G, or T


Found at i:712 original size:11 final size:12

Alignment explanation


    Indices: 687--713  Score: 54
    Period size: 12  Copynumber: 2.2  Consensus size: 12

        677 CATGATTGCC

                        
        687 AAATATTTAAAA
          1 AAATATTTAAAA

                        
        699 AAATATTTAAAA
          1 AAATATTTAAAA

               
        711 AAA
          1 AAA

        714 CGATTTTAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   15  1.00

ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30


Consensus pattern (12 bp):   
AAATATTTAAAA
Done.