Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: scaffold2458

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 564

Length: 940
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:98 original size:13 final size:13

Alignment explanation


    Indices: 80--108  Score: 58
    Period size: 13  Copynumber: 2.2  Consensus size: 13

         70 ATCTCTCTAA

                         
         80 TAGATGCCATTGC
          1 TAGATGCCATTGC

                         
         93 TAGATGCCATTGC
          1 TAGATGCCATTGC

               
        106 TAG
          1 TAG

        109 CTCATTTTCT


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31


Consensus pattern (13 bp):   
TAGATGCCATTGC
Done.